TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115079.2.1
         (636 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|U90341.1|PRU90341  Pinus radiata chalcone synthase homolo...   170   8e-042
gb|AA220870.1|AA220870  9 Pinus radiata post meiotic male co...   129   2e-029
gb|BG318884.1|BG318884  NXPV_021_B03_F NXPV (Nsf Xylem Plani...   126   2e-028

>gb|U90341.1|PRU90341 Pinus radiata chalcone synthase homolog PrChS1 mRNA, complete cds
          Length = 1468

 Score =  170 bits (366), Expect = 8e-042
 Identities = 71/112 (63%), Positives = 84/112 (75%)
 Frame = -2 / +3

                                                                        
Query: 635  LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
            LP+ IE  IEGFCR LM++ G+ D+N++FW VHPGGPAILNRLE  L L PEKL  SR+A
Sbjct: 867  LPQIIEDHIEGFCRKLMDKAGVDDYNELFWGVHPGGPAILNRLEKKLSLGPEKLYYSRQA 1046

                                                                
Query: 455  LMNYGNVSSNTIFYVLEYLRDELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
            L +YGN SSNTI YVL+ +R        S EWGLILAFGPGITFEG+L R +
Sbjct: 1047 LADYGNASSNTIVYVLDAMRQLKGGEKQSPEWGLILAFGPGITFEGILARSL 1202



>gb|AA220870.1|AA220870 9 Pinus radiata post meiotic male cone Pinus radiata cDNA clone
           Prmc192 3' similar to chalcone synthase, mRNA sequence
          Length = 571

 Score =  129 bits (276), Expect = 2e-029
 Identities = 55/87 (63%), Positives = 63/87 (72%)
 Frame = -2 / -2

                                                                       
Query: 560 NDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKALMNYGNVSSNTIFYVLEYLRDELKK 381
           N++FW VHPGGPAILNRLE    L PEKL  SR+AL +YGN SSNTI YVL+ +R     
Sbjct: 528 NELFWGVHPGGPAILNRLEKKXSLGPEKLYYSRQALADYGNASSNTIVYVLDAMRQLKGG 349

                                      
Query: 380 GAISEEWGLILAFGPGITFEGLLVRGV 300
              S EWGLI AFGPGITFEG+L R +
Sbjct: 348 EKQSPEWGLIFAFGPGITFEGILARSL 268



>gb|BG318884.1|BG318884 NXPV_021_B03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_021_B03 5' similar to Arabidopsis
           thaliana sequence At4g34850 chalcone synthase - like
           protein see http://mips.gsf.de/proj/thal/db/index.html,
           mRNA sequence
          Length = 481

 Score =  126 bits (269), Expect = 2e-028
 Identities = 55/83 (66%), Positives = 61/83 (73%)
 Frame = -2 / +2

                                                                       
Query: 548 WAVHPGGPAILNRLEFCLKLQPEKLKISRKALMNYGNVSSNTIFYVLEYLRDELKKGAIS 369
           W VHPGGPAILNRLE  L L PEKL  SR+AL +YGN SSNTI YVL+ +R        S
Sbjct: 2   WGVHPGGPAILNRLEKKLSLGPEKLYYSRQALADYGNASSNTIVYVLDAMRQLKGGEKQS 181

                                  
Query: 368 EEWGLILAFGPGITFEGLLVRGV 300
            EWGLILAFGPGITFEG+L R +
Sbjct: 182 PEWGLILAFGPGITFEGILARSL 250



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 361,987,192
Number of Sequences: 355925
Number of extensions: 5142630
Number of successful extensions: 46842
Number of sequences better than 1.0e-020: 5
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8683771200
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)