TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.1
(1469 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO200683.1|CO200683 GEO2_8_H04.g1_A032 Root gravitropism... 178 1e-085
gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus... 163 2e-084
gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism... 203 1e-082
gb|CO160828.1|CO160828 FLD1_24_F07.g1_A029 Root flooded Pin... 151 2e-081
gb|DT631597.1|DT631597 EST1146528 Normalized pine embryo li... 116 5e-079
gb|CF663138.1|CF663138 RTCNT1_1_B03.b1_A029 Root control Pi... 193 1e-076
gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pi... 153 2e-075
gb|DR054782.1|DR054782 RTCA1_19_C02.g1_A029 Roots minus cal... 158 3e-073
gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism... 203 1e-072
gb|DR683393.1|DR683393 EST1073469 Normalized pine embryo li... 116 2e-071
gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated w... 187 2e-071
gb|BQ198615.1|BQ198615 NXLV133_F09_F NXLV (Nsf Xylem Late w... 174 2e-067
gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus pota... 203 6e-067
gb|CO158404.1|CO158404 FLD1_6_E04.g1_A029 Root flooded Pinu... 118 1e-066
gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus cal... 204 2e-065
gb|DR120585.1|DR120585 RTMG1_30_E02.g1_A029 Roots minus mag... 123 6e-065
gb|DR019423.1|DR019423 STRS1_29_H11.g1_A034 Shoot tip pitch... 131 1e-064
gb|BQ696747.1|BQ696747 NXPV_044_G07_F NXPV (Nsf Xylem Plani... 143 2e-063
gb|CO197261.1|CO197261 GEO1_5_A12.b1_A029 Root gravitropism... 243 3e-063
gb|BM428215.1|BM428215 NXRV_013_H12_F NXRV (Nsf Xylem Root ... 134 1e-062
gb|BQ697562.1|BQ697562 NXPV_058_A01_F NXPV (Nsf Xylem Plani... 139 2e-062
gb|BG318141.1|BG318141 NXPV_010_H11_F NXPV (Nsf Xylem Plani... 136 2e-061
gb|AL750537.1|AL750537 AL750537 RN Pinus pinaster cDNA clon... 136 3e-061
gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus... 163 1e-060
gb|AL750713.1|AL750713 AL750713 RN Pinus pinaster cDNA clon... 120 3e-060
gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated wi... 187 6e-060
gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus mag... 187 1e-058
gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated wi... 187 1e-058
gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control P... 203 1e-058
gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciat... 199 3e-057
gb|BF609099.1|BF609099 NXSI_040_D04_F NXSI (Nsf Xylem Side ... 127 7e-055
gb|DR180938.1|DR180938 RTMNUT1_35_F12.g1_A029 Roots minus m... 210 1e-053
gb|AI812966.1|AI812966 2B1 Pine Lambda Zap Xylem library Pi... 108 2e-053
gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine ro... 198 2e-053
gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciat... 182 5e-052
gb|AI812692.1|AI812692 17H9 Pine Lambda Zap Xylem library P... 177 1e-051
gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus... 204 1e-051
gb|DR071393.1|DR071393 RTDK1_19_C07.g1_A029 Roots, dark Pin... 204 1e-051
gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch... 185 1e-051
gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciat... 203 3e-051
gb|BE241098.1|BE241098 NXNV_171_F12_F Nsf Xylem Normal wood... 140 9e-051
gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciat... 199 3e-050
gb|CX715391.1|CX715391 RTPQ1_33_G10.g1_A032 Roots treated w... 123 3e-050
gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine ro... 198 8e-050
gb|CX648550.1|CX648550 COLD1_29_H06.b1_A029 Root cold Pinus... 125 1e-049
gb|BI397653.1|BI397653 NXPV_102_H10_F NXPV (Nsf Xylem Plani... 120 3e-049
gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus... 195 7e-049
gb|BI397648.1|BI397648 NXPV_102_G12_F NXPV (Nsf Xylem Plani... 120 2e-048
gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side ... 193 3e-048
gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pi... 193 3e-048
gb|DR692108.1|DR692108 EST1082195 Normalized pine embryo li... 114 4e-048
gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus m... 163 4e-048
gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pi... 187 2e-047
gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated w... 187 2e-046
gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calc... 187 2e-046
gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Ve... 186 4e-046
gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Ver... 186 4e-046
gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calc... 186 4e-046
gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control P... 184 1e-045
gb|BE241178.1|BE241178 NXNV_173_G07_F Nsf Xylem Normal wood... 109 2e-043
gb|DT637149.1|DT637149 EST1152080 Normalized pine embryo li... 118 6e-042
gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus ... 163 9e-042
gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism... 163 9e-042
gb|DR011228.1|DR011228 HEAT1_4_H03.b1_A029 Root at 37 C for... 147 8e-041
gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control P... 157 4e-040
gb|CO158324.1|CO158324 FLD1_6_E04.b1_A029 Root flooded Pinu... 153 2e-039
gb|BX784299.1|BX784299 BX784299 Pinus pinaster differenciat... 161 1e-038
gb|BF517224.1|BF517224 NXSI_011_H04_F NXSI (Nsf Xylem Side ... 103 7e-038
gb|BG832889.1|BG832889 NXPV_083_A04_F NXPV (Nsf Xylem Plani... 127 1e-037
gb|DR079744.1|DR079744 RTFEPL1_17_G07.b1_A029 Roots plus ad... 155 7e-037
gb|BE187087.1|BE187087 NXNV_155_C07_F Nsf Xylem Normal wood... 107 8e-037
gb|AW290098.1|AW290098 NXNV010H03F Nsf Xylem Normal wood Ve... 99 1e-036
gb|CD026773.1|CD026773 NXNV010H03 Nsf Xylem Normal wood Ver... 99 2e-036
gb|BQ634617.1|BQ634617 NXRV071_B08_F NXRV (Nsf Xylem Root w... 127 2e-035
gb|CO196970.1|CO196970 GEO1_3_A11.b1_A029 Root gravitropism... 147 2e-034
gb|CO196976.1|CO196976 GEO1_3_B11.b1_A029 Root gravitropism... 147 2e-034
gb|BE996786.1|BE996786 NXCI_101_A06_F NXCI (Nsf Xylem Compr... 141 1e-032
gb|BX678022.1|BX678022 BX678022 RN Pinus pinaster cDNA clon... 140 2e-032
gb|BQ654739.1|BQ654739 NXRV085_A07_F NXRV (Nsf Xylem Root w... 138 1e-031
gb|BE996867.1|BE996867 NXCI_103_D10_F NXCI (Nsf Xylem Compr... 133 3e-030
gb|BG832453.1|BG832453 NXPV_073_A05_F NXPV (Nsf Xylem Plani... 111 1e-029
gb|BF610098.1|BF610098 NXSI_054_G02_F NXSI (Nsf Xylem Side ... 131 1e-029
gb|DR120720.1|DR120720 RTMG1_31_B05.g1_A029 Roots minus mag... 131 1e-029
gb|AW698004.1|AW698004 NXNV_079_D10_F Nsf Xylem Normal wood... 130 3e-029
gb|AW043100.1|AW043100 ST29D02 Pine TriplEx shoot tip libra... 123 1e-028
gb|DR091892.1|DR091892 RTAL1_24_D12.g1_A029 Roots plus adde... 127 3e-028
gb|BM903277.1|BM903277 NXRV_036_B09_F NXRV (Nsf Xylem Root ... 124 1e-027
gb|CO201574.1|CO201574 RTCNT2_6_E06.g1_A029 Root control 2 ... 118 8e-026
gb|BQ698733.1|BQ698733 NXNV_063_A01_F Nsf Xylem Normal wood... 117 2e-025
gb|BF186451.1|BF186451 NXCI_137_F02_F NXCI (Nsf Xylem Compr... 98 2e-025
gb|BF777511.1|BF777511 NXSI_069_D09_F NXSI (Nsf Xylem Side ... 115 7e-025
gb|BM903440.1|BM903440 NXRV_041_F05_F NXRV (Nsf Xylem Root ... 104 2e-022
gb|BE241316.1|BE241316 NXNV_185_F10_F Nsf Xylem Normal wood... 59 7e-022
gb|BM367221.1|BM367221 NXLV_046_C05_F NXLV (Nsf Xylem Late ... 105 1e-021
gb|BM493349.1|BM493349 NXLV_061_G09_F NXLV (Nsf Xylem Late ... 104 1e-021
gb|CX650224.1|CX650224 COLD1_44_F10.b1_A029 Root cold Pinus... 104 2e-021
gb|DR011296.1|DR011296 HEAT1_4_H03.g1_A029 Root at 37 C for... 104 2e-021
gb|BM493829.1|BM493829 NXLV_070_A11_F NXLV (Nsf Xylem Late ... 103 3e-021
>gb|CO200683.1|CO200683 GEO2_8_H04.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_H04_A032 5', mRNA sequence
Length = 815
Score = 178 bits (383), Expect(3) = 1e-085
Identities = 67/111 (60%), Positives = 86/111 (77%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK+YNL D VSR T Q
Sbjct: 482 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 661
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYN 983
VYP SWTAI+LTFDNAG+W++RS WER +LG+Q Y+ V SP +SL+DEY+
Sbjct: 662 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLKDEYD 814
Score = 124 bits (266), Expect(3) = 1e-085
Identities = 50/78 (64%), Positives = 59/78 (75%)
Frame = +3 / +2
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P WS+NQARS RWNLTASAARPNPQGSYHYG I ITRTIK+ S I+GK RY N
Sbjct: 173 PTEIVWSLNQARSVRWNLTASAARPNPQGSYHYGNITITRTIKLANSAPFINGKQRYAVN 352
Query: 513 GISHRDPETPVKLAEYFN 566
G+S+ TP++LA+Y+N
Sbjct: 353 GVSYVPSTTPLQLADYYN 406
Score = 94.1 bits (199), Expect(3) = 2e-040
Identities = 49/103 (47%), Positives = 60/103 (58%)
Frame = -2 / -3
Query: 979 YSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSS 800
YSS +D G+ TL C PR RS D H PALS V +AVH+ GYT +V R T S
Sbjct: 810 YSSFNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKRMAVHEFGYT*VVQRETASK 631
Query: 799 RLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMK 671
RL +FL +G P PT KKA PS ++ ++FS F TIS K
Sbjct: 630 RL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTISTK 502
Score = 78.0 bits (164), Expect(3) = 2e-040
Identities = 39/75 (52%), Positives = 46/75 (61%)
Frame = -2 / -3
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SAS GV E P *R LP M E +L+VRVM+++P*W*+PCGLGRAALAV+F
Sbjct: 396 SASCNGVVEGT*ETPFTA*RCLPLMKGAEFASLIVRVMVMFP*W*DPCGLGRAALAVKFH 217
Query: 376 RNDLAWLMDQAQPAG 332
DLA D G
Sbjct: 216 LTDLA*FRDHTISVG 172
Score = 54.2 bits (112), Expect(3) = 1e-085
Identities = 25/51 (49%), Positives = 28/51 (54%)
Frame = +3 / +2
Query: 165 VHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
+HVG SVLV ADQA DYYMVASTRF + A Y+ S P
Sbjct: 8 LHVGQTYSVLVTADQASQDYYMVASTRFTSPVLTGIATFHYSNSQKKVSGP 160
Score = 33.1 bits (66), Expect(3) = 2e-040
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = -2 / -3
Query: 250 MNRVEATM**SPGAWSASTSTERQWPT 170
+ RV+ATM**S A SA T TE WPT
Sbjct: 93 VKRVDATM**S*DA*SAVTRTEYVWPT 13
>gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 3', mRNA sequence
Length = 862
Score = 163 bits (351), Expect(3) = 2e-084
Identities = 72/143 (50%), Positives = 92/143 (64%)
Frame = +3 / -2
Query: 135 TLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPA 314
+L + +D+HVG SVL+ A+Q P DYY+VASTRF + A++RY+ S
Sbjct: 861 SLLRIRHEVDIHVGQSCSVLITANQVPKDYYIVASTRFTTPVLNGVALLRYSNSRQPASG 682
Query: 315 PNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGK 494
P P WSINQA+S RWNLTA+AARPNPQGSYHYG I +RTI + S I+GK
Sbjct: 681 PLPPGPTIQIDWSINQAKSIRWNLTANAARPNPQGSYHYGLIKPSRTIILANSAPIINGK 502
Query: 495 LRYGFNGISHRDPETPVKLAEYF 563
RY NG+S +TP+KLA+YF
Sbjct: 501 QRYAVNGVSFLPLDTPLKLADYF 433
Score = 163 bits (350), Expect(3) = 2e-084
Identities = 62/100 (62%), Positives = 77/100 (77%)
Frame = +3 / -2
Query: 648 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTI 827
V + +FR+FIEIVF+N E +I S HVDGY+FF GM G WSP RK+YNL D VSR T
Sbjct: 357 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 178
Query: 828 QVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISV 947
QVYP+SWTAI++ DNAGMW++RS +W R YLG+QFY+ V
Sbjct: 177 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 58
Score = 99.1 bits (210), Expect(2) = 9e-042
Identities = 62/136 (45%), Positives = 72/136 (52%)
Frame = -2 / +2
Query: 565 LKYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAV 386
LK SASF GVS E P R P M E ++V + P* *EPCGLGRAALAV
Sbjct: 431 LK*SASFRGVSRGKKETPFTAYRCFPLMMGAELARMIVLEGFMRP***EPCGLGRAALAV 610
Query: 385 RFQRNDLAWLMDQAQPAGGSVMFGAGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAW 206
+F D AWL+DQ+ G G LE *R A + RV+ATM**S G W
Sbjct: 611 KFHLMDFAWLIDQSI*IVGPGGRGPEAGCLELL*RRRATPFNTGVVKRVDATM**SLGTW 790
Query: 205 SASTSTERQWPTCTSS 158
A STE+ PT S+
Sbjct: 791 FAVMSTEQD*PTWIST 838
Score = 92.7 bits (196), Expect(2) = 9e-042
Identities = 47/108 (43%), Positives = 64/108 (59%)
Frame = -2 / +2
Query: 946 TLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDH 767
T M*NC P+ + D H+PALS+++ IAV D GYT +V R T S+RL +FL++G H
Sbjct: 59 TFM*NCCPKYCLAHIPDLMFHIPALSSITKIAVQDWGYTCVVERETASNRL*LFLLAGLH 238
Query: 766 VPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMTLGMTWRGP 623
P IP KK *PST + ++FS F TIS+ N +T + P
Sbjct: 239 CPPSIPATKKE*PSTCHD*IVFSLFWNTISINDLNWPDVTAAWRYAPP 382
Score = 26.3 bits (51), Expect(3) = 2e-084
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / -2
Query: 972 DEYNMPDNALRCG 1010
DEY+ P NAL CG
Sbjct: 39 DEYSAPRNALMCG 1
>gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 5', mRNA sequence
Length = 883
Score = 203 bits (438), Expect(2) = 1e-082
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +3 / +3
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK+YNL D VSR T Q
Sbjct: 315 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 494
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP SWTAI+LTFDNAG+W++RS WER +LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 495 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 674
Query: 1011 KVVGLPLPP 1037
K G P P
Sbjct: 675 KATGRPRLP 701
Score = 124 bits (266), Expect(2) = 1e-082
Identities = 50/78 (64%), Positives = 59/78 (75%)
Frame = +3 / +3
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P WS+NQARS RWNLTASAARPNPQGSYHYG I ITRTIK+ S I+GK RY N
Sbjct: 6 PTEIVWSLNQARSVRWNLTASAARPNPQGSYHYGNITITRTIKLANSAPFINGKQRYAVN 185
Query: 513 GISHRDPETPVKLAEYFN 566
G+S+ TP++LA+Y+N
Sbjct: 186 GVSYVPSTTPLQLADYYN 239
Score = 115 bits (246), Expect(2) = 3e-042
Identities = 59/122 (48%), Positives = 71/122 (58%)
Frame = -2 / -1
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D G+ TL C PR RS D H PALS V
Sbjct: 700 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 521
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
+AVH+ GYT +V R T S RL +FL +G P PT KKA PS ++ ++FS F TIS
Sbjct: 520 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTIS 341
Query: 676 MK 671
K
Sbjct: 340 TK 335
Score = 78.0 bits (164), Expect(2) = 3e-042
Identities = 39/75 (52%), Positives = 46/75 (61%)
Frame = -2 / -1
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SAS GV E P *R LP M E +L+VRVM+++P*W*+PCGLGRAALAV+F
Sbjct: 229 SASCNGVVEGT*ETPFTA*RCLPLMKGAEFASLIVRVMVMFP*W*DPCGLGRAALAVKFH 50
Query: 376 RNDLAWLMDQAQPAG 332
DLA D G
Sbjct: 49 LTDLA*FRDHTISVG 5
>gb|CO160828.1|CO160828 FLD1_24_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_24_F07_A029 5', mRNA sequence
Length = 768
Score = 151 bits (324), Expect(3) = 2e-081
Identities = 56/90 (62%), Positives = 71/90 (78%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 497 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 676
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYY 920
VYP+SWTA++LTFDNAGMW++RS +W R Y
Sbjct: 677 VYPQSWTAVLLTFDNAGMWNLRSEIWARQY 766
Score = 127 bits (271), Expect(3) = 2e-081
Identities = 50/78 (64%), Positives = 60/78 (76%)
Frame = +3 / +2
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P WS+NQARS RWNLTA+AARPNPQGSYHYG I ITRTIK+ S I+GK RY N
Sbjct: 188 PTEIVWSLNQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVN 367
Query: 513 GISHRDPETPVKLAEYFN 566
G+S+ P TP++LA+Y+N
Sbjct: 368 GVSYLRPSTPLQLADYYN 421
Score = 96.8 bits (205), Expect(3) = 7e-044
Identities = 46/88 (52%), Positives = 55/88 (62%)
Frame = -2 / -1
Query: 922 R*YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTP 743
R +R+ DR H+PALS V AVHD GYTW+V R T S RL FL++G H P IPT
Sbjct: 768 RYWRAHISDRRFHIPALSKVKRTAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTT 589
Query: 742 KKA*PSTWRESMLFSGFSKTISMKVRNS 659
KK PS + ++FS F TIS KVR S
Sbjct: 588 KKEYPSKCHDWIVFS*FWNTISTKVRYS 505
Score = 82.6 bits (174), Expect(3) = 7e-044
Identities = 41/75 (54%), Positives = 48/75 (64%)
Frame = -2 / -1
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SAS GV G E P *R LP M E +L+VRVM+++P* *+PCGLGRAALAV+F
Sbjct: 411 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 232
Query: 376 RNDLAWLMDQAQPAG 332
DLAW DQ G
Sbjct: 231 LMDLAWFRDQTISVG 187
Score = 64.8 bits (135), Expect(3) = 2e-081
Identities = 28/56 (50%), Positives = 33/56 (58%)
Frame = +3 / +2
Query: 150 YDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
Y+SLD+HVG SVLV ADQ P DYY+VASTRF S + Y+ S P
Sbjct: 8 YESLDIHVGQSYSVLVTADQPPQDYYLVASTRFTTPEIFISGIFHYSNSQKQVSGP 175
Score = 37.7 bits (76), Expect(3) = 7e-044
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -2 / -1
Query: 265 DLASWMNRVEATM**SPGAWSASTSTERQWPTCTSSESYT 146
+++ + RV+AT **S G SA T TE WPT S +SY+
Sbjct: 123 NISGVVKRVDATK**S*GG*SAVTRTE*DWPT*MSRDSYS 4
>gb|DT631597.1|DT631597 EST1146528 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFA51 3' end, mRNA sequence
Length = 944
Score = 116 bits (248), Expect(4) = 5e-079
Identities = 48/91 (52%), Positives = 63/91 (69%)
Frame = +3 / +1
Query: 36 TYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDADQAP 215
TYR R+ N G++ +LNFR Q H M LVE EGS+TLQ+ Y +LD+HVG SVLV ADQ+P
Sbjct: 10 TYRFRISNVGMQTTLNFRTQNHRMLLVETEGSYTLQEYYATLDIHVGQSYSVLVTADQSP 189
Query: 216 GDYYMVASTRFIHDAKSASAVIRYAGSSGAP 308
+Y+VAS RF + A ++YA S+ AP
Sbjct: 190 ASFYIVASARFTDPVITGIAFLQYANSATAP 282
Score = 116 bits (247), Expect(4) = 5e-079
Identities = 45/81 (55%), Positives = 59/81 (72%)
Frame = +3 / +1
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P + +S+NQARS RWNLTA AARPNPQGS+HYG IN++RTI++ + I GK R+ N
Sbjct: 316 PMDYNYSLNQARSIRWNLTAGAARPNPQGSFHYGNINVSRTIQLQSTAPIIGGKQRFAVN 495
Query: 513 GISHRDPETPVKLAEYFNATD 575
+S P+TP+KLA+YF D
Sbjct: 496 NVSFIYPDTPLKLADYFQIND 558
Score = 80.8 bits (170), Expect(4) = 5e-079
Identities = 36/73 (49%), Positives = 44/73 (60%)
Frame = +3 / +1
Query: 612 PAVNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKT 791
P+V P VI A + FIEI+F+N E +I + HVDGYAFF VGM G W + T
Sbjct: 589 PSVVSPPRYGTPVIDAINKAFIEIIFQNTENAIQTWHVDGYAFFVVGMDSGVWDSTKQST 768
Query: 792 YNLLDTVSRHTIQ 830
YNL D V+R T Q
Sbjct: 769 YNLNDAVARPTTQ 807
Score = 60.2 bits (125), Expect(4) = 3e-030
Identities = 33/71 (46%), Positives = 40/71 (56%)
Frame = -2 / -1
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
K SASF GVSG + + R LP + +V I+P*W EPCGLG AA AV+
Sbjct: 545 K*SASFRGVSG*INDTLFTANRCLPPIIGAVLCN*IVLDTFIFP*WKEPCGLGLAAPAVK 366
Query: 382 FQRNDLAWLMD 350
F DLAWL +
Sbjct: 365 FHLIDLAWLRE 333
Score = 51.9 bits (107), Expect(4) = 3e-030
Identities = 33/72 (45%), Positives = 38/72 (52%)
Frame = -2 / -1
Query: 250 MNRVEATM**SPGAWSASTSTERQWPTCTSSESYTSCRVCEPSSSTSFMSWPWMRKLSDA 71
+ R EATM* G SA TSTE PT SS + SCRV +PS ST + + K S
Sbjct: 224 VKRAEATM*NEAGL*SAVTSTE*DCPT*ISSVA*YSCRVYDPSVSTKSIR*F*VLKFSVV 45
Query: 70 LIPVLHTRRRYV 35
IP L R YV
Sbjct: 44 CIPTLEIRNLYV 9
Score = 47.8 bits (98), Expect(4) = 3e-030
Identities = 28/60 (46%), Positives = 33/60 (55%)
Frame = -2 / -1
Query: 826 IVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMT 647
+V R T S RLYV + H P IPT KKA*PST + + FS F IS+ A MT
Sbjct: 803 VVGRATASFRLYVDCLVLSHTPLSIPTTKKA*PSTCQV*IAFSVF*NIISINALLIASMT 624
Score = 40.5 bits (82), Expect(4) = 5e-079
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3 / +3
Query: 831 VYPRSWTAIMLTFDNAGMWSV 893
VYP SWTA+++ DN GMW++
Sbjct: 807 VYPYSWTAVLMELDNVGMWNL 869
Score = 28.6 bits (56), Expect(4) = 3e-030
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / -2
Query: 886 HMPALSNVSMIAVHDRGYT 830
HMP LS+ AVH+ GYT
Sbjct: 862 HMPTLSSSINTAVHEYGYT 806
>gb|CF663138.1|CF663138 RTCNT1_1_B03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_1_B03_A029 3', mRNA sequence
Length = 765
Score = 193 bits (417), Expect(2) = 1e-076
Identities = 83/150 (55%), Positives = 104/150 (69%)
Frame = +3 / -3
Query: 114 VELEGSHTLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAG 293
VE+EGSHT+Q+VYD+LD+HVG SVL+ A+Q P DYY+VASTRF + A++RY+
Sbjct: 748 VEVEGSHTIQNVYDALDIHVGQSCSVLITANQVPKDYYIVASTRFTTPVLNGVALLRYSN 569
Query: 294 SSGAPPAPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVS 473
S P P WSINQA+S RWNLTA+AARPNPQGSYHYG I +RTI + S
Sbjct: 568 SRQPASGPLPPGPTIQIDWSINQAKSIRWNLTANAARPNPQGSYHYGLIKPSRTIILANS 389
Query: 474 RGHIDGKLRYGFNGISHRDPETPVKLAEYF 563
I+GK RY NG+S +TP+KLA+YF
Sbjct: 388 APIINGKQRYAVNGVSFLPLDTPLKLADYF 299
Score = 114 bits (243), Expect(2) = 1e-076
Identities = 45/72 (62%), Positives = 55/72 (76%)
Frame = +3 / -3
Query: 648 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTI 827
V + +FR+FIEIVF+N E +I S HVDGY+FF GM G WSP RK+YNL D VSR T
Sbjct: 223 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 44
Query: 828 QVYPRSWTAIML 863
QVYP+SWTAI++
Sbjct: 43 QVYPQSWTAILV 8
Score = 107 bits (229), Expect(2) = 6e-037
Identities = 69/154 (44%), Positives = 81/154 (52%)
Frame = -2 / +3
Query: 565 LKYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAV 386
LK SASF GVS E P R P M E ++V + P* *EPCGLGRAALAV
Sbjct: 297 LK*SASFRGVSRGKKETPFTAYRCFPLMMGAELARMIVLEGFMRP***EPCGLGRAALAV 476
Query: 385 RFQRNDLAWLMDQAQPAGGSVMFGAGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAW 206
+F D AWL+DQ+ G G LE *R A + RV+ATM**S G W
Sbjct: 477 KFHLMDFAWLIDQSI*IVGPGGRGPEAGCLELL*RRRATPFNTGVVKRVDATM**SLGTW 656
Query: 205 SASTSTERQWPTCTSSESYTSCRVCEPSSSTSFM 104
A STE+ PT S S T V +PS+ST +
Sbjct: 657 FAVMSTEQD*PTWISRAS*TF*IVWDPSTSTEVL 758
Score = 68.0 bits (142), Expect(2) = 6e-037
Identities = 35/82 (42%), Positives = 49/82 (59%)
Frame = -2 / +3
Query: 868 NVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFS 689
+++ IAV D GYT +V R T S+RL +FL++G H P IP KK *PST + ++FS F
Sbjct: 3 SITKIAVQDWGYTCVVERETASNRL*LFLLAGLHCPPSIPATKKE*PSTCHD*IVFSLFW 182
Query: 688 KTISMKVRNSAVMTLGMTWRGP 623
TIS+ N +T + P
Sbjct: 183 NTISINDLNWPDVTAAWRYAPP 248
>gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 5', mRNA sequence
Length = 804
Score = 153 bits (329), Expect(4) = 2e-075
Identities = 62/113 (54%), Positives = 78/113 (69%)
Frame = +3 / +3
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G W+ K YNL
Sbjct: 462 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 641
Query: 801 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPA 959
DTVSR T QVYP SWTAI + DN G W++RS W R YLG+QFY+ V SPA
Sbjct: 642 FDTVSRCTTQVYPNSWTAIRVPLDNVGKWNLRSENWARQYLGQQFYLRVYSPA 800
Score = 94.1 bits (199), Expect(3) = 2e-033
Identities = 49/104 (47%), Positives = 62/104 (59%)
Frame = -2 / -3
Query: 958 AGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLI 779
AGE T *NC PR R+Q DR H P LS + IAVH+ G T +V R TVS++LY F++
Sbjct: 799 AGE*TRR*NCCPRY*RAQFSDRKFHFPTLSRGTRIAVHELG*TCVVQRETVSNKLYSFML 620
Query: 778 SGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMT 647
+ H P IP K *PS + ++ S F KTISMK S +T
Sbjct: 619 ASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPIT 488
Score = 86.8 bits (183), Expect(4) = 2e-075
Identities = 35/54 (64%), Positives = 40/54 (74%)
Frame = +3 / +2
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGK 494
P G WS+NQARS RWNLTAS RPNPQGSYHYG IN +RTI + S I+G+
Sbjct: 182 PTGIDWSLNQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGE 343
Score = 65.7 bits (137), Expect(4) = 2e-075
Identities = 29/56 (51%), Positives = 35/56 (62%)
Frame = +3 / +2
Query: 150 YDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
YDSLDVH+G SVLV ADQ P YY+VASTRF + A +RY+ S + P
Sbjct: 2 YDSLDVHLGQSYSVLVTADQPPQAYYIVASTRFTTPILTGIAFLRYSNSQTSASGP 169
Score = 56.1 bits (116), Expect(3) = 2e-033
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = -2 / -1
Query: 490 PSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQRNDLAWLMDQAQPAG 332
P + E +++VR + I P*W*+P G GR LAVRF D AW DQ+ P G
Sbjct: 339 PLITGAELASIIVREVFIIP*W*DP*GFGRGPLAVRFHLMDRAWFNDQSIPVG 181
Score = 37.7 bits (76), Expect(3) = 2e-033
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = -2 / -1
Query: 250 MNRVEATM**SPGAWSASTSTERQWPTCTSSESY 149
+NRV+ATM**+ G SA TSTE P TS ESY
Sbjct: 102 VNRVDATM**A*GG*SAVTSTE*D*PK*TSRESY 1
Score = 35.4 bits (71), Expect(4) = 2e-075
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 492 KLRYGFNGISHRDPETPVKLAEY 560
K RY N IS+ P+TP+KLA+Y
Sbjct: 342 KQRYAVNSISYIQPDTPLKLADY 410
>gb|DR054782.1|DR054782 RTCA1_19_C02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 5', mRNA sequence
Length = 717
Score = 158 bits (339), Expect(3) = 3e-073
Identities = 60/97 (61%), Positives = 74/97 (76%)
Frame = +3 / +3
Query: 648 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTI 827
V+ E+R F+EIVF+N E +I S H+DGY+FF VGM GTW+P R YNL D VSR T
Sbjct: 426 VLNVEYRNFVEIVFQNNENTIQSWHLDGYSFFVVGMENGTWTPASRNGYNLFDAVSRCTT 605
Query: 828 QVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFY 938
QVYP+SWTAI+LTFDNAGMW++RS W R +LG+Q Y
Sbjct: 606 QVYPQSWTAILLTFDNAGMWNLRSETWPRQFLGQQTY 716
Score = 125 bits (267), Expect(3) = 3e-073
Identities = 50/80 (62%), Positives = 61/80 (76%)
Frame = +3 / +3
Query: 327 EPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYG 506
E P WS+NQARS RWNLTASAARPNPQGSYHYG++NITRTI + S I+G+ RY
Sbjct: 105 EGPTEIDWSVNQARSIRWNLTASAARPNPQGSYHYGKVNITRTIILANSAPIINGRQRYA 284
Query: 507 FNGISHRDPETPVKLAEYFN 566
NG+S P TP++LA+Y+N
Sbjct: 285 VNGVSFVRPSTPMQLADYYN 344
Score = 109 bits (232), Expect(2) = 6e-044
Identities = 51/95 (53%), Positives = 59/95 (62%)
Frame = -2 / -3
Query: 931 CSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPI 752
C PR +R D H+PALS V IAVHD GYTW+V R T S RLY FL++G HVP I
Sbjct: 709 C*PRNWRGHVSDLRFHIPALSKVKRIAVHDCGYTWVVQRETASKRLYPFLLAGVHVPFSI 530
Query: 751 PTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMT 647
PT KK PS + M+FS F TIS K+R S T
Sbjct: 529 PTTKKEYPSKCHD*MVFSLF*NTISTKLRYSTFST 425
Score = 90.0 bits (190), Expect(2) = 6e-044
Identities = 43/77 (55%), Positives = 49/77 (63%)
Frame = -2 / -3
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SAS GV G E P *R LP M E +++VRVML P*W*+PCGLGRAALAV+F
Sbjct: 334 SASCIGVLGRTKETPFTA*RCLPLMMGAEFASIIVRVMLTLP*W*DPCGLGRAALAVKFH 155
Query: 376 RNDLAWLMDQAQPAGGS 326
DLAW DQ+ G S
Sbjct: 154 LMDLAWFTDQSISVGPS 104
Score = 32.7 bits (65), Expect(3) = 3e-073
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3 / +3
Query: 222 YYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
YYMV STRFI S S + Y+ S P
Sbjct: 3 YYMVVSTRFITPVISTSGIFHYSNSQKQVSGP 98
>gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 3', mRNA sequence
Length = 805
Score = 203 bits (438), Expect(2) = 1e-072
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +3 / +3
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK+YNL D VSR T Q
Sbjct: 255 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 434
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP SWTAI+LTFDNAG+W++RS WER +LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 435 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 614
Query: 1011 KVVGLPLPP 1037
K G P P
Sbjct: 615 KATGRPRLP 641
Score = 115 bits (246), Expect(2) = 1e-038
Identities = 59/122 (48%), Positives = 71/122 (58%)
Frame = -2 / -1
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D G+ TL C PR RS D H PALS V
Sbjct: 640 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 461
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
+AVH+ GYT +V R T S RL +FL +G P PT KKA PS ++ ++FS F TIS
Sbjct: 460 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTIS 281
Query: 676 MK 671
K
Sbjct: 280 TK 275
Score = 91.3 bits (193), Expect(2) = 1e-072
Identities = 37/59 (62%), Positives = 45/59 (76%)
Frame = +3 / +3
Query: 390 ASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYFN 566
ASAARPNPQGSYHYG I ITRTIK+ S I+GK RY NG+S+ TP++LA+Y+N
Sbjct: 3 ASAARPNPQGSYHYGNITITRTIKLANSAPFINGKQRYAVNGVSYVPSTTPLQLADYYN 179
Score = 65.7 bits (137), Expect(2) = 1e-038
Identities = 32/56 (57%), Positives = 38/56 (67%)
Frame = -2 / -1
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALA 389
SAS GV E P *R LP M E +L+VRVM+++P*W*+PCGLGRAALA
Sbjct: 169 SASCNGVVEGT*ETPFTA*RCLPLMKGAEFASLIVRVMVMFP*W*DPCGLGRAALA 2
>gb|DR683393.1|DR683393 EST1073469 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG65 3' end, mRNA sequence
Length = 790
Score = 116 bits (248), Expect(3) = 2e-071
Identities = 48/91 (52%), Positives = 63/91 (69%)
Frame = +3 / +2
Query: 36 TYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDADQAP 215
TYR R+ N G++ +LNFR Q H M LVE EGS+TLQ+ Y +LD+HVG SVLV ADQ+P
Sbjct: 2 TYRFRISNVGMQTTLNFRTQNHRMLLVETEGSYTLQEYYATLDIHVGQSYSVLVTADQSP 181
Query: 216 GDYYMVASTRFIHDAKSASAVIRYAGSSGAP 308
+Y+VAS RF + A ++YA S+ AP
Sbjct: 182 ASFYIVASARFTDPVITGIAFLQYANSATAP 274
Score = 116 bits (247), Expect(3) = 2e-071
Identities = 45/81 (55%), Positives = 59/81 (72%)
Frame = +3 / +2
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P + +S+NQARS RWNLTA AARPNPQGS+HYG IN++RTI++ + I GK R+ N
Sbjct: 308 PMDYNYSLNQARSIRWNLTAGAARPNPQGSFHYGNINVSRTIQLQSTAPIIGGKQRFAVN 487
Query: 513 GISHRDPETPVKLAEYFNATD 575
+S P+TP+KLA+YF D
Sbjct: 488 NVSFIYPDTPLKLADYFQIND 550
Score = 77.6 bits (163), Expect(3) = 2e-071
Identities = 34/69 (49%), Positives = 42/69 (60%)
Frame = +3 / +2
Query: 612 PAVNGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKT 791
P+V P VI A + FIEI+F+N E +I + HVDGYAFF VGM G W + T
Sbjct: 581 PSVVSPPRYGTPVIDAINKAFIEIIFQNTENAIQTWHVDGYAFFVVGMDSGVWDSTKQST 760
Query: 792 YNLLDTVSR 818
YNL D V+R
Sbjct: 761 YNLNDAVAR 787
Score = 60.2 bits (125), Expect(3) = 2e-026
Identities = 33/71 (46%), Positives = 40/71 (56%)
Frame = -2 / -2
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
K SASF GVSG + + R LP + +V I+P*W EPCGLG AA AV+
Sbjct: 537 K*SASFRGVSG*INDTLFTANRCLPPIIGAVLCN*IVLDTFIFP*WKEPCGLGLAAPAVK 358
Query: 382 FQRNDLAWLMD 350
F DLAWL +
Sbjct: 357 FHLIDLAWLRE 325
Score = 51.9 bits (107), Expect(3) = 2e-026
Identities = 33/72 (45%), Positives = 38/72 (52%)
Frame = -2 / -2
Query: 250 MNRVEATM**SPGAWSASTSTERQWPTCTSSESYTSCRVCEPSSSTSFMSWPWMRKLSDA 71
+ R EATM* G SA TSTE PT SS + SCRV +PS ST + + K S
Sbjct: 216 VKRAEATM*NEAGL*SAVTSTE*DCPT*ISSVA*YSCRVYDPSVSTKSIR*F*VLKFSVV 37
Query: 70 LIPVLHTRRRYV 35
IP L R YV
Sbjct: 36 CIPTLEIRNLYV 1
Score = 46.0 bits (94), Expect(3) = 2e-026
Identities = 27/57 (47%), Positives = 31/57 (54%)
Frame = -2 / -2
Query: 817 RLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMT 647
R T S RLYV + H P IPT KKA*PST + + FS F IS+ A MT
Sbjct: 786 RATASFRLYVDCLVLSHTPLSIPTTKKA*PSTCQV*IAFSVF*NIISINALLIASMT 616
>gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_22_E05_A032 5', mRNA sequence
Length = 669
Score = 187 bits (403), Expect(2) = 2e-071
Identities = 74/131 (56%), Positives = 95/131 (72%)
Frame = +3 / +3
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G W+ K YNL
Sbjct: 267 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 446
Query: 801 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEY 980
DTVSR T QVYP SWTAI + DN GMW++RS W R YLG+QFY+ V SPA S RDEY
Sbjct: 447 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 626
Query: 981 NMPDNALRCGK 1013
++P+NAL+CG+
Sbjct: 627 SIPNNALKCGR 659
Score = 109 bits (233), Expect(2) = 3e-033
Identities = 57/121 (47%), Positives = 74/121 (61%)
Frame = -2 / -3
Query: 1009 PQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYT 830
P RAL G+ YSS ++ AGE T *NC PR R+Q DR H+P LS + IAVH+ G T
Sbjct: 655 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 476
Query: 829 WIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 650
+V R TVS++LY F+++ H P IP K *PS + ++ S F KTISMK S +
Sbjct: 475 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 296
Query: 649 T 647
T
Sbjct: 295 T 293
Score = 103 bits (219), Expect(2) = 2e-071
Identities = 42/69 (60%), Positives = 50/69 (72%)
Frame = +3 / +3
Query: 354 INQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDP 533
+ ARS RWNLTAS RPNPQGSYHYG IN +RTI + S I+GK RY N IS+ P
Sbjct: 9 VEPARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQP 188
Query: 534 ETPVKLAEY 560
+TP+KLA+Y
Sbjct: 189 DTPLKLADY 215
Score = 53.8 bits (111), Expect(2) = 3e-033
Identities = 29/67 (43%), Positives = 38/67 (56%)
Frame = -2 / -3
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
K SA+F GVSG + E+ P + E +++VR + I P*W*+P G GR LAVR
Sbjct: 217 K*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*GFGRGPLAVR 38
Query: 382 FQRNDLA 362
F D A
Sbjct: 37 FHLMDRA 17
>gb|BQ198615.1|BQ198615 NXLV133_F09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV133_F09 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 690
Score = 174 bits (375), Expect(3) = 2e-067
Identities = 69/120 (57%), Positives = 87/120 (72%)
Frame = +3 / +3
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P K YNL D VSR T Q
Sbjct: 330 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASXKYYNLFDAVSRCTTQ 509
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
V P+SWTA++LTFDNAGMW++RS +W R YLG+Q YI V + RS DEY+ P AL G
Sbjct: 510 VXPQSWTAVLLTFDNAGMWNLRSEIWXRQYLGQQTYIXVKTLVRSXXDEYDXPHXALLXG 689
Score = 108 bits (230), Expect(3) = 1e-035
Identities = 56/117 (47%), Positives = 64/117 (54%)
Frame = -2 / -3
Query: 1009 PQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYT 830
P RRA G YSS D T M C PR +R DR H+PALS V AVHD G T
Sbjct: 688 PXRRAX*GXSYSSXXDLTRVFTXMYVC*PRYWRXHISDRRFHIPALSKVKRTAVHDCGXT 509
Query: 829 WIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 659
W+V R T S RL ++G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 508 WVVQRETASKRL*YXXLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 338
Score = 70.7 bits (148), Expect(3) = 2e-067
Identities = 28/51 (54%), Positives = 37/51 (72%)
Frame = +3 / +3
Query: 414 QGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYFN 566
+ SYHYG I ITRTIK+ S I+GK RY NG+S+ P TP++LA+Y+N
Sbjct: 102 RXSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLRPSTPLQLADYYN 254
Score = 51.0 bits (105), Expect(3) = 2e-067
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3 / +1
Query: 348 WSINQARSFRWNLTASAARPNPQG 419
WS+NQA WNLTA+AARPNPQG
Sbjct: 34 WSLNQAXXIXWNLTANAARPNPQG 105
Score = 43.2 bits (88), Expect(3) = 1e-035
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = -2 / -2
Query: 418 PCGLGRAALAVRFQRNDLAWLMDQ 347
PCGLGRAALAV+F LAW DQ
Sbjct: 104 PCGLGRAALAVKFXLMXLAWFRDQ 33
Score = 38.2 bits (77), Expect(3) = 1e-035
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = -2 / -3
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP* 428
SAS GV G E P *R LP M E +L+VRVM+++P*
Sbjct: 244 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP* 116
>gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_A07_A029 3', mRNA sequence
Length = 875
Score = 203 bits (438), Expect(2) = 6e-067
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +3 / +3
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK+YNL D VSR T Q
Sbjct: 234 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 413
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP SWTAI+LTFDNAG+W++RS WER +LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 414 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 593
Query: 1011 KVVGLPLPP 1037
K G P P
Sbjct: 594 KATGRPRLP 620
Score = 115 bits (246), Expect(2) = 3e-034
Identities = 59/122 (48%), Positives = 71/122 (58%)
Frame = -2 / -2
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D G+ TL C PR RS D H PALS V
Sbjct: 619 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 440
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
+AVH+ GYT +V R T S RL +FL +G P PT KKA PS ++ ++FS F TIS
Sbjct: 439 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTIS 260
Query: 676 MK 671
K
Sbjct: 259 TK 254
Score = 72.5 bits (152), Expect(2) = 6e-067
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = +3 / +3
Query: 411 PQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYFN 566
PQGSYHYG I ITRT K+ S I+GK RY NG+S+ TP++LA+Y+N
Sbjct: 3 PQGSYHYGNITITRTNKLANSAPFINGKQRYAVNGVSYVPSTTPLQLADYYN 158
Score = 51.0 bits (105), Expect(2) = 3e-034
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = -2 / -2
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCG 410
SAS GV E P *R LP M E +L VRVM+++P*W*+PCG
Sbjct: 148 SASCNGVVEGT*ETPFTA*RCLPLMKGAEFASLFVRVMVMFP*W*DPCG 2
>gb|CO158404.1|CO158404 FLD1_6_E04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_6_E04_A029 5', mRNA sequence
Length = 750
Score = 118 bits (253), Expect(3) = 1e-066
Identities = 48/76 (63%), Positives = 56/76 (73%)
Frame = +3 / +3
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P G WS+NQARS RWNLTAS RPNPQGSYHYG IN +RTI + S I+GK RY N
Sbjct: 222 PTGIDWSLNQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVN 401
Query: 513 GISHRDPETPVKLAEY 560
IS+ P+TP+KLA+Y
Sbjct: 402 SISYIQPDTPLKLADY 449
Score = 102 bits (217), Expect(3) = 1e-066
Identities = 43/79 (54%), Positives = 54/79 (68%)
Frame = +3 / +3
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF + M G W+ K YNL
Sbjct: 501 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLXMDGGQWTEASMKEYNL 680
Query: 801 LDTVSRHTIQVYPRSWTAI 857
DTVSR T QVYP SWTAI
Sbjct: 681 FDTVSRCTTQVYPNSWTAI 737
Score = 72.5 bits (152), Expect(3) = 1e-066
Identities = 31/61 (50%), Positives = 40/61 (65%)
Frame = +3 / +3
Query: 135 TLQDVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPA 314
T+Q++YDSLDVH+G SVLV ADQ P YY+VASTRF + A +RY+ S +
Sbjct: 27 TVQNIYDSLDVHLGQSYSVLVTADQPPQAYYIVASTRFTTPILTGIAFLRYSNSQTSASG 206
Query: 315 P 317
P
Sbjct: 207 P 209
Score = 68.0 bits (142), Expect(3) = 3e-028
Identities = 34/77 (44%), Positives = 44/77 (57%)
Frame = -2 / -3
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
K SA+F GVSG + E+ P + E +++VR + I P*W*+P G GR LAVR
Sbjct: 451 K*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*GFGRGPLAVR 272
Query: 382 FQRNDLAWLMDQAQPAG 332
F D AW DQ+ P G
Sbjct: 271 FHLMDRAWFNDQSIPVG 221
Score = 58.3 bits (121), Expect(3) = 3e-028
Identities = 31/70 (44%), Positives = 42/70 (60%)
Frame = -2 / -3
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
IAVH+ G T +V R TVS++LY F+++ H P I K *PS + ++ S F KTIS
Sbjct: 736 IAVHELG*TCVVQRETVSNKLYSFMLASVHWPPSIXRTKNE*PSRCHDWIVSSLFWKTIS 557
Query: 676 MKVRNSAVMT 647
MK S +T
Sbjct: 556 MKALKSEPIT 527
Score = 37.7 bits (76), Expect(3) = 3e-028
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = -2 / -3
Query: 250 MNRVEATM**SPGAWSASTSTERQWPTCTSSESY 149
+NRV+ATM**+ G SA TSTE P TS ESY
Sbjct: 142 VNRVDATM**A*GG*SAVTSTE*D*PK*TSRESY 41
>gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 3', mRNA sequence
Length = 751
Score = 204 bits (440), Expect(2) = 2e-065
Identities = 80/130 (61%), Positives = 97/130 (74%)
Frame = +3 / +2
Query: 648 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTI 827
V+ E+R F+EIVF+N E +I S H+DGY+FF VGM GTW+P R YNL D VSR T
Sbjct: 230 VLNVEYRNFVEIVFQNNENTIQSWHLDGYSFFVVGMENGTWTPASRNGYNLFDAVSRCTT 409
Query: 828 QVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRC 1007
QVYP+SWTAI+LTFDNAGMW++RS W R +LG+Q Y+ V SP RSLRDE+N+P NAL C
Sbjct: 410 QVYPQSWTAILLTFDNAGMWNLRSETWPRQFLGQQTYVRVRSPVRSLRDEFNIPHNALLC 589
Query: 1008 GKVVGLPLPP 1037
GK G P P
Sbjct: 590 GKARGRPRLP 619
Score = 146 bits (313), Expect(2) = 3e-041
Identities = 70/130 (53%), Positives = 81/130 (62%)
Frame = -2 / -2
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+L SS SDR G++TL C PR +R D H+PALS V
Sbjct: 618 GRRGRPLAFPQRRAL*GILNSSLSDRTGDLTLTYVC*PRNWRGHVSDLRFHIPALSKVKR 439
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
IAVHD GYTW+V R T S RLY FL++G HVP IPT KK PS + M+FS F TIS
Sbjct: 438 IAVHDCGYTWVVQRETASKRLYPFLLAGVHVPFSIPTTKKEYPSKCHD*MVFSLF*NTIS 259
Query: 676 MKVRNSAVMT 647
K+R S T
Sbjct: 258 TKLRYSTFST 229
Score = 66.6 bits (139), Expect(2) = 2e-065
Identities = 26/49 (53%), Positives = 36/49 (73%)
Frame = +3 / +2
Query: 420 SYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYFN 566
SYHYG++NITRTI + S I+G+ RY NG+S P TP++LA+Y+N
Sbjct: 2 SYHYGKVNITRTIILANSAPIINGRQRYAVNGVSFVRPSTPMQLADYYN 148
Score = 43.7 bits (89), Expect(2) = 3e-041
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = -2 / -2
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*E 419
SAS GV G E P *R LP M E +++VRVML P*W*+
Sbjct: 138 SASCIGVLGRTKETPFTA*RCLPLMMGAEFASIIVRVMLTLP*W*D 1
>gb|DR120585.1|DR120585 RTMG1_30_E02.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_E02_A029 5', mRNA sequence
Length = 714
Score = 123 bits (264), Expect(3) = 6e-065
Identities = 50/92 (54%), Positives = 64/92 (69%)
Frame = +3 / +3
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G W+ K YNL
Sbjct: 438 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 617
Query: 801 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVR 896
DTVSR T QVYP SWTAI + DN GMW++R
Sbjct: 618 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLR 713
Score = 118 bits (253), Expect(3) = 6e-065
Identities = 48/76 (63%), Positives = 56/76 (73%)
Frame = +3 / +3
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P G WS+NQARS RWNLTAS RPNPQGSYHYG IN +RTI + S I+GK RY N
Sbjct: 159 PTGIDWSLNQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVN 338
Query: 513 GISHRDPETPVKLAEY 560
IS+ P+TP+KLA+Y
Sbjct: 339 SISYIQPDTPLKLADY 386
Score = 73.9 bits (155), Expect(3) = 2e-030
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = -2 / -3
Query: 895 RTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWR 716
R H+P LS + IAVH+ G T +V R TVS++LY F+++ H P IP K *PS
Sbjct: 712 RKFHIPTLSRGTRIAVHELG*TCVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCH 533
Query: 715 ESMLFSGFSKTISMKVRNSAVMT 647
+ ++ S F KTISMK S +T
Sbjct: 532 DWIVSSLFWKTISMKALKSEPIT 464
Score = 68.0 bits (142), Expect(3) = 2e-030
Identities = 34/77 (44%), Positives = 44/77 (57%)
Frame = -2 / -3
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
K SA+F GVSG + E+ P + E +++VR + I P*W*+P G GR LAVR
Sbjct: 388 K*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*GFGRGPLAVR 209
Query: 382 FQRNDLAWLMDQAQPAG 332
F D AW DQ+ P G
Sbjct: 208 FHLMDRAWFNDQSIPVG 158
Score = 45.5 bits (93), Expect(3) = 6e-065
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = +3 / +3
Query: 174 GHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYAGS 296
G SVLV ADQ P YY+VASTRF + A +RY+ S
Sbjct: 3 GSSYSVLVTADQPPQAYYIVASTRFTSPILTGIAFLRYSNS 125
Score = 29.5 bits (58), Expect(3) = 2e-030
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -2 / -3
Query: 250 MNRVEATM**SPGAWSASTSTE 185
+NRV+ATM**+ G SA TSTE
Sbjct: 79 VNRVDATM**A*GG*SAVTSTE 14
>gb|DR019423.1|DR019423 STRS1_29_H11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_H11_A034 5', mRNA sequence
Length = 703
Score = 131 bits (280), Expect(3) = 1e-064
Identities = 53/98 (54%), Positives = 67/98 (68%)
Frame = +3 / +1
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G W+ K YNL
Sbjct: 409 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 588
Query: 801 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWER 914
DTVSR T QVYP SWTAI + DN GMW++RS W R
Sbjct: 589 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWAR 702
Score = 117 bits (250), Expect(3) = 1e-064
Identities = 48/76 (63%), Positives = 55/76 (72%)
Frame = +3 / +1
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P G WS+NQARS RWNLTAS RPNPQGSYHYG IN +RTI + S I+GK RY N
Sbjct: 130 PTGIDWSLNQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVN 309
Query: 513 GISHRDPETPVKLAEY 560
IS P+TP+KLA+Y
Sbjct: 310 SISFIQPDTPLKLADY 357
Score = 76.2 bits (160), Expect(2) = 1e-027
Identities = 39/89 (43%), Positives = 53/89 (59%)
Frame = -2 / -3
Query: 913 RSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA 734
R+Q DR H+P LS + IAV + G T +V R TVS++LY F+++ H P IP K
Sbjct: 701 RAQFSDRKFHIPTLSRGTRIAVQELG*TCVVQRETVSNKLYSFMLASVHWPPSIPRTKNE 522
Query: 733 *PSTWRESMLFSGFSKTISMKVRNSAVMT 647
*PS + ++ S F KTISMK S +T
Sbjct: 521 *PSRCHDWIVSSLFWKTISMKALKSEPIT 435
Score = 68.4 bits (143), Expect(2) = 1e-027
Identities = 34/77 (44%), Positives = 44/77 (57%)
Frame = -2 / -3
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
K SA+F GVSG + E+ P + E +++VR + I P*W*+P G GR LAVR
Sbjct: 359 K*SANFKGVSGCIKEILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*GFGRGPLAVR 180
Query: 382 FQRNDLAWLMDQAQPAG 332
F D AW DQ+ P G
Sbjct: 179 FHLMDRAWFNDQSIPVG 129
Score = 38.6 bits (78), Expect(3) = 1e-064
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3 / +1
Query: 201 ADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
ADQ P YY+VASTRF + A +RY+ S + P
Sbjct: 1 ADQPPQAYYIVASTRFTTPILTGIAFLRYSNSQTSASGP 117
>gb|BQ696747.1|BQ696747 NXPV_044_G07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_044_G07 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 582
Score = 143 bits (306), Expect(2) = 2e-063
Identities = 53/86 (61%), Positives = 68/86 (79%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 293 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 472
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVW 908
VYP+SWTA++LTFDNA MW++RS +W
Sbjct: 473 VYPQSWTAVLLTFDNAXMWNLRSXIW 550
Score = 121 bits (258), Expect(2) = 2e-063
Identities = 48/72 (66%), Positives = 58/72 (80%)
Frame = +3 / +2
Query: 351 SINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRD 530
S+NQARS RWNLTA+AARPNPQGSYHYG I ITRTIK+ S I+GK RY NG+S+
Sbjct: 2 SLNQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLR 181
Query: 531 PETPVKLAEYFN 566
P TP++LA+Y+N
Sbjct: 182 PSTPLQLADYYN 217
Score = 89.0 bits (188), Expect(2) = 9e-035
Identities = 43/80 (53%), Positives = 49/80 (61%)
Frame = -2 / -1
Query: 898 DRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTW 719
DR H ALS V AVHD GYTW+V R T S RL FL++G H P IPT KK PS
Sbjct: 540 DRRFHXXALSKVKRTAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKC 361
Query: 718 RESMLFSGFSKTISMKVRNS 659
+ ++FS F TIS KVR S
Sbjct: 360 HDWIVFS*FWNTISTKVRYS 301
Score = 79.4 bits (167), Expect(2) = 9e-035
Identities = 39/69 (56%), Positives = 46/69 (66%)
Frame = -2 / -1
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SAS GV G E P *R LP M E +L+VRVM+++P* *+PCGLGRAALAV+F
Sbjct: 207 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 28
Query: 376 RNDLAWLMD 350
DLAW D
Sbjct: 27 LMDLAWFRD 1
>gb|CO197261.1|CO197261 GEO1_5_A12.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_5_A12_A029 3', mRNA sequence
Length = 730
Score = 243 bits (524), Expect = 3e-063
Identities = 102/180 (56%), Positives = 128/180 (71%)
Frame = +3 / -1
Query: 24 EAGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDA 203
+ GKTY+LR+ N G+ +LNFRIQGH MKLVE+EGSHT+Q+VYD+LD+HVG SVL+ A
Sbjct: 631 DPGKTYKLRISNVGLSTTLNFRIQGHKMKLVEVEGSHTIQNVYDALDIHVGQSCSVLITA 452
Query: 204 DQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAPNMTEPPAGWAWSINQARSFRWN 383
+Q P DYY+VASTRF + A++RY+ S P P WSINQA+S RWN
Sbjct: 451 NQVPKDYYIVASTRFTTPVLNGVALLRYSNSRQPASGPLPPGPTIQIDWSINQAKSIRWN 272
Query: 384 LTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYF 563
LTA+AARPNPQGSYHYG I +RTI + S I+GK RY NG+S +TP+KLA+YF
Sbjct: 271 LTANAARPNPQGSYHYGLIKPSRTIILANSAPIINGK*RYAVNGVSFLPLDTPLKLADYF 92
Score = 132 bits (282), Expect = 8e-030
Identities = 80/185 (43%), Positives = 97/185 (52%)
Frame = -2 / +3
Query: 565 LKYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAV 386
LK SASF GVS E P R P M E ++V + P* *EPCGLGRAALAV
Sbjct: 90 LK*SASFRGVSRGKKETPFTAYRYFPLMMGAELARMIVLEGFMRP***EPCGLGRAALAV 269
Query: 385 RFQRNDLAWLMDQAQPAGGSVMFGAGGAPLEPA*RMTAEADLASWMNRVEATM**SPGAW 206
+F D AWL+DQ+ G G LE *R A + RV+ATM**S G W
Sbjct: 270 KFHLMDFAWLIDQSI*IVGPGGRGPEAGCLELL*RRRATPFNTGVVKRVDATM**SLGTW 449
Query: 205 SASTSTERQWPTCTSSESYTSCRVCEPSSSTSFMSWPWMRKLSDALIPVLHTRRRYVLPA 26
A STE+ PT S S T V +PS+STSF+ WPW+ K + P R V P
Sbjct: 450 FAVMSTEQD*PTWISRAS*TF*IVWDPSTSTSFILWPWILKFNVVDSPTFEIRSL*VFPG 629
Query: 25 SKVSM 11
S +++
Sbjct: 630 STLNV 644
>gb|BM428215.1|BM428215 NXRV_013_H12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_013_H12 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 626
Score = 134 bits (287), Expect(2) = 1e-062
Identities = 53/99 (53%), Positives = 66/99 (66%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIV N E +I S H+DGY+FF VGM G W+P K YNL D VSR T Q
Sbjct: 323 LSVEYRTFVEIVXXNYENTIQSWHLDGYSFFVVGMDGGEWTPASXKYYNLFDAVSRXTTQ 502
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISV 947
VYP S T ++LT DNAGMW++RS +W R Y Y V
Sbjct: 503 VYPXSXTXVLLTXDNAGMWNLRSXIWARQYXXXXTYXKV 619
Score = 127 bits (271), Expect(2) = 1e-062
Identities = 50/78 (64%), Positives = 60/78 (76%)
Frame = +3 / +2
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P WS+NQARS RWNLTA+AARPNPQGSYHYG I ITRTIK+ S I+GK RY N
Sbjct: 14 PTEIVWSLNQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVN 193
Query: 513 GISHRDPETPVKLAEYFN 566
G+S+ P TP++LA+Y+N
Sbjct: 194 GVSYLRPSTPLQLADYYN 247
Score = 87.7 bits (185), Expect(2) = 2e-035
Identities = 41/86 (47%), Positives = 50/86 (58%)
Frame = -2 / -3
Query: 916 YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKK 737
+R+ DR H+PALS V VH GYTW+V R T S RL ++G H P IPT KK
Sbjct: 588 WRAHIXDRRFHIPALSXVKRTXVHXCGYTWVVXRETASKRL*YXXLAGVHSPPSIPTTKK 409
Query: 736 A*PSTWRESMLFSGFSKTISMKVRNS 659
PS + ++FS F TIS KVR S
Sbjct: 408 EYPSKCHDWIVFS*FXNTISTKVRYS 331
Score = 82.6 bits (174), Expect(2) = 2e-035
Identities = 41/75 (54%), Positives = 48/75 (64%)
Frame = -2 / -3
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SAS GV G E P *R LP M E +L+VRVM+++P* *+PCGLGRAALAV+F
Sbjct: 237 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 58
Query: 376 RNDLAWLMDQAQPAG 332
DLAW DQ G
Sbjct: 57 LMDLAWFRDQTISVG 13
>gb|BQ697562.1|BQ697562 NXPV_058_A01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_058_A01 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 602
Score = 139 bits (299), Expect(2) = 2e-062
Identities = 55/99 (55%), Positives = 70/99 (70%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+ GY+FF VGM W+P K YNL D VSR T Q
Sbjct: 293 LSVEYRTFVEIVFQNYENTIQSWHLXGYSFFVVGMDGXEWTPAXXKYYNLFDAVSRCTTQ 472
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISV 947
YP+SWTA++LTFDNA MW++RS + R YL Q YI V
Sbjct: 473 XYPQSWTAVLLTFDNAXMWNLRSEIXARQYLXXQTYIKV 589
Score = 121 bits (258), Expect(2) = 2e-062
Identities = 48/72 (66%), Positives = 58/72 (80%)
Frame = +3 / +2
Query: 351 SINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRD 530
S+NQARS RWNLTA+AARPNPQGSYHYG I ITRTIK+ S I+GK RY NG+S+
Sbjct: 2 SLNQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLR 181
Query: 531 PETPVKLAEYFN 566
P TP++LA+Y+N
Sbjct: 182 PNTPLQLADYYN 217
Score = 82.2 bits (173), Expect(2) = 1e-032
Identities = 44/96 (45%), Positives = 52/96 (54%)
Frame = -2 / -3
Query: 946 TLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDH 767
TLM R +R+ DR H ALS V AVHD GY W+V R T S RL F ++G H
Sbjct: 588 TLMYVXXXRYWRAXISDRRFHXXALSKVKRTAVHDCGYXWVVQRETASKRL*YFXLAGVH 409
Query: 766 VPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 659
IPT KK P + ++FS F TIS KVR S
Sbjct: 408 SXPSIPTTKKEYPXKCHDWIVFS*FWNTISTKVRYS 301
Score = 79.4 bits (167), Expect(2) = 1e-032
Identities = 39/69 (56%), Positives = 46/69 (66%)
Frame = -2 / -3
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SAS GV G E P *R LP M E +L+VRVM+++P* *+PCGLGRAALAV+F
Sbjct: 207 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 28
Query: 376 RNDLAWLMD 350
DLAW D
Sbjct: 27 LMDLAWFRD 1
>gb|BG318141.1|BG318141 NXPV_010_H11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_H11 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 136 bits (292), Expect(2) = 2e-061
Identities = 53/91 (58%), Positives = 67/91 (73%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 293 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 472
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYL 923
VYP+SWTA++LT DNA M +RS +W R L
Sbjct: 473 VYPQSWTAVLLTXDNAXMXXLRSEIWXRQIL 565
Score = 121 bits (258), Expect(2) = 2e-061
Identities = 48/72 (66%), Positives = 58/72 (80%)
Frame = +3 / +2
Query: 351 SINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRD 530
S+NQARS RWNLTA+AARPNPQGSYHYG I ITRTIK+ S I+GK RY NG+S+
Sbjct: 2 SLNQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLR 181
Query: 531 PETPVKLAEYFN 566
P TP++LA+Y+N
Sbjct: 182 PSTPLQLADYYN 217
Score = 86.3 bits (182), Expect(2) = 6e-034
Identities = 43/86 (50%), Positives = 50/86 (58%)
Frame = -2 / -3
Query: 916 YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKK 737
+R DR ALS V AVHD GYTW+V R T S RL FL++G H P IPT KK
Sbjct: 558 WRXHISDRXXXXXALSXVKRTAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKK 379
Query: 736 A*PSTWRESMLFSGFSKTISMKVRNS 659
PS + ++FS F TIS KVR S
Sbjct: 378 EYPSKCHDWIVFS*FWNTISTKVRYS 301
Score = 79.4 bits (167), Expect(2) = 6e-034
Identities = 39/69 (56%), Positives = 46/69 (66%)
Frame = -2 / -3
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SAS GV G E P *R LP M E +L+VRVM+++P* *+PCGLGRAALAV+F
Sbjct: 207 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 28
Query: 376 RNDLAWLMD 350
DLAW D
Sbjct: 27 LMDLAWFRD 1
>gb|AL750537.1|AL750537 AL750537 RN Pinus pinaster cDNA clone RN03F03 similar to
PECTINESTERASE, mRNA sequence
Length = 626
Score = 136 bits (292), Expect(2) = 3e-061
Identities = 56/95 (58%), Positives = 69/95 (72%)
Frame = +3 / +1
Query: 33 KTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDADQA 212
KTYR R+ N G+ +SLNFRIQGH MKLVE+EGSHT+Q++YDSLD+H+G SVLV ADQ
Sbjct: 1 KTYRFRISNVGLASSLNFRIQGHKMKLVEVEGSHTVQNIYDSLDIHLGQSYSVLVTADQP 180
Query: 213 PGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
P YYMVASTRF + A +RY+ S + P
Sbjct: 181 PQAYYMVASTRFTTPMLTGIAFLRYSNSQTSASGP 285
Score = 120 bits (256), Expect(2) = 3e-061
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / +1
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P G WS+NQARS RWNLTAS RPNPQGSYHYG IN +RTI + S I+GK RY N
Sbjct: 298 PTGIDWSLNQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVN 477
Query: 513 GISHRDPETPVKLAEYFN 566
IS P+TP+KLA+Y N
Sbjct: 478 SISFIQPDTPLKLADYLN 531
Score = 67.5 bits (141), Expect(2) = 8e-022
Identities = 34/77 (44%), Positives = 44/77 (57%)
Frame = -2 / -1
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
K SA+F GVSG + E+ P + E +++VR + I P*W*+P G GR LAVR
Sbjct: 527 K*SANFKGVSGWIKEILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*GFGRGPLAVR 348
Query: 382 FQRNDLAWLMDQAQPAG 332
F D AW DQ+ P G
Sbjct: 347 FHLMDRAWFNDQSIPVG 297
Score = 57.4 bits (119), Expect(2) = 8e-022
Identities = 34/70 (48%), Positives = 42/70 (60%)
Frame = -2 / -1
Query: 250 MNRVEATM**SPGAWSASTSTERQWPTCTSSESYTSCRVCEPSSSTSFMSWPWMRKLSDA 71
+NRV+ATM**+ G SA TSTE P S ESY V EPS+STSF+ P + K +
Sbjct: 218 VNRVDATM**A*GG*SAVTSTE*D*PK*MSRESYMF*TV*EPSTSTSFILCP*ILKFREL 39
Query: 70 LIPVLHTRRR 41
P L R+R
Sbjct: 38 AKPTLDMRKR 9
>gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 5', mRNA sequence
Length = 858
Score = 163 bits (350), Expect(3) = 1e-060
Identities = 62/100 (62%), Positives = 77/100 (77%)
Frame = +3 / -3
Query: 648 VITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTI 827
V + +FR+FIEIVF+N E +I S HVDGY+FF GM G WSP RK+YNL D VSR T
Sbjct: 604 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 425
Query: 828 QVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISV 947
QVYP+SWTAI++ DNAGMW++RS +W R YLG+QFY+ V
Sbjct: 424 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 305
Score = 92.7 bits (196), Expect(2) = 3e-028
Identities = 47/108 (43%), Positives = 64/108 (59%)
Frame = -2 / +3
Query: 946 TLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDH 767
T M*NC P+ + D H+PALS+++ IAV D GYT +V R T S+RL +FL++G H
Sbjct: 306 TFM*NCCPKYCLAHIPDLMFHIPALSSITKIAVQDWGYTCVVERETASNRL*LFLLAGLH 485
Query: 766 VPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMTLGMTWRGP 623
P IP KK *PST + ++FS F TIS+ N +T + P
Sbjct: 486 CPPSIPATKKE*PSTCHD*IVFSLFWNTISINDLNWPDVTAAWRYAPP 629
Score = 81.7 bits (172), Expect(3) = 1e-060
Identities = 35/59 (59%), Positives = 43/59 (72%)
Frame = +3 / -3
Query: 387 TASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYF 563
TA+AARPNPQGSYHYG I +RTI + S I+GK RY NG+S +TP+KLA+YF
Sbjct: 856 TANAARPNPQGSYHYGLIKPSRTIILANSAPIINGKQRYAVNGVSFLPLDTPLKLADYF 680
Score = 53.8 bits (111), Expect(2) = 3e-028
Identities = 31/60 (51%), Positives = 34/60 (56%)
Frame = -2 / +3
Query: 565 LKYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAV 386
LK SASF GVS E P R P M E ++V + P* *EPCGLGRAALAV
Sbjct: 678 LK*SASFRGVSRGKKETPFTAYRCFPLMMGAELARMIVLEGFMRP***EPCGLGRAALAV 857
Score = 28.6 bits (56), Expect(3) = 1e-060
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3 / -3
Query: 972 DEYNMPDNALRCGKVVG 1022
DEY+ P NAL CG+ G
Sbjct: 286 DEYSAPRNALMCGRARG 236
>gb|AL750713.1|AL750713 AL750713 RN Pinus pinaster cDNA clone RN06E03 similar to
PECTINESTERASE, mRNA sequence
Length = 670
Score = 120 bits (256), Expect(3) = 3e-060
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / +3
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P G WS+NQARS RWNLTAS RPNPQGSYHYG IN +RTI + S I+GK RY N
Sbjct: 129 PTGIDWSLNQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVN 308
Query: 513 GISHRDPETPVKLAEYFN 566
IS P+TP+KLA+Y N
Sbjct: 309 SISFIQPDTPLKLADYLN 362
Score = 113 bits (241), Expect(3) = 3e-060
Identities = 47/87 (54%), Positives = 59/87 (67%)
Frame = +3 / +3
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G W+ K YNL
Sbjct: 408 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTQASMKEYNL 587
Query: 801 LDTVSRHTIQVYPRSWTAIMLTFDNAG 881
DTVSR T QVYP SWTAI + DN G
Sbjct: 588 FDTVSRCTTQVYPNSWTAIRVPLDNVG 668
Score = 67.5 bits (141), Expect(2) = 1e-024
Identities = 34/77 (44%), Positives = 44/77 (57%)
Frame = -2 / -1
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
K SA+F GVSG + E+ P + E +++VR + I P*W*+P G GR LAVR
Sbjct: 358 K*SANFKGVSGWIKEILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*GFGRGPLAVR 179
Query: 382 FQRNDLAWLMDQAQPAG 332
F D AW DQ+ P G
Sbjct: 178 FHLMDRAWFNDQSIPVG 128
Score = 67.0 bits (140), Expect(2) = 1e-024
Identities = 35/79 (44%), Positives = 48/79 (60%)
Frame = -2 / -1
Query: 883 MPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESML 704
+P LS + IAVH+ G T +V R TVS++LY F+++ H P IP K *PS + ++
Sbjct: 670 IPTLSRGTRIAVHELG*TCVVQRETVSNKLYSFMLACVHWPPSIPRTKNE*PSRCHDWIV 491
Query: 703 FSGFSKTISMKVRNSAVMT 647
S F KTISMK S +T
Sbjct: 490 SSLFWKTISMKALKSEPIT 434
Score = 38.6 bits (78), Expect(3) = 3e-060
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3 / +3
Query: 204 DQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAP 317
DQ P YYMVASTRF + A +RY+ S + P
Sbjct: 3 DQPPQAYYMVASTRFTTPMLTGIAFLRYSNSQTSASGP 116
>gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 5', mRNA sequence
Length = 846
Score = 187 bits (403), Expect(2) = 6e-060
Identities = 74/131 (56%), Positives = 95/131 (72%)
Frame = +3 / +2
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G W+ K YNL
Sbjct: 209 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 388
Query: 801 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEY 980
DTVSR T QVYP SWTAI + DN GMW++RS W R YLG+QFY+ V SPA S RDEY
Sbjct: 389 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 568
Query: 981 NMPDNALRCGK 1013
++P+NAL+CG+
Sbjct: 569 SIPNNALKCGR 601
Score = 109 bits (233), Expect(2) = 6e-028
Identities = 57/121 (47%), Positives = 74/121 (61%)
Frame = -2 / -1
Query: 1009 PQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYT 830
P RAL G+ YSS ++ AGE T *NC PR R+Q DR H+P LS + IAVH+ G T
Sbjct: 597 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 418
Query: 829 WIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 650
+V R TVS++LY F+++ H P IP K *PS + ++ S F KTISMK S +
Sbjct: 417 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 238
Query: 649 T 647
T
Sbjct: 237 T 235
Score = 65.2 bits (136), Expect(2) = 6e-060
Identities = 27/48 (56%), Positives = 34/48 (70%)
Frame = +3 / +2
Query: 417 GSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEY 560
GSYHYG IN +RTI + S I+GK RY N IS+ P+TP+KLA+Y
Sbjct: 14 GSYHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPDTPLKLADY 157
Score = 35.9 bits (72), Expect(2) = 6e-028
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -2 / -1
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EP 416
K SA+F GVSG + E+ P + E +++VR + I P*W*+P
Sbjct: 159 K*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W*DP 13
>gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_E02_A029 3', mRNA sequence
Length = 834
Score = 187 bits (403), Expect(2) = 1e-058
Identities = 74/131 (56%), Positives = 95/131 (72%)
Frame = +3 / +1
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G W+ K YNL
Sbjct: 190 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 369
Query: 801 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEY 980
DTVSR T QVYP SWTAI + DN GMW++RS W R YLG+QFY+ V SPA S RDEY
Sbjct: 370 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 549
Query: 981 NMPDNALRCGK 1013
++P+NAL+CG+
Sbjct: 550 SIPNNALKCGR 582
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 57/121 (47%), Positives = 74/121 (61%)
Frame = -2 / -2
Query: 1009 PQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYT 830
P RAL G+ YSS ++ AGE T *NC PR R+Q DR H+P LS + IAVH+ G T
Sbjct: 578 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 399
Query: 829 WIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 650
+V R TVS++LY F+++ H P IP K *PS + ++ S F KTISMK S +
Sbjct: 398 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 219
Query: 649 T 647
T
Sbjct: 218 T 216
Score = 60.6 bits (126), Expect(2) = 1e-058
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +3 / +1
Query: 423 YHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEY 560
YHYG IN +RTI + S I+GK RY N IS+ P+TP+KLA+Y
Sbjct: 1 YHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPDTPLKLADY 138
Score = 31.3 bits (62), Expect(2) = 1e-026
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2 / -2
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W 425
K SA+F GVSG + E+ P + E +++VR + I P*W
Sbjct: 140 K*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W 3
>gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 3', mRNA sequence
Length = 825
Score = 187 bits (403), Expect(2) = 1e-058
Identities = 74/131 (56%), Positives = 95/131 (72%)
Frame = +3 / +1
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G W+ K YNL
Sbjct: 190 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 369
Query: 801 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEY 980
DTVSR T QVYP SWTAI + DN GMW++RS W R YLG+QFY+ V SPA S RDEY
Sbjct: 370 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEY 549
Query: 981 NMPDNALRCGK 1013
++P+NAL+CG+
Sbjct: 550 SIPNNALKCGR 582
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 57/121 (47%), Positives = 74/121 (61%)
Frame = -2 / -2
Query: 1009 PQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYT 830
P RAL G+ YSS ++ AGE T *NC PR R+Q DR H+P LS + IAVH+ G T
Sbjct: 578 PHFRALLGIEYSSLNEPAGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVHELG*T 399
Query: 829 WIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 650
+V R TVS++LY F+++ H P IP K *PS + ++ S F KTISMK S +
Sbjct: 398 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 219
Query: 649 T 647
T
Sbjct: 218 T 216
Score = 60.6 bits (126), Expect(2) = 1e-058
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +3 / +1
Query: 423 YHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEY 560
YHYG IN +RTI + S I+GK RY N IS+ P+TP+KLA+Y
Sbjct: 1 YHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPDTPLKLADY 138
Score = 31.3 bits (62), Expect(2) = 1e-026
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2 / -2
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W 425
K SA+F GVSG + E+ P + E +++VR + I P*W
Sbjct: 140 K*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W 3
>gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_B12_A029 3', mRNA sequence
Length = 739
Score = 203 bits (438), Expect(2) = 1e-058
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +3 / +3
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK+YNL D VSR T Q
Sbjct: 192 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 371
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP SWTAI+LTFDNAG+W++RS WER +LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 372 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 551
Query: 1011 KVVGLPLPP 1037
K G P P
Sbjct: 552 KATGRPRLP 578
Score = 115 bits (246), Expect = 7e-025
Identities = 59/122 (48%), Positives = 71/122 (58%)
Frame = -2 / -1
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D G+ TL C PR RS D H PALS V
Sbjct: 577 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 398
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
+AVH+ GYT +V R T S RL +FL +G P PT KKA PS ++ ++FS F TIS
Sbjct: 397 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*FWNTIS 218
Query: 676 MK 671
K
Sbjct: 217 TK 212
Score = 44.6 bits (91), Expect(2) = 1e-058
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3 / +3
Query: 453 TIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYFN 566
TIK+ S I+GK RY NG+S+ TP++LA+Y+N
Sbjct: 3 TIKLANSAPFINGKQRYAVNGVSYVPSTTPLQLADYYN 116
>gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP077H07 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 681
Score = 199 bits (430), Expect(2) = 3e-057
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +3 / +3
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 165 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 344
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP+SWTA++LTFDNAGMW++RS +W R YLG+Q YI V + RS RDEY++P NAL CG
Sbjct: 345 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCG 524
Query: 1011 KVVGLPLPP 1037
K G P P
Sbjct: 525 KARGRPRLP 551
Score = 132 bits (283), Expect = 6e-030
Identities = 65/126 (51%), Positives = 76/126 (60%)
Frame = -2 / -3
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D TLM C PR +R+ DR H+PALS V
Sbjct: 550 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 371
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
AVHD GYTW+V R T S RL FL++G H P IPT KK PS + ++FS F TIS
Sbjct: 370 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTIS 191
Query: 676 MKVRNS 659
KVR S
Sbjct: 190 TKVRYS 173
Score = 43.7 bits (89), Expect(2) = 3e-057
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3 / +3
Query: 483 IDGKLRYGFNGISHRDPETPVKLAEYFN 566
I+GK RY NG+S+ P TP++LA+Y+N
Sbjct: 6 INGKQRYAVNGVSYLRPSTPLQLADYYN 89
>gb|BF609099.1|BF609099 NXSI_040_D04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_040_D04 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 527
Score = 127 bits (271), Expect(2) = 7e-055
Identities = 50/78 (64%), Positives = 60/78 (76%)
Frame = +3 / +3
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P WS+NQARS RWNLTA+AARPNPQGSYHYG I ITRTIK+ S I+GK RY N
Sbjct: 3 PTEIVWSLNQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVN 182
Query: 513 GISHRDPETPVKLAEYFN 566
G+S+ P TP++LA+Y+N
Sbjct: 183 GVSYLRPSTPLQLADYYN 236
Score = 108 bits (231), Expect(2) = 7e-055
Identities = 42/72 (58%), Positives = 54/72 (75%)
Frame = +3 / +3
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+ Y+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 312 LSVEYRTFVEIVFQNYENTIQSWHLXXYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 491
Query: 831 VYPRSWTAIMLT 866
VYP+SWTA++LT
Sbjct: 492 VYPQSWTAVLLT 527
Score = 82.6 bits (174), Expect(2) = 8e-031
Identities = 41/75 (54%), Positives = 48/75 (64%)
Frame = -2 / -2
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SAS GV G E P *R LP M E +L+VRVM+++P* *+PCGLGRAALAV+F
Sbjct: 226 SASCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 47
Query: 376 RNDLAWLMDQAQPAG 332
DLAW DQ G
Sbjct: 46 LMDLAWFRDQTISVG 2
Score = 72.5 bits (152), Expect(2) = 8e-031
Identities = 36/69 (52%), Positives = 42/69 (60%)
Frame = -2 / -2
Query: 865 VSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSK 686
V AVHD GYTW+V R T S RL FL++G H P IPT KK S + ++FS F
Sbjct: 526 VKRTAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYXSKCHDWIVFS*FWN 347
Query: 685 TISMKVRNS 659
TIS KVR S
Sbjct: 346 TISTKVRYS 320
>gb|DR180938.1|DR180938 RTMNUT1_35_F12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_35_F12_A029 5', mRNA sequence
Length = 808
Score = 210 bits (454), Expect = 1e-053
Identities = 86/145 (59%), Positives = 106/145 (73%)
Frame = +3 / +3
Query: 24 EAGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDA 203
+ GKTY+LR+ N G+ +LNFRIQGH MKLVE+EGSHT+Q+VYD+LD+HVG SVL+ A
Sbjct: 369 DPGKTYKLRISNVGLSTTLNFRIQGHKMKLVEVEGSHTIQNVYDALDIHVGQSCSVLITA 548
Query: 204 DQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAPNMTEPPAGWAWSINQARSFRWN 383
+Q P DYY+VASTRF + A++RY+ S P P WSINQA+S RWN
Sbjct: 549 NQVPKDYYIVASTRFTTPVLNGVALLRYSNSRQPASGPLPPGPTIQIDWSINQAKSIRWN 728
Query: 384 LTASAARPNPQGSYHYGQINITRTI 458
LTA+AARPNPQGSYHYG I +RTI
Sbjct: 729 LTANAARPNPQGSYHYGLIKPSRTI 803
Score = 112 bits (239), Expect = 7e-024
Identities = 64/141 (45%), Positives = 78/141 (55%)
Frame = -2 / -1
Query: 433 P*W*EPCGLGRAALAVRFQRNDLAWLMDQAQPAGGSVMFGAGGAPLEPA*RMTAEADLAS 254
P* *EPCGLGRAALAV+F D AWL+DQ+ G G LE *R A
Sbjct: 778 P***EPCGLGRAALAVKFHLMDFAWLIDQSI*IVGPGGRGPEAGCLELL*RRRATPFNTG 599
Query: 253 WMNRVEATM**SPGAWSASTSTERQWPTCTSSESYTSCRVCEPSSSTSFMSWPWMRKLSD 74
+ RV+ATM**S G W A STE+ PT S S T V +PS+STSF+ WPW+ K +
Sbjct: 598 VVKRVDATM**SLGTWFAVMSTEQD*PTWISRAS*TF*IVWDPSTSTSFILWPWILKFNV 419
Query: 73 ALIPVLHTRRRYVLPASKVSM 11
P R V P S +++
Sbjct: 418 VDSPTFEIRSL*VFPGSTLNV 356
>gb|AI812966.1|AI812966 2B1 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 755
Score = 108 bits (231), Expect(4) = 2e-053
Identities = 45/76 (59%), Positives = 54/76 (71%)
Frame = +3 / +1
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P G WS+NQARS RWNLTAS+ R N QGSYHYG IN +RTI + S I+GK RY N
Sbjct: 187 PTGIDWSLNQARSIRWNLTASSPRANXQGSYHYGMINTSRTIILANSAPVINGKQRYAVN 366
Query: 513 GISHRDPETPVKLAEY 560
I + P+TP+KLA+Y
Sbjct: 367 SIFYIQPDTPLKLADY 414
Score = 62.9 bits (131), Expect(4) = 2e-053
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +3 / +1
Query: 144 DVYDSLDVHVGHCLSVLVDADQAPGDYYMVASTRFIHDAKSASAVIRYA 290
++YD +DVH+G C SVLV ADQ P YY+VASTRF + +RY+
Sbjct: 1 NIYDFIDVHLGQCYSVLVTADQPPQGYYIVASTRFTTPILTGIVFMRYS 147
Score = 60.2 bits (125), Expect(4) = 8e-021
Identities = 31/77 (40%), Positives = 42/77 (54%)
Frame = -2 / -1
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
K SA+F GVSG + ++ P + E +++VR + I P*W*+P R LAVR
Sbjct: 416 K*SANFKGVSGCI*KILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*XFARGLLAVR 237
Query: 382 FQRNDLAWLMDQAQPAG 332
F D AW DQ+ P G
Sbjct: 236 FHLMDRAWFNDQSIPVG 186
Score = 57.9 bits (120), Expect(4) = 2e-053
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +3 / +1
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPG 764
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G
Sbjct: 466 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGG 609
Score = 38.2 bits (77), Expect(4) = 2e-053
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3 / +3
Query: 768 WSPEMRKTYNLLDTVSRHTIQVYP 839
W+ K YNL DTVSR T QVYP
Sbjct: 612 WTEASMKEYNLFDTVSRCTTQVYP 683
Score = 34.5 bits (69), Expect(4) = 8e-021
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = -2 / -1
Query: 250 MNRVEATM**SPGAWSASTSTERQWPTCTSSESY 149
+NRV+ATM** G SA TSTE P TS +SY
Sbjct: 107 VNRVDATM**P*GG*SAVTSTE*H*PK*TSIKSY 6
Score = 31.8 bits (63), Expect(4) = 8e-021
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -2 / -1
Query: 766 VPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVMT 647
+P IP K *PS + ++ S F KTISMK S +T
Sbjct: 611 LPPSIPXTKNE*PSRCHDWIVSSLFWKTISMKALKSEPIT 492
Score = 29.5 bits (58), Expect(4) = 8e-021
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2 / -2
Query: 838 GYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPK 740
G T +V R TVS++LY F+++ H P K
Sbjct: 682 GXTCVVQRETVSNKLYSFMLASVHCHHPFLXQK 584
>gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 5', mRNA sequence
Length = 732
Score = 198 bits (427), Expect(2) = 2e-053
Identities = 78/129 (60%), Positives = 96/129 (74%)
Frame = +3 / -2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H DGY+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 596 LSVEYRTFVEIVFQNYENTIQSWHSDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 417
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP+SWTA++LTFDNAGMW++RS +W R YLG+Q YI V + RS RDEY++P NAL CG
Sbjct: 416 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCG 237
Query: 1011 KVVGLPLPP 1037
K G P P
Sbjct: 236 KARGRPRLP 210
Score = 132 bits (283), Expect = 6e-030
Identities = 65/126 (51%), Positives = 76/126 (60%)
Frame = -2 / +1
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D TLM C PR +R+ DR H+PALS V
Sbjct: 211 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 390
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
AVHD GYTW+V R T S RL FL++G H P IPT KK PS + ++FS F TIS
Sbjct: 391 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSECHDWIVFS*FWNTIS 570
Query: 676 MKVRNS 659
KVR S
Sbjct: 571 TKVRYS 588
Score = 32.2 bits (64), Expect(2) = 2e-053
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3 / -2
Query: 510 NGISHRDPETPVKLAEYFN 566
NG+S+ P TP++LA+Y+N
Sbjct: 728 NGVSYLRPSTPLQLADYYN 672
>gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110F04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 521
Score = 182 bits (392), Expect(2) = 5e-052
Identities = 70/116 (60%), Positives = 89/116 (76%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 173 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 352
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNA 998
VYP+SWTA++LTFDNAGMW++RS +W R YLG+ YI V + RS RDEY++P NA
Sbjct: 353 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQXTYIKVKTLVRSARDEYDIPHNA 520
Score = 111 bits (236), Expect = 2e-023
Identities = 57/113 (50%), Positives = 68/113 (60%)
Frame = -2 / -3
Query: 997 ALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVC 818
AL G+ YSS +D TLM PR +R+ DR H+PALS V AVHD GYTW+V
Sbjct: 519 AL*GISYSSLADLTRVFTLMYVX*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYTWVVQ 340
Query: 817 RLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 659
R T S RL FL++G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 339 RETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 181
Score = 43.7 bits (89), Expect(2) = 5e-052
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3 / +2
Query: 483 IDGKLRYGFNGISHRDPETPVKLAEYFN 566
I+GK RY NG+S+ P TP++LA+Y+N
Sbjct: 14 INGKQRYAVNGVSYLRPSTPLQLADYYN 97
>gb|AI812692.1|AI812692 17H9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 524
Score = 177 bits (381), Expect(2) = 1e-051
Identities = 68/111 (61%), Positives = 86/111 (77%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 191 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 370
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYN 983
VYP+SWTA++LTFDNAGMW++RS +W R YLG+Q YI V + RS RDEY+
Sbjct: 371 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYD 523
Score = 111 bits (238), Expect = 9e-024
Identities = 55/107 (51%), Positives = 65/107 (60%)
Frame = -2 / -3
Query: 979 YSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYTWIVCRLTVSS 800
YSS +D TLM C PR +R+ DR H+PALS V AVHD GYTW+V R T S
Sbjct: 519 YSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYTWVVQRETASK 340
Query: 799 RLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNS 659
RL FL++G H P IPT KK PS + ++FS F TIS KVR S
Sbjct: 339 RL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 199
Score = 47.8 bits (98), Expect(2) = 1e-051
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +3 / +2
Query: 453 TIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYFN 566
TIK+ S I+GK RY NG+S+ P TP++LA+Y+N
Sbjct: 2 TIKLANSAPVINGKQRYAVNGVSYLRPSTPLQLADYYN 115
>gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_C05_A029 3', mRNA sequence
Length = 733
Score = 204 bits (440), Expect = 1e-051
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +3 / +1
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
+ E+R F+EIVF+N E +I S H+DGYAFF VG+ G W+P RK YNL D VSR T Q
Sbjct: 22 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKNYNLFDAVSRCTTQ 201
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP SWTAI+LTFDNAG+W++RS WER++LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 202 VYPNSWTAILLTFDNAGLWNLRSQTWERHFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 381
Query: 1011 KVVGLPLPP 1037
K G P P
Sbjct: 382 KATGRPRLP 408
Score = 114 bits (243), Expect = 2e-024
Identities = 59/122 (48%), Positives = 70/122 (57%)
Frame = -2 / -3
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D G+ TL C PR RS D H PALS V
Sbjct: 407 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRKCRSHVCDLRFHSPALSKVKR 228
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
+AVH+ GYT +V R T S RL FL +G P PT KKA PS ++ ++FS F TIS
Sbjct: 227 MAVHEFGYT*VVQRETASKRL*FFLFAGVQSPPSNPTTKKAYPSKCQDWIVFS*FWNTIS 48
Query: 676 MK 671
K
Sbjct: 47 TK 42
>gb|DR071393.1|DR071393 RTDK1_19_C07.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_C07_A029 5', mRNA sequence
Length = 600
Score = 204 bits (440), Expect = 1e-051
Identities = 82/137 (59%), Positives = 101/137 (73%)
Frame = +3 / +2
Query: 24 EAGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVDA 203
+ GKTY+LR+ N G+ +LNFRIQGH MKLVE+EGSHT+Q+VYD+LD+HVG SVL+ A
Sbjct: 188 DPGKTYKLRISNVGLSTTLNFRIQGHKMKLVEVEGSHTIQNVYDALDIHVGQSCSVLITA 367
Query: 204 DQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAPPAPNMTEPPAGWAWSINQARSFRWN 383
+Q P DYY+VASTRF + A++RY+ S P P WSINQA+S RWN
Sbjct: 368 NQVPKDYYIVASTRFTTPVLNGVALLRYSNSRQPASGPLPPGPTIQIDWSINQAKSIRWN 547
Query: 384 LTASAARPNPQGSYHYG 434
LTA+AARPNPQGSYHYG
Sbjct: 548 LTANAARPNPQGSYHYG 598
Score = 112 bits (239), Expect = 7e-024
Identities = 64/141 (45%), Positives = 78/141 (55%)
Frame = -2 / -1
Query: 433 P*W*EPCGLGRAALAVRFQRNDLAWLMDQAQPAGGSVMFGAGGAPLEPA*RMTAEADLAS 254
P* *EPCGLGRAALAV+F D AWL+DQ+ G G LE *R A
Sbjct: 597 P***EPCGLGRAALAVKFHLMDFAWLIDQSI*IVGPGGRGPEAGCLELL*RRRATPFNTG 418
Query: 253 WMNRVEATM**SPGAWSASTSTERQWPTCTSSESYTSCRVCEPSSSTSFMSWPWMRKLSD 74
+ RV+ATM**S G W A STE+ PT S S T V +PS+STSF+ WPW+ K +
Sbjct: 417 VVKRVDATM**SLGTWFAVMSTEQD*PTWISRAS*TF*IVWDPSTSTSFILWPWILKFNV 238
Query: 73 ALIPVLHTRRRYVLPASKVSM 11
P R V P S +++
Sbjct: 237 VDSPTFEIRSL*VFPGSTLNV 175
>gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_H11_A034 3', mRNA sequence
Length = 784
Score = 185 bits (399), Expect(2) = 1e-051
Identities = 73/131 (55%), Positives = 94/131 (71%)
Frame = +3 / +1
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G W+ K YNL
Sbjct: 139 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 318
Query: 801 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEY 980
DTVSR T QVYP SWTAI + DN GMW++RS W R YLG+QFY+ V SP S RDEY
Sbjct: 319 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSFRDEY 498
Query: 981 NMPDNALRCGK 1013
++P+NAL+CG+
Sbjct: 499 SIPNNALKCGR 531
Score = 104 bits (221), Expect = 2e-021
Identities = 55/121 (45%), Positives = 72/121 (59%)
Frame = -2 / -3
Query: 1009 PQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVHDRGYT 830
P RAL G+ YSS ++ GE T *NC PR R+Q DR H+P LS + IAV + G T
Sbjct: 527 PHFRALLGIEYSSLNEPTGE*TRR*NCCPRY*RAQFSDRKFHIPTLSRGTRIAVQELG*T 348
Query: 829 WIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVRNSAVM 650
+V R TVS++LY F+++ H P IP K *PS + ++ S F KTISMK S +
Sbjct: 347 CVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCHDWIVSSLFWKTISMKALKSEPI 168
Query: 649 T 647
T
Sbjct: 167 T 165
Score = 39.1 bits (79), Expect(2) = 1e-051
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3 / +1
Query: 483 IDGKLRYGFNGISHRDPETPVKLAEY 560
I+GK RY N IS P+TP+KLA+Y
Sbjct: 10 INGKQRYAVNSISFIQPDTPLKLADY 87
>gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP061D03, mRNA sequence
Length = 707
Score = 203 bits (437), Expect = 3e-051
Identities = 79/129 (61%), Positives = 96/129 (74%)
Frame = +3 / +3
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
+ E+R FIEIVF+N E +I S H+DGY+FF VGM G W+P RK+YNL D VSR T Q
Sbjct: 30 LNVEYRAFIEIVFQNYENTIQSWHLDGYSFFVVGMDGGDWTPANRKSYNLFDAVSRCTTQ 209
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP SWTAI LTFDNAG+W++RS WER +LG+Q Y+ V SP +SLRDEY++P NAL CG
Sbjct: 210 VYPNSWTAIFLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 389
Query: 1011 KVVGLPLPP 1037
K G P P
Sbjct: 390 KATGRPRLP 416
Score = 118 bits (253), Expect = 8e-026
Identities = 60/122 (49%), Positives = 72/122 (59%)
Frame = -2 / -2
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D G+ TL C PR RS D H PALS V
Sbjct: 415 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKK 236
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
+AVH+ GYT +V R T S RL +FL +G P IPT KK PS ++ ++FS F TIS
Sbjct: 235 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSIPTTKKEYPSKCQDWIVFS*FWNTIS 56
Query: 676 MK 671
MK
Sbjct: 55 MK 50
>gb|BE241098.1|BE241098 NXNV_171_F12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_171_F12 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 511
Score = 140 bits (301), Expect(2) = 9e-051
Identities = 58/94 (61%), Positives = 70/94 (74%)
Frame = +3 / +1
Query: 15 LTFEAGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVL 194
+T E GKTYRLR+ N G+ +SLNFRIQGH MKLVE+EGSHT+Q+ Y+SLD+HVG SVL
Sbjct: 16 VTVEQGKTYRLRISNVGLSSSLNFRIQGHKMKLVEVEGSHTVQNEYESLDIHVGQSYSVL 195
Query: 195 VDADQAPGDYYMVASTRFIHDAKSASAVIRYAGS 296
V ADQ P DYY+VASTRF S + Y+ S
Sbjct: 196 VTADQPPQDYYLVASTRFATPEIFISGIFHYSNS 297
Score = 81.3 bits (171), Expect(2) = 9e-051
Identities = 33/52 (63%), Positives = 36/52 (69%)
Frame = +3 / +1
Query: 348 WSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRY 503
WS+N RS RWNLTA AARPNP SYHYG I ITRT + S I+GK RY
Sbjct: 346 WSLNXXRSIRWNLTAXAARPNPXXSYHYGNITITRTXXLANSXPVINGKQRY 501
Score = 73.9 bits (155), Expect(2) = 4e-024
Identities = 38/77 (49%), Positives = 47/77 (61%)
Frame = -2 / -3
Query: 244 RVEATM**SPGAWSASTSTERQWPTCTSSESYTSCRVCEPSSSTSFMSWPWMRKLSDALI 65
RV+AT **S G SA T TE WPT S +SY+ C V +PS+STSF+ P + K +
Sbjct: 245 RVDATK**S*GG*SAVTRTE*DWPT*MSRDSYSFCTV*DPSTSTSFIL*P*ILKFKEDDN 66
Query: 64 PVLHTRRRYVLPASKVS 14
P RRRYV P S V+
Sbjct: 65 PTFEIRRRYVFPCSTVT 15
Score = 58.8 bits (122), Expect(2) = 4e-024
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = -2 / -3
Query: 502 *RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQRNDLAWLMDQ 347
*R LP M E +VRVM+++P* *+ CGLGRAA AV+F DL W DQ
Sbjct: 500 *RCLPLMTGXEFAXXIVRVMVMFP***DXCGLGRAAXAVKFHLMDLXWFRDQ 345
>gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085B04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 613
Score = 199 bits (430), Expect = 3e-050
Identities = 78/129 (60%), Positives = 97/129 (75%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 50 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 229
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP+SWTA++LTFDNAGMW++RS +W R YLG+Q YI V + RS RDEY++P NAL CG
Sbjct: 230 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCG 409
Query: 1011 KVVGLPLPP 1037
K G P P
Sbjct: 410 KARGRPRLP 436
Score = 132 bits (283), Expect = 6e-030
Identities = 65/126 (51%), Positives = 76/126 (60%)
Frame = -2 / -2
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D TLM C PR +R+ DR H+PALS V
Sbjct: 435 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 256
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
AVHD GYTW+V R T S RL FL++G H P IPT KK PS + ++FS F TIS
Sbjct: 255 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTIS 76
Query: 676 MKVRNS 659
KVR S
Sbjct: 75 TKVRYS 58
>gb|CX715391.1|CX715391 RTPQ1_33_G10.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_G10_A032 5', mRNA sequence
Length = 514
Score = 123 bits (264), Expect(2) = 3e-050
Identities = 50/92 (54%), Positives = 64/92 (69%)
Frame = +3 / +2
Query: 621 NGPLHVIPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNL 800
NG ++ V+ ++FR FIEIVF+N E +I S H+DGY+FF +GM G W+ K YNL
Sbjct: 239 NGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNL 418
Query: 801 LDTVSRHTIQVYPRSWTAIMLTFDNAGMWSVR 896
DTVSR T QVYP SWTAI + DN GMW++R
Sbjct: 419 FDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLR 514
Score = 96.4 bits (204), Expect(2) = 3e-050
Identities = 39/62 (62%), Positives = 46/62 (74%)
Frame = +3 / +2
Query: 375 RWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRDPETPVKLA 554
RWNLTAS RPNPQGSYHYG IN +RTI + S I+GK RY N IS+ P+TP+KLA
Sbjct: 2 RWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSISYIQPDTPLKLA 181
Query: 555 EY 560
+Y
Sbjct: 182 DY 187
Score = 73.9 bits (155), Expect(2) = 4e-022
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = -2 / -2
Query: 895 RTLHMPALSNVSMIAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWR 716
R H+P LS + IAVH+ G T +V R TVS++LY F+++ H P IP K *PS
Sbjct: 513 RKFHIPTLSRGTRIAVHELG*TCVVQRETVSNKLYSFMLASVHWPPSIPRTKNE*PSRCH 334
Query: 715 ESMLFSGFSKTISMKVRNSAVMT 647
+ ++ S F KTISMK S +T
Sbjct: 333 DWIVSSLFWKTISMKALKSEPIT 265
Score = 51.9 bits (107), Expect(2) = 4e-022
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = -2 / -2
Query: 562 KYSASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVR 383
K SA+F GVSG + E+ P + E +++VR + I P*W*+P G GR LAVR
Sbjct: 189 K*SANFKGVSGCI*EILFTAYLCFPLITGAELASIIVREVFIIP*W*DP*GFGRGPLAVR 10
Query: 382 F 380
F
Sbjct: 9 F 7
>gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 3', mRNA sequence
Length = 630
Score = 198 bits (427), Expect = 8e-050
Identities = 78/126 (61%), Positives = 95/126 (75%)
Frame = +3 / +1
Query: 660 EFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQVYP 839
E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P RK YNL D VSR T QVYP
Sbjct: 4 EYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQVYP 183
Query: 840 RSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCGKVV 1019
+SWTA++LTFDNAGMW++RS +W R YLG+Q YI V + RS RDEY++P NAL CGK
Sbjct: 184 QSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCGKAR 363
Query: 1020 GLPLPP 1037
G P P
Sbjct: 364 GRPRLP 381
Score = 132 bits (283), Expect = 6e-030
Identities = 65/126 (51%), Positives = 76/126 (60%)
Frame = -2 / -2
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D TLM C PR +R+ DR H+PALS V
Sbjct: 380 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 201
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
AVHD GYTW+V R T S RL FL++G H P IPT KK PS + ++FS F TIS
Sbjct: 200 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTIS 21
Query: 676 MKVRNS 659
KVR S
Sbjct: 20 TKVRYS 3
>gb|CX648550.1|CX648550 COLD1_29_H06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_H06_A029 3', mRNA sequence
Length = 645
Score = 125 bits (268), Expect(2) = 1e-049
Identities = 52/96 (54%), Positives = 67/96 (69%)
Frame = +3 / -3
Query: 21 FEAGKTYRLRVCNTGIKASLNFRIQGHDMKLVELEGSHTLQDVYDSLDVHVGHCLSVLVD 200
F AG TYR R+ N G++ +LNFRIQ H M LVE EGS+TLQ+ Y +LD+HVG SVLV
Sbjct: 508 FNAGATYRFRISNVGMQTTLNFRIQNHRMLLVETEGSYTLQEYYATLDIHVGQSYSVLVT 329
Query: 201 ADQAPGDYYMVASTRFIHDAKSASAVIRYAGSSGAP 308
ADQ+P +Y+VAS RF + A ++YA S+ AP
Sbjct: 328 ADQSPASFYIVASARFTDPVITGIAFLQYANSATAP 221
Score = 92.3 bits (195), Expect(2) = 1e-049
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = +3 / -3
Query: 333 PAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFN 512
P + +S+NQARS RWNLTA AARPNPQGS+HYG IN++RTI++ + I GK R+ N
Sbjct: 187 PMDYNYSLNQARSIRWNLTAGAARPNPQGSFHYGNINVSRTIQLQSTAPIIGGKQRFAVN 8
Query: 513 GI 518
+
Sbjct: 7 NV 2
>gb|BI397653.1|BI397653 NXPV_102_H10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_102_H10 5' similar to Arabidopsis
thaliana sequence At4g22010 pectinesterase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 490
Score = 120 bits (257), Expect(2) = 3e-049
Identities = 48/72 (66%), Positives = 58/72 (80%)
Frame = +3 / +2
Query: 351 SINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRD 530
S+NQARS RWNLTA+AARPNPQGSYHYG I ITRTIK+ S I+GK RY NG+S+
Sbjct: 2 SLNQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLR 181
Query: 531 PETPVKLAEYFN 566
P TP++LA+Y+N
Sbjct: 182 PXTPLQLADYYN 217
Score = 96.4 bits (204), Expect(2) = 3e-049
Identities = 37/66 (56%), Positives = 47/66 (71%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+ F VGM G W+P RK YNL D VSR T
Sbjct: 293 LSVEYRTFVEIVFQNYENTIQSWHLDGYSXFVVGMDGGEWTPASRKYYNLFDAVSRCTTX 472
Query: 831 VYPRSW 848
YP+SW
Sbjct: 473 XYPQSW 490
Score = 80.3 bits (169), Expect(2) = 2e-028
Identities = 39/69 (56%), Positives = 46/69 (66%)
Frame = -2 / -2
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SAS GV G E P *R LP M E +L+VRVM+++P* *+PCGLGRAALAV+F
Sbjct: 207 SASCNGVXGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 28
Query: 376 RNDLAWLMD 350
DLAW D
Sbjct: 27 LMDLAWFRD 1
Score = 67.0 bits (140), Expect(2) = 2e-028
Identities = 32/63 (50%), Positives = 38/63 (60%)
Frame = -2 / -2
Query: 847 HDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKV 668
HD GY W+V R T S RL FL++G H P IPT K PS + ++FS F TIS KV
Sbjct: 489 HDCGYXWVVQRETASKRL*YFLLAGVHSPPSIPTTKXEYPSKCHDWIVFS*FWNTISTKV 310
Query: 667 RNS 659
R S
Sbjct: 309 RYS 301
>gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_A01_A029 3', mRNA sequence
Length = 784
Score = 195 bits (420), Expect = 7e-049
Identities = 75/121 (61%), Positives = 94/121 (77%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 68 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 247
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP+SWTA++LTFDNAGMW++RS +W R YLG+Q YI V + RS RDEY++P NAL CG
Sbjct: 248 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCG 427
Query: 1011 K 1013
K
Sbjct: 428 K 430
Score = 127 bits (271), Expect = 3e-028
Identities = 63/122 (51%), Positives = 74/122 (60%)
Frame = -2 / -2
Query: 1024 SPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSMIAVH 845
S PQRRAL G+ YSS +D TLM C PR +R+ DR H+PALS V AVH
Sbjct: 441 SALAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVH 262
Query: 844 DRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVR 665
D GYTW+V R T S RL FL++G H P IPT KK PS + ++FS F TIS KVR
Sbjct: 261 DCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVR 82
Query: 664 NS 659
S
Sbjct: 81 YS 76
>gb|BI397648.1|BI397648 NXPV_102_G12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_102_G12 5' similar to Arabidopsis
thaliana sequence At4g22010 pectinesterase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 488
Score = 120 bits (256), Expect(2) = 2e-048
Identities = 48/72 (66%), Positives = 57/72 (79%)
Frame = +3 / +2
Query: 351 SINQARSFRWNLTASAARPNPQGSYHYGQINITRTIKVMVSRGHIDGKLRYGFNGISHRD 530
S+NQARS RWNLTA+AARPNPQGSYHYG I ITRTIK+ S I+GK RY NG+S+
Sbjct: 2 SLNQARSIRWNLTANAARPNPQGSYHYGNITITRTIKLANSAPVINGKQRYAVNGVSYLR 181
Query: 531 PETPVKLAEYFN 566
P TP+ LA+Y+N
Sbjct: 182 PSTPLHLADYYN 217
Score = 94.1 bits (199), Expect(2) = 2e-048
Identities = 37/65 (56%), Positives = 47/65 (72%)
Frame = +3 / +2
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P YNL D VSR T Q
Sbjct: 293 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASXXYYNLFDAVSRCTTQ 472
Query: 831 VYPRS 845
VYP+S
Sbjct: 473 VYPQS 487
Score = 77.1 bits (162), Expect(2) = 2e-026
Identities = 38/69 (55%), Positives = 45/69 (65%)
Frame = -2 / -3
Query: 556 SASFTGVSGSLWEMPLKP*RSLPSMWPRETMTLMVRVMLIWP*W*EPCGLGRAALAVRFQ 377
SA GV G E P *R LP M E +L+VRVM+++P* *+PCGLGRAALAV+F
Sbjct: 207 SARCNGVLGRR*ETPFTA*RCLPLMTGAEFASLIVRVMVMFP***DPCGLGRAALAVKFH 28
Query: 376 RNDLAWLMD 350
DLAW D
Sbjct: 27 LMDLAWFRD 1
Score = 62.9 bits (131), Expect(2) = 2e-026
Identities = 31/62 (50%), Positives = 37/62 (59%)
Frame = -2 / -3
Query: 844 DRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTISMKVR 665
D GYTW+V R T S RL ++G H P IPT KK PS + ++FS F TIS KVR
Sbjct: 486 DCGYTWVVQRETASKRL*YXXLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVR 307
Query: 664 NS 659
S
Sbjct: 306 YS 301
>gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_073_G01 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 478
Score = 193 bits (416), Expect = 3e-048
Identities = 74/121 (61%), Positives = 93/121 (76%)
Frame = +3 / +3
Query: 651 ITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQ 830
++ E+RTF+EIVF+N E +I S H+DGY+FF VGM G W+P RK YNL D VSR T Q
Sbjct: 42 LSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQ 221
Query: 831 VYPRSWTAIMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCG 1010
VYP+SWTA++LTFDNAGMW++RS +W R YLG+Q YI V + R RDEY++P NAL CG
Sbjct: 222 VYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRXARDEYDIPHNALLCG 401
Query: 1011 K 1013
K
Sbjct: 402 K 404
Score = 125 bits (268), Expect = 7e-028
Identities = 63/126 (50%), Positives = 74/126 (58%)
Frame = -2 / -1
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G PQRRAL G+ YSS + TLM C PR +R+ DR H+PALS V
Sbjct: 427 GRRGXXLXFPQRRAL*GISYSSLAXLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 248
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
AVHD GYTW+V R T S RL FL++G H P IPT KK PS + ++FS F TIS
Sbjct: 247 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTIS 68
Query: 676 MKVRNS 659
KVR S
Sbjct: 67 TKVRYS 50
>gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_D04_A029 3', mRNA sequence
Length = 647
Score = 193 bits (416), Expect = 3e-048
Identities = 75/121 (61%), Positives = 91/121 (75%)
Frame = +3 / +2
Query: 675 IEIVFENPEKSIDSLHVDGYAFFGVGMGPGTWSPEMRKTYNLLDTVSRHTIQVYPRSWTA 854
+EIVF+N E +I S H+DGYAFF VG+ G W+P RK YNL D VSR T QVYP SWTA
Sbjct: 2 VEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKNYNLFDAVSRCTTQVYPNSWTA 181
Query: 855 IMLTFDNAGMWSVRSNVWERYYLGEQFYISVISPARSLRDEYNMPDNALRCGKVVGLPLP 1034
I+LTFDNAG+W++RS WER +LG+Q Y+ V SP +SLRDEY++P NAL CGK G P
Sbjct: 182 ILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCGKATGRPRL 361
Query: 1035 P 1037
P
Sbjct: 362 P 364
Score = 112 bits (239), Expect = 7e-024
Identities = 58/120 (48%), Positives = 69/120 (57%)
Frame = -2 / -3
Query: 1036 GGSGSPTTLPQRRALSGMLYSSRSDRAGEMTLM*NCSPR*YRSQTLDRTLHMPALSNVSM 857
G G P PQRRAL G+ YSS +D G+ TL C PR RS D H PALS V
Sbjct: 363 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 184
Query: 856 IAVHDRGYTWIVCRLTVSSRLYVFLISGDHVPGPIPTPKKA*PSTWRESMLFSGFSKTIS 677
+AVH+ GYT +V R T S RL FL +G P PT KKA PS ++ ++FS F TIS
Sbjct: 183 MAVHEFGYT*VVQRETASKRL*FFLFAGVQSPPSNPTTKKAYPSKCQDWIVFS*FWNTIS 4
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 638,858,155
Number of Sequences: 355925
Number of extensions: 9026362
Number of successful extensions: 57316
Number of sequences better than 1.0e-020: 140
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 23144520825
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)