TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3106160.2.1
         (788 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BX682384.2|BX682384  BX682384 Pinus pinaster differenciat...   221   6e-059
gb|BX252725.1|BX252725  BX252725 Pinus pinaster differenciat...   199   1e-050
gb|CF394813.1|CF394813  RTDS2_7_D09.g1_A021 Drought-stressed...   174   6e-045
gb|BX251001.1|BX251001  BX251001 Pinus pinaster differenciat...   141   4e-035
>gb|BX682384.2|BX682384 BX682384 Pinus pinaster differenciating xylem adult Pinus pinaster
           cDNA clone 115H04 similar to seedling lethal mutation,
           mRNA sequence
          Length = 677

 Score =  221 bits (476), Expect(2) = 6e-059
 Identities = 86/117 (73%), Positives = 103/117 (88%)
 Frame = +3 / +1

                                                                       
Query: 3   AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
           AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFML+FDR+AFIIASTA+EEEM  WY +
Sbjct: 31  AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRSAFIIASTATEEEMRHWYRD 210

                                                                    
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKE 353
           R+VWTDK LNLKL+RKG+LTRIY PM IVQ L+E+GVF++A+A+G   +   +S ++
Sbjct: 211 RIVWTDKDLNLKLMRKGLLTRIYAPMVIVQGLKEAGVFSNALASGHAVLKKSMSREQ 381

 Score =  139 bits (299), Expect = 2e-032
 Identities = 68/105 (64%), Positives = 78/105 (74%)
 Frame = -2 / -1

                                                                       
Query: 316 PAAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDA 137
           P A A +KTP S + *T+ IG Y+RV+ PFL SFKF  LSV T RS YQ  ISSS+AV+A
Sbjct: 344 PDAKALLKTPASFKP*TMTIGAYIRVNRPFLMSFKFKSLSVQTMRSRYQWRISSSVAVEA 165

                                                        
Query: 136 IIKAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
           I+ A  S S+MKHLLTSSFVGL PQRS L+VKS N V V*C TAA
Sbjct: 164 IMNAERSNSSMKHLLTSSFVGLQPQRSLLEVKSLNFV*V*CNTAA 30

 Score = 29.5 bits (58), Expect(2) = 6e-059
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3 / +1

                        
Query: 480 VTAVPPLSPPSLD 518
           V AVPPL+PPSLD
Sbjct: 544 VMAVPPLAPPSLD 582
>gb|BX252725.1|BX252725 BX252725 Pinus pinaster differenciating xylem adult Pinus pinaster
           cDNA clone PP069G07, mRNA sequence
          Length = 681

 Score =  199 bits (430), Expect = 1e-050
 Identities = 78/96 (81%), Positives = 88/96 (91%)
 Frame = +3 / +3

                                                                       
Query: 3   AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
           AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFML+FDR+AFIIASTA+EEEM  WY +
Sbjct: 393 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRSAFIIASTATEEEMRHWYRD 572

                                               
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESG 290
           R+VWT + LNLKL+RKG+LTRIY PM IVQ L+E+G
Sbjct: 573 RIVWTXQDLNLKLMRKGLLTRIYAPMVIVQGLKEAG 680

 Score =  128 bits (274), Expect = 5e-029
 Identities = 62/96 (64%), Positives = 71/96 (73%)
 Frame = -2 / -3

                                                                       
Query: 289 PDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAIIKAALSKS 110
           P S + *T+ IG Y+RV+ PFL SFKF   SV T RS YQ  ISSS+AV+AI+ A  S S
Sbjct: 679 PASFKP*TMTIGAYIRVNRPFLMSFKFKSXSVQTMRSRYQWRISSSVAVEAIMNAERSNS 500

                                               
Query: 109 NMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
           +MKHLLTSSFVGL PQRS L+VKS N V V*C TAA
Sbjct: 499 SMKHLLTSSFVGLQPQRSLLEVKSLNFV*V*CNTAA 392
>gb|CF394813.1|CF394813 RTDS2_7_D09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
           taeda cDNA clone RTDS2_7_D09_A021 5', mRNA sequence
          Length = 767

 Score =  174 bits (374), Expect(2) = 6e-045
 Identities = 66/97 (68%), Positives = 83/97 (85%)
 Frame = +3 / +3

                                                                       
Query: 63  CGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLT 242
           CGCKPTKEDVKRCFML+FDR+AFIIASTA+EEEM  WY +R+VWTDK LNLKL+RKG+LT
Sbjct: 3   CGCKPTKEDVKRCFMLEFDRSAFIIASTATEEEMRHWYRDRIVWTDKDLNLKLMRKGLLT 182

                                                
Query: 243 RIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKE 353
           RIY PM IVQ L+E+GVF++A+A+G   +   +S ++
Sbjct: 183 RIYAPMVIVQGLKEAGVFSNALASGHAVLKKSMSKEQ 293

 Score =  114 bits (243), Expect = 9e-025
 Identities = 54/85 (63%), Positives = 63/85 (74%)
 Frame = -2 / -2

                                                                       
Query: 316 PAAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDA 137
           P A A +KTP S + *T+ IG Y+RV+ PFL SFKF  LSV T RS YQ  ISSS+AV+A
Sbjct: 256 PDAKALLKTPASFKP*TMTIGAYIRVNRPFLMSFKFKSLSVQTMRSRYQWRISSSVAVEA 77

                                    
Query: 136 IIKAALSKSNMKHLLTSSFVGLHPQ 62
           I+ A  S S+MKHLLTSSFVGL PQ
Sbjct: 76  IMNAERSNSSMKHLLTSSFVGLQPQ 2

 Score = 29.5 bits (58), Expect(2) = 6e-045
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3 / +3

                        
Query: 480 VTAVPPLSPPSLD 518
           V AVPPL+PPSLD
Sbjct: 453 VMAVPPLAPPSLD 491
>gb|BX251001.1|BX251001 BX251001 Pinus pinaster differenciating xylem adult Pinus pinaster
           cDNA clone PP044A04, mRNA sequence
          Length = 720

 Score =  141 bits (302), Expect(2) = 4e-035
 Identities = 54/85 (63%), Positives = 71/85 (83%)
 Frame = +3 / +3

                                                                       
Query: 99  CFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSL 278
           CFML+FDR+AFIIASTA+EEEM  WY +R+VWTDK LNLKL+RKG+LTRIY PM IVQ L
Sbjct: 3   CFMLEFDRSAFIIASTATEEEMRHWYRDRIVWTDKDLNLKLMRKGLLTRIYAPMVIVQGL 182

                                    
Query: 279 RESGVFTSAIAAGQPAVNAKLSPKE 353
           +E+GVF++A+A+G   +   +S ++
Sbjct: 183 KEAGVFSNALASGHAVLKKSMSREQ 257

 Score = 29.5 bits (58), Expect(2) = 4e-035
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3 / +3

                        
Query: 480 VTAVPPLSPPSLD 518
           V AVPPL+PPSLD
Sbjct: 420 VMAVPPLAPPSLD 458
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 422,163,576
Number of Sequences: 355925
Number of extensions: 5942453
Number of successful extensions: 43946
Number of sequences better than 1.0e-020: 6
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11322705450
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)