TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191640.2.1
(923 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus add... 130 2e-044
gb|DR096226.1|DR096226 STRR1_26_D02.g1_A033 Stem Response R... 124 6e-042
gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C fo... 120 2e-041
gb|DR068962.1|DR068962 RTDK1_3_H10.g1_A029 Roots, dark Pinu... 119 4e-041
gb|CO197457.1|CO197457 GEO1_6_C03.g1_A029 Root gravitropism... 117 9e-040
gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control P... 132 5e-037
gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus pota... 126 3e-035
gb|DR072028.1|DR072028 RTDK1_23_D06.g1_A029 Roots, dark Pin... 124 2e-033
gb|DR050690.1|DR050690 RTBOR1_25_C10.b1_A029 Roots plus add... 93 3e-033
gb|DR057194.1|DR057194 RTNIT1_4_E07.b1_A029 Roots minus nit... 121 3e-033
gb|CO196845.1|CO196845 GEO1_2_A06.b1_A029 Root gravitropism... 122 4e-033
gb|BI397545.1|BI397545 NXPV_100_F08_F NXPV (Nsf Xylem Plani... 124 7e-032
gb|BQ695692.1|BQ695692 NXPV_031_E12_F NXPV (Nsf Xylem Plani... 124 7e-029
gb|BX253476.1|BX253476 BX253476 Pinus pinaster differenciat... 127 1e-028
gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response R... 126 2e-028
gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response R... 126 2e-028
gb|BG673824.1|BG673824 NXPV_075_E12_F NXPV (Nsf Xylem Plani... 124 1e-027
gb|BQ695682.1|BQ695682 NXPV_031_D11_F NXPV (Nsf Xylem Plani... 124 1e-027
gb|DR022672.1|DR022672 STRS1_52_E06.g1_A034 Shoot tip pitch... 123 2e-027
gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control ... 119 2e-026
gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Re... 119 2e-026
gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response R... 119 2e-026
gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo li... 119 2e-026
gb|BQ695778.1|BQ695778 NXPV_032_E11_F NXPV (Nsf Xylem Plani... 118 6e-026
gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Plani... 116 2e-025
gb|DR057265.1|DR057265 RTNIT1_4_E07.g1_A029 Roots minus nit... 116 3e-025
gb|BX250521.1|BX250521 BX250521 Pinus pinaster differenciat... 112 3e-024
gb|CO370165.1|CO370165 RTK1_65_H06.g1_A029 Roots minus pota... 62 4e-024
gb|BI076998.1|BI076998 NXPV_085_G09_F NXPV (Nsf Xylem Plani... 107 9e-023
gb|CO168808.1|CO168808 NDL1_2_D11.g1_A029 Needles control P... 104 1e-021
gb|DR090030.1|DR090030 RTAL1_12_G03.b1_A029 Roots plus adde... 55 2e-021
gb|DR119823.1|DR119823 RTMG1_25_F06.g2_A029 Roots minus mag... 55 2e-021
>gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 5', mRNA sequence
Length = 883
Score = 130 bits (279), Expect(3) = 2e-044
Identities = 57/126 (45%), Positives = 75/126 (59%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + + +S H+ I S + V+++ I AP D NTDG+HV S +V I N TI
Sbjct: 233 SNVHLRDLTFQDSPKIHVEIAQSTYVQVENLQIVAPGDSPNTDGIHVYASQHVVIQNCTI 412
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDCVSI GS + +N + CGPG GIS+G LG E VSDV V L T NGV
Sbjct: 413 ATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGNSEDTVSDVIVNGASLTATQNGV 592
Query: 367 RIKSYE 384
RIK+++
Sbjct: 593 RIKTWQ 610
Score = 44.6 bits (91), Expect(3) = 2e-044
Identities = 17/46 (36%), Positives = 33/46 (71%)
Frame = +1 / +2
Query: 508 SNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
++SS V + +VT+ +I+GTS+T EA+ L CS + PC+ + + +++
Sbjct: 746 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 883
Score = 42.8 bits (87), Expect(3) = 2e-044
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1 / +2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++RM VANPIIIDQY+C
Sbjct: 626 AQGIIFQHVRMTNVANPIIIDQYYC 700
>gb|DR096226.1|DR096226 STRR1_26_D02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_26_D02_A033 5', mRNA sequence
Length = 802
Score = 124 bits (265), Expect(3) = 6e-042
Identities = 54/126 (42%), Positives = 74/126 (58%)
Frame = +1 / +3
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S HI I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 15 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 194
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDC+SI S + ++ + CGPG GIS+G LG VSDV V L T NGV
Sbjct: 195 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 374
Query: 367 RIKSYE 384
RIK+++
Sbjct: 375 RIKTWQ 392
Score = 46.4 bits (95), Expect(3) = 6e-042
Identities = 18/56 (32%), Positives = 36/56 (64%)
Frame = +1 / +3
Query: 478 CPQKVCPGKRSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
C ++ ++SS V + +VT+ +I+GTS+T EA+ L CS + PC+ + + +++
Sbjct: 498 CKKQQMKPCNNHSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 665
Score = 39.1 bits (79), Expect(3) = 6e-042
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1 / +3
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++ M V+NPIIIDQY+C
Sbjct: 408 AQRIMFQHVNMINVSNPIIIDQYYC 482
>gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_E08_A029 5', mRNA sequence
Length = 881
Score = 120 bits (257), Expect(3) = 2e-041
Identities = 51/96 (53%), Positives = 61/96 (63%)
Frame = +1 / -2
Query: 97 VNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGIS 276
+ I AP D NTDG+HV S +V I N TI TGDDCVSI GS + +N + CGPG GIS
Sbjct: 880 LQIVAPGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGIS 701
Query: 277 VGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
+G LG E VSDV V L T NGVRIK+++
Sbjct: 700 IGSLGSGNSEDTVSDVIVNGASLTATQNGVRIKTWQ 593
Score = 44.6 bits (91), Expect(3) = 2e-041
Identities = 17/46 (36%), Positives = 33/46 (71%)
Frame = +1 / -2
Query: 508 SNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
++SS V + +VT+ +I+GTS+T EA+ L CS + PC+ + + +++
Sbjct: 457 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 320
Score = 42.8 bits (87), Expect(3) = 2e-041
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1 / -2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++RM VANPIIIDQY+C
Sbjct: 577 AQGIIFQHVRMTNVANPIIIDQYYC 503
>gb|DR068962.1|DR068962 RTDK1_3_H10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_3_H10_A029 5', mRNA sequence
Length = 794
Score = 119 bits (255), Expect(3) = 4e-041
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +1 / +1
Query: 91 KDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQG 270
+++ I A D NTDG+HV S +V I N TI TGDDCVSI GS G+ +N + CGPG G
Sbjct: 1 ENLQIVALGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSGIQINKLVCGPGHG 180
Query: 271 ISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
IS+G LG E VSDV V L T NGVRIK+++
Sbjct: 181 ISIGSLGSGDSEDTVSDVIVNGASLTATQNGVRIKTWQ 294
Score = 44.6 bits (91), Expect(3) = 4e-041
Identities = 17/46 (36%), Positives = 33/46 (71%)
Frame = +1 / +1
Query: 508 SNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
++SS V + +VT+ +I+GTS+T EA+ L CS + PC+ + + +++
Sbjct: 430 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKILMEGISL 567
Score = 42.8 bits (87), Expect(3) = 4e-041
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1 / +1
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++RM VANPIIIDQY+C
Sbjct: 310 AQGIIFQHVRMTNVANPIIIDQYYC 384
>gb|CO197457.1|CO197457 GEO1_6_C03.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_6_C03_A029 5', mRNA sequence
Length = 580
Score = 117 bits (251), Expect(3) = 9e-040
Identities = 50/109 (45%), Positives = 66/109 (60%)
Frame = +1 / +3
Query: 58 INIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGVM 237
I I S + V+++ I AP D NTDG+H+ S +V I N TI TGDDC+SI S +
Sbjct: 3 IEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDIE 182
Query: 238 VNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
++ + CGPG GIS+G LG VSDV V L T NGVRIK+++
Sbjct: 183 ISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 329
Score = 45.5 bits (93), Expect(3) = 9e-040
Identities = 18/47 (38%), Positives = 31/47 (65%)
Frame = +1 / +3
Query: 478 CPQKVCPGKRSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCS 618
C ++ ++SS V + +VT+ +I+GTS+T EA+ L CS + PC+
Sbjct: 435 CKKQQMKPCNNHSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCT 575
Score = 39.1 bits (79), Expect(3) = 9e-040
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1 / +3
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++ M V+NPIIIDQY+C
Sbjct: 345 AQRIMFQHVNMINVSNPIIIDQYYC 419
>gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_D01_A029 5', mRNA sequence
Length = 441
Score = 132 bits (283), Expect(2) = 5e-037
Identities = 56/110 (50%), Positives = 70/110 (63%)
Frame = +1 / +3
Query: 55 HINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGV 234
H+ I S + V+++ I AP D NTDG+HV S +V I N TI TGDDCVSI GS G+
Sbjct: 3 HVEIAQSTYVQVENLQIVAPGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSGI 182
Query: 235 MVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
+N + CGPG GIS+G LG E VSDV V L T NGVRIK+++
Sbjct: 183 QINKLVCGPGHGISIGSLGSGDSEDTVSDVIVNGASLTATQNGVRIKTWQ 332
Score = 42.8 bits (87), Expect(2) = 5e-037
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1 / +3
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++RM VANPIIIDQY+C
Sbjct: 348 AQGIIFQHVRMTNVANPIIIDQYYC 422
>gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 3', mRNA sequence
Length = 723
Score = 126 bits (270), Expect(2) = 3e-035
Identities = 56/126 (44%), Positives = 75/126 (59%)
Frame = +1 / -2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + + +S H+ I S + V+++ I AP D NTDG+HV S +V I N TI
Sbjct: 524 SNVHLRDLTFQDSPKIHVEIAQSTYVEVENLQIVAPGDSPNTDGIHVYASQHVVIQNCTI 345
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDCVSI GS + +N + CGPG GIS+G LG E VS+V V L T NGV
Sbjct: 344 ATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGDLEDTVSEVIVNGASLTATQNGV 165
Query: 367 RIKSYE 384
RIK+++
Sbjct: 164 RIKTWQ 147
Score = 42.8 bits (87), Expect(2) = 3e-035
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1 / -2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++RM VANPIIIDQY+C
Sbjct: 131 AQGIIFQHVRMTNVANPIIIDQYYC 57
>gb|DR072028.1|DR072028 RTDK1_23_D06.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_D06_A029 5', mRNA sequence
Length = 671
Score = 124 bits (265), Expect(2) = 2e-033
Identities = 54/126 (42%), Positives = 74/126 (58%)
Frame = +1 / +3
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S HI I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 198 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 377
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDC+SI S + ++ + CGPG GIS+G LG VSDV V L T NGV
Sbjct: 378 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 557
Query: 367 RIKSYE 384
RIK+++
Sbjct: 558 RIKTWQ 575
Score = 39.1 bits (79), Expect(2) = 2e-033
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1 / +3
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++ M V+NPIIIDQY+C
Sbjct: 591 AQRIMFQHVNMINVSNPIIIDQYYC 665
>gb|DR050690.1|DR050690 RTBOR1_25_C10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 3', mRNA sequence
Length = 835
Score = 93.2 bits (197), Expect(3) = 3e-033
Identities = 39/72 (54%), Positives = 46/72 (63%)
Frame = +1 / +2
Query: 169 ITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLR 348
I N TI TGDDCVSI GS + +N + CGPG GIS+G LG E VSDV V L
Sbjct: 5 IQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGNSEDTVSDVIVNGASLT 184
Query: 349 NTTNGVRIKSYE 384
T NGVRIK+++
Sbjct: 185 ATQNGVRIKTWQ 220
Score = 44.6 bits (91), Expect(3) = 3e-033
Identities = 17/46 (36%), Positives = 33/46 (71%)
Frame = +1 / +2
Query: 508 SNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
++SS V + +VT+ +I+GTS+T EA+ L CS + PC+ + + +++
Sbjct: 356 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 493
Score = 42.8 bits (87), Expect(3) = 3e-033
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1 / +2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++RM VANPIIIDQY+C
Sbjct: 236 AQGIIFQHVRMTNVANPIIIDQYYC 310
>gb|DR057194.1|DR057194 RTNIT1_4_E07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_E07_A029 3', mRNA sequence
Length = 504
Score = 121 bits (259), Expect(2) = 3e-033
Identities = 51/110 (46%), Positives = 67/110 (60%)
Frame = +1 / -2
Query: 55 HINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGV 234
HI I S + V+++ I AP D NTDG+H+ S +V I N TI TGDDC+SI S +
Sbjct: 497 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 318
Query: 235 MVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
++ + CGPG GIS+G LG VSDV V L T NGVRIK+++
Sbjct: 317 EISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 168
Score = 40.9 bits (83), Expect(2) = 3e-033
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +1 / -2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++ M +V+NPIIIDQYFC
Sbjct: 152 AQRIMFQHVNMIKVSNPIIIDQYFC 78
>gb|CO196845.1|CO196845 GEO1_2_A06.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_2_A06_A029 3', mRNA sequence
Length = 691
Score = 122 bits (262), Expect(2) = 4e-033
Identities = 53/126 (42%), Positives = 74/126 (58%)
Frame = +1 / -2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S HI I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 552 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 373
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDC+SI S + ++ + CGPG GIS+G LG VSDV V L T NGV
Sbjct: 372 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 193
Query: 367 RIKSYE 384
RI++++
Sbjct: 192 RIRTWQ 175
Score = 39.1 bits (79), Expect(2) = 4e-033
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1 / -2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++ M V+NPIIIDQY+C
Sbjct: 159 AQRIMFQHVNMINVSNPIIIDQYYC 85
>gb|BI397545.1|BI397545 NXPV_100_F08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_100_F08 5' similar to Arabidopsis
thaliana sequence At1g80170 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 124 bits (265), Expect(2) = 7e-032
Identities = 54/126 (42%), Positives = 74/126 (58%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S HI I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDC+SI S + ++ + CGPG GIS+G LG VSDV V L T NGV
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 367 RIKSYE 384
RIK+++
Sbjct: 362 RIKTWQ 379
Score = 33.6 bits (67), Expect(2) = 7e-032
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1 / +2
Query: 406 ASHLTFENIRMEEVANPIIIDQY 474
A + F+++ M V+NPIIIDQY
Sbjct: 395 AQRIMFQHVNMINVSNPIIIDQY 463
>gb|BQ695692.1|BQ695692 NXPV_031_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_E12 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 124 bits (265), Expect(2) = 7e-029
Identities = 54/126 (42%), Positives = 74/126 (58%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S HI I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDC+SI S + ++ + CGPG GIS+G LG VSDV V L T NGV
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 367 RIKSYE 384
RIK+++
Sbjct: 362 RIKTWQ 379
Score = 23.5 bits (45), Expect(2) = 7e-029
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1 / +2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + +++ M +NPIII +C
Sbjct: 395 AQRIMXQHVNMIXXSNPIIIXXIYC 469
>gb|BX253476.1|BX253476 BX253476 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083H12 similar to POLYGALACTURONASE
PRECURSOR, mRNA sequence
Length = 596
Score = 127 bits (272), Expect = 1e-028
Identities = 53/126 (42%), Positives = 76/126 (60%)
Frame = +1 / +1
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S H+ I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 160 SNVHLRDLKFRDSPKIHVEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 339
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDC+SI S + ++ + CGPG GIS+G LG+ E VSDV V L T NG+
Sbjct: 340 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGKADSEDTVSDVFVNGASLNGTQNGL 519
Query: 367 RIKSYE 384
RIK+++
Sbjct: 520 RIKTWQ 537
>gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_E02_A033 3', mRNA sequence
Length = 768
Score = 126 bits (270), Expect = 2e-028
Identities = 52/112 (46%), Positives = 71/112 (63%)
Frame = +1 / +2
Query: 55 HINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGV 234
H+ I+ S + V+++ I AP D NTDG+HV S +V I N TI TGDDCVSIG S +
Sbjct: 32 HVEINQSTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSSI 211
Query: 235 MVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYEDA 390
+N + C PGQGIS+G LG E VSDV V L + NGVR+++++ +
Sbjct: 212 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETWQSS 367
>gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_E02_A033 5', mRNA sequence
Length = 546
Score = 126 bits (270), Expect = 2e-028
Identities = 52/112 (46%), Positives = 71/112 (63%)
Frame = +1 / +2
Query: 55 HINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGV 234
H+ I+ S + V+++ I AP D NTDG+HV S +V I N TI TGDDCVSIG S +
Sbjct: 5 HVEINQSTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSSI 184
Query: 235 MVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYEDA 390
+N + C PGQGIS+G LG E VSDV V L + NGVR+++++ +
Sbjct: 185 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETWQSS 340
>gb|BG673824.1|BG673824 NXPV_075_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_E12 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 471
Score = 124 bits (265), Expect = 1e-027
Identities = 54/126 (42%), Positives = 74/126 (58%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S HI I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDC+SI S + ++ + CGPG GIS+G LG VSDV V L T NGV
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 367 RIKSYE 384
RIK+++
Sbjct: 362 RIKTWQ 379
>gb|BQ695682.1|BQ695682 NXPV_031_D11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_D11 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 124 bits (265), Expect = 1e-027
Identities = 54/126 (42%), Positives = 74/126 (58%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S HI I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDC+SI S + ++ + CGPG GIS+G LG VSDV V L T NGV
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 367 RIKSYE 384
RIK+++
Sbjct: 362 RIKTWQ 379
>gb|DR022672.1|DR022672 STRS1_52_E06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_52_E06_A034 5', mRNA sequence
Length = 566
Score = 123 bits (263), Expect = 2e-027
Identities = 51/115 (44%), Positives = 68/115 (59%)
Frame = +1 / +2
Query: 40 NSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGP 219
NS+ HI + + + + AP NTDG+HV S +V I N+ IGTGDDC+SI
Sbjct: 161 NSQQMHIKLRRCVGVVADHLKVLAPGHSPNTDGIHVSASKDVVIKNTIIGTGDDCISIVS 340
Query: 220 GSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
S + NI CGPG GIS+G LG + V+DV V L NTTNG+RIK+++
Sbjct: 341 DSFNICTENIACGPGHGISIGSLGEGSAKAQVADVMVHGAFLENTTNGLRIKTWQ 505
>gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_G01_A029 5', mRNA sequence
Length = 695
Score = 119 bits (255), Expect = 2e-026
Identities = 50/112 (44%), Positives = 69/112 (61%)
Frame = +1 / +1
Query: 55 HINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGV 234
H+ I+ S + V+++ I AP D NTDG+HV S +V I N I TGD CVSIG S +
Sbjct: 331 HVEINESTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCKIATGDYCVSIGTESSSI 510
Query: 235 MVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYEDA 390
+N + C PGQGIS+G LG E VSDV V L + NGVR+++++ +
Sbjct: 511 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETWQSS 666
>gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_G02_A033 3', mRNA sequence
Length = 860
Score = 119 bits (255), Expect = 2e-026
Identities = 51/108 (47%), Positives = 67/108 (62%)
Frame = +1 / +2
Query: 55 HINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGV 234
H+ I+ S + V+++ I AP D NTDG+ V S +V I N TI TGDDCVSIG S +
Sbjct: 56 HVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTI 235
Query: 235 MVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
+N + C PGQGIS+G LG E VSDV V L + NGVR+++
Sbjct: 236 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVQT 379
>gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_D04_A033 5', mRNA sequence
Length = 695
Score = 119 bits (255), Expect = 2e-026
Identities = 51/108 (47%), Positives = 67/108 (62%)
Frame = +1 / +3
Query: 55 HINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGV 234
H+ I+ S + V+++ I AP D NTDG+ V S +V I N TI TGDDCVSIG S +
Sbjct: 96 HVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTI 275
Query: 235 MVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
+N + C PGQGIS+G LG E VSDV V L + NGVR+++
Sbjct: 276 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVQT 419
>gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA992, mRNA sequence
Length = 841
Score = 119 bits (255), Expect = 2e-026
Identities = 51/108 (47%), Positives = 67/108 (62%)
Frame = +1 / -2
Query: 55 HINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGV 234
H+ I+ S + V+++ I AP D NTDG+ V S +V I N TI TGDDCVSIG S +
Sbjct: 696 HVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTI 517
Query: 235 MVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
+N + C PGQGIS+G LG E VSDV V L + NGVR+++
Sbjct: 516 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVQT 373
>gb|BQ695778.1|BQ695778 NXPV_032_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_032_E11 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 423
Score = 118 bits (252), Expect = 6e-026
Identities = 52/124 (41%), Positives = 70/124 (56%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S HI I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDC+SI S + ++ + CGPG GIS+G LG VSDV V T N V
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSXXSNDTVSDVFVNGAXXNGTQNXV 361
Query: 367 RIKS 378
RIK+
Sbjct: 362 RIKT 373
>gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_D07 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 537
Score = 116 bits (249), Expect = 2e-025
Identities = 50/108 (46%), Positives = 66/108 (61%)
Frame = +1 / +3
Query: 55 HINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGV 234
H+ I+ S + V+++ I AP D NTDG+ V S +V I N TI TGDDCVSIG S +
Sbjct: 141 HVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTI 320
Query: 235 MVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
+N + C PGQGIS+G LG E VSDV L + NGVR+++
Sbjct: 321 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIXXGASLTASQNGVRVQT 464
>gb|DR057265.1|DR057265 RTNIT1_4_E07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_E07_A029 5', mRNA sequence
Length = 650
Score = 116 bits (247), Expect = 3e-025
Identities = 49/108 (45%), Positives = 65/108 (60%)
Frame = +1 / +2
Query: 58 INIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGVM 237
+ I S + V+++ I AP D NTDG+H+ S +V I N TI TGDDC+SI S +
Sbjct: 326 LKIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDIE 505
Query: 238 VNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSY 381
++ + CGPG GIS+G LG VSDV V L T NGVRIK++
Sbjct: 506 ISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTW 649
>gb|BX250521.1|BX250521 BX250521 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038A08 similar to POLYGALACTURONASE
PRECURSOR, mRNA sequence
Length = 662
Score = 112 bits (240), Expect = 3e-024
Identities = 48/116 (41%), Positives = 67/116 (57%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S H+ I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 314 SNVHLRDLKFRDSPKIHVEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 493
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNT 354
TGDDC+SI S + ++ + CGPG GIS+G LG+ E VSDV V L T
Sbjct: 494 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGQADSEDTVSDVFVNGASLNGT 661
>gb|CO370165.1|CO370165 RTK1_65_H06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 5', mRNA sequence
Length = 728
Score = 62.0 bits (129), Expect(3) = 4e-024
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = +1 / -1
Query: 220 GSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
GS + +N + CGPG GIS+G LG E VS+V V L T NGVRIK+++
Sbjct: 725 GSSDIQINKLVCGPGHGISMGSLGSGDLEDTVSEVIVNGASLTATQNGVRIKTWQ 561
Score = 44.6 bits (91), Expect(3) = 4e-024
Identities = 17/46 (36%), Positives = 33/46 (71%)
Frame = +1 / -1
Query: 508 SNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
++SS V + +VT+ +I+GTS+T EA+ L CS + PC+ + + +++
Sbjct: 425 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 288
Score = 42.8 bits (87), Expect(3) = 4e-024
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1 / -1
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++RM VANPIIIDQY+C
Sbjct: 545 AQGIIFQHVRMTNVANPIIIDQYYC 471
>gb|BI076998.1|BI076998 NXPV_085_G09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_085_G09 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 373
Score = 107 bits (229), Expect = 9e-023
Identities = 50/124 (40%), Positives = 67/124 (54%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N + +K +S HI I S + V+++ I AP D NTDG+H+ S +V I N TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TGDDC+SI S + ++ + CGPG GIS LG V V V L T N V
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISXXXLGSGDSNDTVXXVFVXGASLNXTQNXV 361
Query: 367 RIKS 378
RIK+
Sbjct: 362 RIKT 373
>gb|CO168808.1|CO168808 NDL1_2_D11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_2_D11_A029 5', mRNA sequence
Length = 728
Score = 104 bits (221), Expect = 1e-021
Identities = 44/84 (52%), Positives = 54/84 (64%)
Frame = +1 / +3
Query: 127 NTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDE 306
NTDG+HV S +V I N TI TGDDCVSIG S + +N + C PGQGIS+G LG E
Sbjct: 294 NTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSE 473
Query: 307 KDVSDVTVRDCVLRNTTNGVRIKS 378
VSDV V L + NGVR+++
Sbjct: 474 DTVSDVIVNGASLTASQNGVRVET 545
>gb|DR090030.1|DR090030 RTAL1_12_G03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_12_G03_A029 3', mRNA sequence
Length = 672
Score = 54.7 bits (113), Expect(3) = 2e-021
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = +1 / -3
Query: 253 CGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
CGPG GIS+G LG VSDV V L T NGVRIK+++
Sbjct: 670 CGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 539
Score = 46.4 bits (95), Expect(3) = 2e-021
Identities = 18/56 (32%), Positives = 36/56 (64%)
Frame = +1 / -3
Query: 478 CPQKVCPGKRSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
C ++ ++SS V + +VT+ +I+GTS+T EA+ L CS + PC+ + + +++
Sbjct: 433 CKKQQMKPCNNDSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 266
Score = 39.1 bits (79), Expect(3) = 2e-021
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1 / -3
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++ M V+NPIIIDQY+C
Sbjct: 523 AQRIMFQHVNMINVSNPIIIDQYYC 449
>gb|DR119823.1|DR119823 RTMG1_25_F06.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_25_F06_A029 5', mRNA sequence
Length = 589
Score = 54.7 bits (113), Expect(3) = 2e-021
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = +1 / +3
Query: 253 CGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
CGPG GIS+G LG VSDV V L T NGVRIK+++
Sbjct: 3 CGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 134
Score = 46.4 bits (95), Expect(3) = 2e-021
Identities = 18/56 (32%), Positives = 36/56 (64%)
Frame = +1 / +3
Query: 478 CPQKVCPGKRSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
C ++ ++SS V + +VT+ +I+GTS+T EA+ L CS + PC+ + + +++
Sbjct: 240 CKKQQMKPCNNDSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 407
Score = 39.1 bits (79), Expect(3) = 2e-021
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1 / +3
Query: 406 ASHLTFENIRMEEVANPIIIDQYFC 480
A + F+++ M V+NPIIIDQY+C
Sbjct: 150 AQRIMFQHVNMINVSNPIIIDQYYC 224
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 351,463,121
Number of Sequences: 355925
Number of extensions: 4245225
Number of successful extensions: 28925
Number of sequences better than 1.0e-020: 39
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 13604676880
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)