TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.2
(602 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO365335.1|CO365335 RTK1_25_C04.b1_A029 Roots minus pota... 242 2e-066
gb|CO362646.1|CO362646 RTK1_5_A12.b1_A029 Roots minus potas... 242 2e-066
gb|CX648134.1|CX648134 COLD1_26_F04.g1_A029 Root cold Pinus... 242 2e-066
gb|DR117521.1|DR117521 RTMG1_7_B02.g1_A029 Roots minus magn... 242 2e-066
gb|DT628616.1|DT628616 EST1155186 Subtracted pine embryo li... 234 6e-064
gb|DN612750.1|DN612750 EST965800 Subtracted pine embryo lib... 233 8e-064
gb|BQ702215.1|BQ702215 NXSI_126_C02_F NXSI (Nsf Xylem Side ... 242 2e-063
gb|CX715121.1|CX715121 RTPQ1_31_B11.g1_A032 Roots treated w... 240 6e-063
gb|CF664723.1|CF664723 RTCNT1_11_C09.g1_A029 Root control P... 229 1e-062
gb|BX251301.1|BX251301 BX251301 Pinus pinaster differenciat... 219 5e-059
gb|CO164009.1|CO164009 FLD1_45_E07.b1_A029 Root flooded Pin... 218 2e-058
gb|CO164159.1|CO164159 FLD1_46_E06.b1_A029 Root flooded Pin... 218 2e-058
gb|CO162943.1|CO162943 FLD1_38_A12.g1_A029 Root flooded Pin... 218 2e-058
gb|CF390785.1|CF390785 RTDR2_17_H10.g1_A021 Loblolly pine r... 218 2e-058
gb|CX714248.1|CX714248 RTPQ1_19_F08.g1_A032 Roots treated w... 218 2e-058
gb|CF390389.1|CF390389 RTDR2_19_E10.b1_A021 Loblolly pine r... 218 2e-058
gb|DR691682.1|DR691682 EST1081769 Normalized pine embryo li... 216 8e-058
gb|CO162341.1|CO162341 FLD1_34_E09.g1_A029 Root flooded Pin... 214 2e-057
gb|DT631002.1|DT631002 EST1145933 Normalized pine embryo li... 219 2e-057
gb|DR388029.1|DR388029 RTHG1_25_F01.g1_A029 Roots plus adde... 220 9e-057
gb|CF673040.1|CF673040 RTCNT1_75_D10.g1_A029 Root control P... 216 8e-056
gb|DR072816.1|DR072816 RTDK1_28_F08.g1_A029 Roots, dark Pin... 214 4e-055
gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo li... 204 2e-054
gb|AW065152.1|AW065152 ST40C10 Pine TriplEx shoot tip libra... 206 9e-053
gb|CO167405.1|CO167405 FLD1_68_F03.g1_A029 Root flooded Pin... 129 1e-051
gb|DR165496.1|DR165496 RTPHOS1_5_A09.g1_A029 Roots minus ph... 129 1e-051
gb|DR181347.1|DR181347 RTMNUT1_38_G12.b2_A029 Roots minus m... 129 1e-051
gb|CO361729.1|CO361729 NDL2_6_E02.g1_A029 Needles control 2... 129 1e-051
gb|DR686844.1|DR686844 EST1076922 Normalized pine embryo li... 127 4e-051
gb|DR690385.1|DR690385 EST1080471 Normalized pine embryo li... 123 5e-050
gb|DT636376.1|DT636376 EST1151307 Normalized pine embryo li... 123 5e-050
gb|BF778569.1|BF778569 NXSI_088_C01_F NXSI (Nsf Xylem Side ... 197 7e-050
gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus... 185 7e-049
gb|BX678563.1|BX678563 BX678563 RS Pinus pinaster cDNA clon... 119 2e-048
gb|AW290281.1|AW290281 NXNV017E04F Nsf Xylem Normal wood Ve... 122 3e-048
gb|CD026916.1|CD026916 NXNV017E04 Nsf Xylem Normal wood Ver... 122 3e-048
gb|BM492781.1|BM492781 NXRV_030_H12_F NXRV (Nsf Xylem Root ... 120 2e-047
gb|DN608896.1|DN608896 EST961946 Subtracted pine embryo lib... 183 1e-045
gb|DN610140.1|DN610140 EST963190 Subtracted pine embryo lib... 183 1e-045
gb|DN610212.1|DN610212 EST963262 Subtracted pine embryo lib... 183 1e-045
gb|BF778688.1|BF778688 NXSI_090_G06_F NXSI (Nsf Xylem Side ... 181 5e-045
gb|BG317734.1|BG317734 NXPV_005_A11_F NXPV (Nsf Xylem Plani... 110 2e-044
gb|CO161310.1|CO161310 FLD1_28_B01.b1_A029 Root flooded Pin... 129 4e-042
gb|BF778482.1|BF778482 NXSI_085_C06_F NXSI (Nsf Xylem Side ... 103 2e-041
gb|DR681922.1|DR681922 EST1071997 Normalized pine embryo li... 166 1e-040
gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added... 144 7e-037
gb|CO166121.1|CO166121 FLD1_59_B03.g1_A029 Root flooded Pin... 133 1e-033
gb|DR118504.1|DR118504 RTMG1_17_A03.g1_A029 Roots minus mag... 129 1e-030
gb|CV032506.1|CV032506 RTNACL1_8_D03.g1_A029 Roots plus add... 118 2e-029
gb|DR102278.1|DR102278 STRR1_79_G05.g1_A033 Stem Response R... 87 4e-027
gb|CF671022.1|CF671022 RTCNT1_54_D12.b1_A029 Root control P... 121 4e-027
gb|BX679459.1|BX679459 BX679459 RS Pinus pinaster cDNA clon... 77 3e-026
gb|DR092029.1|DR092029 RTAL1_25_E06.g1_A029 Roots plus adde... 104 3e-025
gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compr... 104 2e-024
gb|AW870271.1|AW870271 NXNV_128_F09_F Nsf Xylem Normal wood... 80 4e-023
gb|DN609845.1|DN609845 EST962895 Subtracted pine embryo lib... 101 5e-021
>gb|CO365335.1|CO365335 RTK1_25_C04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_C04_A029 3', mRNA sequence
Length = 827
Score = 242 bits (523), Expect(2) = 2e-066
Identities = 83/129 (64%), Positives = 100/129 (77%)
Frame = +3 / -1
Query: 186 NPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPR 365
N + EK +KG + YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PR
Sbjct: 488 NAESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPR 309
Query: 366 HEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXX 545
H +Q+V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+SKQQYHC+
Sbjct: 308 HNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGG 129
Query: 546 XENSFHCSK 572
+N FHC K
Sbjct: 128 RDNFFHCFK 102
Score = 143 bits (306), Expect = 1e-033
Identities = 70/128 (54%), Positives = 76/128 (59%)
Frame = -2 / +1
Query: 568 EQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNE 389
+QWK+ S Q YCC E SSS SL QKYFPMQTPQLIHT TSCSV +E
Sbjct: 106 KQWKKLSLPPVLHIPHPSQWYCCFEISSSNSLQVSQKYFPMQTPQLIHT**TSCSVSQSE 285
Query: 388 HTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T RG+SCL L EF SL QC QSK SLQ GAL+RHL L*C P C P S
Sbjct: 286 QMTLWRLCRGTSCLCWGLTLTEFFASL*QCLQSKTSLQHGALIRHLRL*CEQPYCKYPLS 465
Query: 208 NFS*SSGF 185
+FS S F
Sbjct: 466 SFSKLSAF 489
Score = 109 bits (233), Expect = 2e-023
Identities = 54/121 (44%), Positives = 77/121 (63%)
Frame = -1 / +3
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F VE I+PA+ STY+TS+ V+LLF DII++ A T+VLPHA+ ++T+L ++L S T+
Sbjct: 102 FKAVEEIIPATSSTYTTSITVVLLF*DIIIK*LASFTKVLPHADATVNTHLMNILLSVTK 281
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* + L ++ M L +N + IL FIV +S IKN IA S ASP IM I+ F
Sbjct: 282 *TNDPLEIVSRNIMSLLGLNIDRILCFIVTMSTIKNLIATWRSNTASPFIM*ATIL*ISF 461
Query: 212 L 210
+
Sbjct: 462 V 464
Score = 108 bits (230), Expect = 4e-023
Identities = 52/114 (45%), Positives = 65/114 (57%)
Frame = -3 / +2
Query: 567 NSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMS 388
+SGRN PC +FYI+HI S AV R+H + C H+STSPC+ +*Y L QCH ++
Sbjct: 107 SSGRNYPCHQFYIYHIHHSGIAVLRYHHQIACKFHKSTSPCRRHS*YTLDEHLAQCHKVN 286
Query: 387 IQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHS 226
P E H S * NS HC +V NQK HC+ L GIS YNV H+
Sbjct: 287 K*PFGDCVEEHHVSVGA*H*QNSLLHCDNVYNQKPHCNMAL*YGISVYNVSNHT 448
Score = 30.4 bits (60), Expect(2) = 2e-066
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / -1
Query: 554 FLPLFKSGCCYSIALK 601
F FK GCCYSI LK
Sbjct: 119 FFHCFKCGCCYSIMLK 72
>gb|CO362646.1|CO362646 RTK1_5_A12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_5_A12_A029 3', mRNA sequence
Length = 809
Score = 242 bits (523), Expect(2) = 2e-066
Identities = 83/129 (64%), Positives = 100/129 (77%)
Frame = +3 / -2
Query: 186 NPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPR 365
N + EK +KG + YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PR
Sbjct: 541 NAESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPR 362
Query: 366 HEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXX 545
H +Q+V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+SKQQYHC+
Sbjct: 361 HNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGG 182
Query: 546 XENSFHCSK 572
+N FHC K
Sbjct: 181 RDNFFHCFK 155
Score = 143 bits (306), Expect = 1e-033
Identities = 70/128 (54%), Positives = 76/128 (59%)
Frame = -2 / +3
Query: 568 EQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNE 389
+QWK+ S Q YCC E SSS SL QKYFPMQTPQLIHT TSCSV +E
Sbjct: 159 KQWKKLSLPPVLHIPHPSQWYCCFEISSSNSLQVSQKYFPMQTPQLIHT**TSCSVSQSE 338
Query: 388 HTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T RG+SCL L EF SL QC QSK SLQ GAL+RHL L*C P C P S
Sbjct: 339 QMTLWRLCRGTSCLCWGLTLTEFFASL*QCLQSKTSLQHGALIRHLRL*CEQPYCKYPLS 518
Query: 208 NFS*SSGF 185
+FS S F
Sbjct: 519 SFSKLSAF 542
Score = 107 bits (228), Expect = 8e-023
Identities = 53/121 (43%), Positives = 77/121 (63%)
Frame = -1 / +2
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F VE I+PA+ STY+TS+ V+LLF DII++ A T+VLPHA+ ++T+L ++L S T+
Sbjct: 155 FKAVEEIIPATSSTYTTSITVVLLF*DIIIK*LASFTKVLPHADATVNTHLMNILLSVTK 334
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* + L ++ M L +N + IL FIV +S IK+ IA S ASP IM I+ F
Sbjct: 335 *TNDPLEIVSRNIMSLLGLNIDRILCFIVTMSTIKDLIATWRSNTASPFIM*ATIL*ISF 514
Query: 212 L 210
+
Sbjct: 515 V 517
Score = 106 bits (227), Expect = 1e-022
Identities = 51/114 (44%), Positives = 65/114 (57%)
Frame = -3 / +1
Query: 567 NSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMS 388
+SGRN PC +FYI+HI S AV R+H + C H+STSPC+ +*Y L QCH ++
Sbjct: 160 SSGRNYPCHQFYIYHIHHSGIAVLRYHHQIACKFHKSTSPCRRHS*YTLDEHLAQCHKVN 339
Query: 387 IQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHS 226
P E H S * NS HC +V NQ+ HC+ L GIS YNV H+
Sbjct: 340 K*PFGDCVEEHHVSVGA*H*QNSLLHCDNVYNQRPHCNMAL*YGISVYNVSNHT 501
Score = 30.4 bits (60), Expect(2) = 2e-066
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / -2
Query: 554 FLPLFKSGCCYSIALK 601
F FK GCCYSI LK
Sbjct: 172 FFHCFKCGCCYSIMLK 125
>gb|CX648134.1|CX648134 COLD1_26_F04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_26_F04_A029 5', mRNA sequence
Length = 797
Score = 242 bits (523), Expect(2) = 2e-066
Identities = 83/129 (64%), Positives = 100/129 (77%)
Frame = +3 / +3
Query: 186 NPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPR 365
N + EK +KG + YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PR
Sbjct: 156 NAESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPR 335
Query: 366 HEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXX 545
H +Q+V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+SKQQYHC+
Sbjct: 336 HNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGG 515
Query: 546 XENSFHCSK 572
+N FHC K
Sbjct: 516 RDNFFHCFK 542
Score = 143 bits (306), Expect = 1e-033
Identities = 70/128 (54%), Positives = 76/128 (59%)
Frame = -2 / -2
Query: 568 EQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNE 389
+QWK+ S Q YCC E SSS SL QKYFPMQTPQLIHT TSCSV +E
Sbjct: 538 KQWKKLSLPPVLHIPHPSQWYCCFEISSSNSLQVSQKYFPMQTPQLIHT**TSCSVSQSE 359
Query: 388 HTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T RG+SCL L EF SL QC QSK SLQ GAL+RHL L*C P C P S
Sbjct: 358 QMTLWRLCRGTSCLCWGLTLTEFFASL*QCLQSKTSLQHGALIRHLRL*CEQPYCKYPLS 179
Query: 208 NFS*SSGF 185
+FS S F
Sbjct: 178 SFSKLSAF 155
Score = 107 bits (228), Expect = 8e-023
Identities = 53/121 (43%), Positives = 77/121 (63%)
Frame = -1 / -1
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F VE I+PA+ STY+TS+ V+LLF DII++ A T+VLPHA+ ++T+L ++L S T+
Sbjct: 542 FKAVEEIIPATSSTYTTSITVVLLF*DIIIK*LASFTKVLPHADATVNTHLMNILLSVTK 363
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* + L ++ M L +N + IL FIV +S IK+ IA S ASP IM I+ F
Sbjct: 362 *TNDPLEIVSRNIMSLLGLNIDRILCFIVTMSTIKDLIATWRSNTASPFIM*ATIL*ISF 183
Query: 212 L 210
+
Sbjct: 182 V 180
Score = 106 bits (227), Expect = 1e-022
Identities = 51/114 (44%), Positives = 65/114 (57%)
Frame = -3 / -3
Query: 567 NSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMS 388
+SGRN PC +FYI+HI S AV R+H + C H+STSPC+ +*Y L QCH ++
Sbjct: 537 SSGRNYPCHQFYIYHIHHSGIAVLRYHHQIACKFHKSTSPCRRHS*YTLDEHLAQCHKVN 358
Query: 387 IQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHS 226
P E H S * NS HC +V NQ+ HC+ L GIS YNV H+
Sbjct: 357 K*PFGDCVEEHHVSVGA*H*QNSLLHCDNVYNQRPHCNMAL*YGISVYNVSNHT 196
Score = 30.4 bits (60), Expect(2) = 2e-066
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / +3
Query: 554 FLPLFKSGCCYSIALK 601
F FK GCCYSI LK
Sbjct: 525 FFHCFKCGCCYSIMLK 572
>gb|DR117521.1|DR117521 RTMG1_7_B02.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_B02_A029 5', mRNA sequence
Length = 783
Score = 242 bits (523), Expect(2) = 2e-066
Identities = 83/129 (64%), Positives = 100/129 (77%)
Frame = +3 / +3
Query: 186 NPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPR 365
N + EK +KG + YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PR
Sbjct: 243 NAESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPR 422
Query: 366 HEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXX 545
H +Q+V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+SKQQYHC+
Sbjct: 423 HNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGG 602
Query: 546 XENSFHCSK 572
+N FHC K
Sbjct: 603 RDNFFHCFK 629
Score = 143 bits (306), Expect = 1e-033
Identities = 70/128 (54%), Positives = 76/128 (59%)
Frame = -2 / -3
Query: 568 EQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNE 389
+QWK+ S Q YCC E SSS SL QKYFPMQTPQLIHT TSCSV +E
Sbjct: 625 KQWKKLSLPPVLHIPHPSQWYCCFEISSSNSLQVSQKYFPMQTPQLIHT**TSCSVSQSE 446
Query: 388 HTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T RG+SCL L EF SL QC QSK SLQ GAL+RHL L*C P C P S
Sbjct: 445 QMTLWRLCRGTSCLCWGLTLTEFFASL*QCLQSKTSLQHGALIRHLRL*CEQPYCKYPLS 266
Query: 208 NFS*SSGF 185
+FS S F
Sbjct: 265 SFSKLSAF 242
Score = 107 bits (228), Expect = 8e-023
Identities = 53/121 (43%), Positives = 77/121 (63%)
Frame = -1 / -2
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F VE I+PA+ STY+TS+ V+LLF DII++ A T+VLPHA+ ++T+L ++L S T+
Sbjct: 629 FKAVEEIIPATSSTYTTSITVVLLF*DIIIK*LASFTKVLPHADATVNTHLMNILLSVTK 450
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* + L ++ M L +N + IL FIV +S IK+ IA S ASP IM I+ F
Sbjct: 449 *TNDPLEIVSRNIMSLLGLNIDRILCFIVTMSTIKDLIATWRSNTASPFIM*ATIL*ISF 270
Query: 212 L 210
+
Sbjct: 269 V 267
Score = 106 bits (227), Expect = 1e-022
Identities = 51/114 (44%), Positives = 65/114 (57%)
Frame = -3 / -1
Query: 567 NSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMS 388
+SGRN PC +FYI+HI S AV R+H + C H+STSPC+ +*Y L QCH ++
Sbjct: 624 SSGRNYPCHQFYIYHIHHSGIAVLRYHHQIACKFHKSTSPCRRHS*YTLDEHLAQCHKVN 445
Query: 387 IQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHS 226
P E H S * NS HC +V NQ+ HC+ L GIS YNV H+
Sbjct: 444 K*PFGDCVEEHHVSVGA*H*QNSLLHCDNVYNQRPHCNMAL*YGISVYNVSNHT 283
Score = 30.4 bits (60), Expect(2) = 2e-066
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / +3
Query: 554 FLPLFKSGCCYSIALK 601
F FK GCCYSI LK
Sbjct: 612 FFHCFKCGCCYSIMLK 659
>gb|DT628616.1|DT628616 EST1155186 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD002 5' end, mRNA sequence
Length = 602
Score = 234 bits (505), Expect(2) = 6e-064
Identities = 81/127 (63%), Positives = 97/127 (76%)
Frame = +3 / -1
Query: 192 DDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHE 371
+ EK +KG + YGC HY+RRCRIRAPCCNE FDCRHCHNE KNS+ + +RH++P H
Sbjct: 500 ESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEAFDCRHCHNEAKNSVNVKPQQRHDVP*HN 321
Query: 372 VQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXE 551
+Q+V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+SKQQYHC+ +
Sbjct: 320 LQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGGRD 141
Query: 552 NSFHCSK 572
N FHC K
Sbjct: 140 NFFHCFK 120
Score = 139 bits (298), Expect = 2e-032
Identities = 67/123 (54%), Positives = 74/123 (60%)
Frame = -2 / +1
Query: 568 EQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNE 389
+QWK+ S Q YCC E SSS SL QKYFPMQTPQLIHT TSCSV +E
Sbjct: 124 KQWKKLSLPPVLHIPHPSQWYCCFEISSSNSLQVSQKYFPMQTPQLIHT**TSCSVSQSE 303
Query: 388 HTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T +G+SCL L EF SL QC QSK SLQ GAL+RHL L*C P C P S
Sbjct: 304 QMTLWRLCQGTSCLCWGLTLTEFFASL*QCLQSKASLQHGALIRHLRL*CEQPYCKYPLS 483
Query: 208 NFS 200
+FS
Sbjct: 484 SFS 492
Score = 110 bits (235), Expect = 8e-024
Identities = 54/121 (44%), Positives = 77/121 (63%)
Frame = -1 / +3
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F VE I+PA+ STY+TS+ V+LLF DII++ A T+VLPHA+ ++T+L ++L S T+
Sbjct: 120 FKAVEEIIPATSSTYTTSITVVLLF*DIIIK*LASFTKVLPHADATVNTHLMNILLSVTK 299
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* + L ++ M L +N + IL FIV +S IK IA R S ASP IM I+ F
Sbjct: 300 *TNDPLEIVSRNIMSLLGLNIDRILCFIVTMSTIKGLIATRRSNTASPFIM*ATIL*ISF 479
Query: 212 L 210
+
Sbjct: 480 V 482
Score = 106 bits (227), Expect = 1e-022
Identities = 51/114 (44%), Positives = 65/114 (57%)
Frame = -3 / +2
Query: 567 NSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMS 388
+SGRN PC +FYI+HI S AV R+H + C H+STSPC+ +*Y L QCH ++
Sbjct: 125 SSGRNYPCHQFYIYHIHHSGIAVLRYHHQIACKFHKSTSPCRRHS*YTLDEHLAQCHKVN 304
Query: 387 IQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHS 226
P E H S * NS HC +V NQ+ HC+ L GIS YNV H+
Sbjct: 305 K*PFGDCVKEHHVSVGA*H*QNSLLHCDNVYNQRPHCNTAL*YGISVYNVSNHT 466
Score = 30.4 bits (60), Expect(2) = 6e-064
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / -1
Query: 554 FLPLFKSGCCYSIALK 601
F FK GCCYSI LK
Sbjct: 137 FFHCFKCGCCYSIMLK 90
>gb|DN612750.1|DN612750 EST965800 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABJ58, mRNA sequence
Length = 605
Score = 233 bits (504), Expect(2) = 8e-064
Identities = 81/124 (65%), Positives = 96/124 (77%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
EK +KG + YGC HY+RRCRIRAPCCNE FDCRHCHNE KNS+ + +RH++P H +Q+
Sbjct: 118 EKLDKGYLQYGCSHYKRRCRIRAPCCNEAFDCRHCHNEAKNSVNVKPQQRHDVP*HNLQR 297
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+SKQQYHC+ +N F
Sbjct: 298 VICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGGRDNFF 477
Query: 561 HCSK 572
HC K
Sbjct: 478 HCFK 489
Score = 139 bits (298), Expect = 2e-032
Identities = 67/123 (54%), Positives = 74/123 (60%)
Frame = -2 / -1
Query: 568 EQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNE 389
+QWK+ S Q YCC E SSS SL QKYFPMQTPQLIHT TSCSV +E
Sbjct: 485 KQWKKLSLPPVLHIPHPSQWYCCFEISSSNSLQVSQKYFPMQTPQLIHT**TSCSVSQSE 306
Query: 388 HTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T +G+SCL L EF SL QC QSK SLQ GAL+RHL L*C P C P S
Sbjct: 305 QMTLWRLCQGTSCLCWGLTLTEFFASL*QCLQSKASLQHGALIRHLRL*CEQPYCKYPLS 126
Query: 208 NFS 200
+FS
Sbjct: 125 SFS 117
Score = 110 bits (235), Expect = 8e-024
Identities = 54/121 (44%), Positives = 77/121 (63%)
Frame = -1 / -3
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F VE I+PA+ STY+TS+ V+LLF DII++ A T+VLPHA+ ++T+L ++L S T+
Sbjct: 489 FKAVEEIIPATSSTYTTSITVVLLF*DIIIK*LASFTKVLPHADATVNTHLMNILLSVTK 310
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* + L ++ M L +N + IL FIV +S IK IA R S ASP IM I+ F
Sbjct: 309 *TNDPLEIVSRNIMSLLGLNIDRILCFIVTMSTIKGLIATRRSNTASPFIM*ATIL*ISF 130
Query: 212 L 210
+
Sbjct: 129 V 127
Score = 106 bits (227), Expect = 1e-022
Identities = 51/114 (44%), Positives = 65/114 (57%)
Frame = -3 / -2
Query: 567 NSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMS 388
+SGRN PC +FYI+HI S AV R+H + C H+STSPC+ +*Y L QCH ++
Sbjct: 484 SSGRNYPCHQFYIYHIHHSGIAVLRYHHQIACKFHKSTSPCRRHS*YTLDEHLAQCHKVN 305
Query: 387 IQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHS 226
P E H S * NS HC +V NQ+ HC+ L GIS YNV H+
Sbjct: 304 K*PFGDCVKEHHVSVGA*H*QNSLLHCDNVYNQRPHCNTAL*YGISVYNVSNHT 143
Score = 30.4 bits (60), Expect(2) = 8e-064
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 554 FLPLFKSGCCYSIALK 601
F FK GCCYSI LK
Sbjct: 472 FFHCFKCGCCYSIMLK 519
>gb|BQ702215.1|BQ702215 NXSI_126_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_126_C02 5' similar to Arabidopsis thaliana
sequence At5g22920 PGPD14 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 543
Score = 242 bits (523), Expect = 2e-063
Identities = 84/129 (65%), Positives = 101/129 (78%)
Frame = +3 / +1
Query: 186 NPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPR 365
N + EK +KG + YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PR
Sbjct: 73 NAESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPR 252
Query: 366 HEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXX 545
H +Q+V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+SKQQYHC+
Sbjct: 253 HNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCXICRTGG 432
Query: 546 XENSFHCSK 572
+N FHC K
Sbjct: 433 RDNFFHCFK 459
Score = 143 bits (307), Expect = 1e-033
Identities = 71/128 (55%), Positives = 77/128 (60%)
Frame = -2 / -2
Query: 568 EQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNE 389
+QWK+ S Q YCC E SSS SL QKYFPMQTPQLIHT TSCSV +E
Sbjct: 455 KQWKKLSLPPVLHIXHPSQWYCCFEISSSNSLQVSQKYFPMQTPQLIHT**TSCSVSQSE 276
Query: 388 HTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T RG+SCL L EF SL QC QSK SLQ GAL+RHL L*C P C P S
Sbjct: 275 QMTLWRLCRGTSCLCWGLTLTEFFASL*QCLQSKTSLQHGALIRHLRL*CEQPYCKYPLS 96
Query: 208 NFS*SSGF 185
+FS S F
Sbjct: 95 SFSKLSAF 72
Score = 106 bits (227), Expect = 1e-022
Identities = 53/121 (43%), Positives = 76/121 (62%)
Frame = -1 / -1
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F VE I+PA+ STY TS+ V+LLF DII++ A T+VLPHA+ ++T+L ++L S T+
Sbjct: 459 FKAVEEIIPATSSTYXTSITVVLLF*DIIIK*LASFTKVLPHADATVNTHLMNILLSVTK 280
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* + L ++ M L +N + IL FIV +S IK+ IA S ASP IM I+ F
Sbjct: 279 *TNDPLEIVSRNIMSLLGLNIDRILCFIVTMSTIKDLIATWRSNTASPFIM*ATIL*ISF 100
Query: 212 L 210
+
Sbjct: 99 V 97
Score = 105 bits (223), Expect = 4e-022
Identities = 51/114 (44%), Positives = 64/114 (56%)
Frame = -3 / -3
Query: 567 NSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMS 388
+SGRN PC +FYI HI S AV R+H + C H+STSPC+ +*Y L QCH ++
Sbjct: 454 SSGRNYPCHQFYIXHIHHSGIAVLRYHHQIACKFHKSTSPCRRHS*YTLDEHLAQCHKVN 275
Query: 387 IQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHS 226
P E H S * NS HC +V NQ+ HC+ L GIS YNV H+
Sbjct: 274 K*PFGDCVEEHHVSVGA*H*QNSLLHCDNVYNQRPHCNMAL*YGISVYNVSNHT 113
>gb|CX715121.1|CX715121 RTPQ1_31_B11.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_31_B11_A032 5', mRNA sequence
Length = 540
Score = 240 bits (519), Expect = 6e-063
Identities = 82/129 (63%), Positives = 100/129 (77%)
Frame = +3 / +1
Query: 186 NPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPR 365
N + EK +KG + YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PR
Sbjct: 154 NAESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPR 333
Query: 366 HEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXX 545
H +Q+V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+S+QQYHC+
Sbjct: 334 HNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISEQQYHCDGCGICRTGG 513
Query: 546 XENSFHCSK 572
+N FHC K
Sbjct: 514 RDNFFHCFK 540
Score = 142 bits (304), Expect = 3e-033
Identities = 70/128 (54%), Positives = 76/128 (59%)
Frame = -2 / -2
Query: 568 EQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNE 389
+QWK+ S Q YCC E SSS SL QKYFPMQTPQLIHT TSCSV +E
Sbjct: 536 KQWKKLSLPPVLHIPHPSQWYCCSEISSSNSLQVSQKYFPMQTPQLIHT**TSCSVSQSE 357
Query: 388 HTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T RG+SCL L EF SL QC QSK SLQ GAL+RHL L*C P C P S
Sbjct: 356 QMTLWRLCRGTSCLCWGLTLTEFFASL*QCLQSKTSLQHGALIRHLRL*CEQPYCKYPLS 177
Query: 208 NFS*SSGF 185
+FS S F
Sbjct: 176 SFSKLSAF 153
Score = 109 bits (233), Expect = 2e-023
Identities = 54/121 (44%), Positives = 77/121 (63%)
Frame = -1 / -1
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F VE I+PA+ STY+TS+ V+LLF DII++ A T+VLPHA+ ++T+L ++L S T+
Sbjct: 540 FKAVEEIIPATSSTYTTSITVVLLF*DIIIK*LASFTKVLPHADATVNTHLMNILLSVTK 361
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* + L ++ M L +N + IL FIV +S IKN IA S ASP IM I+ F
Sbjct: 360 *TNDPLEIVSRNIMSLLGLNIDRILCFIVTMSTIKNLIATWRSNTASPFIM*ATIL*ISF 181
Query: 212 L 210
+
Sbjct: 180 V 178
Score = 108 bits (230), Expect = 4e-023
Identities = 52/114 (45%), Positives = 65/114 (57%)
Frame = -3 / -3
Query: 567 NSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMS 388
+SGRN PC +FYI+HI S AV R+H + C H+STSPC+ +*Y L QCH ++
Sbjct: 535 SSGRNYPCHQFYIYHIHHSGIAVLRYHHQIACKFHKSTSPCRRHS*YTLDEHLAQCHKVN 356
Query: 387 IQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHS 226
P E H S * NS HC +V NQK HC+ L GIS YNV H+
Sbjct: 355 K*PFGDCVEEHHVSVGA*H*QNSLLHCDNVYNQKPHCNMAL*YGISVYNVSNHT 194
>gb|CF664723.1|CF664723 RTCNT1_11_C09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_11_C09_A029 5', mRNA sequence
Length = 673
Score = 229 bits (495), Expect(2) = 1e-062
Identities = 78/117 (66%), Positives = 93/117 (79%)
Frame = +3 / +1
Query: 222 MHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSLCG 401
+ YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PRH +Q+V+CSLC
Sbjct: 4 LQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPRHNLQRVICSLCD 183
Query: 402 TEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFHCSK 572
TEQ+V QVCINCGVCMGKYFC CKLFDDD+SKQQYHC+ +N FHC K
Sbjct: 184 TEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGGRDNFFHCFK 354
Score = 133 bits (284), Expect = 1e-030
Identities = 64/115 (55%), Positives = 69/115 (60%)
Frame = -2 / -3
Query: 568 EQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNE 389
+QWK+ S Q YCC E SSS SL QKYFPMQTPQLIHT TSCSV +E
Sbjct: 350 KQWKKLSLPPVLHIPHPSQWYCCFEISSSNSLQVSQKYFPMQTPQLIHT**TSCSVSQSE 171
Query: 388 HTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*C 224
T RG+SCL L EF SL QC QSK SLQ GAL+RHL L*C P C
Sbjct: 170 QMTLWRLCRGTSCLCWGLTLTEFFASL*QCLQSKTSLQHGALIRHLRL*CEQPYC 6
Score = 109 bits (232), Expect = 2e-023
Identities = 52/111 (46%), Positives = 73/111 (65%)
Frame = -1 / -2
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F VE I+PA+ STY+TS+ V+LLF DII++ A T+VLPHA+ ++T+L ++L S T+
Sbjct: 354 FKAVEEIIPATSSTYTTSITVVLLF*DIIIK*LASFTKVLPHADATVNTHLMNILLSVTK 175
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIM 240
* + L ++ M L +N + IL FIV +S IKN IA S ASP IM
Sbjct: 174 *TNDPLEIVSRNIMSLLGLNIDRILCFIVTMSTIKNLIATWRSNTASPFIM 22
Score = 108 bits (230), Expect = 4e-023
Identities = 52/114 (45%), Positives = 65/114 (57%)
Frame = -3 / -1
Query: 567 NSGRNSPCLRFYIFHIRCSDTAV*RHHRRRVCTNHRSTSPCKHRN*YILVAPPVQCHTMS 388
+SGRN PC +FYI+HI S AV R+H + C H+STSPC+ +*Y L QCH ++
Sbjct: 349 SSGRNYPCHQFYIYHIHHSGIAVLRYHHQIACKFHKSTSPCRRHS*YTLDEHLAQCHKVN 170
Query: 387 IQPAALHGVEVHASSFYQF*WNS*FHCGSVGNQKFHCSKELLCGISFYNVDTHS 226
P E H S * NS HC +V NQK HC+ L GIS YNV H+
Sbjct: 169 K*PFGDCVEEHHVSVGA*H*QNSLLHCDNVYNQKPHCNMAL*YGISVYNVSNHT 8
Score = 30.4 bits (60), Expect(2) = 1e-062
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 554 FLPLFKSGCCYSIALK 601
F FK GCCYSI LK
Sbjct: 337 FFHCFKCGCCYSIMLK 384
>gb|BX251301.1|BX251301 BX251301 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP047H07, mRNA sequence
Length = 675
Score = 219 bits (472), Expect(2) = 5e-059
Identities = 75/119 (63%), Positives = 91/119 (76%)
Frame = +3 / +1
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSL 395
G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++V+CSL
Sbjct: 169 GCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRKVICSL 348
Query: 396 CGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFHCSK 572
C TEQ+V+Q C+ CGVCMGKYFC C FDD+ SKQQYHC+ +N FHC K
Sbjct: 349 CRTEQDVQQTCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGNDNFFHCYK 525
Score = 140 bits (300), Expect = 9e-033
Identities = 64/117 (54%), Positives = 73/117 (62%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 518 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIQTPQVTQVC*TSCSVLQSEQ 339
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 338 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALI*HLRR*CEHPYCMHP 168
Score = 100 bits (214), Expect = 7e-021
Identities = 47/117 (40%), Positives = 75/117 (64%)
Frame = -1 / -1
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STS+ V+LLF ++++E A T+VL H NT + L ++LFS+T+
Sbjct: 525 FITVEEIIVATSSANSTSITVVLLF*VLVIKEIAFFTKVLSHTNTTSNAGLLNILFSSTK 346
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVH 222
* NL +FMA M + +++ + I I+ + +K+FI RS Y SP+++ T I+H
Sbjct: 345 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTRSPYLTSPAVV*TSILH 175
Score = 29.0 bits (57), Expect(2) = 5e-059
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCYSI LK
Sbjct: 508 FFHCYKCGCCYSIQLK 555
>gb|CO164009.1|CO164009 FLD1_45_E07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_E07_A029 3', mRNA sequence
Length = 909
Score = 218 bits (471), Expect(2) = 2e-058
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = +3 / -3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 706 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 527
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGVCMGKYFC C FDD+ SKQQYHC+ +N F
Sbjct: 526 VICSLCRTEQDVQQNCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFF 347
Query: 561 HCSK 572
HC K
Sbjct: 346 HCYK 335
Score = 139 bits (299), Expect = 1e-032
Identities = 64/117 (54%), Positives = 73/117 (62%)
Frame = -2 / +3
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 342 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIQTPQVTQFC*TSCSVLQSEQ 521
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 522 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 692
Score = 106 bits (227), Expect = 1e-022
Identities = 51/122 (41%), Positives = 78/122 (63%)
Frame = -1 / +2
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STSV V+LLF ++++E A TEVL H NT + L ++LFS+T+
Sbjct: 335 FITVEEIIFAASSANSTSVTVVLLF*VLVIKEIAFFTEVLSHTNTTSNAVLLNILFSSTK 514
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* NL +FMA M + +++ + I I+ + +K+FI RS Y ASP+++ T I+H
Sbjct: 515 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTRSPYLASPAVV*TSILHASL 694
Query: 212 LK 207
+K
Sbjct: 695 IK 700
Score = 27.6 bits (54), Expect(2) = 2e-058
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / -3
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCY+I LK
Sbjct: 352 FFHCYKCGCCYAIQLK 305
>gb|CO164159.1|CO164159 FLD1_46_E06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_E06_A029 3', mRNA sequence
Length = 911
Score = 218 bits (471), Expect(2) = 2e-058
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = +3 / -3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 708 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 529
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGVCMGKYFC C FDD+ SKQQYHC+ +N F
Sbjct: 528 VICSLCRTEQDVQQNCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFF 349
Query: 561 HCSK 572
HC K
Sbjct: 348 HCYK 337
Score = 139 bits (299), Expect = 1e-032
Identities = 64/117 (54%), Positives = 73/117 (62%)
Frame = -2 / +2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 344 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIQTPQVTQFC*TSCSVLQSEQ 523
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 524 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 694
Score = 106 bits (227), Expect = 1e-022
Identities = 51/122 (41%), Positives = 78/122 (63%)
Frame = -1 / +1
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STSV V+LLF ++++E A TEVL H NT + L ++LFS+T+
Sbjct: 337 FITVEEIIFAASSANSTSVTVVLLF*VLVIKEIAFFTEVLSHTNTTSNAVLLNILFSSTK 516
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* NL +FMA M + +++ + I I+ + +K+FI RS Y ASP+++ T I+H
Sbjct: 517 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTRSPYLASPAVV*TSILHASL 696
Query: 212 LK 207
+K
Sbjct: 697 IK 702
Score = 27.6 bits (54), Expect(2) = 2e-058
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / -3
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCY+I LK
Sbjct: 354 FFHCYKCGCCYAIQLK 307
>gb|CO162943.1|CO162943 FLD1_38_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_A12_A029 5', mRNA sequence
Length = 804
Score = 218 bits (471), Expect(2) = 2e-058
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = +3 / +3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 195 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 374
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGVCMGKYFC C FDD+ SKQQYHC+ +N F
Sbjct: 375 VICSLCRTEQDVQQNCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFF 554
Query: 561 HCSK 572
HC K
Sbjct: 555 HCYK 566
Score = 139 bits (299), Expect = 1e-032
Identities = 64/117 (54%), Positives = 73/117 (62%)
Frame = -2 / -3
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 559 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIQTPQVTQFC*TSCSVLQSEQ 380
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 379 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 209
Score = 106 bits (227), Expect = 1e-022
Identities = 51/122 (41%), Positives = 78/122 (63%)
Frame = -1 / -2
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STSV V+LLF ++++E A TEVL H NT + L ++LFS+T+
Sbjct: 566 FITVEEIIFAASSANSTSVTVVLLF*VLVIKEIAFFTEVLSHTNTTSNAVLLNILFSSTK 387
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* NL +FMA M + +++ + I I+ + +K+FI RS Y ASP+++ T I+H
Sbjct: 386 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTRSPYLASPAVV*TSILHASL 207
Query: 212 LK 207
+K
Sbjct: 206 IK 201
Score = 27.6 bits (54), Expect(2) = 2e-058
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / +3
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCY+I LK
Sbjct: 549 FFHCYKCGCCYAIQLK 596
>gb|CF390785.1|CF390785 RTDR2_17_H10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_H10_A021 5', mRNA
sequence
Length = 798
Score = 218 bits (471), Expect(2) = 2e-058
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 73 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 252
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGVCMGKYFC C FDD+ SKQQYHC+ +N F
Sbjct: 253 VICSLCRTEQDVQQNCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFF 432
Query: 561 HCSK 572
HC K
Sbjct: 433 HCYK 444
Score = 139 bits (299), Expect = 1e-032
Identities = 64/117 (54%), Positives = 73/117 (62%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 437 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIQTPQVTQFC*TSCSVLQSEQ 258
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 257 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 87
Score = 103 bits (219), Expect = 1e-021
Identities = 50/122 (40%), Positives = 77/122 (63%)
Frame = -1 / -1
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STSV V+LLF ++++E A TEVL H NT + L ++LFS+T+
Sbjct: 444 FITVEEIIFAASSANSTSVTVVLLF*VLVIKEIAFFTEVLSHTNTTSNAVLLNILFSSTK 265
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* NL +FMA M + +++ + I I+ + +K+FI S Y ASP+++ T I+H
Sbjct: 264 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTWSPYLASPAVV*TSILHASL 85
Query: 212 LK 207
+K
Sbjct: 84 IK 79
Score = 27.6 bits (54), Expect(2) = 2e-058
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCY+I LK
Sbjct: 427 FFHCYKCGCCYAIELK 474
>gb|CX714248.1|CX714248 RTPQ1_19_F08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_19_F08_A032 5', mRNA sequence
Length = 693
Score = 218 bits (471), Expect(2) = 2e-058
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = +3 / +2
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 95 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 274
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGVCMGKYFC C FDD+ SKQQYHC+ +N F
Sbjct: 275 VICSLCRTEQDVQQNCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFF 454
Query: 561 HCSK 572
HC K
Sbjct: 455 HCYK 466
Score = 139 bits (299), Expect = 1e-032
Identities = 64/117 (54%), Positives = 73/117 (62%)
Frame = -2 / -1
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 459 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIQTPQVTQFC*TSCSVLQSEQ 280
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 279 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 109
Score = 106 bits (227), Expect = 1e-022
Identities = 51/122 (41%), Positives = 78/122 (63%)
Frame = -1 / -3
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STSV V+LLF ++++E A TEVL H NT + L ++LFS+T+
Sbjct: 466 FITVEEIIFAASSANSTSVTVVLLF*VLVIKEIAFFTEVLSHTNTTSNAVLLNILFSSTK 287
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* NL +FMA M + +++ + I I+ + +K+FI RS Y ASP+++ T I+H
Sbjct: 286 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTRSPYLASPAVV*TSILHASL 107
Query: 212 LK 207
+K
Sbjct: 106 IK 101
Score = 27.6 bits (54), Expect(2) = 2e-058
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / +2
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCY+I LK
Sbjct: 449 FFHCYKCGCCYAIQLK 496
>gb|CF390389.1|CF390389 RTDR2_19_E10.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_E10_A021 3', mRNA
sequence
Length = 667
Score = 218 bits (471), Expect(2) = 2e-058
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = +3 / -3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 530 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 351
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGVCMGKYFC C FDD+ SKQQYHC+ +N F
Sbjct: 350 VICSLCRTEQDVQQNCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFF 171
Query: 561 HCSK 572
HC K
Sbjct: 170 HCYK 159
Score = 139 bits (299), Expect = 1e-032
Identities = 64/117 (54%), Positives = 73/117 (62%)
Frame = -2 / +1
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 166 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIQTPQVTQFC*TSCSVLQSEQ 345
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 346 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 516
Score = 103 bits (219), Expect = 1e-021
Identities = 50/122 (40%), Positives = 77/122 (63%)
Frame = -1 / +3
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STSV V+LLF ++++E A TEVL H NT + L ++LFS+T+
Sbjct: 159 FITVEEIIFAASSANSTSVTVVLLF*VLVIKEIAFFTEVLSHTNTTSNAVLLNILFSSTK 338
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* NL +FMA M + +++ + I I+ + +K+FI S Y ASP+++ T I+H
Sbjct: 339 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTWSPYLASPAVV*TSILHASL 518
Query: 212 LK 207
+K
Sbjct: 519 IK 524
Score = 27.6 bits (54), Expect(2) = 2e-058
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / -3
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCY+I LK
Sbjct: 176 FFHCYKCGCCYAIELK 129
>gb|DR691682.1|DR691682 EST1081769 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADB54 3' end, mRNA sequence
Length = 582
Score = 216 bits (466), Expect(2) = 8e-058
Identities = 74/124 (59%), Positives = 92/124 (74%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HY RRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 7 DTLNQGCMQYGCSHYHRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 186
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGVCMGKYFC C FDD+ SKQQYHC+ +N F
Sbjct: 187 VICSLCRTEQDVQQNCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFF 366
Query: 561 HCSK 572
HC K
Sbjct: 367 HCYK 378
Score = 139 bits (299), Expect = 1e-032
Identities = 64/117 (54%), Positives = 73/117 (62%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 371 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIQTPQVTQFC*TSCSVLQSEQ 192
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 191 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRW*CEHPYCMHP 21
Score = 105 bits (224), Expect = 3e-022
Identities = 51/122 (41%), Positives = 77/122 (63%)
Frame = -1 / -1
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STSV V+LLF ++++E A TEVL H NT + L ++LFS+T+
Sbjct: 378 FITVEEIIFAASSANSTSVTVVLLF*VLVIKEIAFFTEVLSHTNTTSNAVLLNILFSSTK 199
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* NL +FMA M + +++ + I I+ + +K+FI RS Y ASP ++ T I+H
Sbjct: 198 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTRSPYLASPVVV*TSILHASL 19
Query: 212 LK 207
+K
Sbjct: 18 IK 13
Score = 27.6 bits (54), Expect(2) = 8e-058
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCY+I LK
Sbjct: 361 FFHCYKCGCCYAIQLK 408
>gb|CO162341.1|CO162341 FLD1_34_E09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_E09_A029 5', mRNA sequence
Length = 858
Score = 214 bits (461), Expect(2) = 2e-057
Identities = 74/124 (59%), Positives = 92/124 (74%)
Frame = +3 / +2
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 209 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 388
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGV MGKYFC C FDD+ SKQQYHC+ +N F
Sbjct: 389 VICSLCRTEQDVQQNCVTCGVSMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFF 568
Query: 561 HCSK 572
HC K
Sbjct: 569 HCYK 580
Score = 138 bits (296), Expect = 3e-032
Identities = 63/117 (53%), Positives = 73/117 (62%)
Frame = -2 / -1
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP++TPQ+ C TSCSV +E
Sbjct: 573 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIETPQVTQFC*TSCSVLQSEQ 394
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 393 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 223
Score = 106 bits (226), Expect = 1e-022
Identities = 51/122 (41%), Positives = 78/122 (63%)
Frame = -1 / -3
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STSV V+LLF ++++E A TEVL H NT + L ++LFS+T+
Sbjct: 580 FITVEEIIFAASSANSTSVTVVLLF*VLVIKEIAFFTEVLSHRNTTSNAVLLNILFSSTK 401
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* NL +FMA M + +++ + I I+ + +K+FI RS Y ASP+++ T I+H
Sbjct: 400 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTRSPYLASPAVV*TSILHASL 221
Query: 212 LK 207
+K
Sbjct: 220 IK 215
Score = 29.0 bits (57), Expect(2) = 2e-057
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2 / +2
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCYSI LK
Sbjct: 563 FFHCYKCGCCYSIQLK 610
>gb|DT631002.1|DT631002 EST1145933 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF376 3' end, mRNA sequence
Length = 775
Score = 219 bits (472), Expect(2) = 2e-057
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 313 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 492
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGVCMGKYFC C FDD+ SKQQYHC+ +N F
Sbjct: 493 VICSLCRTEQDVQQNCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFF 672
Query: 561 HCSK 572
HC K
Sbjct: 673 HCHK 684
Score = 139 bits (299), Expect = 1e-032
Identities = 64/117 (54%), Positives = 73/117 (62%)
Frame = -2 / -3
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 677 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIQTPQVTQFC*TSCSVLQSEQ 498
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 497 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 327
Score = 106 bits (227), Expect = 1e-022
Identities = 51/122 (41%), Positives = 78/122 (63%)
Frame = -1 / -2
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STSV V+LLF ++++E A TEVL H NT + L ++LFS+T+
Sbjct: 684 FMTVEEIIFAASSANSTSVTVVLLF*VLVIKEIAFFTEVLSHTNTTSNAVLLNILFSSTK 505
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* NL +FMA M + +++ + I I+ + +K+FI RS Y ASP+++ T I+H
Sbjct: 504 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTRSPYLASPAVV*TSILHASL 325
Query: 212 LK 207
+K
Sbjct: 324 IK 319
Score = 23.5 bits (45), Expect(2) = 2e-057
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2 / +1
Query: 554 FLPLFKSGCCYSIAL 598
F K GCCY+I L
Sbjct: 667 FFHCHKCGCCYAIEL 711
>gb|DR388029.1|DR388029 RTHG1_25_F01.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_25_F01_A029 5', mRNA sequence
Length = 783
Score = 220 bits (474), Expect = 9e-057
Identities = 76/130 (58%), Positives = 96/130 (73%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 199 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 378
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGV MGKYFC C FDD+ SKQQYHC+ +N F
Sbjct: 379 VICSLCRTEQDVQQNCVTCGVSMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFF 558
Query: 561 HCSKVDVAIQ 590
HC K D+ +Q
Sbjct: 559 HCYKCDLLVQ 588
Score = 138 bits (296), Expect = 3e-032
Identities = 63/117 (53%), Positives = 73/117 (62%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP++TPQ+ C TSCSV +E
Sbjct: 563 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIETPQVTQFC*TSCSVLQSEQ 384
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 383 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 213
Score = 109 bits (233), Expect = 2e-023
Identities = 53/128 (41%), Positives = 81/128 (63%)
Frame = -1 / -1
Query: 590 LNSNIHF*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHL 411
L+ I F TVE I+ A+ S STSV V+LLF ++++E A TEVL H NT + L ++
Sbjct: 588 LDKQITFITVEEIIFAASSANSTSVTVVLLF*VLVIKEIAFFTEVLSHRNTTSNAVLLNI 409
Query: 410 LFSATQ*AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTP 231
LFS+T+* NL +FMA M + +++ + I I+ + +K+FI RS Y ASP+++ T
Sbjct: 408 LFSSTK*TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTRSPYLASPAVV*TS 229
Query: 230 IVHYPFLK 207
I+H +K
Sbjct: 228 ILHASLIK 205
>gb|CF673040.1|CF673040 RTCNT1_75_D10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_D10_A029 5', mRNA sequence
Length = 553
Score = 216 bits (467), Expect = 8e-056
Identities = 73/105 (69%), Positives = 88/105 (83%)
Frame = +3 / +2
Query: 186 NPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPR 365
N + EK +KG + YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PR
Sbjct: 239 NAESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPR 418
Query: 366 HEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSK 500
H +Q+V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+SK
Sbjct: 419 HNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISK 553
Score = 125 bits (267), Expect = 3e-028
Identities = 62/104 (59%), Positives = 66/104 (63%)
Frame = -2 / -2
Query: 496 ETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILSILMEFL 317
E SSS SL QKYFPMQTPQLIHT TSCSV +E T RG+SCL L EF
Sbjct: 549 EISSSNSLQVSQKYFPMQTPQLIHT**TSCSVSQSEQMTLWRLCRGTSCLCWGLTLTEFF 370
Query: 316 VSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFSNFS*SSGF 185
SL QC QSK SLQ GAL+RHL L*C P C P S+FS S F
Sbjct: 369 ASL*QCLQSKTSLQHGALIRHLRL*CEQPYCKYPLSSFSKLSAF 238
>gb|DR072816.1|DR072816 RTDK1_28_F08.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_28_F08_A029 5', mRNA sequence
Length = 527
Score = 214 bits (462), Expect = 4e-055
Identities = 74/124 (59%), Positives = 92/124 (74%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 142 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 321
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+CSLC TEQ+V+Q C+ CGVCMGKYFC C FDD+ S QQYHC+ +N F
Sbjct: 322 VICSLCRTEQDVQQNCVTCGVCMGKYFCEKCNFFDDEDS*QQYHCDGCGICRTGGKDNFF 501
Query: 561 HCSK 572
HC K
Sbjct: 502 HCYK 513
Score = 139 bits (298), Expect = 2e-032
Identities = 64/117 (54%), Positives = 73/117 (62%)
Frame = -2 / -1
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 506 QWKKLSLPPVLQIPHPSQWYCCYESSSSKKLHFSQKYFPIQTPQVTQFC*TSCSVLQSEQ 327
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 326 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 156
Score = 104 bits (221), Expect = 7e-022
Identities = 50/122 (40%), Positives = 77/122 (63%)
Frame = -1 / -3
Query: 572 F*TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ 393
F TVE I+ A+ S STSV V+LL ++++E A TEVL H NT + L ++LFS+T+
Sbjct: 513 FITVEEIIFAASSANSTSVTVVLLL*VLVIKEIAFFTEVLSHTNTTSNAVLLNILFSSTK 334
Query: 392 *AYNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVHYPF 213
* NL +FMA M + +++ + I I+ + +K+FI RS Y ASP+++ T I+H
Sbjct: 333 *TDNLSNFMARYIMSVKWMDIH*IFGLIMTMPTVKDFITTRSPYLASPAVV*TSILHASL 154
Query: 212 LK 207
+K
Sbjct: 153 IK 148
>gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGX65 3' end, mRNA sequence
Length = 844
Score = 204 bits (441), Expect(2) = 2e-054
Identities = 70/113 (61%), Positives = 86/113 (76%)
Frame = +3 / +3
Query: 234 CPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSLCGTEQE 413
C HY RRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++V+CSLC TEQ+
Sbjct: 3 CSHYHRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRKVICSLCRTEQD 182
Query: 414 VRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFHCSK 572
V+Q C+ CGVCMGKYFC C FDD+ SKQQYHC+ +N FHC K
Sbjct: 183 VQQNCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFFHCYK 341
Score = 132 bits (282), Expect = 3e-030
Identities = 61/111 (54%), Positives = 69/111 (62%)
Frame = -2 / -1
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP+QTPQ+ C TSCSV +E
Sbjct: 334 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIQTPQVTQFC*TSCSVLQSEQ 155
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGH 233
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *C H
Sbjct: 154 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRW*CEH 2
Score = 27.6 bits (54), Expect(2) = 2e-054
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / +3
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCY+I LK
Sbjct: 324 FFHCYKCGCCYAIQLK 371
>gb|AW065152.1|AW065152 ST40C10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST40C10, mRNA sequence
Length = 588
Score = 206 bits (445), Expect = 9e-053
Identities = 70/106 (66%), Positives = 87/106 (82%)
Frame = +3 / +3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 153 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 332
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCN 518
V+CSLC TEQ+V+Q C+ CGV MGKYFC CK FDD+ SKQQYHC+
Sbjct: 333 VICSLCRTEQDVQQNCVTCGVSMGKYFCEKCKFFDDEDSKQQYHCD 470
Score = 134 bits (288), Expect = 4e-031
Identities = 66/129 (51%), Positives = 80/129 (62%)
Frame = -2 / -3
Query: 601 LQRN*IATSTFEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHT 422
LQ + +A F ++ S Q YCC E+SSSK+LH QKYFP++TPQ+
Sbjct: 553 LQLDGVAKXXFXPVEKLSXPPVLQXPHPSQWYCCFESSSSKNLHFSQKYFPIETPQVTQF 374
Query: 421 CRTSCSVPHNEHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL* 242
C TSCSV +E T TSWRG+SCL +EFL SL QC QSK SLQ GAL+ HL *
Sbjct: 373 C*TSCSVLQSEQITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALIWHLRR* 194
Query: 241 CGHP*CIIP 215
C HP C+ P
Sbjct: 193 CEHPYCMHP 167
>gb|CO167405.1|CO167405 FLD1_68_F03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_F03_A029 5', mRNA sequence
Length = 873
Score = 129 bits (276), Expect(3) = 1e-051
Identities = 47/79 (59%), Positives = 57/79 (72%)
Frame = +3 / +2
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 260 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 439
Query: 516 NXXXXXXXXXXENSFHCSK 572
+N FHC K
Sbjct: 440 ADCGICRVGGRDNFFHCQK 496
Score = 89.0 bits (188), Expect(3) = 1e-051
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / +2
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 128 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 259
Score = 80.3 bits (169), Expect(2) = 2e-021
Identities = 36/73 (49%), Positives = 40/73 (54%)
Frame = -2 / -1
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*YCC E SSSK+LH QKY P+ TPQ TC T CSV
Sbjct: 495 FWQWKKLSRPPTLHMPQSAQ*YCCFEISSSKNLHVEQKYSPILTPQFSQTCLTFCSVSQR 316
Query: 391 EHTTCCTSWRGSS 353
E T T + GSS
Sbjct: 315 EQITRSTLYLGSS 277
Score = 41.8 bits (85), Expect(2) = 2e-021
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -2 / -1
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
+ SL QC QS ISLQQGA +RH LL* P I P
Sbjct: 246 MASL*QCLQS*ISLQQGARIRHRLL*WAQPWSIFP 142
Score = 23.5 bits (45), Expect(3) = 1e-051
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2 / +2
Query: 569 KSGCCYSIALK 601
K GCCY+++L+
Sbjct: 494 KCGCCYTVSLQ 526
>gb|DR165496.1|DR165496 RTPHOS1_5_A09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_5_A09_A029 5', mRNA sequence
Length = 830
Score = 129 bits (276), Expect(3) = 1e-051
Identities = 47/79 (59%), Positives = 57/79 (72%)
Frame = +3 / +1
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 208 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 387
Query: 516 NXXXXXXXXXXENSFHCSK 572
+N FHC K
Sbjct: 388 ADCGICRVGGRDNFFHCQK 444
Score = 89.0 bits (188), Expect(3) = 1e-051
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 76 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 207
Score = 80.3 bits (169), Expect(2) = 2e-021
Identities = 36/73 (49%), Positives = 40/73 (54%)
Frame = -2 / -1
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*YCC E SSSK+LH QKY P+ TPQ TC T CSV
Sbjct: 443 FWQWKKLSRPPTLHMPQSAQ*YCCFEISSSKNLHVEQKYSPILTPQFSQTCLTFCSVSQR 264
Query: 391 EHTTCCTSWRGSS 353
E T T + GSS
Sbjct: 263 EQITRSTLYLGSS 225
Score = 41.8 bits (85), Expect(2) = 2e-021
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -2 / -1
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
+ SL QC QS ISLQQGA +RH LL* P I P
Sbjct: 194 MASL*QCLQS*ISLQQGARIRHRLL*WAQPWSIFP 90
Score = 23.5 bits (45), Expect(3) = 1e-051
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2 / +1
Query: 569 KSGCCYSIALK 601
K GCCY+++L+
Sbjct: 442 KCGCCYTVSLQ 474
>gb|DR181347.1|DR181347 RTMNUT1_38_G12.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_38_G12_A029 3', mRNA sequence
Length = 808
Score = 129 bits (276), Expect(3) = 1e-051
Identities = 47/79 (59%), Positives = 57/79 (72%)
Frame = +3 / -1
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 469 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 290
Query: 516 NXXXXXXXXXXENSFHCSK 572
+N FHC K
Sbjct: 289 ADCGICRVGGRDNFFHCQK 233
Score = 89.0 bits (188), Expect(3) = 1e-051
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / -1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 601 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 470
Score = 80.3 bits (169), Expect(2) = 2e-021
Identities = 36/73 (49%), Positives = 40/73 (54%)
Frame = -2 / +3
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*YCC E SSSK+LH QKY P+ TPQ TC T CSV
Sbjct: 234 FWQWKKLSRPPTLHMPQSAQ*YCCFEISSSKNLHVEQKYSPILTPQFSQTCLTFCSVSQR 413
Query: 391 EHTTCCTSWRGSS 353
E T T + GSS
Sbjct: 414 EQITRSTLYLGSS 452
Score = 41.8 bits (85), Expect(2) = 2e-021
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -2 / +3
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
+ SL QC QS ISLQQGA +RH LL* P I P
Sbjct: 483 MASL*QCLQS*ISLQQGARIRHRLL*WAQPWSIFP 587
Score = 23.5 bits (45), Expect(3) = 1e-051
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 569 KSGCCYSIALK 601
K GCCY+++L+
Sbjct: 235 KCGCCYTVSLQ 203
>gb|CO361729.1|CO361729 NDL2_6_E02.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_E02_A029 5', mRNA sequence
Length = 777
Score = 129 bits (276), Expect(3) = 1e-051
Identities = 47/79 (59%), Positives = 57/79 (72%)
Frame = +3 / +2
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 197 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 376
Query: 516 NXXXXXXXXXXENSFHCSK 572
+N FHC K
Sbjct: 377 ADCGICRVGGRDNFFHCQK 433
Score = 89.0 bits (188), Expect(3) = 1e-051
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / +2
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 65 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 196
Score = 80.3 bits (169), Expect(2) = 2e-021
Identities = 36/73 (49%), Positives = 40/73 (54%)
Frame = -2 / -1
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*YCC E SSSK+LH QKY P+ TPQ TC T CSV
Sbjct: 432 FWQWKKLSRPPTLHMPQSAQ*YCCFEISSSKNLHVEQKYSPILTPQFSQTCLTFCSVSQR 253
Query: 391 EHTTCCTSWRGSS 353
E T T + GSS
Sbjct: 252 EQITRSTLYLGSS 214
Score = 41.8 bits (85), Expect(2) = 2e-021
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -2 / -1
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
+ SL QC QS ISLQQGA +RH LL* P I P
Sbjct: 183 MASL*QCLQS*ISLQQGARIRHRLL*WAQPWSIFP 79
Score = 23.5 bits (45), Expect(3) = 1e-051
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2 / +2
Query: 569 KSGCCYSIALK 601
K GCCY+++L+
Sbjct: 431 KCGCCYTVSLQ 463
>gb|DR686844.1|DR686844 EST1076922 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABK47 3' end, mRNA sequence
Length = 710
Score = 127 bits (272), Expect(3) = 4e-051
Identities = 46/79 (58%), Positives = 56/79 (70%)
Frame = +3 / +3
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHE PR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 360 DPLLRHEFPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 539
Query: 516 NXXXXXXXXXXENSFHCSK 572
+N FHC K
Sbjct: 540 ADCGICRVGGRDNFFHCQK 596
Score = 89.0 bits (188), Expect(3) = 4e-051
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / +3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 228 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 359
Score = 79.0 bits (166), Expect(2) = 4e-021
Identities = 35/73 (47%), Positives = 40/73 (54%)
Frame = -2 / -2
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*YCC E SSSK+LH QKY P+ TPQ TC T CSV
Sbjct: 595 FWQWKKLSRPPTLHMPQSAQ*YCCFEISSSKNLHVEQKYSPILTPQFSQTCLTFCSVSQR 416
Query: 391 EHTTCCTSWRGSS 353
E T T + G+S
Sbjct: 415 EQITRSTLYLGNS 377
Score = 41.8 bits (85), Expect(2) = 4e-021
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -2 / -2
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
+ SL QC QS ISLQQGA +RH LL* P I P
Sbjct: 346 MASL*QCLQS*ISLQQGARIRHRLL*WAQPWSIFP 242
Score = 23.5 bits (45), Expect(3) = 4e-051
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 569 KSGCCYSIALK 601
K GCCY+++L+
Sbjct: 594 KCGCCYTVSLQ 626
>gb|DR690385.1|DR690385 EST1080471 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACU46 3' end, mRNA sequence
Length = 912
Score = 123 bits (264), Expect(3) = 5e-050
Identities = 46/79 (58%), Positives = 56/79 (70%)
Frame = +3 / +1
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+ SLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 286 DPLLRHELPRYKVERVIRSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 465
Query: 516 NXXXXXXXXXXENSFHCSK 572
+N FHC K
Sbjct: 466 ADCGICRVGGRDNFFHCQK 522
Score = 89.0 bits (188), Expect(3) = 5e-050
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 154 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 285
Score = 80.3 bits (169), Expect(2) = 2e-021
Identities = 36/73 (49%), Positives = 40/73 (54%)
Frame = -2 / -2
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*YCC E SSSK+LH QKY P+ TPQ TC T CSV
Sbjct: 521 FWQWKKLSRPPTLHMPQSAQ*YCCFEISSSKNLHVEQKYSPILTPQFSQTCLTFCSVSQR 342
Query: 391 EHTTCCTSWRGSS 353
E T T + GSS
Sbjct: 341 ERITRSTLYLGSS 303
Score = 41.8 bits (85), Expect(2) = 2e-021
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -2 / -2
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
+ SL QC QS ISLQQGA +RH LL* P I P
Sbjct: 272 MASL*QCLQS*ISLQQGARIRHRLL*WAQPWSIFP 168
Score = 23.5 bits (45), Expect(3) = 5e-050
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2 / +1
Query: 569 KSGCCYSIALK 601
K GCCY+++L+
Sbjct: 520 KCGCCYTVSLQ 552
>gb|DT636376.1|DT636376 EST1151307 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGR13 3' end, mRNA sequence
Length = 842
Score = 123 bits (264), Expect(3) = 5e-050
Identities = 46/79 (58%), Positives = 56/79 (70%)
Frame = +3 / +3
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+ SLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 294 DPLLRHELPRYKVERVIRSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 473
Query: 516 NXXXXXXXXXXENSFHCSK 572
+N FHC K
Sbjct: 474 ADCGICRVGGRDNFFHCQK 530
Score = 89.0 bits (188), Expect(3) = 5e-050
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / +3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 162 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 293
Score = 80.3 bits (169), Expect(2) = 2e-021
Identities = 36/73 (49%), Positives = 40/73 (54%)
Frame = -2 / -2
Query: 571 FEQWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHN 392
F QWK+ S Q*YCC E SSSK+LH QKY P+ TPQ TC T CSV
Sbjct: 529 FWQWKKLSRPPTLHMPQSAQ*YCCFEISSSKNLHVEQKYSPILTPQFSQTCLTFCSVSQR 350
Query: 391 EHTTCCTSWRGSS 353
E T T + GSS
Sbjct: 349 ERITRSTLYLGSS 311
Score = 41.8 bits (85), Expect(2) = 2e-021
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -2 / -2
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
+ SL QC QS ISLQQGA +RH LL* P I P
Sbjct: 280 MASL*QCLQS*ISLQQGARIRHRLL*WAQPWSIFP 176
Score = 23.5 bits (45), Expect(3) = 5e-050
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 569 KSGCCYSIALK 601
K GCCY+++L+
Sbjct: 528 KCGCCYTVSLQ 560
>gb|BF778569.1|BF778569 NXSI_088_C01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_088_C01 5' similar to Arabidopsis thaliana
sequence At5g22920 PGPD14 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 504
Score = 197 bits (424), Expect = 7e-050
Identities = 67/106 (63%), Positives = 81/106 (76%)
Frame = +3 / +2
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 158 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 337
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCN 518
+CSLC TEQ+V C CGVCM KYFC C FDD SKQQYHC+
Sbjct: 338 XICSLCRTEQDVXXNCXXCGVCMXKYFCEKCNFFDDXXSKQQYHCD 475
Score = 121 bits (258), Expect = 6e-027
Identities = 56/100 (56%), Positives = 62/100 (62%)
Frame = -2 / -1
Query: 514 Q*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILS 335
Q YCC E SSK LH QKYF +QTPQ TSCSV +E TSWRG+SCL
Sbjct: 471 QWYCCFEXXSSKKLHFSQKYFXIQTPQXXQFXXTSCSVLQSEQIXFRTSWRGTSCLSSGW 292
Query: 334 ILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
+EFL SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 291 TSIEFLASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 172
>gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_C03_A029 5', mRNA sequence
Length = 699
Score = 185 bits (398), Expect(2) = 7e-049
Identities = 64/106 (60%), Positives = 80/106 (75%)
Frame = +3 / +1
Query: 255 CRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSLCGTEQEVRQVCIN 434
C+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++V+CSLC TEQ+V+Q C+
Sbjct: 1 CQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRKVICSLCRTEQDVQQNCVT 180
Query: 435 CGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFHCSK 572
CGV MGKYFC C FDD+ SKQQYHC+ +N FHC K
Sbjct: 181 CGVSMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGKDNFFHCYK 318
Score = 121 bits (258), Expect = 6e-027
Identities = 55/102 (53%), Positives = 64/102 (62%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP++TPQ+ C TSCSV +E
Sbjct: 311 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIETPQVTQFC*TSCSVLQSEQ 132
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALM 260
T TSWRG+SCL +EFL SL QC QSK SLQ GAL+
Sbjct: 131 ITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQHGALI 6
Score = 29.0 bits (57), Expect(2) = 7e-049
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCYSI LK
Sbjct: 301 FFHCYKCGCCYSIQLK 348
>gb|BX678563.1|BX678563 BX678563 RS Pinus pinaster cDNA clone RS11C01, mRNA sequence
Length = 368
Score = 119 bits (255), Expect(3) = 2e-048
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = +3 / +3
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG YFC CK FDDD+SKQQYHC
Sbjct: 126 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGDYFCSTCKFFDDDISKQQYHC 305
Query: 516 N 518
+
Sbjct: 306 D 308
Score = 87.7 bits (185), Expect(3) = 2e-048
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = +3 / +3
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 9 GNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 125
Score = 22.6 bits (43), Expect(3) = 2e-048
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2 / +3
Query: 521 MWNM*NRRQGEFLPL 565
+W+M RR G F PL
Sbjct: 312 LWHMQGRRPG*FFPL 356
>gb|AW290281.1|AW290281 NXNV017E04F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV017E04 5', mRNA sequence
Length = 469
Score = 122 bits (262), Expect(2) = 3e-048
Identities = 45/76 (59%), Positives = 55/76 (72%)
Frame = +3 / +2
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 242 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 421
Query: 516 NXXXXXXXXXXENSFH 563
+N FH
Sbjct: 422 ADCGICRVGGRDNFFH 469
Score = 89.0 bits (188), Expect(2) = 3e-048
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / +2
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 110 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 241
>gb|CD026916.1|CD026916 NXNV017E04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV017E04 5' similar to Arabidopsis thaliana sequence
At5g18650 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 469
Score = 122 bits (262), Expect(2) = 3e-048
Identities = 45/76 (59%), Positives = 55/76 (72%)
Frame = +3 / +2
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 242 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 421
Query: 516 NXXXXXXXXXXENSFH 563
+N FH
Sbjct: 422 ADCGICRVGGRDNFFH 469
Score = 89.0 bits (188), Expect(2) = 3e-048
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / +2
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 110 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 241
>gb|BM492781.1|BM492781 NXRV_030_H12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_030_H12 5' similar to Arabidopsis thaliana
sequence At5g18650 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 488
Score = 120 bits (256), Expect(2) = 2e-047
Identities = 42/60 (70%), Positives = 51/60 (85%)
Frame = +3 / +3
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 249 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 428
Score = 89.0 bits (188), Expect(2) = 2e-047
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / +3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 117 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 248
Score = 79.4 bits (167), Expect(2) = 3e-021
Identities = 40/71 (56%), Positives = 44/71 (61%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q*YCC E SSSK+LH QKY P+ TPQ TC T CSV E
Sbjct: 478 QWKKXSXXXTLHMXQXAQ*YCCFEISSSKNLHVEQKYSPILTPQFSQTCLTFCSVSQREQ 299
Query: 385 TTCCTSWRGSS 353
T T + GSS
Sbjct: 298 ITRSTLYLGSS 266
Score = 41.8 bits (85), Expect(2) = 3e-021
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -2 / -2
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
+ SL QC QS ISLQQGA +RH LL* P I P
Sbjct: 235 MASL*QCLQS*ISLQQGARIRHRLL*WAQPWSIFP 131
>gb|DN608896.1|DN608896 EST961946 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA575, mRNA sequence
Length = 367
Score = 183 bits (394), Expect = 1e-045
Identities = 61/90 (67%), Positives = 75/90 (83%)
Frame = +3 / +1
Query: 186 NPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPR 365
N + EK +KG + YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PR
Sbjct: 97 NAESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPR 276
Query: 366 HEVQQVVCSLCGTEQEVRQVCINCGVCMGK 455
H +Q+V+CSLC TEQ+V QVCINCGVCMGK
Sbjct: 277 HNLQRVICSLCDTEQDVHQVCINCGVCMGK 366
Score = 107 bits (229), Expect = 6e-023
Identities = 53/90 (58%), Positives = 57/90 (63%)
Frame = -2 / -3
Query: 454 FPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQ 275
FPMQTPQLIHT TSCSV +E T RG+SCL L EF SL QC QSK SLQ
Sbjct: 365 FPMQTPQLIHT**TSCSVSQSEQMTLWRLCRGTSCLCWGLTLTEFFASL*QCLQSKTSLQ 186
Query: 274 QGALMRHLLL*CGHP*CIIPFSNFS*SSGF 185
GAL+RHL L*C P C P S+FS S F
Sbjct: 185 HGALIRHLRL*CEQPYCKYPLSSFSKLSAF 96
>gb|DN610140.1|DN610140 EST963190 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAM09, mRNA sequence
Length = 367
Score = 183 bits (394), Expect = 1e-045
Identities = 61/90 (67%), Positives = 75/90 (83%)
Frame = +3 / -1
Query: 186 NPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPR 365
N + EK +KG + YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PR
Sbjct: 271 NAESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPR 92
Query: 366 HEVQQVVCSLCGTEQEVRQVCINCGVCMGK 455
H +Q+V+CSLC TEQ+V QVCINCGVCMGK
Sbjct: 91 HNLQRVICSLCDTEQDVHQVCINCGVCMGK 2
Score = 107 bits (229), Expect = 6e-023
Identities = 53/90 (58%), Positives = 57/90 (63%)
Frame = -2 / +3
Query: 454 FPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQ 275
FPMQTPQLIHT TSCSV +E T RG+SCL L EF SL QC QSK SLQ
Sbjct: 3 FPMQTPQLIHT**TSCSVSQSEQMTLWRLCRGTSCLCWGLTLTEFFASL*QCLQSKTSLQ 182
Query: 274 QGALMRHLLL*CGHP*CIIPFSNFS*SSGF 185
GAL+RHL L*C P C P S+FS S F
Sbjct: 183 HGALIRHLRL*CEQPYCKYPLSSFSKLSAF 272
>gb|DN610212.1|DN610212 EST963262 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAM94, mRNA sequence
Length = 367
Score = 183 bits (394), Expect = 1e-045
Identities = 61/90 (67%), Positives = 75/90 (83%)
Frame = +3 / -1
Query: 186 NPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPR 365
N + EK +KG + YGC HY+RRCRIRAPCCNE+FDCRHCHNE KNS+ + +RH++PR
Sbjct: 271 NAESLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPR 92
Query: 366 HEVQQVVCSLCGTEQEVRQVCINCGVCMGK 455
H +Q+V+CSLC TEQ+V QVCINCGVCMGK
Sbjct: 91 HNLQRVICSLCDTEQDVHQVCINCGVCMGK 2
Score = 107 bits (229), Expect = 6e-023
Identities = 53/90 (58%), Positives = 57/90 (63%)
Frame = -2 / +3
Query: 454 FPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQ 275
FPMQTPQLIHT TSCSV +E T RG+SCL L EF SL QC QSK SLQ
Sbjct: 3 FPMQTPQLIHT**TSCSVSQSEQMTLWRLCRGTSCLCWGLTLTEFFASL*QCLQSKTSLQ 182
Query: 274 QGALMRHLLL*CGHP*CIIPFSNFS*SSGF 185
GAL+RHL L*C P C P S+FS S F
Sbjct: 183 HGALIRHLRL*CEQPYCKYPLSSFSKLSAF 272
>gb|BF778688.1|BF778688 NXSI_090_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_090_G06 5' similar to Arabidopsis thaliana
sequence At5g22920 PGPD14 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 454
Score = 181 bits (389), Expect = 5e-045
Identities = 60/96 (62%), Positives = 74/96 (77%)
Frame = +3 / +3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHE +
Sbjct: 159 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEXXK 338
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDD 488
V+CSLC TEQ+V+ C+ CGVCMGKY C C FDD
Sbjct: 339 VICSLCRTEQDVQXXCVTCGVCMGKYXCEKCNFFDD 446
Score = 111 bits (237), Expect = 4e-024
Identities = 52/94 (55%), Positives = 59/94 (62%)
Frame = -2 / -1
Query: 496 ETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILSILMEFL 317
E SSK LH Q YFP+QTPQ+ TSCSV +E T SWRG+SCL +EFL
Sbjct: 454 EXXSSKKLHFSQXYFPIQTPQVTQXX*TSCSVLQSEQITFXXSWRGTSCLSSGWTSIEFL 275
Query: 316 VSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIP 215
SL QC QSK SLQ GAL+ HL *C HP C+ P
Sbjct: 274 ASL*QCLQSKTSLQHGALIWHLRR*CEHPYCMHP 173
>gb|BG317734.1|BG317734 NXPV_005_A11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_005_A11 5' similar to Arabidopsis
thaliana sequence At5g18650 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 571
Score = 110 bits (235), Expect(2) = 2e-044
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +3 / +1
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YF CK FDDD+SKQQY C
Sbjct: 343 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFXXTCKFFDDDISKQQYXC 522
Score = 89.0 bits (188), Expect(2) = 2e-044
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DCRHCHNE + +K
Sbjct: 211 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK 342
>gb|CO161310.1|CO161310 FLD1_28_B01.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_28_B01_A029 3', mRNA sequence
Length = 916
Score = 129 bits (276), Expect(3) = 4e-042
Identities = 47/79 (59%), Positives = 57/79 (72%)
Frame = +3 / -2
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 843 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 664
Query: 516 NXXXXXXXXXXENSFHCSK 572
+N FHC K
Sbjct: 663 ADCGICRVGGRDNFFHCQK 607
Score = 57.0 bits (118), Expect(3) = 4e-042
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +3 / -2
Query: 261 IRAPCCNEIFDCRHCHNETKNSIK 332
IRAPCCNEI+DCRHCHNE + +K
Sbjct: 915 IRAPCCNEIYDCRHCHNEAMSHLK 844
Score = 23.5 bits (45), Expect(3) = 4e-042
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 569 KSGCCYSIALK 601
K GCCY+++L+
Sbjct: 609 KCGCCYTVSLQ 577
>gb|BF778482.1|BF778482 NXSI_085_C06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_085_C06 5' similar to Arabidopsis thaliana
sequence At5g18650 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 448
Score = 103 bits (219), Expect(2) = 2e-041
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +3 / +1
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQY 509
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK DDD+S QY
Sbjct: 265 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKXXDDDISXXQY 438
Score = 86.3 bits (182), Expect(2) = 2e-041
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRIRAPCCNEI+DC HCHNE + +K
Sbjct: 133 DRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCXHCHNEAMSHLK 264
>gb|DR681922.1|DR681922 EST1071997 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA375 3' end, mRNA sequence
Length = 558
Score = 166 bits (357), Expect = 1e-040
Identities = 55/84 (65%), Positives = 70/84 (83%)
Frame = +3 / +2
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
+ +G M YGC HYRRRC+IRAPCCNE+FDCRHCHNE KNS+ + + RH++PRHEV++
Sbjct: 305 DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRK 484
Query: 381 VVCSLCGTEQEVRQVCINCGVCMG 452
V+CSLC TEQ+V+Q C+ CGVCMG
Sbjct: 485 VICSLCRTEQDVQQNCVTCGVCMG 556
Score = 100 bits (213), Expect = 9e-021
Identities = 46/80 (57%), Positives = 53/80 (66%)
Frame = -2 / -1
Query: 454 FPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQ 275
FP+QTPQ+ C TSCSV +E T TSWRG+SCL +EFL SL QC QSK SLQ
Sbjct: 558 FPIQTPQVTQFC*TSCSVLQSEQITFRTSWRGTSCLSSGWTSIEFLASL*QCLQSKTSLQ 379
Query: 274 QGALMRHLLL*CGHP*CIIP 215
GAL+ HL *C HP C+ P
Sbjct: 378 HGALIWHLRR*CEHPYCMHP 319
>gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 5', mRNA sequence
Length = 749
Score = 144 bits (310), Expect(2) = 7e-037
Identities = 51/91 (56%), Positives = 65/91 (71%)
Frame = +3 / +2
Query: 300 HCHNETKNSIKIDKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKL 479
HCHNE KNS+ + + RH++PRHEV++V+CSLC TEQ+V+Q C+ CGV MGKYFC C
Sbjct: 2 HCHNEAKNSMDVHPLDRHDVPRHEVRKVICSLCRTEQDVQQNCVTCGVSMGKYFCEKCNF 181
Query: 480 FDDDVSKQQYHCNXXXXXXXXXXENSFHCSK 572
FDD+ SKQQYHC+ +N FHC K
Sbjct: 182 FDDEDSKQQYHCDGCGICRTGGKDNFFHCYK 274
Score = 103 bits (219), Expect = 1e-021
Identities = 46/89 (51%), Positives = 54/89 (60%)
Frame = -2 / -3
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+ S Q YCC E+SSSK LH QKYFP++TPQ+ C TSCSV +E
Sbjct: 267 QWKKLSLPPVLQIPHPSQWYCCFESSSSKKLHFSQKYFPIETPQVTQFC*TSCSVLQSEQ 88
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQC 299
T TSWRG+SCL +EFL SL QC
Sbjct: 87 ITFRTSWRGTSCLSSGWTSIEFLASL*QC 1
Score = 29.0 bits (57), Expect(2) = 7e-037
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2 / +2
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCYSI LK
Sbjct: 257 FFHCYKCGCCYSIQLK 304
>gb|CO166121.1|CO166121 FLD1_59_B03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_B03_A029 5', mRNA sequence
Length = 835
Score = 133 bits (284), Expect(2) = 1e-033
Identities = 47/73 (64%), Positives = 56/73 (76%)
Frame = +3 / +1
Query: 354 ELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXX 533
++PRH +Q+V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+SKQQYHC+
Sbjct: 1 DVPRHNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGIC 180
Query: 534 XXXXXENSFHCSK 572
+N FHC K
Sbjct: 181 RTGGRDNFFHCFK 219
Score = 30.4 bits (60), Expect(2) = 1e-033
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 554 FLPLFKSGCCYSIALK 601
F FK GCCYSI LK
Sbjct: 202 FFHCFKCGCCYSIMLK 249
>gb|DR118504.1|DR118504 RTMG1_17_A03.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_A03_A029 5', mRNA sequence
Length = 641
Score = 129 bits (276), Expect(2) = 1e-030
Identities = 47/79 (59%), Positives = 57/79 (72%)
Frame = +3 / +2
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D + RHELPR++V++V+CSLC TEQ V+QVC NCGV MG+YFC CK FDDD+SKQQYHC
Sbjct: 35 DPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGEYFCSTCKFFDDDISKQQYHC 214
Query: 516 NXXXXXXXXXXENSFHCSK 572
+N FHC K
Sbjct: 215 ADCGICRVGGRDNFFHCQK 271
Score = 23.5 bits (45), Expect(2) = 1e-030
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2 / +2
Query: 569 KSGCCYSIALK 601
K GCCY+++L+
Sbjct: 269 KCGCCYTVSLQ 301
>gb|CV032506.1|CV032506 RTNACL1_8_D03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_8_D03_A029 5', mRNA sequence
Length = 388
Score = 118 bits (252), Expect(2) = 2e-029
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +3 / +3
Query: 378 QVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENS 557
+V+CSLC TEQ+V QVCINCGVCMGKYFC CKLFDDD+SKQQYHC+ +N
Sbjct: 3 RVICSLCDTEQDVFQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGGRDNF 182
Query: 558 FHCSK 572
FHC K
Sbjct: 183 FHCFK 197
Score = 30.4 bits (60), Expect(2) = 2e-029
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2 / +3
Query: 554 FLPLFKSGCCYSIALK 601
F FK GCCYSI LK
Sbjct: 180 FFHCFKCGCCYSIMLK 227
>gb|DR102278.1|DR102278 STRR1_79_G05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_79_G05_A033 5', mRNA sequence
Length = 420
Score = 87.2 bits (184), Expect(3) = 4e-027
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +3 / +3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HYRRRCRI+APCCNEI+DCRHCHNE + +K
Sbjct: 162 DRLNTGNMDHGCAHYRRRCRIQAPCCNEIYDCRHCHNEAMSHLK 293
Score = 46.0 bits (94), Expect(3) = 4e-027
Identities = 15/26 (57%), Positives = 23/26 (88%)
Frame = +3 / +3
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQE 413
D + RHELPR++V++V+CSLC T+Q+
Sbjct: 294 DPLLRHELPRYKVERVICSLCDTDQK 371
Score = 25.8 bits (50), Expect(3) = 4e-027
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3 / +1
Query: 408 QEVRQVCINCGVCMGKYF 461
+ V+QVC N GV G+YF
Sbjct: 367 KNVKQVCEN*GVKKGEYF 420
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 333,466,419
Number of Sequences: 355925
Number of extensions: 5351541
Number of successful extensions: 58806
Number of sequences better than 1.0e-020: 72
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8086761930
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)