TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX682384.2|BX682384 BX682384 Pinus pinaster differenciat... 221 6e-059
gb|BX252725.1|BX252725 BX252725 Pinus pinaster differenciat... 199 1e-050
gb|CF394813.1|CF394813 RTDS2_7_D09.g1_A021 Drought-stressed... 174 6e-045
gb|BX251001.1|BX251001 BX251001 Pinus pinaster differenciat... 141 4e-035
>gb|BX682384.2|BX682384 BX682384 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 115H04 similar to seedling lethal mutation,
mRNA sequence
Length = 677
Score = 221 bits (476), Expect(2) = 6e-059
Identities = 86/117 (73%), Positives = 103/117 (88%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFML+FDR+AFIIASTA+EEEM WY +
Sbjct: 31 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRSAFIIASTATEEEMRHWYRD 210
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKE 353
R+VWTDK LNLKL+RKG+LTRIY PM IVQ L+E+GVF++A+A+G + +S ++
Sbjct: 211 RIVWTDKDLNLKLMRKGLLTRIYAPMVIVQGLKEAGVFSNALASGHAVLKKSMSREQ 381
Score = 139 bits (299), Expect = 2e-032
Identities = 68/105 (64%), Positives = 78/105 (74%)
Frame = -2 / -1
Query: 316 PAAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDA 137
P A A +KTP S + *T+ IG Y+RV+ PFL SFKF LSV T RS YQ ISSS+AV+A
Sbjct: 344 PDAKALLKTPASFKP*TMTIGAYIRVNRPFLMSFKFKSLSVQTMRSRYQWRISSSVAVEA 165
Query: 136 IIKAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
I+ A S S+MKHLLTSSFVGL PQRS L+VKS N V V*C TAA
Sbjct: 164 IMNAERSNSSMKHLLTSSFVGLQPQRSLLEVKSLNFV*V*CNTAA 30
Score = 29.5 bits (58), Expect(2) = 6e-059
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3 / +1
Query: 480 VTAVPPLSPPSLD 518
V AVPPL+PPSLD
Sbjct: 544 VMAVPPLAPPSLD 582
>gb|BX252725.1|BX252725 BX252725 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069G07, mRNA sequence
Length = 681
Score = 199 bits (430), Expect = 1e-050
Identities = 78/96 (81%), Positives = 88/96 (91%)
Frame = +3 / +3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFML+FDR+AFIIASTA+EEEM WY +
Sbjct: 393 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRSAFIIASTATEEEMRHWYRD 572
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESG 290
R+VWT + LNLKL+RKG+LTRIY PM IVQ L+E+G
Sbjct: 573 RIVWTXQDLNLKLMRKGLLTRIYAPMVIVQGLKEAG 680
Score = 128 bits (274), Expect = 5e-029
Identities = 62/96 (64%), Positives = 71/96 (73%)
Frame = -2 / -3
Query: 289 PDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAIIKAALSKS 110
P S + *T+ IG Y+RV+ PFL SFKF SV T RS YQ ISSS+AV+AI+ A S S
Sbjct: 679 PASFKP*TMTIGAYIRVNRPFLMSFKFKSXSVQTMRSRYQWRISSSVAVEAIMNAERSNS 500
Query: 109 NMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
+MKHLLTSSFVGL PQRS L+VKS N V V*C TAA
Sbjct: 499 SMKHLLTSSFVGLQPQRSLLEVKSLNFV*V*CNTAA 392
>gb|CF394813.1|CF394813 RTDS2_7_D09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_D09_A021 5', mRNA sequence
Length = 767
Score = 174 bits (374), Expect(2) = 6e-045
Identities = 66/97 (68%), Positives = 83/97 (85%)
Frame = +3 / +3
Query: 63 CGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLT 242
CGCKPTKEDVKRCFML+FDR+AFIIASTA+EEEM WY +R+VWTDK LNLKL+RKG+LT
Sbjct: 3 CGCKPTKEDVKRCFMLEFDRSAFIIASTATEEEMRHWYRDRIVWTDKDLNLKLMRKGLLT 182
Query: 243 RIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKE 353
RIY PM IVQ L+E+GVF++A+A+G + +S ++
Sbjct: 183 RIYAPMVIVQGLKEAGVFSNALASGHAVLKKSMSKEQ 293
Score = 114 bits (243), Expect = 9e-025
Identities = 54/85 (63%), Positives = 63/85 (74%)
Frame = -2 / -2
Query: 316 PAAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDA 137
P A A +KTP S + *T+ IG Y+RV+ PFL SFKF LSV T RS YQ ISSS+AV+A
Sbjct: 256 PDAKALLKTPASFKP*TMTIGAYIRVNRPFLMSFKFKSLSVQTMRSRYQWRISSSVAVEA 77
Query: 136 IIKAALSKSNMKHLLTSSFVGLHPQ 62
I+ A S S+MKHLLTSSFVGL PQ
Sbjct: 76 IMNAERSNSSMKHLLTSSFVGLQPQ 2
Score = 29.5 bits (58), Expect(2) = 6e-045
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3 / +3
Query: 480 VTAVPPLSPPSLD 518
V AVPPL+PPSLD
Sbjct: 453 VMAVPPLAPPSLD 491
>gb|BX251001.1|BX251001 BX251001 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP044A04, mRNA sequence
Length = 720
Score = 141 bits (302), Expect(2) = 4e-035
Identities = 54/85 (63%), Positives = 71/85 (83%)
Frame = +3 / +3
Query: 99 CFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSL 278
CFML+FDR+AFIIASTA+EEEM WY +R+VWTDK LNLKL+RKG+LTRIY PM IVQ L
Sbjct: 3 CFMLEFDRSAFIIASTATEEEMRHWYRDRIVWTDKDLNLKLMRKGLLTRIYAPMVIVQGL 182
Query: 279 RESGVFTSAIAAGQPAVNAKLSPKE 353
+E+GVF++A+A+G + +S ++
Sbjct: 183 KEAGVFSNALASGHAVLKKSMSREQ 257
Score = 29.5 bits (58), Expect(2) = 4e-035
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3 / +3
Query: 480 VTAVPPLSPPSLD 518
V AVPPL+PPSLD
Sbjct: 420 VMAVPPLAPPSLD 458
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 422,163,576
Number of Sequences: 355925
Number of extensions: 5942453
Number of successful extensions: 43946
Number of sequences better than 1.0e-020: 6
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11322705450
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)