TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3199064.2.1
(589 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG040013.1|BG040013 NXSI_105_D08_F NXSI (Nsf Xylem Side ... 188 2e-047
gb|BX255621.1|BX255621 BX255621 Pinus pinaster differenciat... 188 4e-047
gb|CO164697.1|CO164697 FLD1_49_E08.g1_A029 Root flooded Pin... 185 2e-046
gb|DR079650.1|DR079650 RTFEPL1_12_D08.g1_A029 Roots plus ad... 185 2e-046
gb|DR384947.1|DR384947 RTHG1_5_D12.g1_A029 Roots plus added... 185 2e-046
dbj|BD235995.1| Materials and method for modification of pl... 182 2e-045
gb|CO162170.1|CO162170 FLD1_33_C12.g1_A029 Root flooded Pin... 182 2e-045
gb|DR025229.1|DR025229 STRS1_70_H11.b1_A034 Shoot tip pitch... 182 2e-045
gb|CX713086.1|CX713086 RTPQ1_6_H09.g1_A032 Roots treated wi... 181 3e-045
gb|DR017070.1|DR017070 STRS1_13_H07.g1_A034 Shoot tip pitch... 181 3e-045
gb|DR097105.1|DR097105 STRR1_32_C03.g1_A033 Stem Response R... 181 3e-045
emb|AJ309093.1|PPI309093 Pinus pinaster partial mRNA for pu... 180 6e-045
dbj|BD236026.1| Materials and method for modification of pl... 178 2e-044
gb|BX255440.1|BX255440 BX255440 Pinus pinaster differenciat... 176 2e-043
gb|DR070028.1|DR070028 RTDK1_10_G09.g1_A029 Roots, dark Pin... 175 2e-043
gb|DR690595.1|DR690595 EST1080681 Normalized pine embryo li... 171 4e-042
gb|DT636185.1|DT636185 EST1151116 Normalized pine embryo li... 163 1e-039
gb|DR079060.1|DR079060 RTFEPL1_8_E10.g1_A029 Roots plus add... 162 2e-039
gb|BX252531.1|BX252531 BX252531 Pinus pinaster differenciat... 143 9e-034
gb|CO159567.1|CO159567 FLD1_14_H08.b1_A029 Root flooded Pin... 131 4e-030
gb|DT624646.1|DT624646 EST1158981 Sequencing ESTs from lobl... 63 2e-021
gb|CV144584.1|CV144584 EST855793 Sequencing ESTs from loblo... 63 2e-021
gb|CN785947.1|CN785947 EST784638 Sequencing ESTs from loblo... 63 2e-021
gb|DR163193.1|DR163193 RTFE1_41_B01.g1_A029 Roots minus iro... 63 2e-021
gb|CO412350.1|CO412350 EST842735 Sequencing ESTs from loblo... 63 2e-021
gb|DN453462.1|DN453462 EST949261 Sequencing ESTs from loblo... 63 2e-021
gb|DN460337.1|DN460337 EST956136 Sequencing ESTs from loblo... 63 2e-021
gb|DN460928.1|DN460928 EST956727 Sequencing ESTs from loblo... 63 2e-021
gb|CO166040.1|CO166040 FLD1_58_H05.g1_A029 Root flooded Pin... 63 2e-021
gb|CO412547.1|CO412547 EST842932 Sequencing ESTs from loblo... 63 2e-021
gb|CV138382.1|CV138382 EST849591 Sequencing ESTs from loblo... 63 2e-021
gb|DR163107.1|DR163107 RTFE1_41_B01.b1_A029 Roots minus iro... 63 2e-021
gb|CO198787.1|CO198787 GEO1_16_B12.g1_A029 Root gravitropis... 63 2e-021
gb|CF668284.1|CF668284 RTCNT1_35_C03.g1_A029 Root control P... 63 2e-021
gb|CF387874.1|CF387874 RTDR1_18_D10.g1_A015 Loblolly pine r... 63 2e-021
gb|CF385428.1|CF385428 RTDR1_3_H09.g1_A015 Loblolly pine ro... 63 2e-021
gb|CF473594.1|CF473594 RTWW2_3_F08.g1_A021 Well-watered lob... 63 2e-021
gb|CO198727.1|CO198727 GEO1_16_B12.b1_A029 Root gravitropis... 63 2e-021
gb|CO165965.1|CO165965 FLD1_58_H05.b1_A029 Root flooded Pin... 63 2e-021
gb|CF668205.1|CF668205 RTCNT1_35_C03.b1_A029 Root control P... 63 2e-021
gb|DR011301.1|DR011301 HEAT1_4_H09.g1_A029 Root at 37 C for... 63 2e-021
gb|CO159187.1|CO159187 FLD1_12_B12.b1_A029 Root flooded Pin... 63 2e-021
gb|CO198223.1|CO198223 GEO1_12_D05.b1_A029 Root gravitropis... 63 2e-021
gb|DR080503.1|DR080503 RTFEPL1_23_D09.b1_A029 Roots plus ad... 63 2e-021
gb|CF387329.1|CF387329 RTDR1_12_D05.b1_A015 Loblolly pine r... 63 2e-021
gb|BX679928.1|BX679928 BX679928 RS Pinus pinaster cDNA clon... 63 4e-021
gb|CO198290.1|CO198290 GEO1_12_D05.g1_A029 Root gravitropis... 62 7e-021
>gb|BG040013.1|BG040013 NXSI_105_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_105_D08 5' similar to Arabidopsis thaliana
sequence At4g02280 putative sucrose synthetase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 528
Score = 188 bits (406), Expect = 2e-047
Identities = 79/102 (77%), Positives = 90/102 (88%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LHG+IE L+++PEQ EH+ L+
Sbjct: 83 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHGTIEELLFNPEQTAEHMCALN 262
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
DR KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 263 DRKKPIIFSMARLDRVKNMTGLVEWFAKSKRLRELVNLVVVA 388
Score = 109 bits (233), Expect = 2e-023
Identities = 55/102 (53%), Positives = 64/102 (62%)
Frame = -1 / -1
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T +PV+F T SSLA+EK MGF RS + +CS+ CSG S
Sbjct: 387 ATTTRLTNSLKRLLFANHSTNPVIFLTRSSLAIEKIMGFLRSFKAHICSAVCSGLNKSSS 208
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
I P + V R FSV GK + MSAPGET+LN GSKTSIP TTR
Sbjct: 207 IVPCKAVRRCCFSV*GK*ICMSAPGETMLNLGSKTSIPCTTR 82
>gb|BX255621.1|BX255621 BX255621 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007G11 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 706
Score = 188 bits (404), Expect = 4e-047
Identities = 79/102 (77%), Positives = 90/102 (88%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LHG+IE L+++PEQ DEH+ L+
Sbjct: 69 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHGAIEELLFNPEQTDEHMCVLN 248
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 249 DPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 374
Score = 110 bits (234), Expect = 1e-023
Identities = 57/102 (55%), Positives = 64/102 (62%)
Frame = -1 / -1
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T SPV+FFT SSLA+EK +GF S R +CSS CSG S
Sbjct: 373 ATTTRLTSSLKRLFFANHSTSPVIFFTRSSLAIEKIIGFLGSFRTHICSSVCSGLNKSSS 194
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
I P + V R FSV GK + MSAPGET+LN GSKTSIP TTR
Sbjct: 193 IAPCKAVRRCCFSV*GK*ICMSAPGETMLNLGSKTSIP*TTR 68
>gb|CO164697.1|CO164697 FLD1_49_E08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_49_E08_A029 5', mRNA sequence
Length = 885
Score = 185 bits (399), Expect = 2e-046
Identities = 79/102 (77%), Positives = 88/102 (86%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LHGSIE L++ PEQ EHI ++
Sbjct: 71 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHGSIEALLFSPEQTAEHICVMN 250
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 251 DHKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 376
Score = 105 bits (224), Expect = 3e-022
Identities = 54/102 (52%), Positives = 63/102 (61%)
Frame = -1 / -1
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T +PV+F T SSLA+EK MGF S +CS+ CSG S
Sbjct: 375 ATTTRLTSSLKRLFFANHSTNPVIFLTRSSLAIEKIMGFLWSFMTHICSAVCSGLNKSAS 196
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
IEP + V R FSV GK + MSAPG+T+LN GSKTSIP TTR
Sbjct: 195 IEPCKAVRRCCFSV*GK*ICMSAPGDTMLNLGSKTSIP*TTR 70
>gb|DR079650.1|DR079650 RTFEPL1_12_D08.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_12_D08_A029 5', mRNA sequence
Length = 845
Score = 185 bits (399), Expect = 2e-046
Identities = 79/102 (77%), Positives = 88/102 (86%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LHGSIE L++ PEQ EHI ++
Sbjct: 171 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHGSIEALLFSPEQTAEHICVMN 350
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 351 DHKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 476
Score = 105 bits (224), Expect = 3e-022
Identities = 54/102 (52%), Positives = 63/102 (61%)
Frame = -1 / -2
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T +PV+F T SSLA+EK MGF S +CS+ CSG S
Sbjct: 475 ATTTRLTSSLKRLFFANHSTNPVIFLTRSSLAIEKIMGFLWSFMTHICSAVCSGLNKSAS 296
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
IEP + V R FSV GK + MSAPG+T+LN GSKTSIP TTR
Sbjct: 295 IEPCKAVRRCCFSV*GK*ICMSAPGDTMLNLGSKTSIP*TTR 170
>gb|DR384947.1|DR384947 RTHG1_5_D12.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_5_D12_A029 5', mRNA sequence
Length = 787
Score = 185 bits (399), Expect = 2e-046
Identities = 79/102 (77%), Positives = 88/102 (86%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LHGSIE L++ PEQ EHI ++
Sbjct: 225 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHGSIEALLFSPEQTAEHICVMN 404
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 405 DHKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 530
Score = 105 bits (224), Expect = 3e-022
Identities = 54/102 (52%), Positives = 63/102 (61%)
Frame = -1 / -1
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T +PV+F T SSLA+EK MGF S +CS+ CSG S
Sbjct: 529 ATTTRLTSSLKRLFFANHSTNPVIFLTRSSLAIEKIMGFLWSFMTHICSAVCSGLNKSAS 350
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
IEP + V R FSV GK + MSAPG+T+LN GSKTSIP TTR
Sbjct: 349 IEPCKAVRRCCFSV*GK*ICMSAPGDTMLNLGSKTSIP*TTR 224
>dbj|BD235995.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 477
Score = 182 bits (392), Expect = 2e-045
Identities = 76/99 (76%), Positives = 86/99 (86%)
Frame = +3 / +2
Query: 12 HGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRS 191
HGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LHG+IE L++ PEQ EH+ L+DR
Sbjct: 2 HGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTTLHGTIEELLFSPEQTAEHMCALNDRK 181
Query: 192 KPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 182 KPIIFSMARLDRVKNMTGLVEWFAKSKRLRELVNLVVVA 298
Score = 103 bits (220), Expect = 9e-022
Identities = 52/98 (53%), Positives = 61/98 (62%)
Frame = -1 / -1
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T +PV+F T SSLA+EK MGF RS + +CS+ CSG S
Sbjct: 297 ATTTRLTSSLKRLLFANHSTNPVIFLTRSSLAIEKIMGFLRSFKAHICSAVCSGLNKSSS 118
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIP 14
I P + V R FSV GK + MSAPGET+LN GSKTSIP
Sbjct: 117 IVPCKVVRRCCFSV*GK*ICMSAPGETMLNLGSKTSIP 4
>gb|CO162170.1|CO162170 FLD1_33_C12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_C12_A029 5', mRNA sequence
Length = 853
Score = 182 bits (391), Expect = 2e-045
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IY+P+TEK RLT+LH +IE L++ PEQ EH+ L+
Sbjct: 470 RVVHGIDVFDPKFNIVSPGADMQIYYPYTEKQHRLTTLHRTIEELLFSPEQTAEHMCVLN 649
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
DR KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 650 DRKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 775
Score = 101 bits (216), Expect = 3e-021
Identities = 54/102 (52%), Positives = 63/102 (61%)
Frame = -1 / -2
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T SPV+FFT SSLA+EK MGF RS + +CS+ CSG S
Sbjct: 774 ATTTRLTSSLKRLFFANHSTSPVIFFTRSSLAIEKIMGFLRSFKTHICSAVCSGLNKSSS 595
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
I + V R FSV G + MSAPG+T+LN GSKTSIP TTR
Sbjct: 594 IVRCKVVRRCCFSV*G**ICMSAPGDTMLNLGSKTSIP*TTR 469
>gb|DR025229.1|DR025229 STRS1_70_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_H11_A034 3', mRNA sequence
Length = 861
Score = 182 bits (391), Expect = 2e-045
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = +3 / -2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IY+P+TEK RLT+LH +IE L++ PEQ EH+ L+
Sbjct: 470 RVVHGIDVFDPKFNIVSPGADMQIYYPYTEKQHRLTTLHRTIEELLFSPEQTAEHMCVLN 291
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
DR KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 290 DRKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 165
Score = 101 bits (216), Expect = 3e-021
Identities = 54/102 (52%), Positives = 63/102 (61%)
Frame = -1 / +1
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T SPV+FFT SSLA+EK MGF RS + +CS+ CSG S
Sbjct: 166 ATTTRLTSSLKRLFFANHSTSPVIFFTRSSLAIEKIMGFLRSFKTHICSAVCSGLNKSSS 345
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
I + V R FSV G + MSAPG+T+LN GSKTSIP TTR
Sbjct: 346 IVRCKVVRRCCFSV*G**ICMSAPGDTMLNLGSKTSIP*TTR 471
>gb|CX713086.1|CX713086 RTPQ1_6_H09.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_6_H09_A032 5', mRNA sequence
Length = 829
Score = 181 bits (390), Expect = 3e-045
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LH +IE L+++PEQ EH+ L+
Sbjct: 225 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHSTIEELLFNPEQTAEHMCVLN 404
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 405 DPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 530
Score = 103 bits (220), Expect = 9e-022
Identities = 55/102 (53%), Positives = 63/102 (61%)
Frame = -1 / -1
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T SPV+FFT SSLA+EK +GF S R +CS+ CSG S
Sbjct: 529 ATTTRLTSSLKRLFFANHSTSPVIFFTRSSLAIEKIIGFLGSFRTHICSAVCSGLNKSSS 350
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
I + V R FSV GK + MSAPGET+LN GSKTSIP TTR
Sbjct: 349 IVLCKAVRRCCFSV*GK*ICMSAPGETMLNLGSKTSIP*TTR 224
>gb|DR017070.1|DR017070 STRS1_13_H07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_13_H07_A034 5', mRNA sequence
Length = 379
Score = 181 bits (390), Expect = 3e-045
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LH +IE L+++PEQ EH+ L+
Sbjct: 6 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHSTIEELLFNPEQTAEHMCVLN 185
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 186 DPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 311
Score = 103 bits (220), Expect = 9e-022
Identities = 55/102 (53%), Positives = 63/102 (61%)
Frame = -1 / -1
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T SPV+FFT SSLA+EK +GF S R +CS+ CSG S
Sbjct: 310 ATTTRLTSSLKRLFFANHSTSPVIFFTRSSLAIEKIIGFLGSFRTHICSAVCSGLNKSSS 131
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
I + V R FSV GK + MSAPGET+LN GSKTSIP TTR
Sbjct: 130 IVLCKAVRRCCFSV*GK*ICMSAPGETMLNLGSKTSIP*TTR 5
>gb|DR097105.1|DR097105 STRR1_32_C03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_32_C03_A033 5', mRNA sequence
Length = 743
Score = 181 bits (390), Expect = 3e-045
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LH +IE L+++PEQ EH+ L+
Sbjct: 80 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHSTIEELLFNPEQTAEHMCVLN 259
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 260 DPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 385
Score = 103 bits (220), Expect = 9e-022
Identities = 55/102 (53%), Positives = 63/102 (61%)
Frame = -1 / -3
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T SPV+FFT SSLA+EK +GF S R +CS+ CSG S
Sbjct: 384 ATTTRLTSSLKRLFFANHSTSPVIFFTRSSLAIEKIIGFLGSFRTHICSAVCSGLNKSSS 205
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
I + V R FSV GK + MSAPGET+LN GSKTSIP TTR
Sbjct: 204 IVLCKAVRRCCFSV*GK*ICMSAPGETMLNLGSKTSIP*TTR 79
>emb|AJ309093.1|PPI309093 Pinus pinaster partial mRNA for putative sucrose synthase
Length = 787
Score = 180 bits (388), Expect = 6e-045
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVH IDVFDPK NIVSPGADM IYFP+TEK RLT+LHG+IE L+++PEQ DEH+ L+
Sbjct: 108 RVVHRIDVFDPKSNIVSPGADMQIYFPYTEKQHRLTALHGAIEELLFNPEQTDEHMCVLN 287
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
D KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 288 DPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 413
Score = 103 bits (219), Expect = 1e-021
Identities = 55/102 (53%), Positives = 63/102 (61%)
Frame = -1 / -1
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T SPV+FFT SSLA+EK +GF S R +CSS CSG S
Sbjct: 412 ATTTRLTSSLKRLFFANHSTSPVIFFTRSSLAIEKIIGFLGSFRTHICSSVCSGLNKSSS 233
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
I P + V R FSV GK + MSAPGET+L+ GSKTSI TTR
Sbjct: 232 IAPCKAVRRCCFSV*GK*ICMSAPGETMLDLGSKTSIL*TTR 107
>dbj|BD236026.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 1169
Score = 178 bits (384), Expect = 2e-044
Identities = 75/98 (76%), Positives = 85/98 (86%)
Frame = +3 / +3
Query: 15 GIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRSK 194
GIDVFDPKFNIVSPGADM IYFP+TEK RLT+LHG+IE L++ PEQ EH+ L+DR K
Sbjct: 72 GIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTTLHGTIEELLFSPEQTAEHMCALNDRKK 251
Query: 195 PILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
PI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 252 PIIFSMARLDRVKNMTGLVEWFAKSKRLRELVNLVVVA 365
Score = 103 bits (219), Expect = 1e-021
Identities = 52/98 (53%), Positives = 61/98 (62%)
Frame = -1 / -2
Query: 307 ATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFS 128
ATTTR T +PV+F T SSLA+EK MGF RS + +CS+ CSG S
Sbjct: 364 ATTTRLTNSLKRLLFANHSTNPVIFLTRSSLAIEKIMGFLRSFKAHICSAVCSGLNKSSS 185
Query: 127 IEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIP 14
I P + V R FSV GK + MSAPGET+LN GSKTSIP
Sbjct: 184 IVPCKVVRRCCFSV*GK*ICMSAPGETMLNLGSKTSIP 71
>gb|BX255440.1|BX255440 BX255440 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005G10 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 603
Score = 176 bits (378), Expect = 2e-043
Identities = 73/97 (75%), Positives = 84/97 (86%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LHG+IE L+++PEQ DEH+ L+
Sbjct: 313 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHGAIEELLFNPEQTDEHMCVLN 492
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVN 293
D KPI+FSMARLDRVKN+TGLVE FA +LRELVN
Sbjct: 493 DPKKPIIFSMARLDRVKNMTGLVEWFAXNKRLRELVN 603
Score = 100 bits (213), Expect = 9e-021
Identities = 50/81 (61%), Positives = 57/81 (70%)
Frame = -1 / -2
Query: 244 PVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFSIEP*REVSRLAFSVCGKYMDM 65
PV+FFT SSLA+EK +GF S R +CSS CSG SI P + V R FSV GK + M
Sbjct: 554 PVIFFTRSSLAIEKIIGFLGSFRTHICSSVCSGLNKSSSIAPCKAVRRCCFSV*GK*ICM 375
Query: 64 SAPGETILNFGSKTSIPWTTR 2
SAPGET+LN GSKTSIP TTR
Sbjct: 374 SAPGETMLNLGSKTSIP*TTR 312
>gb|DR070028.1|DR070028 RTDK1_10_G09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_10_G09_A029 5', mRNA sequence
Length = 734
Score = 175 bits (377), Expect = 2e-043
Identities = 74/99 (74%), Positives = 85/99 (85%)
Frame = +3 / +3
Query: 12 HGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRS 191
HGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LH +IE L+++PEQ EH+ L+D
Sbjct: 84 HGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHSTIEELLFNPEQTAEHMCVLNDPK 263
Query: 192 KPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
KPI+FSMARLDRVKN+TGLVE FAK +LRELVNLVVVA
Sbjct: 264 KPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVA 380
>gb|DR690595.1|DR690595 EST1080681 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACW88 3' end, mRNA sequence
Length = 676
Score = 171 bits (368), Expect = 4e-042
Identities = 72/98 (73%), Positives = 84/98 (85%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVV+GIDVFDPKFNIVSPGADM IYFP+TEK RLT+LH SIE L+++PEQ EH+ L+
Sbjct: 323 RVVNGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHDSIEELLFNPEQTAEHMCALN 502
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNL 296
D KPI+FSMARLDRVKN+TGLVE FA+ +LRELVNL
Sbjct: 503 DHKKPIIFSMARLDRVKNMTGLVEWFAENKRLRELVNL 616
Score = 103 bits (220), Expect = 9e-022
Identities = 53/98 (54%), Positives = 61/98 (62%)
Frame = -1 / -2
Query: 295 RFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFSIEP* 116
R T SPV+FFT SSLA+EK MGF S + +CS+ CSG SIE
Sbjct: 615 RLTSSLKRLFSANHSTSPVIFFTRSSLAIEKIMGFLWSFKAHICSAVCSGLNNSSSIESC 436
Query: 115 REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
+ V R FSV GK + MSAPGET+LNFGSKTSIP TTR
Sbjct: 435 KAVRRCCFSV*GK*ICMSAPGETMLNFGSKTSIPLTTR 322
>gb|DT636185.1|DT636185 EST1151116 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGO90 3' end, mRNA sequence
Length = 726
Score = 163 bits (350), Expect = 1e-039
Identities = 68/94 (72%), Positives = 80/94 (85%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVV+GIDVFDPKFNIVSPGADM IYFP+TEK RLT+LH SIE L+++PEQ EH+ L+
Sbjct: 444 RVVNGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHDSIEELLFNPEQTAEHMCALN 623
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRE 284
D KPI+FSMARLDRVKN+TGLVE FA+ +LRE
Sbjct: 624 DHKKPIIFSMARLDRVKNMTGLVEWFAENKRLRE 725
Score = 102 bits (217), Expect = 2e-021
Identities = 50/81 (61%), Positives = 58/81 (71%)
Frame = -1 / -3
Query: 244 PVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFSIEP*REVSRLAFSVCGKYMDM 65
PV+FFT SSLA+EK MGF S + +CS+ CSG SIE + V R FSV GK + M
Sbjct: 685 PVIFFTRSSLAIEKIMGFLWSFKAHICSAVCSGLNNSSSIESCKAVRRCCFSV*GK*ICM 506
Query: 64 SAPGETILNFGSKTSIPWTTR 2
SAPGET+LNFGSKTSIP TTR
Sbjct: 505 SAPGETMLNFGSKTSIPLTTR 443
>gb|DR079060.1|DR079060 RTFEPL1_8_E10.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_E10_A029 5', mRNA sequence
Length = 815
Score = 162 bits (348), Expect = 2e-039
Identities = 67/87 (77%), Positives = 75/87 (86%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TEK RLT+LHGSIE L++ PEQ EHI ++
Sbjct: 555 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHGSIEALLFSPEQTAEHICVMN 734
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFA 263
D KPI+FSMARLDRVKN+TGLVE FA
Sbjct: 735 DHKKPIIFSMARLDRVKNMTGLVEWFA 815
>gb|BX252531.1|BX252531 BX252531 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP066B03 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 712
Score = 143 bits (307), Expect = 9e-034
Identities = 60/85 (70%), Positives = 72/85 (84%)
Frame = +3 / +3
Query: 54 PGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRSKPILFSMARLDRVK 233
PGADM IYFP+T+K RLT+LHG+IE L+++PEQ EH+ L+D KPI+FSMARLDRVK
Sbjct: 3 PGADMQIYFPYTDKQHRLTALHGTIEKLLFNPEQTAEHMCALNDLKKPIIFSMARLDRVK 182
Query: 234 NITGLVEAFAKCAKLRELVNLVVVA 308
N+TGLVE FAK +LRELVNLVVVA
Sbjct: 183 NMTGLVEWFAKSKRLRELVNLVVVA 257
>gb|CO159567.1|CO159567 FLD1_14_H08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_14_H08_A029 3', mRNA sequence
Length = 824
Score = 131 bits (281), Expect = 4e-030
Identities = 53/74 (71%), Positives = 62/74 (83%)
Frame = +3 / -2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM IYFP+TE RLT+LH +IE L+++PEQ EH+ L+
Sbjct: 223 RVVHGIDVFDPKFNIVSPGADMQIYFPYTEXQHRLTALHSTIEELLFNPEQTAEHMCVLN 44
Query: 183 DRSKPILFSMARLD 224
D KPI+FSMARLD
Sbjct: 43 DPKKPIIFSMARLD 2
>gb|DT624646.1|DT624646 EST1158981 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAH55 5' end, mRNA sequence
Length = 1013
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +3
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 711 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 818
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +3
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 615 SALVLYYVHTQLPSRPTFASAVGIGVS 695
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +3
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 561 LIGYLKSGSNKS 596
>gb|CV144584.1|CV144584 EST855793 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPID755 5' end, mRNA sequence
Length = 961
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +3
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 711 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 818
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +3
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 615 SALVLYYVHTQLPSRPTFASAVGIGVS 695
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +3
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 561 LIGYLKSGSNKS 596
>gb|CN785947.1|CN785947 EST784638 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAB565 5' end, mRNA sequence
Length = 951
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +3
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 717 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 824
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +3
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 621 SALVLYYVHTQLPSRPTFASAVGIGVS 701
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +3
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 567 LIGYLKSGSNKS 602
>gb|DR163193.1|DR163193 RTFE1_41_B01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_41_B01_A029 5', mRNA sequence
Length = 953
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 653 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 760
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 557 SALVLYYVHTQLPSRPTFASAVGIGVS 637
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 503 LIGYLKSGSNKS 538
>gb|CO412350.1|CO412350 EST842735 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALW09 5' end, mRNA sequence
Length = 915
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 716 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 823
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 620 SALVLYYVHTQLPSRPTFASAVGIGVS 700
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 566 LIGYLKSGSNKS 601
>gb|DN453462.1|DN453462 EST949261 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIFT09 5' end, mRNA sequence
Length = 896
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 662 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 769
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 566 SALVLYYVHTQLPSRPTFASAVGIGVS 646
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 512 LIGYLKSGSNKS 547
>gb|DN460337.1|DN460337 EST956136 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHX36 5' end, mRNA sequence
Length = 889
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 716 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 823
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 620 SALVLYYVHTQLPSRPTFASAVGIGVS 700
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 566 LIGYLKSGSNKS 601
>gb|DN460928.1|DN460928 EST956727 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPII422 5' end, mRNA sequence
Length = 888
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 665 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 772
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 569 SALVLYYVHTQLPSRPTFASAVGIGVS 649
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 515 LIGYLKSGSNKS 550
>gb|CO166040.1|CO166040 FLD1_58_H05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_H05_A029 5', mRNA sequence
Length = 869
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +3
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 672 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 779
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +3
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 576 SALVLYYVHTQLPSRPTFASAVGIGVS 656
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +3
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 522 LIGYLKSGSNKS 557
>gb|CO412547.1|CO412547 EST842932 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALY70 5' end, mRNA sequence
Length = 853
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 716 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 823
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 620 SALVLYYVHTQLPSRPTFASAVGIGVS 700
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 566 LIGYLKSGSNKS 601
>gb|CV138382.1|CV138382 EST849591 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB248 5' end, mRNA sequence
Length = 851
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 713 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 820
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 617 SALVLYYVHTQLPSRPTFASAVGIGVS 697
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 563 LIGYLKSGSNKS 598
>gb|DR163107.1|DR163107 RTFE1_41_B01.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_41_B01_A029 3', mRNA sequence
Length = 824
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +1
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 403 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 510
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 307 SALVLYYVHTQLPSRPTFASAVGIGVS 387
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +1
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 253 LIGYLKSGSNKS 288
>gb|CO198787.1|CO198787 GEO1_16_B12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_16_B12_A029 5', mRNA sequence
Length = 807
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 644 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 751
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 548 SALVLYYVHTQLPSRPTFASAVGIGVS 628
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 494 LIGYLKSGSNKS 529
>gb|CF668284.1|CF668284 RTCNT1_35_C03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_C03_A029 5', mRNA sequence
Length = 806
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 590 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 697
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 494 SALVLYYVHTQLPSRPTFASAVGIGVS 574
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 440 LIGYLKSGSNKS 475
>gb|CF387874.1|CF387874 RTDR1_18_D10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_18_D10_A015 5', mRNA
sequence
Length = 793
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +1
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 595 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 702
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 499 SALVLYYVHTQLPSRPTFASAVGIGVS 579
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +1
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 445 LIGYLKSGSNKS 480
>gb|CF385428.1|CF385428 RTDR1_3_H09.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_3_H09_A015 5', mRNA
sequence
Length = 789
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 605 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 712
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 509 SALVLYYVHTQLPSRPTFASAVGIGVS 589
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 455 LIGYLKSGSNKS 490
>gb|CF473594.1|CF473594 RTWW2_3_F08.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_F08_A021 5', mRNA sequence
Length = 781
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +1
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 667 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 774
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 571 SALVLYYVHTQLPSRPTFASAVGIGVS 651
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +1
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 517 LIGYLKSGSNKS 552
>gb|CO198727.1|CO198727 GEO1_16_B12.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_16_B12_A029 3', mRNA sequence
Length = 780
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +3
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 411 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 518
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +3
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 315 SALVLYYVHTQLPSRPTFASAVGIGVS 395
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +3
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 261 LIGYLKSGSNKS 296
>gb|CO165965.1|CO165965 FLD1_58_H05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_H05_A029 3', mRNA sequence
Length = 779
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 413 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 520
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 317 SALVLYYVHTQLPSRPTFASAVGIGVS 397
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 263 LIGYLKSGSNKS 298
>gb|CF668205.1|CF668205 RTCNT1_35_C03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_C03_A029 3', mRNA sequence
Length = 771
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 401 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 508
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 305 SALVLYYVHTQLPSRPTFASAVGIGVS 385
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 251 LIGYLKSGSNKS 286
>gb|DR011301.1|DR011301 HEAT1_4_H09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_4_H09_A029 5', mRNA sequence
Length = 731
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +1
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 604 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 711
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 508 SALVLYYVHTQLPSRPTFASAVGIGVS 588
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +1
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 454 LIGYLKSGSNKS 489
>gb|CO159187.1|CO159187 FLD1_12_B12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_B12_A029 3', mRNA sequence
Length = 668
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 326 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 433
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 230 SALVLYYVHTQLPSRPTFASAVGIGVS 310
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 176 LIGYLKSGSNKS 211
>gb|CO198223.1|CO198223 GEO1_12_D05.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_12_D05_A029 3', mRNA sequence
Length = 648
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +1
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 277 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 384
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 181 SALVLYYVHTQLPSRPTFASAVGIGVS 261
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +1
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 127 LIGYLKSGSNKS 162
>gb|DR080503.1|DR080503 RTFEPL1_23_D09.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_23_D09_A029 3', mRNA sequence
Length = 645
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 236 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 343
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 140 SALVLYYVHTQLPSRPTFASAVGIGVS 220
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 86 LIGYLKSGSNKS 121
>gb|CF387329.1|CF387329 RTDR1_12_D05.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_D05_A015 3', mRNA
sequence
Length = 628
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FPAGVVS VSL+M GGY G S
Sbjct: 269 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGILRS 376
Score = 50.1 bits (103), Expect(3) = 2e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 173 SALVLYYVHTQLPSRPTFASAVGIGVS 253
Score = 25.8 bits (50), Expect(3) = 2e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 119 LIGYLKSGSNKS 154
>gb|BX679928.1|BX679928 BX679928 RS Pinus pinaster cDNA clone RS36E12, mRNA sequence
Length = 525
Score = 62.9 bits (131), Expect(3) = 4e-021
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +2 / +1
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXG 553
VMGSRFKKSGK+FPAGVVS VSL+M GGY G
Sbjct: 373 VMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHG 468
Score = 49.6 bits (102), Expect(3) = 4e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 277 SALVLYYVHTQLPARPTFASAVGMGVS 357
Score = 25.8 bits (50), Expect(3) = 4e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +1
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 223 LIGYLKSGSNKS 258
>gb|CO198290.1|CO198290 GEO1_12_D05.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_12_D05_A029 5', mRNA sequence
Length = 776
Score = 61.6 bits (128), Expect(3) = 7e-021
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +2 / +2
Query: 458 VMGSRFKKSGKMFPAGVVSHVSLVMVGGYYXGFFFS 565
VMGSRFKKSGK+FP GVVS VSL+M GGY G S
Sbjct: 662 VMGSRFKKSGKVFPCGVVSLVSLIMTGGYLHGILRS 769
Score = 50.1 bits (103), Expect(3) = 7e-021
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +1 / +2
Query: 361 SALVLYFVHTQLPKKKVFASSIGLGIS 441
SALVLY+VHTQLP + FAS++G+G+S
Sbjct: 566 SALVLYYVHTQLPSRPTFASAVGIGVS 646
Score = 25.8 bits (50), Expect(3) = 7e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / +2
Query: 325 LVGYMKSGSQKS 360
L+GY+KSGS KS
Sbjct: 512 LIGYLKSGSNKS 547
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 337,644,644
Number of Sequences: 355925
Number of extensions: 4817115
Number of successful extensions: 57134
Number of sequences better than 1.0e-020: 56
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7815394080
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)