TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.3
(672 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus... 201 3e-051
gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control P... 200 6e-051
gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism... 200 6e-051
gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism... 200 6e-051
gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus pota... 200 6e-051
gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciat... 200 9e-051
gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciat... 199 2e-050
gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciat... 199 2e-050
gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus cal... 198 3e-050
gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine ro... 197 6e-050
gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine ro... 197 6e-050
gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus... 194 5e-049
gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side ... 192 2e-048
gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pi... 190 7e-048
gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pi... 185 2e-046
gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated wi... 185 2e-046
gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated wi... 185 2e-046
gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated w... 185 2e-046
gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated w... 185 2e-046
gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calc... 185 2e-046
gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus mag... 185 2e-046
gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Ve... 184 6e-046
gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Ver... 184 6e-046
gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calc... 184 6e-046
gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch... 183 8e-046
gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control P... 182 2e-045
gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciat... 181 4e-045
gb|AI812692.1|AI812692 17H9 Pine Lambda Zap Xylem library P... 176 1e-043
gb|CO200683.1|CO200683 GEO2_8_H04.g1_A032 Root gravitropism... 175 2e-043
gb|BQ198615.1|BQ198615 NXLV133_F09_F NXLV (Nsf Xylem Late w... 173 9e-043
gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus... 161 1e-041
gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus m... 161 1e-041
gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus ... 161 1e-041
gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism... 161 1e-041
gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus... 161 6e-041
gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control P... 155 6e-040
gb|CO158324.1|CO158324 FLD1_6_E04.b1_A029 Root flooded Pinu... 151 3e-039
gb|BX784299.1|BX784299 BX784299 Pinus pinaster differenciat... 160 1e-038
gb|DR079744.1|DR079744 RTFEPL1_17_G07.b1_A029 Roots plus ad... 152 2e-036
gb|DR054782.1|DR054782 RTCA1_19_C02.g1_A029 Roots minus cal... 152 3e-036
gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pi... 151 4e-036
gb|CO160828.1|CO160828 FLD1_24_F07.g1_A029 Root flooded Pin... 149 1e-035
gb|CO196970.1|CO196970 GEO1_3_A11.b1_A029 Root gravitropism... 145 3e-034
gb|CO196976.1|CO196976 GEO1_3_B11.b1_A029 Root gravitropism... 145 3e-034
gb|DR011228.1|DR011228 HEAT1_4_H03.b1_A029 Root at 37 C for... 145 3e-034
gb|BQ696747.1|BQ696747 NXPV_044_G07_F NXPV (Nsf Xylem Plani... 141 4e-033
gb|BQ697562.1|BQ697562 NXPV_058_A01_F NXPV (Nsf Xylem Plani... 138 3e-032
gb|BG318141.1|BG318141 NXPV_010_H11_F NXPV (Nsf Xylem Plani... 135 3e-031
gb|BM428215.1|BM428215 NXRV_013_H12_F NXRV (Nsf Xylem Root ... 133 2e-030
gb|DR019423.1|DR019423 STRS1_29_H11.g1_A034 Shoot tip pitch... 129 2e-029
gb|DR120720.1|DR120720 RTMG1_31_B05.g1_A029 Roots minus mag... 129 2e-029
gb|AW698004.1|AW698004 NXNV_079_D10_F Nsf Xylem Normal wood... 127 5e-029
gb|DR091892.1|DR091892 RTAL1_24_D12.g1_A029 Roots plus adde... 125 3e-028
gb|CX715391.1|CX715391 RTPQ1_33_G10.g1_A032 Roots treated w... 122 3e-027
gb|DR120585.1|DR120585 RTMG1_30_E02.g1_A029 Roots minus mag... 122 3e-027
gb|CO201574.1|CO201574 RTCNT2_6_E06.g1_A029 Root control 2 ... 116 2e-025
gb|DT637149.1|DT637149 EST1152080 Normalized pine embryo li... 116 2e-025
gb|CF663138.1|CF663138 RTCNT1_1_B03.b1_A029 Root control Pi... 114 5e-025
gb|AL750713.1|AL750713 AL750713 RN Pinus pinaster cDNA clon... 113 1e-024
gb|DR692108.1|DR692108 EST1082195 Normalized pine embryo li... 111 4e-024
gb|BF609099.1|BF609099 NXSI_040_D04_F NXSI (Nsf Xylem Side ... 109 2e-023
gb|BE241178.1|BE241178 NXNV_173_G07_F Nsf Xylem Normal wood... 108 3e-023
gb|BM903440.1|BM903440 NXRV_041_F05_F NXRV (Nsf Xylem Root ... 104 4e-023
gb|BM367221.1|BM367221 NXLV_046_C05_F NXLV (Nsf Xylem Late ... 103 1e-021
gb|BM493349.1|BM493349 NXLV_061_G09_F NXLV (Nsf Xylem Late ... 102 2e-021
gb|CO158404.1|CO158404 FLD1_6_E04.g1_A029 Root flooded Pinu... 102 2e-021
gb|CX650224.1|CX650224 COLD1_44_F10.b1_A029 Root cold Pinus... 101 4e-021
gb|DR011296.1|DR011296 HEAT1_4_H03.g1_A029 Root at 37 C for... 101 4e-021
gb|BM493829.1|BM493829 NXLV_070_A11_F NXLV (Nsf Xylem Late ... 101 5e-021
gb|DT631597.1|DT631597 EST1146528 Normalized pine embryo li... 79 1e-020
>gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_C05_A029 3', mRNA sequence
Length = 733
Score = 201 bits (434), Expect = 3e-051
Identities = 77/129 (59%), Positives = 96/129 (74%)
Frame = +2 / +1
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK YNL D VSR T Q
Sbjct: 22 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKNYNLFDAVSRCTTQ 201
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP SWTAI+LTFDNAG+W++ S WER++LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 202 VYPNSWTAILLTFDNAGLWNLRSQTWERHFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 381
Query: 407 KVVGLPLPP 433
K G P P
Sbjct: 382 KATGRPRLP 408
Score = 104 bits (222), Expect = 6e-022
Identities = 55/113 (48%), Positives = 68/113 (60%)
Frame = -1 / -3
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D G+ TL C PR RS + + H PALS V +AVH+ GYT
Sbjct: 380 PQRRAL*GISYSSLNDFTGDFTLTYVCWPRKCRSHVCDLRFHSPALSKVKRMAVHEFGYT 201
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMK 67
+V R T S RL FL +G P PT KKA PS ++ ++FS F TIS K
Sbjct: 200 *VVQRETASKRL*FFLFAGVQSPPSNPTTKKAYPSKCQDWIVFS*FWNTISTK 42
>gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_B12_A029 3', mRNA sequence
Length = 739
Score = 200 bits (432), Expect = 6e-051
Identities = 77/129 (59%), Positives = 96/129 (74%)
Frame = +2 / +3
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK+YNL D VSR T Q
Sbjct: 192 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 371
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP SWTAI+LTFDNAG+W++ S WER +LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 372 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 551
Query: 407 KVVGLPLPP 433
K G P P
Sbjct: 552 KATGRPRLP 578
Score = 105 bits (225), Expect = 2e-022
Identities = 55/113 (48%), Positives = 69/113 (61%)
Frame = -1 / -1
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D G+ TL C PR RS + + H PALS V +AVH+ GYT
Sbjct: 550 PQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKRMAVHEFGYT 371
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMK 67
+V R T S RL +FL +G P PT KKA PS ++ ++FS F TIS K
Sbjct: 370 *VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTISTK 212
>gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 3', mRNA sequence
Length = 805
Score = 200 bits (432), Expect = 6e-051
Identities = 77/129 (59%), Positives = 96/129 (74%)
Frame = +2 / +3
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK+YNL D VSR T Q
Sbjct: 255 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 434
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP SWTAI+LTFDNAG+W++ S WER +LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 435 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 614
Query: 407 KVVGLPLPP 433
K G P P
Sbjct: 615 KATGRPRLP 641
Score = 105 bits (225), Expect = 2e-022
Identities = 55/113 (48%), Positives = 69/113 (61%)
Frame = -1 / -1
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D G+ TL C PR RS + + H PALS V +AVH+ GYT
Sbjct: 613 PQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKRMAVHEFGYT 434
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMK 67
+V R T S RL +FL +G P PT KKA PS ++ ++FS F TIS K
Sbjct: 433 *VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTISTK 275
>gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 5', mRNA sequence
Length = 883
Score = 200 bits (432), Expect = 6e-051
Identities = 77/129 (59%), Positives = 96/129 (74%)
Frame = +2 / +3
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK+YNL D VSR T Q
Sbjct: 315 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 494
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP SWTAI+LTFDNAG+W++ S WER +LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 495 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 674
Query: 407 KVVGLPLPP 433
K G P P
Sbjct: 675 KATGRPRLP 701
Score = 105 bits (225), Expect = 2e-022
Identities = 55/113 (48%), Positives = 69/113 (61%)
Frame = -1 / -1
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D G+ TL C PR RS + + H PALS V +AVH+ GYT
Sbjct: 673 PQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKRMAVHEFGYT 494
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMK 67
+V R T S RL +FL +G P PT KKA PS ++ ++FS F TIS K
Sbjct: 493 *VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTISTK 335
>gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_A07_A029 3', mRNA sequence
Length = 875
Score = 200 bits (432), Expect = 6e-051
Identities = 77/129 (59%), Positives = 96/129 (74%)
Frame = +2 / +3
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK+YNL D VSR T Q
Sbjct: 234 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 413
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP SWTAI+LTFDNAG+W++ S WER +LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 414 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 593
Query: 407 KVVGLPLPP 433
K G P P
Sbjct: 594 KATGRPRLP 620
Score = 105 bits (225), Expect = 2e-022
Identities = 55/113 (48%), Positives = 69/113 (61%)
Frame = -1 / -2
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D G+ TL C PR RS + + H PALS V +AVH+ GYT
Sbjct: 592 PQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKRMAVHEFGYT 413
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMK 67
+V R T S RL +FL +G P PT KKA PS ++ ++FS F TIS K
Sbjct: 412 *VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTISTK 254
>gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP061D03, mRNA sequence
Length = 707
Score = 200 bits (431), Expect = 9e-051
Identities = 78/129 (60%), Positives = 95/129 (73%)
Frame = +2 / +3
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
+ E+R FIEIVF+N E +I S H+DGY+FF VGM G W+P RK+YNL D VSR T Q
Sbjct: 30 LNVEYRAFIEIVFQNYENTIQSWHLDGYSFFVVGMDGGDWTPANRKSYNLFDAVSRCTTQ 209
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP SWTAI LTFDNAG+W++ S WER +LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 210 VYPNSWTAIFLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 389
Query: 407 KVVGLPLPP 433
K G P P
Sbjct: 390 KATGRPRLP 416
Score = 109 bits (232), Expect = 2e-023
Identities = 56/113 (49%), Positives = 70/113 (61%)
Frame = -1 / -2
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D G+ TL C PR RS + + H PALS V +AVH+ GYT
Sbjct: 388 PQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKKMAVHEFGYT 209
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMK 67
+V R T S RL +FL +G P IPT KK PS ++ ++FS F TISMK
Sbjct: 208 *VVQRETASKRL*LFLFAGVQSPPSIPTTKKEYPSKCQDWIVFS*FWNTISMK 50
>gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP077H07 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 681
Score = 199 bits (428), Expect = 2e-050
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +2 / +3
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK YNL D VSR T Q
Sbjct: 165 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 344
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP+SWTA++LTFDNAGMW++ S IW R YLG+Q YI V + RS RDEY++P NAL CG
Sbjct: 345 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCG 524
Query: 407 KVVGLPLPP 433
K G P P
Sbjct: 525 KARGRPRLP 551
Score = 119 bits (254), Expect = 2e-026
Identities = 60/117 (51%), Positives = 72/117 (61%)
Frame = -1 / -3
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D TLM C PR +R+ + + H+PALS V AVHD GYT
Sbjct: 523 PQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYT 344
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 55
W+V R T S RL FL +G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 343 WVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 173
>gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085B04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 613
Score = 199 bits (428), Expect = 2e-050
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK YNL D VSR T Q
Sbjct: 50 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 229
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP+SWTA++LTFDNAGMW++ S IW R YLG+Q YI V + RS RDEY++P NAL CG
Sbjct: 230 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCG 409
Query: 407 KVVGLPLPP 433
K G P P
Sbjct: 410 KARGRPRLP 436
Score = 119 bits (254), Expect = 2e-026
Identities = 60/117 (51%), Positives = 72/117 (61%)
Frame = -1 / -2
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D TLM C PR +R+ + + H+PALS V AVHD GYT
Sbjct: 408 PQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYT 229
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 55
W+V R T S RL FL +G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 228 WVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 58
>gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 3', mRNA sequence
Length = 751
Score = 198 bits (427), Expect = 3e-050
Identities = 78/130 (60%), Positives = 95/130 (73%)
Frame = +2 / +2
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V+ E+R F+EIVF+N E +I S H+DGY+FF VGM G W+P R YNL D VSR T
Sbjct: 230 VLNVEYRNFVEIVFQNNENTIQSWHLDGYSFFVVGMENGTWTPASRNGYNLFDAVSRCTT 409
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRC 403
QVYP+SWTAI+LTFDNAGMW++ S W R +LG+Q Y+ V SP RSLRDE+N+P NAL C
Sbjct: 410 QVYPQSWTAILLTFDNAGMWNLRSETWPRQFLGQQTYVRVRSPVRSLRDEFNIPHNALLC 589
Query: 404 GKVVGLPLPP 433
GK G P P
Sbjct: 590 GKARGRPRLP 619
Score = 133 bits (286), Expect = 9e-031
Identities = 65/121 (53%), Positives = 76/121 (62%)
Frame = -1 / -2
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+L SS SDR G+ TL C PR +R + + H+PALS V IAVHD GYT
Sbjct: 591 PQRRAL*GILNSSLSDRTGDLTLTYVC*PRNWRGHVSDLRFHIPALSKVKRIAVHDCGYT 412
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
W+V R T S RLY FL +G H P IPT KK PS + M+FS F TIS K+R S
Sbjct: 411 WVVQRETASKRLYPFLLAGVHVPFSIPTTKKEYPSKCHD*MVFSLF*NTISTKLRYSTFS 232
Query: 45 T 43
T
Sbjct: 231 T 229
>gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 3', mRNA
sequence
Length = 630
Score = 197 bits (425), Expect = 6e-050
Identities = 78/126 (61%), Positives = 95/126 (75%)
Frame = +2 / +1
Query: 56 EFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQVYP 235
E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK YNL D VSR T QVYP
Sbjct: 4 EYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQVYP 183
Query: 236 RSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCGKVV 415
+SWTA++LTFDNAGMW++ S IW R YLG+Q YI V + RS RDEY++P NAL CGK
Sbjct: 184 QSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCGKAR 363
Query: 416 GLPLPP 433
G P P
Sbjct: 364 GRPRLP 381
Score = 119 bits (254), Expect = 2e-026
Identities = 60/117 (51%), Positives = 72/117 (61%)
Frame = -1 / -2
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D TLM C PR +R+ + + H+PALS V AVHD GYT
Sbjct: 353 PQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYT 174
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 55
W+V R T S RL FL +G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 173 WVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 3
>gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 5', mRNA
sequence
Length = 732
Score = 197 bits (425), Expect = 6e-050
Identities = 78/129 (60%), Positives = 96/129 (74%)
Frame = +2 / -2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H DGY+FF VGM G+W+P RK YNL D VSR T Q
Sbjct: 596 LSVEYRTFVEIVFQNYENTIQSWHSDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 417
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP+SWTA++LTFDNAGMW++ S IW R YLG+Q YI V + RS RDEY++P NAL CG
Sbjct: 416 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCG 237
Query: 407 KVVGLPLPP 433
K G P P
Sbjct: 236 KARGRPRLP 210
Score = 119 bits (254), Expect = 2e-026
Identities = 60/117 (51%), Positives = 72/117 (61%)
Frame = -1 / +1
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D TLM C PR +R+ + + H+PALS V AVHD GYT
Sbjct: 238 PQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYT 417
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 55
W+V R T S RL FL +G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 418 WVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSECHDWIVFS*FWNTISTKVRYS 588
>gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_A01_A029 3', mRNA sequence
Length = 784
Score = 194 bits (418), Expect = 5e-049
Identities = 75/121 (61%), Positives = 94/121 (77%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK YNL D VSR T Q
Sbjct: 68 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 247
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP+SWTA++LTFDNAGMW++ S IW R YLG+Q YI V + RS RDEY++P NAL CG
Sbjct: 248 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCG 427
Query: 407 K 409
K
Sbjct: 428 K 430
Score = 119 bits (254), Expect = 2e-026
Identities = 60/117 (51%), Positives = 72/117 (61%)
Frame = -1 / -2
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D TLM C PR +R+ + + H+PALS V AVHD GYT
Sbjct: 426 PQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYT 247
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 55
W+V R T S RL FL +G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 246 WVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 76
>gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_073_G01 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 478
Score = 192 bits (414), Expect = 2e-048
Identities = 74/121 (61%), Positives = 93/121 (76%)
Frame = +2 / +3
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK YNL D VSR T Q
Sbjct: 42 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 221
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
VYP+SWTA++LTFDNAGMW++ S IW R YLG+Q YI V + R RDEY++P NAL CG
Sbjct: 222 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRXARDEYDIPHNALLCG 401
Query: 407 K 409
K
Sbjct: 402 K 404
Score = 116 bits (247), Expect = 2e-025
Identities = 59/117 (50%), Positives = 71/117 (60%)
Frame = -1 / -1
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS + TLM C PR +R+ + + H+PALS V AVHD GYT
Sbjct: 400 PQRRAL*GISYSSLAXLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYT 221
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 55
W+V R T S RL FL +G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 220 WVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 50
>gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_D04_A029 3', mRNA sequence
Length = 647
Score = 190 bits (410), Expect = 7e-048
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +2
Query: 71 IEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTA 250
+EIVF+N E +I S H+DGYAFF VG+ G W+P RK YNL D VSR T QVYP SWTA
Sbjct: 2 VEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKNYNLFDAVSRCTTQVYPNSWTA 181
Query: 251 IMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCGKVVGLPLP 430
I+LTFDNAG+W++ S WER +LG+Q Y+ V SP +SLRDEY++P NAL CGK G P
Sbjct: 182 ILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCGKATGRPRL 361
Query: 431 P 433
P
Sbjct: 362 P 364
Score = 102 bits (218), Expect = 2e-021
Identities = 54/111 (48%), Positives = 67/111 (60%)
Frame = -1 / -3
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
PQRRAL G+ YSS +D G+ TL C PR RS + + H PALS V +AVH+ GYT
Sbjct: 336 PQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKRMAVHEFGYT 157
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTIS 73
+V R T S RL FL +G P PT KKA PS ++ ++FS F TIS
Sbjct: 156 *VVQRETASKRL*FFLFAGVQSPPSNPTTKKAYPSKCQDWIVFS*FWNTIS 4
>gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 3', mRNA sequence
Length = 730
Score = 185 bits (399), Expect = 2e-046
Identities = 73/131 (55%), Positives = 95/131 (72%)
Frame = +2 / +1
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNL 196
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL
Sbjct: 88 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 267
Query: 197 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEY 376
DTVSR T QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SPA S RDEY
Sbjct: 268 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 447
Query: 377 NMPDNALRCGK 409
++P+NAL+CG+
Sbjct: 448 SIPNNALKCGR 480
Score = 105 bits (224), Expect = 3e-022
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = -1 / -3
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RAL G+ YSS ++ AGE T *NC PR R+Q + H+P LS + IAVH+ G T
Sbjct: 476 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 297
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
+V R TVS++LY F+ + H+P IP K *PS + ++ S F KTISMK S +
Sbjct: 296 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 117
Query: 45 T 43
T
Sbjct: 116 T 114
>gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 3', mRNA sequence
Length = 825
Score = 185 bits (399), Expect = 2e-046
Identities = 73/131 (55%), Positives = 95/131 (72%)
Frame = +2 / +1
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNL 196
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL
Sbjct: 190 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 369
Query: 197 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEY 376
DTVSR T QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SPA S RDEY
Sbjct: 370 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 549
Query: 377 NMPDNALRCGK 409
++P+NAL+CG+
Sbjct: 550 SIPNNALKCGR 582
Score = 105 bits (224), Expect = 3e-022
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = -1 / -2
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RAL G+ YSS ++ AGE T *NC PR R+Q + H+P LS + IAVH+ G T
Sbjct: 578 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 399
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
+V R TVS++LY F+ + H+P IP K *PS + ++ S F KTISMK S +
Sbjct: 398 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 219
Query: 45 T 43
T
Sbjct: 218 T 216
>gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 5', mRNA sequence
Length = 846
Score = 185 bits (399), Expect = 2e-046
Identities = 73/131 (55%), Positives = 95/131 (72%)
Frame = +2 / +2
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNL 196
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL
Sbjct: 209 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 388
Query: 197 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEY 376
DTVSR T QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SPA S RDEY
Sbjct: 389 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 568
Query: 377 NMPDNALRCGK 409
++P+NAL+CG+
Sbjct: 569 SIPNNALKCGR 601
Score = 105 bits (224), Expect = 3e-022
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = -1 / -1
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RAL G+ YSS ++ AGE T *NC PR R+Q + H+P LS + IAVH+ G T
Sbjct: 597 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 418
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
+V R TVS++LY F+ + H+P IP K *PS + ++ S F KTISMK S +
Sbjct: 417 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 238
Query: 45 T 43
T
Sbjct: 237 T 235
>gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_22_E05_A032 5', mRNA sequence
Length = 669
Score = 185 bits (399), Expect = 2e-046
Identities = 73/131 (55%), Positives = 95/131 (72%)
Frame = +2 / +3
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNL 196
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL
Sbjct: 267 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 446
Query: 197 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEY 376
DTVSR T QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SPA S RDEY
Sbjct: 447 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 626
Query: 377 NMPDNALRCGK 409
++P+NAL+CG+
Sbjct: 627 SIPNNALKCGR 659
Score = 105 bits (224), Expect = 3e-022
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = -1 / -3
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RAL G+ YSS ++ AGE T *NC PR R+Q + H+P LS + IAVH+ G T
Sbjct: 655 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 476
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
+V R TVS++LY F+ + H+P IP K *PS + ++ S F KTISMK S +
Sbjct: 475 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 296
Query: 45 T 43
T
Sbjct: 295 T 293
>gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_G10_A032 3', mRNA sequence
Length = 696
Score = 185 bits (399), Expect = 2e-046
Identities = 73/131 (55%), Positives = 95/131 (72%)
Frame = +2 / +1
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNL 196
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL
Sbjct: 58 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 237
Query: 197 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEY 376
DTVSR T QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SPA S RDEY
Sbjct: 238 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 417
Query: 377 NMPDNALRCGK 409
++P+NAL+CG+
Sbjct: 418 SIPNNALKCGR 450
Score = 105 bits (224), Expect = 3e-022
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = -1 / -2
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RAL G+ YSS ++ AGE T *NC PR R+Q + H+P LS + IAVH+ G T
Sbjct: 446 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 267
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
+V R TVS++LY F+ + H+P IP K *PS + ++ S F KTISMK S +
Sbjct: 266 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 87
Query: 45 T 43
T
Sbjct: 86 T 84
>gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F12_A029 3', mRNA sequence
Length = 664
Score = 185 bits (399), Expect = 2e-046
Identities = 73/131 (55%), Positives = 95/131 (72%)
Frame = +2 / +1
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNL 196
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL
Sbjct: 19 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 198
Query: 197 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEY 376
DTVSR T QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SPA S RDEY
Sbjct: 199 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 378
Query: 377 NMPDNALRCGK 409
++P+NAL+CG+
Sbjct: 379 SIPNNALKCGR 411
Score = 105 bits (224), Expect = 3e-022
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = -1 / -3
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RAL G+ YSS ++ AGE T *NC PR R+Q + H+P LS + IAVH+ G T
Sbjct: 407 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 228
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
+V R TVS++LY F+ + H+P IP K *PS + ++ S F KTISMK S +
Sbjct: 227 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 48
Query: 45 T 43
T
Sbjct: 47 T 45
>gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_E02_A029 3', mRNA sequence
Length = 834
Score = 185 bits (399), Expect = 2e-046
Identities = 73/131 (55%), Positives = 95/131 (72%)
Frame = +2 / +1
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNL 196
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL
Sbjct: 190 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 369
Query: 197 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEY 376
DTVSR T QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SPA S RDEY
Sbjct: 370 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 549
Query: 377 NMPDNALRCGK 409
++P+NAL+CG+
Sbjct: 550 SIPNNALKCGR 582
Score = 105 bits (224), Expect = 3e-022
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = -1 / -2
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RAL G+ YSS ++ AGE T *NC PR R+Q + H+P LS + IAVH+ G T
Sbjct: 578 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 399
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
+V R TVS++LY F+ + H+P IP K *PS + ++ S F KTISMK S +
Sbjct: 398 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 219
Query: 45 T 43
T
Sbjct: 218 T 216
>gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D08 5', mRNA sequence
Length = 504
Score = 184 bits (396), Expect = 6e-046
Identities = 71/122 (58%), Positives = 91/122 (74%)
Frame = +2 / +2
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL DTVSR T
Sbjct: 20 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 199
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRC 403
QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SPA S RDEY++P+NAL+C
Sbjct: 200 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 379
Query: 404 GK 409
G+
Sbjct: 380 GR 385
Score = 105 bits (224), Expect = 3e-022
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = -1 / -1
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RAL G+ YSS ++ AGE T *NC PR R+Q + H+P LS + IAVH+ G T
Sbjct: 381 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 202
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
+V R TVS++LY F+ + H+P IP K *PS + ++ S F KTISMK S +
Sbjct: 201 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 22
Query: 45 T 43
T
Sbjct: 21 T 19
>gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D08 5' similar to Arabidopsis thaliana sequence
At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 504
Score = 184 bits (396), Expect = 6e-046
Identities = 71/122 (58%), Positives = 91/122 (74%)
Frame = +2 / +2
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL DTVSR T
Sbjct: 20 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 199
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRC 403
QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SPA S RDEY++P+NAL+C
Sbjct: 200 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 379
Query: 404 GK 409
G+
Sbjct: 380 GR 385
Score = 105 bits (224), Expect = 3e-022
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = -1 / -1
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RAL G+ YSS ++ AGE T *NC PR R+Q + H+P LS + IAVH+ G T
Sbjct: 381 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 202
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
+V R TVS++LY F+ + H+P IP K *PS + ++ S F KTISMK S +
Sbjct: 201 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 22
Query: 45 T 43
T
Sbjct: 21 T 19
>gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F12_A029 5', mRNA sequence
Length = 655
Score = 184 bits (396), Expect = 6e-046
Identities = 71/122 (58%), Positives = 91/122 (74%)
Frame = +2 / +1
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL DTVSR T
Sbjct: 13 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 192
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRC 403
QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SPA S RDEY++P+NAL+C
Sbjct: 193 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 372
Query: 404 GK 409
G+
Sbjct: 373 GR 378
Score = 105 bits (224), Expect = 3e-022
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = -1 / -3
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RAL G+ YSS ++ AGE T *NC PR R+Q + H+P LS + IAVH+ G T
Sbjct: 374 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 195
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 46
+V R TVS++LY F+ + H+P IP K *PS + ++ S F KTISMK S +
Sbjct: 194 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 15
Query: 45 T 43
T
Sbjct: 14 T 12
>gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_H11_A034 3', mRNA sequence
Length = 784
Score = 183 bits (395), Expect = 8e-046
Identities = 72/131 (54%), Positives = 94/131 (71%)
Frame = +2 / +1
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNL 196
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL
Sbjct: 139 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 318
Query: 197 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEY 376
DTVSR T QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SP S RDEY
Sbjct: 319 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSFRDEY 498
Query: 377 NMPDNALRCGK 409
++P+NAL+CG+
Sbjct: 499 SIPNNALKCGR 531
>gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_F03_A029 3', mRNA sequence
Length = 703
Score = 182 bits (392), Expect = 2e-045
Identities = 70/122 (57%), Positives = 90/122 (73%)
Frame = +2 / +1
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL DTVSR T
Sbjct: 88 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 267
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRC 403
QVYP SWTAI + DN GMW++ S W R YLG+QFY+ V SP S RDEY++P+NAL+C
Sbjct: 268 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSFRDEYSIPNNALKC 447
Query: 404 GK 409
G+
Sbjct: 448 GR 453
>gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110F04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 521
Score = 181 bits (390), Expect = 4e-045
Identities = 70/116 (60%), Positives = 89/116 (76%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK YNL D VSR T Q
Sbjct: 173 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 352
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNA 394
VYP+SWTA++LTFDNAGMW++ S IW R YLG+ YI V + RS RDEY++P NA
Sbjct: 353 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQXTYIKVKTLVRSARDEYDIPHNA 520
Score = 104 bits (221), Expect = 8e-022
Identities = 55/113 (48%), Positives = 67/113 (59%)
Frame = -1 / -3
Query: 393 ALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYTWIVC 214
AL G+ YSS +D TLM PR +R+ + + H+PALS V AVHD GYTW+V
Sbjct: 519 AL*GISYSSLADLTRVFTLMYVX*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYTWVVQ 340
Query: 213 RLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 55
R T S RL FL +G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 339 RETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 181
>gb|AI812692.1|AI812692 17H9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 524
Score = 176 bits (379), Expect = 1e-043
Identities = 68/111 (61%), Positives = 86/111 (77%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK YNL D VSR T Q
Sbjct: 191 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 370
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYN 379
VYP+SWTA++LTFDNAGMW++ S IW R YLG+Q YI V + RS RDEY+
Sbjct: 371 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYD 523
Score = 105 bits (223), Expect = 4e-022
Identities = 53/107 (49%), Positives = 64/107 (59%)
Frame = -1 / -3
Query: 375 YSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYTWIVCRLTVSS 196
YSS +D TLM C PR +R+ + + H+PALS V AVHD GYTW+V R T S
Sbjct: 519 YSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYTWVVQRETASK 340
Query: 195 RLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 55
RL FL +G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 339 RL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 199
>gb|CO200683.1|CO200683 GEO2_8_H04.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_H04_A032 5', mRNA sequence
Length = 815
Score = 175 bits (377), Expect = 2e-043
Identities = 66/111 (59%), Positives = 85/111 (76%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK+YNL D VSR T Q
Sbjct: 482 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 661
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYN 379
VYP SWTAI+LTFDNAG+W++ S WER +LG+Q Y+ V SP +SL+DEY+
Sbjct: 662 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLKDEYD 814
>gb|BQ198615.1|BQ198615 NXLV133_F09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV133_F09 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 690
Score = 173 bits (373), Expect = 9e-043
Identities = 69/120 (57%), Positives = 87/120 (72%)
Frame = +2 / +3
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P K YNL D VSR T Q
Sbjct: 330 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASXKYYNLFDAVSRCTTQ 509
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCG 406
V P+SWTA++LTFDNAGMW++ S IW R YLG+Q YI V + RS DEY+ P AL G
Sbjct: 510 VXPQSWTAVLLTFDNAGMWNLRSEIWXRQYLGQQTYIXVKTLVRSXXDEYDXPHXALLXG 689
Score = 101 bits (215), Expect = 5e-021
Identities = 54/117 (46%), Positives = 63/117 (53%)
Frame = -1 / -3
Query: 405 PQRRALSGMLYSSRSDRAGETTLM*NCSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYT 226
P RRA G YSS D T M C PR +R + + H+PALS V AVHD G T
Sbjct: 688 PXRRAX*GXSYSSXXDLTRVFTXMYVC*PRYWRXHISDRRFHIPALSKVKRTAVHDCGXT 509
Query: 225 WIVCRLTVSSRLYVFLTSGDHFPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 55
W+V R T S RL +G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 508 WVVQRETASKRL*YXXLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 338
>gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 5', mRNA sequence
Length = 858
Score = 161 bits (346), Expect(2) = 1e-041
Identities = 61/100 (61%), Positives = 77/100 (77%)
Frame = +2 / -3
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V + +FR+FIEIVF+N E +I S HVDGY+FF GM G+WSP RK+YNL D VSR T
Sbjct: 604 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 425
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISV 343
QVYP+SWTAI++ DNAGMW++ S +W R YLG+QFY+ V
Sbjct: 424 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 305
Score = 28.6 bits (56), Expect(2) = 1e-041
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2 / -3
Query: 368 DEYNMPDNALRCGKVVG 418
DEY+ P NAL CG+ G
Sbjct: 286 DEYSAPRNALMCGRARG 236
>gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_35_F12_A029 3', mRNA sequence
Length = 817
Score = 161 bits (346), Expect(2) = 1e-041
Identities = 61/100 (61%), Positives = 77/100 (77%)
Frame = +2 / +1
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V + +FR+FIEIVF+N E +I S HVDGY+FF GM G+WSP RK+YNL D VSR T
Sbjct: 166 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 345
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISV 343
QVYP+SWTAI++ DNAGMW++ S +W R YLG+QFY+ V
Sbjct: 346 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 465
Score = 28.6 bits (56), Expect(2) = 1e-041
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 368 DEYNMPDNALRCGKVVG 418
DEY+ P NAL CG+ G
Sbjct: 484 DEYSAPRNALMCGRARG 534
>gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_6_C08_A029 5', mRNA sequence
Length = 789
Score = 161 bits (346), Expect(2) = 1e-041
Identities = 61/100 (61%), Positives = 77/100 (77%)
Frame = +2 / +1
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V + +FR+FIEIVF+N E +I S HVDGY+FF GM G+WSP RK+YNL D VSR T
Sbjct: 349 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 528
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISV 343
QVYP+SWTAI++ DNAGMW++ S +W R YLG+QFY+ V
Sbjct: 529 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 648
Score = 28.6 bits (56), Expect(2) = 1e-041
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 368 DEYNMPDNALRCGKVVG 418
DEY+ P NAL CG+ G
Sbjct: 667 DEYSAPRNALMCGRARG 717
>gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_5_A12_A029 5', mRNA sequence
Length = 689
Score = 161 bits (346), Expect(2) = 1e-041
Identities = 61/100 (61%), Positives = 77/100 (77%)
Frame = +2 / -3
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V + +FR+FIEIVF+N E +I S HVDGY+FF GM G+WSP RK+YNL D VSR T
Sbjct: 660 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 481
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISV 343
QVYP+SWTAI++ DNAGMW++ S +W R YLG+QFY+ V
Sbjct: 480 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 361
Score = 28.6 bits (56), Expect(2) = 1e-041
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2 / -3
Query: 368 DEYNMPDNALRCGKVVG 418
DEY+ P NAL CG+ G
Sbjct: 342 DEYSAPRNALMCGRARG 292
>gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 3', mRNA sequence
Length = 862
Score = 161 bits (346), Expect(2) = 6e-041
Identities = 61/100 (61%), Positives = 77/100 (77%)
Frame = +2 / -2
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V + +FR+FIEIVF+N E +I S HVDGY+FF GM G+WSP RK+YNL D VSR T
Sbjct: 357 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 178
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISV 343
QVYP+SWTAI++ DNAGMW++ S +W R YLG+QFY+ V
Sbjct: 177 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 58
Score = 26.3 bits (51), Expect(2) = 6e-041
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2 / -2
Query: 368 DEYNMPDNALRCG 406
DEY+ P NAL CG
Sbjct: 39 DEYSAPRNALMCG 1
>gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_45_E01_A029 3', mRNA sequence
Length = 679
Score = 155 bits (334), Expect(2) = 6e-040
Identities = 59/96 (61%), Positives = 74/96 (77%)
Frame = +2 / +2
Query: 56 EFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQVYP 235
+FR+FIEIV +N E +I S HVDGY+FF GM G+WSP RK+YNL D VSR T QVYP
Sbjct: 5 QFRSFIEIVSQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTTQVYP 184
Query: 236 RSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISV 343
+SWTAI++ DNAGMW++ S +W R YLG+QFY+ V
Sbjct: 185 QSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 292
Score = 28.6 bits (56), Expect(2) = 6e-040
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2 / +2
Query: 368 DEYNMPDNALRCGKVVG 418
DEY+ P NAL CG+ G
Sbjct: 311 DEYSAPRNALMCGRARG 361
>gb|CO158324.1|CO158324 FLD1_6_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_6_E04_A029 3', mRNA sequence
Length = 705
Score = 151 bits (324), Expect(2) = 3e-039
Identities = 57/97 (58%), Positives = 72/97 (74%)
Frame = +2 / +1
Query: 119 VDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSN 298
+DGY+FF +GM G+W+ K YNL DTVSR T QVYP SWTAI + DN GMW++ S
Sbjct: 166 LDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSE 345
Query: 299 IWERYYLGEQFYISVVSPARSLRDEYNMPDNALRCGK 409
W R YLG+QFY+ V SPA S RDEY++P+NAL+CG+
Sbjct: 346 NWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKCGR 456
Score = 30.9 bits (61), Expect(2) = 3e-039
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2 / +2
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPE 97
NG ++ V+ ++FR FIEIVF+N E
Sbjct: 62 NGGGYLQTAVMGSDFRAFIEIVFQNSE 142
>gb|BX784299.1|BX784299 BX784299 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132C01 similar to L-ASCORBATE OXIDASE (EC
1.10.3.3), mRNA sequence
Length = 407
Score = 160 bits (343), Expect = 1e-038
Identities = 61/99 (61%), Positives = 78/99 (78%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK Y+L D VSR T Q
Sbjct: 110 LSVEYRTFVEIVFQNYENTIPSWHLDGYSFFVVGMDGGEWTPASRKYYHLFDAVSRCTTQ 289
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISV 343
VYP+SWTA++LTFDNAGMW++ S IW R YLG+Q YI V
Sbjct: 290 VYPQSWTAVLLTFDNAGMWNLRSEIWARPYLGQQTYIKV 406
>gb|DR079744.1|DR079744 RTFEPL1_17_G07.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_17_G07_A029 3', mRNA sequence
Length = 575
Score = 152 bits (327), Expect = 2e-036
Identities = 58/96 (60%), Positives = 71/96 (73%)
Frame = +2 / +1
Query: 146 GMGPGKWSPEVRKTYNLLDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGE 325
G+ G W+P RK+YNL D VSR T QVYP SWTAI+LTFDNAG+W++ S WER +LG+
Sbjct: 1 GLDGGDWTPANRKSYNLFDAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQ 180
Query: 326 QFYISVVSPARSLRDEYNMPDNALRCGKVVGLPLPP 433
Q Y+ V SP +SLRDEY++P NAL CGK G P P
Sbjct: 181 QTYVRVKSPVKSLRDEYDIPHNALLCGKATGRPRLP 288
>gb|DR054782.1|DR054782 RTCA1_19_C02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 5', mRNA sequence
Length = 717
Score = 152 bits (326), Expect = 3e-036
Identities = 58/97 (59%), Positives = 72/97 (74%)
Frame = +2 / +3
Query: 44 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTI 223
V+ E+R F+EIVF+N E +I S H+DGY+FF VGM G W+P R YNL D VSR T
Sbjct: 426 VLNVEYRNFVEIVFQNNENTIQSWHLDGYSFFVVGMENGTWTPASRNGYNLFDAVSRCTT 605
Query: 224 QVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFY 334
QVYP+SWTAI+LTFDNAGMW++ S W R +LG+Q Y
Sbjct: 606 QVYPQSWTAILLTFDNAGMWNLRSETWPRQFLGQQTY 716
Score = 104 bits (222), Expect = 6e-022
Identities = 49/95 (51%), Positives = 58/95 (61%)
Frame = -1 / -3
Query: 327 CSPR*YRSQMLECTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLTSGDHFPGPI 148
C PR +R + + H+PALS V IAVHD GYTW+V R T S RLY FL +G H P I
Sbjct: 709 C*PRNWRGHVSDLRFHIPALSKVKRIAVHDCGYTWVVQRETASKRLYPFLLAGVHVPFSI 530
Query: 147 PTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMT 43
PT KK PS + M+FS F TIS K+R S T
Sbjct: 529 PTTKKEYPSKCHD*MVFSLF*NTISTKLRYSTFST 425
>gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 5', mRNA sequence
Length = 804
Score = 151 bits (325), Expect = 4e-036
Identities = 61/113 (53%), Positives = 78/113 (69%)
Frame = +2 / +3
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNL 196
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL
Sbjct: 462 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 641
Query: 197 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPA 355
DTVSR T QVYP SWTAI + DN G W++ S W R YLG+QFY+ V SPA
Sbjct: 642 FDTVSRCTTQVYPNSWTAIRVPLDNVGKWNLRSENWARQYLGQQFYLRVYSPA 800
>gb|CO160828.1|CO160828 FLD1_24_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_24_F07_A029 5', mRNA sequence
Length = 768
Score = 149 bits (321), Expect = 1e-035
Identities = 56/90 (62%), Positives = 71/90 (78%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK YNL D VSR T Q
Sbjct: 497 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 676
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYY 316
VYP+SWTA++LTFDNAGMW++ S IW R Y
Sbjct: 677 VYPQSWTAVLLTFDNAGMWNLRSEIWARQY 766
>gb|CO196970.1|CO196970 GEO1_3_A11.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_A11_A029 3', mRNA sequence
Length = 599
Score = 145 bits (311), Expect = 3e-034
Identities = 54/133 (40%), Positives = 88/133 (66%)
Frame = +2 / -3
Query: 41 NVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHT 220
++I ++ F+EI+ +N + ++ S H+DGYAFF VGM G W+ + R TYN D V+R T
Sbjct: 534 SIINGTYKGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGDWTEDSRGTYNKWDGVARAT 355
Query: 221 IQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALR 400
QV+P +WTAI+++ DN GMW++ + + +YLG++ Y+ VV+P + + E +P NAL
Sbjct: 354 AQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALY 175
Query: 401 CGKVVGLPLPPSY 439
CG + + P S+
Sbjct: 174 CGALSRMQKPQSH 136
>gb|CO196976.1|CO196976 GEO1_3_B11.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_B11_A029 3', mRNA sequence
Length = 621
Score = 145 bits (311), Expect = 3e-034
Identities = 54/133 (40%), Positives = 88/133 (66%)
Frame = +2 / -3
Query: 41 NVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHT 220
++I ++ F+EI+ +N + ++ S H+DGYAFF VGM G W+ + R TYN D V+R T
Sbjct: 556 SIINGTYKGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGDWTEDSRGTYNKWDGVARAT 377
Query: 221 IQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALR 400
QV+P +WTAI+++ DN GMW++ + + +YLG++ Y+ VV+P + + E +P NAL
Sbjct: 376 AQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALY 197
Query: 401 CGKVVGLPLPPSY 439
CG + + P S+
Sbjct: 196 CGALSRMQKPQSH 158
>gb|DR011228.1|DR011228 HEAT1_4_H03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_4_H03_A029 3', mRNA sequence
Length = 750
Score = 145 bits (311), Expect = 3e-034
Identities = 54/133 (40%), Positives = 88/133 (66%)
Frame = +2 / -1
Query: 41 NVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHT 220
++I ++ F+EI+ +N + ++ S H+DGYAFF VGM G W+ + R TYN D V+R T
Sbjct: 594 SIINGTYKGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGDWTEDSRGTYNKWDGVARAT 415
Query: 221 IQVYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISVVSPARSLRDEYNMPDNALR 400
QV+P +WTAI+++ DN GMW++ + + +YLG++ Y+ VV+P + + E +P NAL
Sbjct: 414 AQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPSNALY 235
Query: 401 CGKVVGLPLPPSY 439
CG + + P S+
Sbjct: 234 CGALSRMQKPQSH 196
>gb|BQ696747.1|BQ696747 NXPV_044_G07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_044_G07 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 582
Score = 141 bits (303), Expect = 4e-033
Identities = 53/86 (61%), Positives = 68/86 (79%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK YNL D VSR T Q
Sbjct: 293 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 472
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIW 304
VYP+SWTA++LTFDNA MW++ S IW
Sbjct: 473 VYPQSWTAVLLTFDNAXMWNLRSXIW 550
>gb|BQ697562.1|BQ697562 NXPV_058_A01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_058_A01 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 602
Score = 138 bits (297), Expect = 3e-032
Identities = 55/99 (55%), Positives = 70/99 (70%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+ GY+FF VGM +W+P K YNL D VSR T Q
Sbjct: 293 LSVEYRTFVEIVFQNYENTIQSWHLXGYSFFVVGMDGXEWTPAXXKYYNLFDAVSRCTTQ 472
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISV 343
YP+SWTA++LTFDNA MW++ S I R YL Q YI V
Sbjct: 473 XYPQSWTAVLLTFDNAXMWNLRSEIXARQYLXXQTYIKV 589
>gb|BG318141.1|BG318141 NXPV_010_H11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_H11 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 135 bits (289), Expect = 3e-031
Identities = 53/91 (58%), Positives = 67/91 (73%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G+W+P RK YNL D VSR T Q
Sbjct: 293 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 472
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYL 319
VYP+SWTA++LT DNA M + S IW R L
Sbjct: 473 VYPQSWTAVLLTXDNAXMXXLRSEIWXRQIL 565
>gb|BM428215.1|BM428215 NXRV_013_H12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_013_H12 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 626
Score = 133 bits (284), Expect = 2e-030
Identities = 53/99 (53%), Positives = 66/99 (66%)
Frame = +2 / +2
Query: 47 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNLLDTVSRHTIQ 226
++ E+RTF+EIV N E +I S H+DGY+FF VGM G+W+P K YNL D VSR T Q
Sbjct: 323 LSVEYRTFVEIVXXNYENTIQSWHLDGYSFFVVGMDGGEWTPASXKYYNLFDAVSRXTTQ 502
Query: 227 VYPRSWTAIMLTFDNAGMWSVHSNIWERYYLGEQFYISV 343
VYP S T ++LT DNAGMW++ S IW R Y Y V
Sbjct: 503 VYPXSXTXVLLTXDNAGMWNLRSXIWARQYXXXXTYXKV 619
>gb|DR019423.1|DR019423 STRS1_29_H11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_H11_A034 5', mRNA sequence
Length = 703
Score = 129 bits (276), Expect = 2e-029
Identities = 52/98 (53%), Positives = 67/98 (68%)
Frame = +2 / +1
Query: 17 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGKWSPEVRKTYNL 196
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G+W+ K YNL
Sbjct: 409 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 588
Query: 197 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVHSNIWER 310
DTVSR T QVYP SWTAI + DN GMW++ S W R
Sbjct: 589 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWAR 702
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 310,229,515
Number of Sequences: 355925
Number of extensions: 4091178
Number of successful extensions: 49034
Number of sequences better than 1.0e-020: 93
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9219917295
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)