TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3147935.2.1
(711 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stresse... 146 1e-034
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 136 1e-031
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 136 1e-031
gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus pota... 134 5e-031
gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus add... 134 5e-031
gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciat... 128 3e-029
gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated wi... 128 4e-029
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 128 4e-029
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 128 4e-029
gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus p... 128 4e-029
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 128 4e-029
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 128 4e-029
gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulf... 125 3e-028
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 122 4e-027
gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch ... 115 4e-025
gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Plani... 114 8e-025
gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch ... 113 2e-024
gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library P... 105 2e-022
gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus ni... 101 4e-021
gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Plani... 101 6e-021
>gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C09_A021 5', mRNA sequence
Length = 797
Score = 146 bits (314), Expect = 1e-034
Identities = 49/97 (50%), Positives = 71/97 (73%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FY T PLD WHVLGLG++ S+ R E+++A+V+H
Sbjct: 687 YHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDKSWHVLGLGYNPSVDRLEIDNAAVVH 508
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G +KPWLE+++ KYR YW +Y+ YD+P LQQCNI+
Sbjct: 507 YNGNMKPWLELAMTKYRPYWTKYIKYDHPFLQQCNIN 397
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 136 bits (292), Expect = 1e-031
Identities = 48/96 (50%), Positives = 65/96 (67%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W L K + WK +LP G + FY+ T LD WHVLGLG++ ++ E+E A+VIH
Sbjct: 164 YHQWQNLNKDRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIH 343
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWL+I+IPKYR YW +Y+ YD CNI
Sbjct: 344 YNGNMKPWLDIAIPKYRHYWTKYVKYDXXXXXLCNI 451
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 136 bits (292), Expect = 1e-031
Identities = 48/96 (50%), Positives = 65/96 (67%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W L K + WK +LP G + FY+ T LD WHVLGLG++ ++ E+E A+VIH
Sbjct: 164 YHQWQNLNKDRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIH 343
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWL+I+IPKYR YW +Y+ YD CNI
Sbjct: 344 YNGNMKPWLDIAIPKYRHYWTKYVKYDXXXXXLCNI 451
>gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C05_A029 5', mRNA sequence
Length = 912
Score = 134 bits (288), Expect = 5e-031
Identities = 44/97 (45%), Positives = 67/97 (69%)
Frame = -3 / -1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W + WK +LP G + FY T PLD RWH+LGLG+D ++ +ES +V+H
Sbjct: 474 YHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQLIESGAVLH 295
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G +KPWL++++ +Y+ +W +Y+NY +P LQ+CNIH
Sbjct: 294 YNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKCNIH 184
>gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C09_A029 5', mRNA sequence
Length = 822
Score = 134 bits (288), Expect = 5e-031
Identities = 44/97 (45%), Positives = 67/97 (69%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W + WK +LP G + FY T PLD RWH+LGLG+D ++ +ES +V+H
Sbjct: 784 YHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQLIESGAVLH 605
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G +KPWL++++ +Y+ +W +Y+NY +P LQ+CNIH
Sbjct: 604 YNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKCNIH 494
>gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E08, mRNA sequence
Length = 629
Score = 128 bits (275), Expect = 3e-029
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = -3 / -1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + +Y T PLD WHVLGLG++ SI DE+ +A+V+H
Sbjct: 629 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 450
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + +YR W +Y++YD +Q CN
Sbjct: 449 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCN 345
>gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 3', mRNA sequence
Length = 702
Score = 128 bits (274), Expect = 4e-029
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + +Y T PLD WHVLGLG++ SI DE+ +A+V+H
Sbjct: 131 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 310
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + +YR W +Y++YD +Q CN
Sbjct: 311 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCN 415
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 128 bits (274), Expect = 4e-029
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + +Y T PLD WHVLGLG++ SI DE+ +A+V+H
Sbjct: 209 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 388
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + +YR W +Y++YD +Q CN
Sbjct: 389 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCN 493
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 128 bits (274), Expect = 4e-029
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = -3 / +3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + +Y T PLD WHVLGLG++ SI DE+ +A+V+H
Sbjct: 345 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 524
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + +YR W +Y++YD +Q CN
Sbjct: 525 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCN 629
>gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_A06_A029 3', mRNA sequence
Length = 710
Score = 128 bits (274), Expect = 4e-029
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = -3 / +3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + +Y T PLD WHVLGLG++ SI DE+ +A+V+H
Sbjct: 156 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 335
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + +YR W +Y++YD +Q CN
Sbjct: 336 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCN 440
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 128 bits (274), Expect = 4e-029
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + +Y T PLD WHVLGLG++ SI DE+ +A+V+H
Sbjct: 329 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 508
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + +YR W +Y++YD +Q CN
Sbjct: 509 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCN 613
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 128 bits (274), Expect = 4e-029
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + +Y T PLD WHVLGLG++ SI DE+ +A+V+H
Sbjct: 337 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 516
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I + +YR W +Y++YD +Q CN
Sbjct: 517 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCN 621
>gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_29_B07_A029 3', mRNA sequence
Length = 688
Score = 125 bits (268), Expect = 3e-028
Identities = 44/94 (46%), Positives = 62/94 (65%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W + WK +LP G + FY T PLD RWHVLGLG+D +I +ES +VIH
Sbjct: 353 YHYWQEQNVDRTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGYDLNIDEQLIESGAVIH 532
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQC 404
++G +KPWL++++ +Y+ W Y+NY +P LQQC
Sbjct: 533 FNGNMKPWLKLAMKRYKAIWEMYVNYSHPLLQQC 634
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 122 bits (260), Expect = 4e-027
Identities = 40/84 (47%), Positives = 60/84 (71%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FY T PLD WHVLGLG++ S+ R E+++A+V+H
Sbjct: 611 YHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDKSWHVLGLGYNPSVDRLEIDNAAVVH 790
Query: 505 YSGKLKPWLEISIPKYRGYWNRYL 434
Y+G +KPWLE+++ KYR YW +Y+
Sbjct: 791 YNGNMKPWLELAMTKYRPYWTKYI 862
>gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 5', mRNA sequence
Length = 716
Score = 115 bits (245), Expect = 4e-025
Identities = 39/82 (47%), Positives = 57/82 (69%)
Frame = -3 / +1
Query: 646 WKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISI 467
WK +LP G + FY T PLD WHV GLG++ SI DE+ +A+V+H++G +KPWL+I +
Sbjct: 10 WKLGTLPPGLITFYKTTKPLDKSWHVFGLGYNPSISMDEIRNAAVVHFNGFMKPWLDIGM 189
Query: 466 PKYRGYWNRYLNYDNPHLQQCN 401
+YR W +Y++YD +Q CN
Sbjct: 190 NQYRDTWTKYVDYDMEFVQMCN 255
>gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_093_C03 5' similar to Arabidopsis
thaliana sequence At3g25140 glycosyl transferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 326
Score = 114 bits (243), Expect = 8e-025
Identities = 39/87 (44%), Positives = 55/87 (63%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + +Y T PLD WHVLGLG++ SI DE+ +A V H
Sbjct: 61 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAXVXH 240
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYD 425
++G +KPWL+ + +YR W +Y YD
Sbjct: 241 FNGNMKPWLDXXMNQYRDTWTKYXXYD 321
>gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 3', mRNA sequence
Length = 690
Score = 113 bits (241), Expect = 2e-024
Identities = 37/82 (45%), Positives = 57/82 (69%)
Frame = -3 / +1
Query: 646 WKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISI 467
WK +LP G + +Y T PLD WHVLG G++ SI DE+ +A+V+H++G +KPWL+I +
Sbjct: 1 WKLGTLPPGLITYYKTTKPLDKSWHVLGFGYNPSISMDEIRNAAVVHFNGNMKPWLDIGM 180
Query: 466 PKYRGYWNRYLNYDNPHLQQCN 401
+YR W +Y+++D +Q CN
Sbjct: 181 NQYRDTWTKYVDFDMEFVQMCN 246
>gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 522
Score = 105 bits (225), Expect = 2e-022
Identities = 37/85 (43%), Positives = 55/85 (64%)
Frame = -3 / +3
Query: 646 WKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISI 467
W+ +LP + FYN T L+ W +GLGHD I + ++E + V+HY+G LKPWLEI I
Sbjct: 216 WRFGTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKPWLEIGI 395
Query: 466 PKYRGYWNRYLNYDNPHLQQCNIHG 392
KY+ YW +YL + + +CN++G
Sbjct: 396 NKYKPYWAKYLKQEGQFMLECNVNG 470
>gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_E10_A029 3', mRNA sequence
Length = 793
Score = 101 bits (216), Expect = 4e-021
Identities = 34/69 (49%), Positives = 50/69 (72%)
Frame = -3 / +3
Query: 607 YNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISIPKYRGYWNRYLNY 428
Y T PLD WHVLGLG++ SI DE+ +A+V+H++G +KPWL+I + +YR W +Y++Y
Sbjct: 3 YKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDY 182
Query: 427 DNPHLQQCN 401
D +Q CN
Sbjct: 183 DMEFVQMCN 209
>gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_019_E12 5' similar to Arabidopsis
thaliana sequence At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 365
Score = 101 bits (215), Expect = 6e-021
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = -3 / +1
Query: 634 SLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISIPKYR 455
+LP + FYN T L+ W +GLGHD I + ++E + V+HY+G LKPWLEI I KY+
Sbjct: 7 TLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKPWLEIGINKYK 186
Query: 454 GYWNRYLNYDNPHLQQCNIHG 392
YW +YL + + +CN++G
Sbjct: 187 PYWAKYLKQEGQFMLECNVNG 249
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 321,276,005
Number of Sequences: 355925
Number of extensions: 3903457
Number of successful extensions: 29087
Number of sequences better than 1.0e-020: 24
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9920846680
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)