TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115147.2.2
(1310 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV035567.1|CV035567 RTNACL1_41_A02.b1_A029 Roots plus ad... 142 6e-060
gb|CO363914.1|CO363914 RTK1_12_C05.g1_A029 Roots minus pota... 153 3e-047
gb|BX677154.1|BX677154 BX677154 RN Pinus pinaster cDNA clon... 184 9e-046
gb|CF670187.1|CF670187 RTCNT1_48_D05.g1_A029 Root control P... 99 2e-044
gb|DR069400.1|DR069400 RTDK1_7_C03.b1_A029 Roots, dark Pinu... 114 9e-044
gb|CO163931.1|CO163931 FLD1_44_E09.g1_A029 Root flooded Pin... 114 3e-043
gb|DT631196.1|DT631196 EST1146127 Normalized pine embryo li... 154 9e-043
gb|CO175253.1|CO175253 NDL1_53_B08.g1_A029 Needles control ... 159 1e-042
gb|DR682995.1|DR682995 EST1073070 Normalized pine embryo li... 152 3e-042
dbj|BD236368.1| Materials and method for modification of pl... 171 1e-041
gb|CF670105.1|CF670105 RTCNT1_48_D05.b1_A029 Root control P... 96 2e-039
gb|CV035637.1|CV035637 RTNACL1_41_A02.g1_A029 Roots plus ad... 122 4e-039
gb|CO361076.1|CO361076 NDL2_2_C07.g1_A029 Needles control 2... 116 5e-037
dbj|BD236378.1| Materials and method for modification of pl... 152 6e-036
gb|DR069487.1|DR069487 RTDK1_7_C03.g1_A029 Roots, dark Pinu... 114 4e-033
gb|CO165626.1|CO165626 FLD1_55_H02.g1_A029 Root flooded Pin... 89 3e-032
gb|CR394133.1|CR394133 CR394133 RN Pinus pinaster cDNA clon... 72 2e-029
gb|BF516684.1|BF516684 NXSI_002_B11_F NXSI (Nsf Xylem Side ... 125 8e-028
gb|CF664533.1|CF664533 RTCNT1_10_A05.g1_A029 Root control P... 55 2e-027
gb|CV035194.1|CV035194 RTNACL1_14_G09.b1_A029 Roots plus ad... 69 3e-026
gb|DR686563.1|DR686563 EST1076641 Normalized pine embryo li... 69 4e-026
gb|CO363981.1|CO363981 RTK1_13_A05.b1_A029 Roots minus pota... 77 1e-025
gb|CO364057.1|CO364057 RTK1_13_A05.g1_A029 Roots minus pota... 77 1e-025
gb|CO166068.1|CO166068 FLD1_59_C07.b1_A029 Root flooded Pin... 77 1e-025
gb|DR048312.1|DR048312 RTBOR1_7_H11.g2_A029 Roots plus adde... 77 1e-025
gb|CO169715.1|CO169715 NDL1_9_C08.b1_A029 Needles control P... 77 1e-025
gb|DR018328.1|DR018328 STRS1_22_D09.b1_A034 Shoot tip pitch... 77 1e-025
gb|CO168780.1|CO168780 NDL1_2_B04.g1_A029 Needles control P... 77 1e-025
gb|CX646563.1|CX646563 COLD1_10_D03.b1_A029 Root cold Pinus... 77 1e-024
gb|CX646646.1|CX646646 COLD1_10_D03.g1_A029 Root cold Pinus... 72 3e-024
gb|DN462318.1|DN462318 EST958117 Sequencing ESTs from loblo... 80 5e-024
gb|DT627145.1|DT627145 EST1160221 Sequencing ESTs from lobl... 80 5e-024
gb|DR052632.1|DR052632 RTCA1_5_G10.g1_A029 Roots minus calc... 69 3e-023
gb|CO363310.1|CO363310 RTK1_9_A05.b1_A029 Roots minus potas... 70 5e-023
gb|CV031472.1|CV031472 RTNACL1_1_F09.g1_A029 Roots plus add... 70 7e-023
gb|CX653275.1|CX653275 COLD1_64_C04.g1_A029 Root cold Pinus... 70 7e-023
gb|DR053226.1|DR053226 RTCA1_9_F09.g1_A029 Roots minus calc... 69 3e-022
gb|DR691555.1|DR691555 EST1081642 Normalized pine embryo li... 77 7e-022
gb|CO361507.1|CO361507 NDL2_5_F07.b1_A029 Needles control 2... 69 1e-021
gb|CO169780.1|CO169780 NDL1_9_C08.g1_A029 Needles control P... 76 2e-021
gb|CF390506.1|CF390506 RTDR2_19_A11.g1_A021 Loblolly pine r... 69 2e-021
gb|DR071813.1|DR071813 RTDK1_22_F04.b1_A029 Roots, dark Pin... 69 2e-021
gb|CF390325.1|CF390325 RTDR2_18_G11.g1_A021 Loblolly pine r... 69 2e-021
gb|DR054787.1|DR054787 RTCA1_19_C08.g1_A029 Roots minus cal... 64 2e-021
gb|CV035259.1|CV035259 RTNACL1_14_G09.g1_A029 Roots plus ad... 69 4e-021
gb|CF477922.1|CF477922 RTWW3_13_F10.g1_A022 Well-watered lo... 69 7e-021
gb|DR089975.1|DR089975 RTAL1_12_A11.b1_A029 Roots plus adde... 52 9e-021
>gb|CV035567.1|CV035567 RTNACL1_41_A02.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_A02_A029 3', mRNA sequence
Length = 837
Score = 142 bits (304), Expect(4) = 6e-060
Identities = 56/97 (57%), Positives = 71/97 (73%)
Frame = +1 / +2
Query: 535 YGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIR 714
+ V +N AP + G+ G QAVA+R+ GTKT YN + G QDTLYDHKGLHYFK C I+
Sbjct: 332 FSVCMQNTAPYPETGSNGCQAVALRISGTKTTFYNYSFYGTQDTLYDHKGLHYFKSCFIQ 511
Query: 715 GSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSKS 825
GS+DFIFG+GRS Y +C I S+ K VA LTAQ+R+ +
Sbjct: 512 GSMDFIFGYGRSLYANCHINSIAKGVAALTAQKRNNA 622
Score = 68.4 bits (143), Expect(4) = 6e-060
Identities = 31/67 (46%), Positives = 40/67 (59%)
Frame = +1 / +3
Query: 349 GAQFREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYF 528
G REK+ + SKPF+TF D + V+ N TAA G D P+ T SAT+AV S+YF
Sbjct: 48 GHFMREKVLVPRSKPFVTFXGDDARQPVITGNVTAAAIGMDALPMKTFRSATVAVNSNYF 227
Query: 529 TAYGVVF 549
AY + F
Sbjct: 228 IAYNIRF 248
Score = 55.6 bits (115), Expect(4) = 6e-060
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +1 / +1
Query: 901 LGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
LGRAWGD SRVV+ YT M + V+P GWD W
Sbjct: 682 LGRAWGDHSRVVFIYTYMDKIVLPEGWDSW 771
Score = 23.1 bits (44), Expect(4) = 6e-060
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1 / +2
Query: 844 TGFSFKNCSIGG 879
+GFSF NC I G
Sbjct: 632 SGFSFLNCLISG 667
>gb|CO363914.1|CO363914 RTK1_12_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_C05_A029 5', mRNA sequence
Length = 850
Score = 153 bits (329), Expect(3) = 3e-047
Identities = 61/154 (39%), Positives = 94/154 (61%)
Frame = +1 / +2
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
++EK+ + + KP+ITF+ + V+ W++ A+ G DG+ + T +A++ V +++FTA
Sbjct: 269 YQEKVLVPLGKPYITFQGAGMERTVIEWHNKASDVGADGQELHTYNTASVTVLANHFTAK 448
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
+ FRN AP PG +G QAV+ R+ G K C G QDTL D G H+FK C ++G
Sbjct: 449 NISFRNSAPAPLPGVEGWQAVSFRISGDKAYFLGCGFYGAQDTLCDDAGRHFFKECFVQG 628
Query: 718 SVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRS 819
S+DFIFG GRS Y C + S+ + + AQ R+
Sbjct: 629 SIDFIFGNGRSIYYKCDLNSIARVFGAIAAQGRT 730
Score = 40.5 bits (82), Expect(3) = 3e-047
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +1 / +2
Query: 247 VVDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
VVD +G G + ++ +A++ IP N +RVI+ ++PG
Sbjct: 161 VVDKNGGGQFGSVQSAVDSIPDGNRERVIIQIRPG 265
Score = 34.1 bits (68), Expect(3) = 3e-047
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1 / +2
Query: 889 GQIYLGRAWGDSSRVVYSYT 948
G +YLGRA G SR+VY+Y+
Sbjct: 785 GPLYLGRAMGQYSRIVYAYS 844
>gb|BX677154.1|BX677154 BX677154 RN Pinus pinaster cDNA clone RN18E03, mRNA sequence
Length = 639
Score = 184 bits (397), Expect = 9e-046
Identities = 75/155 (48%), Positives = 97/155 (62%)
Frame = +1 / +1
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
+ EK+ + +K FIT D ++ W+DTA T G +GKP+GT SAT+AV S YF A
Sbjct: 151 YTEKVNIPSTKAFITLEGDGADSTIIQWSDTAGTPGPNGKPLGTYNSATVAVNSPYFIAR 330
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
+ F+N AP+ PGA G QAVA+R+ G + + C+ G QDTLYDH G HYFK C I G
Sbjct: 331 NITFQNTAPVPPPGAVGRQAVALRITGDTSSFFGCSFLGAQDTLYDHAGRHYFKDCYIEG 510
Query: 718 SVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSK 822
SVDFIFG G S YE C + + +TAQ+R K
Sbjct: 511 SVDFIFGNGLSLYEGCSLHGISDTYGAVTAQKREK 615
>gb|CF670187.1|CF670187 RTCNT1_48_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D05_A029 5', mRNA sequence
Length = 763
Score = 98.7 bits (209), Expect(5) = 2e-044
Identities = 37/69 (53%), Positives = 47/69 (68%)
Frame = +1 / +1
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G+ G QAVAVR+ G + Y C G QDTL+D +G HYF+ C I G+VDFIFG G S+Y
Sbjct: 205 GSVGAQAVAVRVSGDRAAFYRCNFYGAQDTLFDDRGRHYFQDCYIEGTVDFIFGHGLSYY 384
Query: 757 EDCRIESVV 783
E C + S+V
Sbjct: 385 ERCELHSIV 411
Score = 59.3 bits (123), Expect(5) = 2e-044
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1 / +1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIY 1023
G +YLGRAWG SRV++ YT+M + +VP GW W + + Y
Sbjct: 517 GLVYLGRAWGSYSRVIFCYTEMADIIVPEGWSDWNDPSKDQTVYY 651
Score = 39.6 bits (80), Expect(5) = 2e-044
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1 / +1
Query: 1018 IYYGEFKCFGPGADAKKK 1071
+YYGE+KC GPGAD+ K+
Sbjct: 643 VYYGEYKCTGPGADSSKR 696
Score = 32.2 bits (64), Expect(5) = 2e-044
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1 / +1
Query: 364 EKLFLNISKPFITFRSDPKKPAVVVWNDTAATNG 465
EK+ L K ITF+ + WNDTAAT+G
Sbjct: 13 EKVHLGSRKSNITFQGFGGTFTDIAWNDTAATSG 114
Score = 24.4 bits (47), Expect(5) = 2e-044
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / +1
Query: 844 TGFSFKNCSIGG 879
TGFSF +CSI G
Sbjct: 478 TGFSFVDCSITG 513
>gb|DR069400.1|DR069400 RTDK1_7_C03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_C03_A029 3', mRNA sequence
Length = 865
Score = 114 bits (243), Expect(3) = 9e-044
Identities = 48/95 (50%), Positives = 58/95 (61%)
Frame = +1 / +2
Query: 487 TVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDT 666
T SA + + FTA GV F N AP A PGA G QAVA L G Y C G QDT
Sbjct: 23 TADSAAFSSFAPNFTAKGVGFWNTAPPAPPGANGKQAVAALLAGDMAAFYQCGFKGAQDT 202
Query: 667 LYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
L+D++G HYF+ C I GS+DFIFG G+S Y+ C +
Sbjct: 203 LFDYQGRHYFRNCYIEGSIDFIFGHGQSTYKGCEL 307
Score = 65.2 bits (136), Expect(3) = 9e-044
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +1 / +2
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIY 1023
GQ++LGRAWG SRV+++YT M +VP GWD W + + S +Y
Sbjct: 419 GQVFLGRAWGAYSRVIFAYTYMANIIVPQGWDDWGLVERHGSVVY 553
Score = 37.3 bits (75), Expect(3) = 9e-044
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1 / +2
Query: 1018 IYYGEFKCFGPGADAKKKKRVGWALDLTEAQ 1110
+ YGE++C+GPGA+ K + + L TE Q
Sbjct: 545 VVYGEYQCYGPGANNKDRVKWSQKLTTTEVQ 637
>gb|CO163931.1|CO163931 FLD1_44_E09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_44_E09_A029 5', mRNA sequence
Length = 805
Score = 114 bits (244), Expect(4) = 3e-043
Identities = 46/88 (52%), Positives = 56/88 (63%)
Frame = +1 / +2
Query: 559 APLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFG 738
AP+ PGA G QAVA+R+ G + + C+ G QDTLYDH G HYFK C I GSVDFIFG
Sbjct: 2 APVPLPGAVGRQAVALRITGDTSSFFGCSFLGAQDTLYDHAGRHYFKDCYIEGSVDFIFG 181
Query: 739 FGRSFYEDCRIESVVKEVAVLTAQQRSK 822
G S YE C + + +TAQ+R K
Sbjct: 182 NGLSLYEGCSLHGISDTYGAVTAQKREK 265
Score = 50.6 bits (104), Expect(4) = 3e-043
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1 / +2
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIY 1023
G YLGRAWG SRV++ YT M ++P GW K +++ Y
Sbjct: 317 GAFYLGRAWGTFSRVIFGYTYMDAIILPTGWHDMGDPKRQTTVFY 451
Score = 35.9 bits (72), Expect(4) = 3e-043
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1 / +2
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWI 1158
G A RV W+ +LT+ + KPF+ ++ G WI
Sbjct: 470 GPGANFSGRVSWSRELTDDEVKPFLSLSFLDGHNWI 577
Score = 31.3 bits (62), Expect(4) = 3e-043
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1 / +2
Query: 1018 IYYGEFKCFGPGAD 1059
++YG++KC GPGA+
Sbjct: 443 VFYGQYKCIGPGAN 484
>gb|DT631196.1|DT631196 EST1146127 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF609 3' end, mRNA sequence
Length = 854
Score = 154 bits (331), Expect(2) = 9e-043
Identities = 61/154 (39%), Positives = 94/154 (61%)
Frame = +1 / +2
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
++EK+ + + KP+ITF+ + V+ W++ A+ G DG+ + T +A++ V +++FTA
Sbjct: 329 YQEKVLVPLGKPYITFQGAGMERTVIEWHNKASDVGADGQELHTYNTASVTVLANHFTAK 508
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
+ FRN AP PG +G QAV+ R+ G K C G QDTL D G H+FK C ++G
Sbjct: 509 NISFRNSAPAPLPGVEGWQAVSFRISGDKAYFLGCGFYGAQDTLCDDAGRHFFKECFVQG 688
Query: 718 SVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRS 819
S+DFIFG GRS Y C + S+ + + AQ R+
Sbjct: 689 SIDFIFGNGRSIYYKCELNSIARVFGAIAAQGRT 790
Score = 40.5 bits (82), Expect(2) = 9e-043
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +1 / +2
Query: 247 VVDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
VVD +G G + ++ +A++ IP N +RVI+ ++PG
Sbjct: 221 VVDKNGGGQFGSVQSAVDSIPDGNRERVIIQIRPG 325
>gb|CO175253.1|CO175253 NDL1_53_B08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_B08_A029 5', mRNA sequence
Length = 794
Score = 159 bits (342), Expect(2) = 1e-042
Identities = 66/141 (46%), Positives = 84/141 (59%)
Frame = +1 / +3
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
+ EK+ + +K FITF+ V+ W D A T G +G P+GT SAT+AV S+YF A
Sbjct: 351 YTEKVDIPPTKAFITFQGAGADKTVIQWGDNAGTPGSNGHPMGTYFSATVAVNSNYFIAK 530
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
+ F+N P GA G QAVA R+ G C G QDTLYDH G HYFK C I G
Sbjct: 531 NLTFKNTTPSPPSGASGKQAVAFRISGDTASFLGCKFLGAQDTLYDHIGRHYFKDCYIEG 710
Query: 718 SVDFIFGFGRSFYEDCRIESV 780
S+DFIFG G S YE+C + ++
Sbjct: 711 SIDFIFGNGLSLYEECHLHAI 773
Score = 35.0 bits (70), Expect(2) = 1e-042
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1 / +3
Query: 262 GKGDYTNITAALEDIPVSNTKRVILDLKPG 351
G GDYT++ A+ +P+ N RV++ + PG
Sbjct: 258 GVGDYTSVQKAVNALPLINLLRVVIIINPG 347
>gb|DR682995.1|DR682995 EST1073070 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD63 3' end, mRNA sequence
Length = 778
Score = 152 bits (327), Expect(2) = 3e-042
Identities = 60/151 (39%), Positives = 92/151 (60%)
Frame = +1 / +3
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
++EK+ + + KP+ITF+ + V+ W++ A+ G DG+ + T +A++ V +++FTA
Sbjct: 321 YQEKVLVPLGKPYITFQGAGMERTVIEWHNKASDVGADGQELHTYNTASVTVLANHFTAK 500
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
+ FRN AP PG +G QAV+ R+ G K C G QDTL D G H+FK C ++G
Sbjct: 501 NISFRNSAPAPLPGVEGWQAVSFRISGDKAYFLGCGFYGAQDTLCDDAGRHFFKECFVQG 680
Query: 718 SVDFIFGFGRSFYEDCRIESVVKEVAVLTAQ 810
S+DFIFG GRS Y C + S+ + + AQ
Sbjct: 681 SIDFIFGNGRSIYYKCELNSIARVFGAIAAQ 773
Score = 40.5 bits (82), Expect(2) = 3e-042
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +1 / +3
Query: 247 VVDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
VVD +G G + ++ +A++ IP N +RVI+ ++PG
Sbjct: 213 VVDKNGGGQFGSVQSAVDSIPDGNRERVIIQIRPG 317
>dbj|BD236368.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 441
Score = 171 bits (367), Expect = 1e-041
Identities = 70/142 (49%), Positives = 87/142 (61%)
Frame = +1 / +1
Query: 385 SKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAP 564
+K FIT D ++ W+DTA T G +GK +GT SAT+AV S YF A + F N AP
Sbjct: 16 TKAFITLEGDGADSTIIQWSDTAGTPGPNGKALGTYNSATVAVNSPYFIARNITFXNTAP 195
Query: 565 LAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFG 744
+ PGA G QAVA+R+ G + + C+ G QDTLYDH G HYFK C I GSVDFIFG G
Sbjct: 196 VPLPGAVGRQAVALRITGDTSSFFGCSFLGAQDTLYDHAGRHYFKDCYIEGSVDFIFGNG 375
Query: 745 RSFYEDCRIESVVKEVAVLTAQ 810
S YE C + + +TAQ
Sbjct: 376 LSLYEGCSLHGISDTYGAVTAQ 441
>gb|CF670105.1|CF670105 RTCNT1_48_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D05_A029 3', mRNA sequence
Length = 616
Score = 96.4 bits (204), Expect(4) = 2e-039
Identities = 36/66 (54%), Positives = 45/66 (68%)
Frame = +1 / +1
Query: 586 GGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDC 765
G QAVAVR+ G + Y C G QDTL+D +G HYF+ C I G+VDFIFG G S+YE C
Sbjct: 1 GAQAVAVRVSGDRAAFYRCNFYGAQDTLFDDRGRHYFQDCYIEGTVDFIFGHGLSYYERC 180
Query: 766 RIESVV 783
+ S+V
Sbjct: 181 ELHSIV 198
Score = 59.3 bits (123), Expect(4) = 2e-039
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1 / +1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIY 1023
G +YLGRAWG SRV++ YT+M + +VP GW W + + Y
Sbjct: 304 GLVYLGRAWGSYSRVIFCYTEMADIIVPEGWSDWNDPSKDQTVYY 438
Score = 39.6 bits (80), Expect(4) = 2e-039
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1 / +1
Query: 1018 IYYGEFKCFGPGADAKKK 1071
+YYGE+KC GPGAD+ K+
Sbjct: 430 VYYGEYKCTGPGADSSKR 483
Score = 24.4 bits (47), Expect(4) = 2e-039
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / +1
Query: 844 TGFSFKNCSIGG 879
TGFSF +CSI G
Sbjct: 265 TGFSFVDCSITG 300
>gb|CV035637.1|CV035637 RTNACL1_41_A02.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_A02_A029 5', mRNA sequence
Length = 770
Score = 122 bits (260), Expect = 7e-027
Identities = 46/69 (66%), Positives = 54/69 (78%)
Frame = +1 / +1
Query: 550 RNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDF 729
RN AP + G+ GGQAVA+R+ GTK YNC+ G QDTLYDHKGLHYFK C I+GS+DF
Sbjct: 55 RNTAPYPETGSNGGQAVALRISGTKAAFYNCSFYGTQDTLYDHKGLHYFKSCFIQGSMDF 234
Query: 730 IFGFGRSFY 756
IFG+GRS Y
Sbjct: 235 IFGYGRSLY 261
Score = 116 bits (248), Expect(2) = 4e-039
Identities = 44/77 (57%), Positives = 56/77 (72%)
Frame = +1 / +1
Query: 535 YGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIR 714
+ V +N +P + G+ G QAVA+R+ GTKT YN + G DTLYDHKGLHYFK C I+
Sbjct: 535 FSVCMQNTSPYPETGSNGCQAVALRISGTKTTFYNYSFYGTHDTLYDHKGLHYFKSCFIQ 714
Query: 715 GSVDFIFGFGRSFYEDC 765
GS+DFIFG+GRS Y +C
Sbjct: 715 GSMDFIFGYGRSLYANC 765
Score = 66.1 bits (138), Expect(2) = 4e-039
Identities = 30/67 (44%), Positives = 40/67 (59%)
Frame = +1 / +2
Query: 349 GAQFREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYF 528
G REK+ + SKPF+TF D + V+ N TAA G D P+ T +AT+AV S+YF
Sbjct: 251 GHFMREKVLVPRSKPFVTFIGDDARQPVITGNVTAAAIGMDALPMKTFRTATVAVNSNYF 430
Query: 529 TAYGVVF 549
AY + F
Sbjct: 431 IAYNIRF 451
>gb|CO361076.1|CO361076 NDL2_2_C07.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_C07_A029 5', mRNA sequence
Length = 827
Score = 116 bits (249), Expect(3) = 5e-037
Identities = 47/107 (43%), Positives = 65/107 (60%)
Frame = +1 / +2
Query: 499 ATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDH 678
A++ V +++FTA + FRN AP PG +G QAV+ R+ G K C G QDTL D
Sbjct: 2 ASVTVLANHFTAKNISFRNSAPAPLPGVEGWQAVSFRISGDKAYFLGCGFYGAQDTLCDD 181
Query: 679 KGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRS 819
G H+FK C ++GS+DFIFG GRS Y C + S+ + + AQ R+
Sbjct: 182 AGRHFFKECFVQGSIDFIFGNGRSIYYKCDLNSIARVFGAIAAQGRT 322
Score = 42.8 bits (87), Expect(3) = 5e-037
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1 / +2
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQ 1161
G A+ +R+ WA +LT AQA+PF+ Y+ G W++
Sbjct: 524 GPGARAARRISWAHELTPAQAQPFLVKSYINGRHWLE 634
Score = 34.1 bits (68), Expect(3) = 5e-037
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1 / +2
Query: 889 GQIYLGRAWGDSSRVVYSYT 948
G +YLGRA G SR+VY+Y+
Sbjct: 377 GPLYLGRAMGQYSRIVYAYS 436
>dbj|BD236378.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 345
Score = 152 bits (326), Expect = 6e-036
Identities = 61/110 (55%), Positives = 75/110 (68%)
Frame = +1 / +1
Query: 430 VVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVR 609
++ W+DTA T G +GK +GT SAT+AV S YF A + F+N AP+ PGA G QAVA+R
Sbjct: 16 IIQWSDTAGTPGPNGKALGTYNSATVAVNSPYFIARNITFQNTAPVPLPGAVGRQAVALR 195
Query: 610 LFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYE 759
+ G + + C+ G QDTLYDH G HYFK C I GSVDFIFG G S YE
Sbjct: 196 ITGDTSSFFGCSFLGAQDTLYDHAGRHYFKDCYIEGSVDFIFGNGLSLYE 345
>gb|DR069487.1|DR069487 RTDK1_7_C03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_C03_A029 5', mRNA sequence
Length = 867
Score = 114 bits (243), Expect(3) = 4e-033
Identities = 48/95 (50%), Positives = 58/95 (61%)
Frame = +1 / +3
Query: 487 TVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDT 666
T SA + + FTA GV F N AP A PGA G QAVA L G Y C G QDT
Sbjct: 579 TADSAAFSSFAPNFTAKGVGFWNTAPPAPPGANGKQAVAALLAGDMAAFYQCGFKGAQDT 758
Query: 667 LYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
L+D++G HYF+ C I GS+DFIFG G+S Y+ C +
Sbjct: 759 LFDYQGRHYFRNCYIEGSIDFIFGHGQSTYKGCEL 863
Score = 35.0 bits (70), Expect(3) = 4e-033
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1 / +3
Query: 247 VVDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
VVD SG G++ + AA++ +PV N + + + + G
Sbjct: 360 VVDSSGHGNFQTVQAAVDAVPVDNPEWIYIQINEG 464
Score = 31.3 bits (62), Expect(3) = 4e-033
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1 / +3
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNG 465
+REK+ + +KP I F+ ++ ++++W+ A +G
Sbjct: 468 YREKVVIPYNKPNIMFQGSGRESSIIMWDLAADADG 575
>gb|CO165626.1|CO165626 FLD1_55_H02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_55_H02_A029 5', mRNA sequence
Length = 709
Score = 88.6 bits (187), Expect(2) = 3e-032
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = +1 / +1
Query: 535 YGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGC 705
+ V +N P + G+ GGQAVA+ + GTKT YNC+ G QDTLYDHKGLHYFK C
Sbjct: 538 FSVCMQNRTPYPETGSNGGQAVALTISGTKTTFYNCSFYGTQDTLYDHKGLHYFKSC 708
Score = 71.2 bits (149), Expect(2) = 3e-032
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = +1 / +2
Query: 364 EKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGV 543
EK+ + SKPF+TF D + V+ NDTAA G D P+ T SAT+AV SDYF AY +
Sbjct: 269 EKVLVPRSKPFVTFIGDDARQPVITGNDTAAAIGMDALPMKTFRSATVAVNSDYFIAYNI 448
Query: 544 VF 549
F
Sbjct: 449 RF 454
>gb|CR394133.1|CR394133 CR394133 RN Pinus pinaster cDNA clone RN74C6, mRNA sequence
Length = 576
Score = 72.1 bits (151), Expect(4) = 2e-029
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = +1 / +1
Query: 433 VVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKG 588
+ W+DTA T G +GKP+GT SAT+AV S YF A + F+N AP+ PGA G
Sbjct: 1 IQWSDTAGTPGPNGKPLGTYNSATVAVNSPYFIARNITFQNTAPVPPPGAVG 156
Score = 51.5 bits (106), Expect(4) = 2e-029
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +1 / +3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIY 1023
G YLGRAWG SRV+++YT M ++P GW K +++ Y
Sbjct: 222 GAFYLGRAWGSFSRVIFAYTYMDAIILPTGWHDMGDPKRQTTVFY 356
Score = 35.9 bits (72), Expect(4) = 2e-029
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1 / +3
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWI 1158
G A RV W+ +LT+ + KPF+ ++ G WI
Sbjct: 375 GPGANFSGRVSWSRELTDDEVKPFLSLSFLDGHNWI 482
Score = 31.3 bits (62), Expect(4) = 2e-029
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1 / +3
Query: 1018 IYYGEFKCFGPGAD 1059
++YG++KC GPGA+
Sbjct: 348 VFYGQYKCMGPGAN 389
>gb|BF516684.1|BF516684 NXSI_002_B11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_002_B11 5' similar to Arabidopsis thaliana
sequence At5g47500 pectin methylesterase-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 430
Score = 125 bits (267), Expect = 8e-028
Identities = 50/119 (42%), Positives = 71/119 (59%)
Frame = +1 / +2
Query: 463 GKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNC 642
G DG+ + T +A++ V +++FTA + FRN AP PG +G QAV+ R+ G K C
Sbjct: 8 GADGQELHTYNTASVTVLANHFTAKNISFRNSAPAPLPGVEGWQAVSFRISGDKAYFLGC 187
Query: 643 TIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRS 819
G QDTL D G H+FK C ++GS+DFIFG GRS Y C + S+ + + A R+
Sbjct: 188 GFYGAQDTLCDDAGRHFFKECFVQGSIDFIFGNGRSIYYKCELNSIARVFGAIAAXXRT 364
>gb|CF664533.1|CF664533 RTCNT1_10_A05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_10_A05_A029 5', mRNA sequence
Length = 761
Score = 55.1 bits (114), Expect(4) = 2e-027
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +1 / +1
Query: 691 YFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRS 819
+FK C ++GS+DFIFG GRS Y C + S+ + + AQ R+
Sbjct: 115 FFKECFVQGSIDFIFGNGRSIYYKCELNSIARVFGAIAAQGRT 243
Score = 46.9 bits (96), Expect(4) = 2e-027
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = +1 / +3
Query: 583 KGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
+G QAV+ R+ G K C G QDTL D G H+F+G L G
Sbjct: 6 EGWQAVSFRISGDKAYFLGCGFYGAQDTLCDDAGRHFFQGMLRSG 140
Score = 42.8 bits (87), Expect(4) = 2e-027
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1 / +1
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQ 1161
G A+ +R+ WA +LT AQA+PF+ Y+ G W++
Sbjct: 445 GPGARAARRISWAHELTPAQAQPFLVKSYINGRHWLE 555
Score = 34.1 bits (68), Expect(4) = 2e-027
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1 / +1
Query: 889 GQIYLGRAWGDSSRVVYSYT 948
G +YLGRA G SR+VY+Y+
Sbjct: 298 GPLYLGRAMGQYSRIVYAYS 357
>gb|CV035194.1|CV035194 RTNACL1_14_G09.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_14_G09_A029 3', mRNA sequence
Length = 854
Score = 69.3 bits (145), Expect(3) = 3e-026
Identities = 28/61 (45%), Positives = 34/61 (55%)
Frame = +1 / -3
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ + Y+C G QDT Y H G HY + C I G+ DFIFG E C
Sbjct: 525 GQAVAIRVTADRCAFYSCRFLGWQDTAYLHYGKHYLRDCYIEGNCDFIFGNATVLLEHCH 346
Query: 769 I 771
I
Sbjct: 345 I 343
Score = 51.9 bits (107), Expect(3) = 3e-026
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1 / -3
Query: 895 IYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
++LGR W SRVV++YT M + PVGW+ W + E S +Y
Sbjct: 231 MHLGRPWAPFSRVVFAYTWMDACIKPVGWNNWNNPENERSACFY 100
Score = 41.4 bits (84), Expect(3) = 3e-026
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +1 / -3
Query: 262 GKGDYTNITAALEDIPVSNTKRVILDLKPG 351
G+G +TN+ AA++ +P+ N +R+ +D+ PG
Sbjct: 846 GRGHFTNVQAAIDTVPLRNNERITIDVLPG 757
>gb|DR686563.1|DR686563 EST1076641 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABH40 3' end, mRNA sequence
Length = 852
Score = 69.3 bits (145), Expect(3) = 4e-026
Identities = 28/61 (45%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ + Y+C G QDT Y H G HY + C I G+ DFIFG E C
Sbjct: 334 GQAVAIRVTADRCAFYSCRFLGWQDTAYLHYGKHYLRDCYIEGNCDFIFGNATVLLEHCH 513
Query: 769 I 771
I
Sbjct: 514 I 516
Score = 51.9 bits (107), Expect(3) = 4e-026
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1 / +1
Query: 895 IYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
++LGR W SRVV++YT M + PVGW+ W + E S +Y
Sbjct: 628 MHLGRPWAPFSRVVFAYTWMDACIKPVGWNNWNNPENERSACFY 759
Score = 40.9 bits (83), Expect(3) = 4e-026
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1 / +1
Query: 250 VDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
V G G +TN+ AA++ +P+ N +R+ +D+ PG
Sbjct: 1 VAQDGSGHFTNVQAAIDTVPLRNNERITIDVLPG 102
>gb|CO363981.1|CO363981 RTK1_13_A05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_A05_A029 3', mRNA sequence
Length = 903
Score = 77.1 bits (162), Expect(3) = 1e-025
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = +1 / +1
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ G + Y C G QDT Y H G HY + C I GSVDFIFG + E C
Sbjct: 118 GQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCH 297
Query: 769 I 771
I
Sbjct: 298 I 300
Score = 52.8 bits (109), Expect(3) = 1e-025
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1 / +1
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
G +G YLGR W +RVVY+YT M + P GW W + E + +Y
Sbjct: 391 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFY 543
Score = 25.4 bits (49), Expect(3) = 1e-025
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 1030 EFKCFGPGAD 1059
E+KCFGPG++
Sbjct: 544 EYKCFGPGSN 573
>gb|CO364057.1|CO364057 RTK1_13_A05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_A05_A029 5', mRNA sequence
Length = 879
Score = 77.1 bits (162), Expect(3) = 1e-025
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = +1 / +2
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ G + Y C G QDT Y H G HY + C I GSVDFIFG + E C
Sbjct: 371 GQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCH 550
Query: 769 I 771
I
Sbjct: 551 I 553
Score = 52.8 bits (109), Expect(3) = 1e-025
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1 / +2
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
G +G YLGR W +RVVY+YT M + P GW W + E + +Y
Sbjct: 644 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFY 796
Score = 25.4 bits (49), Expect(3) = 1e-025
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 1030 EFKCFGPGAD 1059
E+KCFGPG++
Sbjct: 797 EYKCFGPGSN 826
>gb|CO166068.1|CO166068 FLD1_59_C07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_C07_A029 3', mRNA sequence
Length = 858
Score = 77.1 bits (162), Expect(3) = 1e-025
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = +1 / +3
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ G + Y C G QDT Y H G HY + C I GSVDFIFG + E C
Sbjct: 72 GQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCH 251
Query: 769 I 771
I
Sbjct: 252 I 254
Score = 52.8 bits (109), Expect(3) = 1e-025
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1 / +3
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
G +G YLGR W +RVVY+YT M + P GW W + E + +Y
Sbjct: 345 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFY 497
Score = 25.4 bits (49), Expect(3) = 1e-025
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 1030 EFKCFGPGAD 1059
E+KCFGPG++
Sbjct: 498 EYKCFGPGSN 527
>gb|DR048312.1|DR048312 RTBOR1_7_H11.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_7_H11_A029 5', mRNA sequence
Length = 813
Score = 77.1 bits (162), Expect(3) = 1e-025
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = +1 / +3
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ G + Y C G QDT Y H G HY + C I GSVDFIFG + E C
Sbjct: 99 GQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCH 278
Query: 769 I 771
I
Sbjct: 279 I 281
Score = 52.8 bits (109), Expect(3) = 1e-025
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1 / +3
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
G +G YLGR W +RVVY+YT M + P GW W + E + +Y
Sbjct: 372 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFY 524
Score = 25.4 bits (49), Expect(3) = 1e-025
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 1030 EFKCFGPGAD 1059
E+KCFGPG++
Sbjct: 525 EYKCFGPGSN 554
>gb|CO169715.1|CO169715 NDL1_9_C08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_C08_A029 3', mRNA sequence
Length = 792
Score = 77.1 bits (162), Expect(3) = 1e-025
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = +1 / +1
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ G + Y C G QDT Y H G HY + C I GSVDFIFG + E C
Sbjct: 4 GQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCH 183
Query: 769 I 771
I
Sbjct: 184 I 186
Score = 52.8 bits (109), Expect(3) = 1e-025
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1 / +1
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
G +G YLGR W +RVVY+YT M + P GW W + E + +Y
Sbjct: 277 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFY 429
Score = 25.4 bits (49), Expect(3) = 1e-025
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 1030 EFKCFGPGAD 1059
E+KCFGPG++
Sbjct: 430 EYKCFGPGSN 459
>gb|DR018328.1|DR018328 STRS1_22_D09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_22_D09_A034 3', mRNA sequence
Length = 756
Score = 77.1 bits (162), Expect(3) = 1e-025
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = +1 / -2
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ G + Y C G QDT Y H G HY + C I GSVDFIFG + E C
Sbjct: 548 GQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCH 369
Query: 769 I 771
I
Sbjct: 368 I 366
Score = 52.8 bits (109), Expect(3) = 1e-025
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1 / -2
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
G +G YLGR W +RVVY+YT M + P GW W + E + +Y
Sbjct: 275 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFY 123
Score = 25.4 bits (49), Expect(3) = 1e-025
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / -2
Query: 1030 EFKCFGPGAD 1059
E+KCFGPG++
Sbjct: 122 EYKCFGPGSN 93
>gb|CO168780.1|CO168780 NDL1_2_B04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_2_B04_A029 5', mRNA sequence
Length = 723
Score = 77.1 bits (162), Expect(3) = 1e-025
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = +1 / +3
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ G + Y C G QDT Y H G HY + C I GSVDFIFG + E C
Sbjct: 105 GQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCH 284
Query: 769 I 771
I
Sbjct: 285 I 287
Score = 52.8 bits (109), Expect(3) = 1e-025
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1 / +3
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
G +G YLGR W +RVVY+YT M + P GW W + E + +Y
Sbjct: 378 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFY 530
Score = 25.4 bits (49), Expect(3) = 1e-025
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 1030 EFKCFGPGAD 1059
E+KCFGPG++
Sbjct: 531 EYKCFGPGSN 560
>gb|CX646563.1|CX646563 COLD1_10_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_D03_A029 3', mRNA sequence
Length = 888
Score = 77.1 bits (162), Expect(3) = 1e-024
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = +1 / -1
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ G + Y C G QDT Y H G HY + C I GSVDFIFG + E C
Sbjct: 489 GQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCH 310
Query: 769 I 771
I
Sbjct: 309 I 307
Score = 52.8 bits (109), Expect(3) = 1e-024
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1 / -1
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
G +G YLGR W +RVVY+YT M + P GW W + E + +Y
Sbjct: 216 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFY 64
Score = 22.1 bits (42), Expect(3) = 1e-024
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +1 / -1
Query: 1030 EFKCFGPGAD 1059
E +CFGPG++
Sbjct: 63 EIQCFGPGSN 34
>gb|CX646646.1|CX646646 COLD1_10_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_D03_A029 5', mRNA sequence
Length = 695
Score = 72.1 bits (151), Expect(3) = 3e-024
Identities = 29/59 (49%), Positives = 34/59 (57%)
Frame = +1 / -3
Query: 595 AVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
AVA+R+ G + Y C G QDT Y H G HY + C I GSVDFIFG + E C I
Sbjct: 693 AVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCHI 517
Score = 52.8 bits (109), Expect(3) = 3e-024
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1 / -3
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
G +G YLGR W +RVVY+YT M + P GW W + E + +Y
Sbjct: 426 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFY 274
Score = 25.4 bits (49), Expect(3) = 3e-024
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / -3
Query: 1030 EFKCFGPGAD 1059
E+KCFGPG++
Sbjct: 273 EYKCFGPGSN 244
>gb|DN462318.1|DN462318 EST958117 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIK88 5' end, mRNA sequence
Length = 707
Score = 79.9 bits (168), Expect(3) = 5e-024
Identities = 34/86 (39%), Positives = 49/86 (56%)
Frame = +1 / +2
Query: 592 QAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
QAVA+R+ ++ YNC G QDTLY H Y++ C I G+VDFIFG + +E+C+I
Sbjct: 59 QAVALRVSSDRSAFYNCAFLGNQDTLYAHTLRQYYRNCRIEGNVDFIFGNAAAIFENCQI 238
Query: 772 ESVVKEVAVLTAQQRSKSIEGAIDTG 849
++ V S + +G ID G
Sbjct: 239 LVRPRQQNVSNGASDSVTAQGRIDPG 316
Score = 40.5 bits (82), Expect(3) = 5e-024
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1 / +2
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W SRV++ + +GE + P GW W
Sbjct: 410 YLGRPWKSYSRVIFMNSYLGEIIEPEGWMPW 502
Score = 29.5 bits (58), Expect(3) = 5e-024
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1 / +2
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE+K +GPGA
Sbjct: 527 LYYGEYKNYGPGA 565
>gb|DT627145.1|DT627145 EST1160221 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAV42 5' end, mRNA sequence
Length = 707
Score = 79.9 bits (168), Expect(3) = 5e-024
Identities = 34/86 (39%), Positives = 49/86 (56%)
Frame = +1 / +2
Query: 592 QAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
QAVA+R+ ++ YNC G QDTLY H Y++ C I G+VDFIFG + +E+C+I
Sbjct: 59 QAVALRVSSDRSAFYNCAFLGNQDTLYAHTLRQYYRNCRIEGNVDFIFGNAAAIFENCQI 238
Query: 772 ESVVKEVAVLTAQQRSKSIEGAIDTG 849
++ V S + +G ID G
Sbjct: 239 LVRPRQQNVSNGASDSVTAQGRIDPG 316
Score = 40.5 bits (82), Expect(3) = 5e-024
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1 / +2
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W SRV++ + +GE + P GW W
Sbjct: 410 YLGRPWKSYSRVIFMNSYLGEIIEPEGWMPW 502
Score = 29.5 bits (58), Expect(3) = 5e-024
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1 / +2
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE+K +GPGA
Sbjct: 527 LYYGEYKNYGPGA 565
>gb|DR052632.1|DR052632 RTCA1_5_G10.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_G10_A029 5', mRNA sequence
Length = 774
Score = 68.9 bits (144), Expect(4) = 3e-023
Identities = 32/80 (40%), Positives = 44/80 (55%)
Frame = +1 / +3
Query: 532 AYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLI 711
A G + R+ A G QAVA+R+ + YNC G QDTLY H +++ C I
Sbjct: 192 ADGFLARDIAFENAAGPGSHQAVALRVDSDLSAFYNCAFLGHQDTLYTHTLRQFYRNCRI 371
Query: 712 RGSVDFIFGFGRSFYEDCRI 771
G+VDFIFG + +E+C I
Sbjct: 372 EGTVDFIFGNSAAIFENCLI 431
Score = 41.8 bits (85), Expect(4) = 3e-023
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1 / +3
Query: 892 QIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQ 993
++YLGR W SRV++ + +GE + P GW W+
Sbjct: 597 KVYLGRPWKMYSRVIFINSYLGELITPKGWMPWK 698
Score = 27.6 bits (54), Expect(4) = 3e-023
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE++ +GPGA
Sbjct: 720 LYYGEYQNYGPGA 758
Score = 25.8 bits (50), Expect(4) = 3e-023
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1 / +3
Query: 826 IEGAIDTGFSFKNCSIGG 879
I+ A TGF F NC+I G
Sbjct: 498 IDPAQPTGFVFHNCTING 551
>gb|CO363310.1|CO363310 RTK1_9_A05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_9_A05_A029 3', mRNA sequence
Length = 885
Score = 69.8 bits (146), Expect(4) = 5e-023
Identities = 31/84 (36%), Positives = 46/84 (54%)
Frame = +1 / +3
Query: 592 QAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
QAVA+R+ + Y+C + G QDTLY H Y++ C I G+VDFIFG + +E+C I
Sbjct: 63 QAVALRVDSDLSAFYSCALLGHQDTLYSHTLRQYYRNCRIEGTVDFIFGNSAAVFENCVI 242
Query: 772 ESVVKEVAVLTAQQRSKSIEGAID 843
++V + + G ID
Sbjct: 243 LVRPRQVKSSQGSSDTVTAHGRID 314
Score = 39.6 bits (80), Expect(4) = 5e-023
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1 / +3
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W SRV+++ + +GE + P GW W
Sbjct: 414 YLGRPWKMYSRVIFTNSYLGELISPEGWLPW 506
Score = 27.6 bits (54), Expect(4) = 5e-023
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE++ +GPGA
Sbjct: 531 LYYGEYQNYGPGA 569
Score = 26.3 bits (51), Expect(4) = 5e-023
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / +3
Query: 826 IEGAIDTGFSFKNCSIGGVK 885
I+ A TGF F NC+I G +
Sbjct: 309 IDPAQPTGFVFHNCTINGTE 368
>gb|CV031472.1|CV031472 RTNACL1_1_F09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_1_F09_A029 5', mRNA sequence
Length = 839
Score = 69.8 bits (146), Expect(4) = 7e-023
Identities = 31/84 (36%), Positives = 46/84 (54%)
Frame = +1 / +2
Query: 592 QAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
QAVA+R+ + Y+C + G QDTLY H Y++ C I G+VDFIFG + +E+C I
Sbjct: 92 QAVALRVDSDLSAFYSCALLGHQDTLYSHTLRQYYRNCRIEGTVDFIFGNSAAVFENCVI 271
Query: 772 ESVVKEVAVLTAQQRSKSIEGAID 843
++V + + G ID
Sbjct: 272 LVRPRQVKSSQGSSDTVTAHGRID 343
Score = 39.1 bits (79), Expect(4) = 7e-023
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1 / +2
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W SRV+++ + +GE + P GW W
Sbjct: 443 YLGRPWKMYSRVIFTNSYLGELINPEGWLPW 535
Score = 27.6 bits (54), Expect(4) = 7e-023
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / +2
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE++ +GPGA
Sbjct: 560 LYYGEYQNYGPGA 598
Score = 26.3 bits (51), Expect(4) = 7e-023
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / +2
Query: 826 IEGAIDTGFSFKNCSIGGVK 885
I+ A TGF F NC+I G +
Sbjct: 338 IDPAQPTGFVFHNCTINGTE 397
>gb|CX653275.1|CX653275 COLD1_64_C04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_C04_A029 5', mRNA sequence
Length = 782
Score = 69.8 bits (146), Expect(4) = 7e-023
Identities = 31/84 (36%), Positives = 46/84 (54%)
Frame = +1 / +1
Query: 592 QAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
QAVA+R+ + Y+C + G QDTLY H Y++ C I G+VDFIFG + +E+C I
Sbjct: 118 QAVALRVDSDLSAFYSCALLGHQDTLYSHTLRQYYRNCRIEGTVDFIFGNSAAVFENCVI 297
Query: 772 ESVVKEVAVLTAQQRSKSIEGAID 843
++V + + G ID
Sbjct: 298 LVRPRQVKSSQGSSDTVTAHGRID 369
Score = 39.1 bits (79), Expect(4) = 7e-023
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1 / +1
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W SRV+++ + +GE + P GW W
Sbjct: 469 YLGRPWKMYSRVIFTNSYLGELINPEGWLPW 561
Score = 27.6 bits (54), Expect(4) = 7e-023
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / +1
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE++ +GPGA
Sbjct: 586 LYYGEYQNYGPGA 624
Score = 26.3 bits (51), Expect(4) = 7e-023
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / +1
Query: 826 IEGAIDTGFSFKNCSIGGVK 885
I+ A TGF F NC+I G +
Sbjct: 364 IDPAQPTGFVFHNCTINGTE 423
>gb|DR053226.1|DR053226 RTCA1_9_F09.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_F09_A029 5', mRNA sequence
Length = 685
Score = 68.9 bits (144), Expect(4) = 3e-022
Identities = 31/89 (34%), Positives = 46/89 (51%)
Frame = +1 / +3
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G QAVA+R+ + Y C + G QDTLY H +++ C I G+VDFIFG + +
Sbjct: 27 GPGSHQAVALRVDSDLSAFYGCALLGNQDTLYSHTLRQFYRNCKIEGTVDFIFGNSAAVF 206
Query: 757 EDCRIESVVKEVAVLTAQQRSKSIEGAID 843
E+C I ++V + + G ID
Sbjct: 207 ENCVILVRPRQVKSSQGSSDAVTAHGRID 293
Score = 37.7 bits (76), Expect(4) = 3e-022
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1 / +3
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W SRV+ + + +GE + P GW W
Sbjct: 393 YLGRPWKMYSRVIITNSYLGEIISPEGWLPW 485
Score = 27.6 bits (54), Expect(4) = 3e-022
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE++ +GPGA
Sbjct: 510 LYYGEYQNYGPGA 548
Score = 26.3 bits (51), Expect(4) = 3e-022
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / +3
Query: 826 IEGAIDTGFSFKNCSIGGVK 885
I+ A TGF F NC+I G +
Sbjct: 288 IDPAQPTGFVFHNCTINGTE 347
>gb|DR691555.1|DR691555 EST1081642 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD991 3' end, mRNA sequence
Length = 757
Score = 77.1 bits (162), Expect(2) = 7e-022
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = +1 / +3
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ G + Y C G QDT Y H G HY + C I GSVDFIFG + E C
Sbjct: 363 GQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCH 542
Query: 769 I 771
I
Sbjct: 543 I 545
Score = 47.8 bits (98), Expect(2) = 7e-022
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1 / +3
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +G YLGR W +RVVY+YT M + P GW W
Sbjct: 636 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNW 752
>gb|CO361507.1|CO361507 NDL2_5_F07.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_5_F07_A029 3', mRNA sequence
Length = 906
Score = 68.9 bits (144), Expect(4) = 1e-021
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +1 / -3
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G QAVAVR+ + YNC G QDTLY H +++ C I G+VDFIFG + +
Sbjct: 868 GPGSQQAVAVRVDSDHSAFYNCAFLGHQDTLYTHILRQFYRNCRIEGTVDFIFGDSAAIF 689
Query: 757 EDCRI 771
E+C +
Sbjct: 688 ENCLV 674
Score = 37.7 bits (76), Expect(4) = 1e-021
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1 / -3
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W SR ++ + +GE + P GW W
Sbjct: 502 YLGRPWKMYSRAIFINSYLGEAISPEGWMPW 410
Score = 27.6 bits (54), Expect(4) = 1e-021
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE++ +GPGA
Sbjct: 385 LYYGEYQNYGPGA 347
Score = 24.4 bits (47), Expect(4) = 1e-021
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1 / -3
Query: 844 TGFSFKNCSIGGVK 885
TGF F NC+I G +
Sbjct: 589 TGFVFHNCTINGTE 548
>gb|CO169780.1|CO169780 NDL1_9_C08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_C08_A029 5', mRNA sequence
Length = 656
Score = 75.8 bits (159), Expect(2) = 2e-021
Identities = 31/61 (50%), Positives = 35/61 (57%)
Frame = +1 / +3
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ G Y C G QDT Y H G HY + C I GSVDFIFG + E C
Sbjct: 258 GQAVAIRVTGDSIVFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCH 437
Query: 769 I 771
I
Sbjct: 438 I 440
Score = 47.8 bits (98), Expect(2) = 2e-021
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1 / +3
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +G YLGR W +RVVY+YT M + P GW W
Sbjct: 531 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNW 647
>gb|CF390506.1|CF390506 RTDR2_19_A11.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_A11_A021 5', mRNA
sequence
Length = 806
Score = 68.9 bits (144), Expect(4) = 2e-021
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +1 / +2
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G QAVAVR+ + YNC G QDTLY H +++ C I G+VDFIFG + +
Sbjct: 56 GPGSQQAVAVRVDSDHSAFYNCAFLGHQDTLYTHILRQFYRNCRIEGTVDFIFGDSAAIF 235
Query: 757 EDCRI 771
E+C +
Sbjct: 236 ENCLV 250
Score = 37.7 bits (76), Expect(4) = 2e-021
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1 / +2
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W SR ++ + +GE + P GW W
Sbjct: 422 YLGRPWKMYSRAIFINSYLGEAISPEGWMPW 514
Score = 26.7 bits (52), Expect(4) = 2e-021
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1 / +2
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE+ +GPGA
Sbjct: 539 LYYGEYHNYGPGA 577
Score = 24.4 bits (47), Expect(4) = 2e-021
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1 / +2
Query: 844 TGFSFKNCSIGGVK 885
TGF F NC+I G +
Sbjct: 335 TGFVFHNCTINGTE 376
>gb|DR071813.1|DR071813 RTDK1_22_F04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_F04_A029 3', mRNA sequence
Length = 734
Score = 68.9 bits (144), Expect(4) = 2e-021
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +1 / +2
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G QAVAVR+ + YNC G QDTLY H +++ C I G+VDFIFG + +
Sbjct: 71 GPGSQQAVAVRVDSDHSAFYNCAFLGHQDTLYTHILRQFYRNCRIEGTVDFIFGDSAAIF 250
Query: 757 EDCRI 771
E+C +
Sbjct: 251 ENCLV 265
Score = 37.7 bits (76), Expect(4) = 2e-021
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1 / +2
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W SR ++ + +GE + P GW W
Sbjct: 437 YLGRPWKMYSRAIFINSYLGEAISPEGWMPW 529
Score = 26.7 bits (52), Expect(4) = 2e-021
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1 / +2
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE+ +GPGA
Sbjct: 554 LYYGEYHNYGPGA 592
Score = 24.4 bits (47), Expect(4) = 2e-021
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1 / +2
Query: 844 TGFSFKNCSIGGVK 885
TGF F NC+I G +
Sbjct: 350 TGFVFHNCTINGTE 391
>gb|CF390325.1|CF390325 RTDR2_18_G11.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_18_G11_A021 5', mRNA
sequence
Length = 674
Score = 68.9 bits (144), Expect(4) = 2e-021
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +1 / +1
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G QAVAVR+ + YNC G QDTLY H +++ C I G+VDFIFG + +
Sbjct: 73 GPGSQQAVAVRVDSDHSAFYNCAFLGHQDTLYTHILRQFYRNCRIEGTVDFIFGDSAAIF 252
Query: 757 EDCRI 771
E+C +
Sbjct: 253 ENCLV 267
Score = 37.7 bits (76), Expect(4) = 2e-021
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1 / +1
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W SR ++ + +GE + P GW W
Sbjct: 439 YLGRPWKMYSRAIFINSYLGEAISPEGWMPW 531
Score = 26.7 bits (52), Expect(4) = 2e-021
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1 / +1
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE+ +GPGA
Sbjct: 556 LYYGEYHNYGPGA 594
Score = 24.4 bits (47), Expect(4) = 2e-021
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1 / +1
Query: 844 TGFSFKNCSIGGVK 885
TGF F NC+I G +
Sbjct: 352 TGFVFHNCTINGTE 393
>gb|DR054787.1|DR054787 RTCA1_19_C08.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C08_A029 5', mRNA sequence
Length = 830
Score = 64.3 bits (134), Expect(4) = 2e-021
Identities = 29/81 (35%), Positives = 42/81 (51%)
Frame = +1 / +1
Query: 529 TAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCL 708
T G + R+ G QAVA+R+ + Y C+ G QDTLY H +++ C
Sbjct: 277 TGNGFIARDMTFENTAGPAKHQAVALRVGSDLSTFYRCSFKGYQDTLYAHSFRQFYRECN 456
Query: 709 IRGSVDFIFGFGRSFYEDCRI 771
I G+VDFIFG ++DC +
Sbjct: 457 IYGTVDFIFGNSAVVFQDCNL 519
Score = 39.6 bits (80), Expect(4) = 2e-021
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1 / +1
Query: 892 QIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
+ YLGR W + SR V+ + +G+ + P GW W
Sbjct: 661 EAYLGRPWKEYSRTVFMQSFLGDLIQPAGWLEW 759
Score = 38.6 bits (78), Expect(4) = 2e-021
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1 / +1
Query: 235 KVTYVVDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
K VV G G+YTNIT A+E P + R ++ +K G
Sbjct: 19 KPNVVVAKDGSGNYTNITEAVEKAPEKSQTRYVIHIKAG 135
Score = 21.7 bits (41), Expect(4) = 2e-021
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 1012 SGIYYGEFKCFGPGA 1056
S +YYG + GPGA
Sbjct: 778 STLYYGGYMNRGPGA 822
>gb|CV035259.1|CV035259 RTNACL1_14_G09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_14_G09_A029 5', mRNA sequence
Length = 818
Score = 69.3 bits (145), Expect(3) = 4e-021
Identities = 28/61 (45%), Positives = 34/61 (55%)
Frame = +1 / -2
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVA+R+ + Y+C G QDT Y H G HY + C I G+ DFIFG E C
Sbjct: 799 GQAVAIRVTADRCAFYSCRFLGWQDTAYLHYGKHYLRDCYIEGNCDFIFGNATVLLEHCH 620
Query: 769 I 771
I
Sbjct: 619 I 617
Score = 51.9 bits (107), Expect(3) = 4e-021
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1 / -2
Query: 895 IYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
++LGR W SRVV++YT M + PVGW+ W + E S +Y
Sbjct: 505 MHLGRPWAPFSRVVFAYTWMDACIKPVGWNNWNNPENERSACFY 374
Score = 24.0 bits (46), Expect(3) = 4e-021
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1 / -2
Query: 1030 EFKCFGPGADAKKK 1071
E++C GPG+D K+
Sbjct: 373 EYRCSGPGSDPCKR 332
>gb|CF477922.1|CF477922 RTWW3_13_F10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_F10_A022 5', mRNA sequence
Length = 664
Score = 68.9 bits (144), Expect(4) = 7e-021
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +1 / +1
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G QAVAVR+ + YNC G QDTLY H +++ C I G+VDFIFG + +
Sbjct: 112 GPGSQQAVAVRVDSDHSAFYNCAFLGHQDTLYTHILRQFYRNCRIEGTVDFIFGDSAAIF 291
Query: 757 EDCRI 771
E+C +
Sbjct: 292 ENCLV 306
Score = 35.0 bits (70), Expect(4) = 7e-021
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1 / +1
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGW 981
YLGR W SR ++ + +GE + P GW
Sbjct: 478 YLGRPWKMYSRAIFINSYLGEAISPEGW 561
Score = 27.6 bits (54), Expect(4) = 7e-021
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / +1
Query: 1018 IYYGEFKCFGPGA 1056
+YYGE++ +GPGA
Sbjct: 595 LYYGEYQNYGPGA 633
Score = 24.4 bits (47), Expect(4) = 7e-021
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1 / +1
Query: 844 TGFSFKNCSIGGVK 885
TGF F NC+I G +
Sbjct: 391 TGFVFHNCTINGTE 432
>gb|DR089975.1|DR089975 RTAL1_12_A11.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_12_A11_A029 3', mRNA sequence
Length = 800
Score = 51.9 bits (107), Expect(4) = 9e-021
Identities = 20/37 (54%), Positives = 22/37 (59%)
Frame = +1 / +3
Query: 661 DTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRI 771
DT Y H G HY + C I GSVDFIFG + E C I
Sbjct: 141 DTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCHI 251
Score = 51.5 bits (106), Expect(4) = 9e-021
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +1 / +3
Query: 874 GGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYY 1026
G +G YLGR W +RVVY+YT M + P GW W + E +Y
Sbjct: 342 GNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGIASFY 494
Score = 26.7 bits (52), Expect(4) = 9e-021
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 589 GQAVAVRLFGTKTQIYNCTIDG 654
GQAVA+R+ G + Y C G
Sbjct: 70 GQAVAIRVTGDRCAFYTCRFLG 135
Score = 25.4 bits (49), Expect(4) = 9e-021
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 1030 EFKCFGPGAD 1059
E+KCFGPG++
Sbjct: 495 EYKCFGPGSN 524
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 466,328,712
Number of Sequences: 355925
Number of extensions: 6321279
Number of successful extensions: 43281
Number of sequences better than 1.0e-020: 51
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 20324613690
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)