TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106156.2.1
(1016 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX682993.1|BX682993 BX682993 Pinus pinaster differenciat... 316 6e-099
gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus adde... 349 3e-097
gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pin... 349 2e-095
gb|CF396564.1|CF396564 RTDS2_22_F11.g1_A021 Drought-stresse... 260 5e-095
gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciat... 347 1e-094
gb|DR057850.1|DR057850 RTNIT1_8_E08.b1_A029 Roots minus nit... 263 1e-069
gb|DT637598.1|DT637598 EST1152529 Normalized pine embryo li... 136 1e-057
gb|BX678625.1|BX678625 BX678625 RS Pinus pinaster cDNA clon... 132 7e-057
gb|DR099748.1|DR099748 STRR1_58_E10.b1_A033 Stem Response R... 192 4e-048
gb|DR388190.1|DR388190 RTHG1_26_E04.g1_A029 Roots plus adde... 184 7e-046
gb|DR071265.1|DR071265 RTDK1_18_F12.g1_A029 Roots, dark Pin... 175 6e-043
gb|DR693051.1|DR693051 EST1083139 Normalized pine embryo li... 108 1e-029
gb|CO196982.1|CO196982 GEO1_3_C05.b1_A029 Root gravitropism... 94 2e-029
gb|DR052757.1|DR052757 RTCA1_6_E04.g1_A029 Roots minus calc... 120 1e-026
gb|CO197051.1|CO197051 GEO1_3_C05.g1_A029 Root gravitropism... 108 4e-026
gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblo... 59 1e-025
gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clon... 74 7e-024
gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response R... 73 2e-023
gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control P... 71 2e-023
gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from lobl... 59 3e-023
gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblo... 59 3e-023
gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblo... 59 3e-023
gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblo... 59 3e-023
gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo li... 59 3e-023
gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control P... 59 3e-023
gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control P... 59 3e-023
gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stresse... 59 3e-023
gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus adde... 59 3e-023
gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo li... 61 5e-023
gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo li... 61 6e-023
gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control P... 57 1e-022
>gb|BX682993.1|BX682993 BX682993 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126F07 similar to UDP-glucose 4-epimerase (EC
5.1.3.2), mRNA sequence
Length = 624
Score = 316 bits (684), Expect(2) = 6e-099
Identities = 122/163 (74%), Positives = 142/163 (87%)
Frame = -1 / +2
Query: 773 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGVIPGLKVKGTDYPTADGTCIRD 594
RYFNVIGSDPEGRLGEAPRPELR HGRISGACFDAA+G+IPGL++KGTDY T DGTC+RD
Sbjct: 134 RYFNVIGSDPEGRLGEAPRPELRNHGRISGACFDAAMGIIPGLQIKGTDYETRDGTCVRD 313
Query: 593 YIDVTDLVDAHVKALNKAEPRKVGIYNVGTGRGRSVNEFVDACKKATGVNIKIEYLNRRP 414
YI VTDL+DAHVKALNK + V +YNVGTG+G +V EFV++CK+ATGVNI I L RRP
Sbjct: 314 YIHVTDLIDAHVKALNKTQSGHVDVYNVGTGKGSTVKEFVESCKQATGVNITIVSLERRP 493
Query: 413 GDYAEVYSDPTKINKELNWTAHYTDLKESLSVAWRWQKSHPRG 285
GDYAEVYSDP+KI +ELNW A YT+L ESL+VAW W+++HP G
Sbjct: 494 GDYAEVYSDPSKIQRELNWFAQYTNLTESLAVAWSWRRTHPVG 622
Score = 199 bits (428), Expect(2) = 3e-061
Identities = 106/164 (64%), Positives = 116/164 (70%)
Frame = +1 / -1
Query: 283 *PRGCDFCHLHATDRLSLRSV**AVQLSSLFIFVGSLYTSA*SPGLLLRYSILMLTPVAF 462
*P G L AT +LS+R V A QLSS I GSLYTSA*SPGLL +I+MLTPVA
Sbjct: 624 *PTG*VLRQLQATAKLSVRFVYCANQLSSR*ILEGSLYTSA*SPGLLSNETIVMLTPVAC 445
Query: 463 LQASTNSLTERPLPVPTL*MPTFLGSALLSAFT*ASTKSVTSI*SLMQVPSAVG*SVPLT 642
LQ STNS T PLPVPTL* T L A T*AS KSVT +*SL VPS V *SVPL
Sbjct: 444 LQDSTNSFTVLPLPVPTL*TSTCPD*VLFRALT*ASIKSVTWM*SLTHVPSLVS*SVPLI 265
Query: 643 FNPGMTPNAASKQAPDIRPCSRSSGLGASPNLPSGSDPITLKYL 774
PGM P AASK AP++RP R+SGLGASP+LPSGS+PITLKYL
Sbjct: 264 CKPGMMPIAASKHAPEMRP*FRNSGLGASPSLPSGSEPITLKYL 133
Score = 66.1 bits (138), Expect(2) = 6e-099
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = -1 / +2
Query: 938 EPDKMPITEATP*FPINPYGKAKKMAEDIIIDFSNSKGVDMAVM 807
EP MPITE TP PINPYGKAKKMAE+II D++ S + + ++
Sbjct: 2 EPKTMPITEDTPQLPINPYGKAKKMAEEIIKDYARSSDLGVTIL 133
Score = 57.4 bits (119), Expect(2) = 3e-061
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +1 / -1
Query: 844 SIMISSAIFLAFPYGLIGN*GVASVIGILSGS 939
S++ISSAIFLAFP GLIGN*GV+SVIGI+ GS
Sbjct: 96 SLIISSAIFLAFP*GLIGN*GVSSVIGIVLGS 1
>gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_F04_A029 5', mRNA sequence
Length = 638
Score = 349 bits (756), Expect(2) = 3e-097
Identities = 138/169 (81%), Positives = 152/169 (89%)
Frame = -1 / +2
Query: 785 LQLHRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGVIPGLKVKGTDYPTADGT 606
+ L RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA G+IPGLKV+GTDY T DGT
Sbjct: 56 VMLLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIPGLKVRGTDYSTPDGT 235
Query: 605 CIRDYIDVTDLVDAHVKALNKAEPRKVGIYNVGTGRGRSVNEFVDACKKATGVNIKIEYL 426
CIRDYIDVTDLVDAHVKAL P +V IYNVGTG+GRSV EFV+ACK ATGVNI +EYL
Sbjct: 236 CIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYL 415
Query: 425 NRRPGDYAEVYSDPTKINKELNWTAHYTDLKESLSVAWRWQKSHPRGYG 279
RRPGDYAEVYSDP+KIN+ELNW+A YT+LKESL+VAW+WQK+HP GYG
Sbjct: 416 GRRPGDYAEVYSDPSKINQELNWSAKYTNLKESLTVAWKWQKAHPNGYG 562
Score = 253 bits (548), Expect = 1e-066
Identities = 120/165 (72%), Positives = 131/165 (79%)
Frame = +1 / -3
Query: 280 P*PRGCDFCHLHATDRLSLRSV**AVQLSSLFIFVGSLYTSA*SPGLLLRYSILMLTPVA 459
P P GC FCH AT RLSLR V A Q +S I GSLYTSA*SPGL RYS ++LTPVA
Sbjct: 561 PYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 382
Query: 460 FLQASTNSLTERPLPVPTL*MPTFLGSALLSAFT*ASTKSVTSI*SLMQVPSAVG*SVPL 639
LQASTNSLT+ P PVPTL + T G L +AFT ASTKSVTS+*SL+QVPS V *SVPL
Sbjct: 381 ALQASTNSLTDLPFPVPTLYILTSPGRTLTNAFTCASTKSVTSM*SLIQVPSGVL*SVPL 202
Query: 640 TFNPGMTPNAASKQAPDIRPCSRSSGLGASPNLPSGSDPITLKYL 774
TFNPG+ P AASK AP+IRPCSRSSGLGASPNLPSGS+PITLKYL
Sbjct: 201 TFNPGIIPLAASKHAPEIRPCSRSSGLGASPNLPSGSEPITLKYL 67
Score = 79.4 bits (167), Expect(2) = 5e-022
Identities = 36/79 (45%), Positives = 48/79 (60%)
Frame = +3 / -2
Query: 327 ALFEIGIMSCPVELLVYLCWVAVYFCIISWPSVEVLNFDVDPSCLLAGINKLIN*ATSSC 506
A EI I PV LLV + +YFCIISWP ++L ++D SC LA KL++* S
Sbjct: 514 AFLEICIFCRPV*LLVNFGRITIYFCIISWPPTKILYCNIDSSCSLASFYKLLD*PAFSS 335
Query: 507 SNIVNADFSRLCLVECFHM 563
+NIV F+R + +CFHM
Sbjct: 334 ANIVYPYFTRTNINQCFHM 278
Score = 79.0 bits (166), Expect(3) = 3e-026
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = -3 / +1
Query: 771 IFQCYWI*P*GKIR*GS*ARTSRAWSDIWGLL*CSIRSHSRIKG*RNRLSHS*WNLHKRL 592
+FQC W G++R + RTS W+++ +L CS ++S I+G*RNRL +S*W L++ L
Sbjct: 70 VFQCNWFRSRGQVRGSTKTRTSGTWTNLGCMLRCSKGNYSWIEG*RNRL*YS*WYLYQGL 249
Query: 591 Y*CHRFS*CSCES 553
+*C RF C+CES
Sbjct: 250 H*CDRFGGCACES 288
Score = 53.8 bits (111), Expect(3) = 3e-026
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = -3 / +1
Query: 528 SRHLQCWNRKRSLS**VC*CLQEGNWGQHQN*VPQQKARRLCRSI 394
S+ +QCW+ KR +S VC LQ NW Q+ + V +ARRLCRSI
Sbjct: 313 SKDIQCWHWKRQVSQGVCRSLQGCNWSQYYSRVSWSEARRLCRSI 447
Score = 45.5 bits (93), Expect(2) = 5e-022
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +3 / -2
Query: 606 GSISCGIICSFNL*SWNDS*CCIKASPRYPTMLSKFW 716
G+I IICS NL S N+S CCI+A R +M KFW
Sbjct: 235 GTIRSTIICSSNLQSRNNSPCCIEACTRDSSMFPKFW 125
Score = 27.2 bits (53), Expect(2) = 3e-097
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1 / +2
Query: 872 KKMAEDIIIDFSNSKGVDMAVM 807
KKMAEDII DFS + + ++
Sbjct: 2 KKMAEDIIQDFSRKSNMAVMLL 67
Score = 24.0 bits (46), Expect(3) = 3e-026
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 870 ENGRGYHNRFLK 835
ENGRG++ RF K
Sbjct: 4 ENGRGHYPRFFK 39
>gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E03_A029 3', mRNA sequence
Length = 811
Score = 349 bits (756), Expect = 2e-095
Identities = 138/169 (81%), Positives = 152/169 (89%)
Frame = -1 / +1
Query: 785 LQLHRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGVIPGLKVKGTDYPTADGT 606
+ L RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA G+IPGLKV+GTDY T DGT
Sbjct: 1 VMLLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIPGLKVRGTDYSTPDGT 180
Query: 605 CIRDYIDVTDLVDAHVKALNKAEPRKVGIYNVGTGRGRSVNEFVDACKKATGVNIKIEYL 426
CIRDYIDVTDLVDAHVKAL P +V IYNVGTG+GRSV EFV+ACK ATGVNI +EYL
Sbjct: 181 CIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYL 360
Query: 425 NRRPGDYAEVYSDPTKINKELNWTAHYTDLKESLSVAWRWQKSHPRGYG 279
RRPGDYAEVYSDP+KIN+ELNW+A YT+LKESL+VAW+WQK+HP GYG
Sbjct: 361 GRRPGDYAEVYSDPSKINQELNWSAKYTNLKESLTVAWKWQKAHPNGYG 507
Score = 253 bits (548), Expect = 1e-066
Identities = 120/165 (72%), Positives = 131/165 (79%)
Frame = +1 / -3
Query: 280 P*PRGCDFCHLHATDRLSLRSV**AVQLSSLFIFVGSLYTSA*SPGLLLRYSILMLTPVA 459
P P GC FCH AT RLSLR V A Q +S I GSLYTSA*SPGL RYS ++LTPVA
Sbjct: 506 PYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 327
Query: 460 FLQASTNSLTERPLPVPTL*MPTFLGSALLSAFT*ASTKSVTSI*SLMQVPSAVG*SVPL 639
LQASTNSLT+ P PVPTL + T G L +AFT ASTKSVTS+*SL+QVPS V *SVPL
Sbjct: 326 ALQASTNSLTDLPFPVPTLYILTSPGRTLTNAFTCASTKSVTSM*SLIQVPSGVL*SVPL 147
Query: 640 TFNPGMTPNAASKQAPDIRPCSRSSGLGASPNLPSGSDPITLKYL 774
TFNPG+ P AASK AP+IRPCSRSSGLGASPNLPSGS+PITLKYL
Sbjct: 146 TFNPGIIPLAASKHAPEIRPCSRSSGLGASPNLPSGSEPITLKYL 12
Score = 79.4 bits (167), Expect(2) = 5e-022
Identities = 36/79 (45%), Positives = 48/79 (60%)
Frame = +3 / -2
Query: 327 ALFEIGIMSCPVELLVYLCWVAVYFCIISWPSVEVLNFDVDPSCLLAGINKLIN*ATSSC 506
A EI I PV LLV + +YFCIISWP ++L ++D SC LA KL++* S
Sbjct: 459 AFLEICIFCRPV*LLVNFGRITIYFCIISWPPTKILYCNIDSSCSLASFYKLLD*PAFSS 280
Query: 507 SNIVNADFSRLCLVECFHM 563
+NIV F+R + +CFHM
Sbjct: 279 ANIVYPYFTRTNINQCFHM 223
Score = 79.0 bits (166), Expect(2) = 2e-024
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = -3 / +3
Query: 771 IFQCYWI*P*GKIR*GS*ARTSRAWSDIWGLL*CSIRSHSRIKG*RNRLSHS*WNLHKRL 592
+FQC W G++R + RTS W+++ +L CS ++S I+G*RNRL +S*W L++ L
Sbjct: 15 VFQCNWFRSRGQVRGSTKTRTSGTWTNLGCMLRCSKGNYSWIEG*RNRL*YS*WYLYQGL 194
Query: 591 Y*CHRFS*CSCES 553
+*C RF C+CES
Sbjct: 195 H*CDRFGGCACES 233
Score = 53.8 bits (111), Expect(2) = 2e-024
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = -3 / +3
Query: 528 SRHLQCWNRKRSLS**VC*CLQEGNWGQHQN*VPQQKARRLCRSI 394
S+ +QCW+ KR +S VC LQ NW Q+ + V +ARRLCRSI
Sbjct: 258 SKDIQCWHWKRQVSQGVCRSLQGCNWSQYYSRVSWSEARRLCRSI 392
Score = 45.5 bits (93), Expect(2) = 5e-022
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +3 / -2
Query: 606 GSISCGIICSFNL*SWNDS*CCIKASPRYPTMLSKFW 716
G+I IICS NL S N+S CCI+A R +M KFW
Sbjct: 180 GTIRSTIICSSNLQSRNNSPCCIEACTRDSSMFPKFW 70
>gb|CF396564.1|CF396564 RTDS2_22_F11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_F11_A021 5', mRNA sequence
Length = 683
Score = 260 bits (563), Expect(2) = 5e-095
Identities = 101/131 (77%), Positives = 116/131 (88%)
Frame = -1 / +3
Query: 773 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGVIPGLKVKGTDYPTADGTCIRD 594
RYFNVIGSDPEGRLGEAPRPELR HGRISGACFDAA+G+IPGL++KGTDY T DGTC+RD
Sbjct: 291 RYFNVIGSDPEGRLGEAPRPELRNHGRISGACFDAAMGIIPGLQIKGTDYETRDGTCVRD 470
Query: 593 YIDVTDLVDAHVKALNKAEPRKVGIYNVGTGRGRSVNEFVDACKKATGVNIKIEYLNRRP 414
YI VTDL+DAHVKALNK + V +YNVGTG+G +V EFV++CK+ATGVNI + L RRP
Sbjct: 471 YIHVTDLIDAHVKALNKTQSGHVDVYNVGTGKGSTVKEFVESCKQATGVNITVVSLERRP 650
Query: 413 GDYAEVYSDPT 381
GDYAEVYSDP+
Sbjct: 651 GDYAEVYSDPS 683
Score = 179 bits (385), Expect(2) = 2e-061
Identities = 89/130 (68%), Positives = 97/130 (74%)
Frame = +1 / -2
Query: 385 GSLYTSA*SPGLLLRYSILMLTPVAFLQASTNSLTERPLPVPTL*MPTFLGSALLSAFT* 564
GSLYTSA*SPGLL + +MLTPVA LQ STNS T PLPVPTL* T L A T*
Sbjct: 679 GSLYTSA*SPGLLSNETTVMLTPVACLQDSTNSFTVLPLPVPTL*TSTCPD*VLFRALT* 500
Query: 565 ASTKSVTSI*SLMQVPSAVG*SVPLTFNPGMTPNAASKQAPDIRPCSRSSGLGASPNLPS 744
AS KSVT +*SL VPS V *SVPL PGM P AASK AP++RP R+SGLGASP+LPS
Sbjct: 499 ASIKSVTWM*SLTHVPSLVS*SVPLICKPGMMPIAASKHAPEMRP*FRNSGLGASPSLPS 320
Query: 745 GSDPITLKYL 774
GS+PITLKYL
Sbjct: 319 GSEPITLKYL 290
Score = 108 bits (230), Expect(2) = 5e-095
Identities = 44/70 (62%), Positives = 55/70 (78%)
Frame = -1 / +3
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIIDFS 837
TL +LEAM ++ V+ LIYSSTCATYGEP MPITE TP PINPYGKAKKMAE+II D++
Sbjct: 81 TLTVLEAMVANNVKRLIYSSTCATYGEPKIMPITEDTPQLPINPYGKAKKMAEEIIKDYA 260
Query: 836 NSKGVDMAVM 807
S + + ++
Sbjct: 261 RSSDLGVTIL 290
Score = 77.6 bits (163), Expect(2) = 2e-061
Identities = 39/54 (72%), Positives = 45/54 (83%)
Frame = +1 / -2
Query: 844 SIMISSAIFLAFPYGLIGN*GVASVIGILSGSP*VAHVLE*IRVWTP*DAIASK 1005
S++ISSAIFLAFP GLIGN*GV+SVIGI+ GSP VA VLE*I ++T IASK
Sbjct: 253 SLIISSAIFLAFP*GLIGN*GVSSVIGIILGSPYVAQVLE*ISLFTLLATIASK 92
>gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088D07, mRNA sequence
Length = 673
Score = 347 bits (751), Expect = 1e-094
Identities = 137/169 (81%), Positives = 152/169 (89%)
Frame = -1 / +1
Query: 785 LQLHRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGVIPGLKVKGTDYPTADGT 606
+ L RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA G+IPGLKV+GTDY T DGT
Sbjct: 10 VMLLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIPGLKVRGTDYSTPDGT 189
Query: 605 CIRDYIDVTDLVDAHVKALNKAEPRKVGIYNVGTGRGRSVNEFVDACKKATGVNIKIEYL 426
CIRDYIDVTDLVDAHVKAL P +V IYNVGTG+GRSV EFV+ACK ATGVNI +EYL
Sbjct: 190 CIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYL 369
Query: 425 NRRPGDYAEVYSDPTKINKELNWTAHYTDLKESLSVAWRWQKSHPRGYG 279
RRPGDYAEVYSDP+KIN+EL+W+A YT+LKESL+VAW+WQK+HP GYG
Sbjct: 370 GRRPGDYAEVYSDPSKINQELSWSAKYTNLKESLTVAWKWQKAHPNGYG 516
Score = 255 bits (551), Expect = 4e-067
Identities = 121/165 (73%), Positives = 131/165 (79%)
Frame = +1 / -3
Query: 280 P*PRGCDFCHLHATDRLSLRSV**AVQLSSLFIFVGSLYTSA*SPGLLLRYSILMLTPVA 459
P P GC FCH AT RLSLR V A QL+S I GSLYTSA*SPGL RYS ++LTPVA
Sbjct: 515 PYPLGCAFCHFQATVRLSLRFVYFADQLNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 336
Query: 460 FLQASTNSLTERPLPVPTL*MPTFLGSALLSAFT*ASTKSVTSI*SLMQVPSAVG*SVPL 639
LQASTNSLT+ P PVPTL + T G L AFT ASTKSVTS+*SL+QVPS V *SVPL
Sbjct: 335 ALQASTNSLTDLPFPVPTLYILTSPGRTLTKAFTCASTKSVTSM*SLIQVPSGVL*SVPL 156
Query: 640 TFNPGMTPNAASKQAPDIRPCSRSSGLGASPNLPSGSDPITLKYL 774
TFNPG+ P AASK AP+IRPCSRSSGLGASPNLPSGS+PITLKYL
Sbjct: 155 TFNPGIIPLAASKHAPEIRPCSRSSGLGASPNLPSGSEPITLKYL 21
Score = 76.2 bits (160), Expect(2) = 2e-023
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = -3 / +3
Query: 771 IFQCYWI*P*GKIR*GS*ARTSRAWSDIWGLL*CSIRSHSRIKG*RNRLSHS*WNLHKRL 592
+FQC W G++R + RTS W+++ +L CS ++S I+ *RNRL +S*W L++ L
Sbjct: 24 VFQCNWFRSRGQVRGSTKTRTSGTWTNLGCMLRCSQGNYSWIES*RNRL*YS*WYLYQGL 203
Query: 591 Y*CHRFS*CSCES 553
+*C RF C+CES
Sbjct: 204 H*CDRFGGCACES 242
Score = 53.8 bits (111), Expect(2) = 2e-023
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = -3 / +3
Query: 528 SRHLQCWNRKRSLS**VC*CLQEGNWGQHQN*VPQQKARRLCRSI 394
S+ +QCW+ KR +S VC LQ NW Q+ + V +ARRLCRSI
Sbjct: 267 SKDIQCWHWKRQVSQGVCRSLQGCNWSQYYSRVSWSEARRLCRSI 401
>gb|DR057850.1|DR057850 RTNIT1_8_E08.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_E08_A029 3', mRNA sequence
Length = 748
Score = 263 bits (569), Expect = 1e-069
Identities = 103/132 (78%), Positives = 117/132 (88%)
Frame = -1 / +2
Query: 674 DAALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNKAEPRKVGIYNVGTGRG 495
DAA G+IPGLKV+GTDY T DGTCIRDYIDVTDLVDAHVKAL P +V IYNVGTG+G
Sbjct: 2 DAARGIIPGLKVRGTDYSTPDGTCIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKG 181
Query: 494 RSVNEFVDACKKATGVNIKIEYLNRRPGDYAEVYSDPTKINKELNWTAHYTDLKESLSVA 315
RSV EFV+ACK ATGVNI +EYL RRPGD+AEVYSDP+KIN+ELNW+A YT+LKESL+VA
Sbjct: 182 RSVKEFVEACKAATGVNITVEYLGRRPGDHAEVYSDPSKINQELNWSAKYTNLKESLTVA 361
Query: 314 WRWQKSHPRGYG 279
W+WQK+HP GYG
Sbjct: 362 WKWQKAHPNGYG 397
Score = 180 bits (388), Expect = 1e-044
Identities = 90/132 (68%), Positives = 99/132 (75%)
Frame = +1 / -2
Query: 280 P*PRGCDFCHLHATDRLSLRSV**AVQLSSLFIFVGSLYTSA*SPGLLLRYSILMLTPVA 459
P P GC FCH AT RLSLR V A Q +S I GSLYTSA*SPGL RYS ++LTPVA
Sbjct: 396 PYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 217
Query: 460 FLQASTNSLTERPLPVPTL*MPTFLGSALLSAFT*ASTKSVTSI*SLMQVPSAVG*SVPL 639
LQASTNSLT+ P PVPTL + T G L +AFT ASTKSVTS+*SL+QVPS V *SVPL
Sbjct: 216 ALQASTNSLTDLPFPVPTLYILTSPGRTLTNAFTCASTKSVTSM*SLIQVPSGVL*SVPL 37
Query: 640 TFNPGMTPNAAS 675
TFNPG+ P AAS
Sbjct: 36 TFNPGIIPLAAS 1
>gb|DT637598.1|DT637598 EST1152529 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH548 3' end, mRNA sequence
Length = 831
Score = 136 bits (291), Expect(2) = 1e-057
Identities = 51/59 (86%), Positives = 56/59 (94%)
Frame = -1 / +1
Query: 773 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGVIPGLKVKGTDYPTADGTCIR 597
RYFNVIGSDPEGRLGEAPRPELR HGRISGACFDAA+G+IPGL++KGTDY T DGTC+R
Sbjct: 652 RYFNVIGSDPEGRLGEAPRPELRNHGRISGACFDAAMGIIPGLQIKGTDYETRDGTCVR 828
Score = 108 bits (230), Expect(2) = 1e-057
Identities = 44/70 (62%), Positives = 55/70 (78%)
Frame = -1 / +1
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIIDFS 837
TL +LEAM ++ V+ LIYSSTCATYGEP MPITE TP PINPYGKAKKMAE+II D++
Sbjct: 442 TLTVLEAMVANNVKRLIYSSTCATYGEPKIMPITEDTPQLPINPYGKAKKMAEEIIKDYA 621
Query: 836 NSKGVDMAVM 807
S + + ++
Sbjct: 622 RSSDLGVTIL 651
Score = 95.0 bits (201), Expect(2) = 3e-036
Identities = 42/59 (71%), Positives = 47/59 (79%)
Frame = +1 / -2
Query: 598 LMQVPSAVG*SVPLTFNPGMTPNAASKQAPDIRPCSRSSGLGASPNLPSGSDPITLKYL 774
L VPS V *SVPL PGM P AASK AP++RP R+SGLGASP+LPSGS+PITLKYL
Sbjct: 827 LTHVPSLVS*SVPLICKPGMMPIAASKHAPEMRP*FRNSGLGASPSLPSGSEPITLKYL 651
Score = 77.6 bits (163), Expect(2) = 3e-036
Identities = 39/54 (72%), Positives = 45/54 (83%)
Frame = +1 / -2
Query: 844 SIMISSAIFLAFPYGLIGN*GVASVIGILSGSP*VAHVLE*IRVWTP*DAIASK 1005
S++ISSAIFLAFP GLIGN*GV+SVIGI+ GSP VA VLE*I ++T IASK
Sbjct: 614 SLIISSAIFLAFP*GLIGN*GVSSVIGIILGSPYVAQVLE*ISLFTLLATIASK 453
>gb|BX678625.1|BX678625 BX678625 RS Pinus pinaster cDNA clone RS12B09, mRNA sequence
Length = 542
Score = 132 bits (283), Expect(2) = 7e-057
Identities = 50/57 (87%), Positives = 54/57 (94%)
Frame = -1 / +1
Query: 773 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGVIPGLKVKGTDYPTADGTC 603
RYFNVIGSDPEGRLGEAPRPELR HGRISGACFDAA+G+IPGL++KGTDY T DGTC
Sbjct: 370 RYFNVIGSDPEGRLGEAPRPELRNHGRISGACFDAAMGIIPGLQIKGTDYETRDGTC 540
Score = 109 bits (232), Expect(2) = 7e-057
Identities = 44/70 (62%), Positives = 55/70 (78%)
Frame = -1 / +1
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIIDFS 837
TL +LEAM ++ V+ LIYSSTCATYGEP MPITE TP PINPYGKAKKMAE+II D++
Sbjct: 160 TLTVLEAMVANNVKRLIYSSTCATYGEPKTMPITEDTPQLPINPYGKAKKMAEEIIKDYA 339
Query: 836 NSKGVDMAVM 807
S + + ++
Sbjct: 340 RSSDLGVTIL 369
Score = 93.6 bits (198), Expect(2) = 1e-035
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = +1 / -1
Query: 607 VPSAVG*SVPLTFNPGMTPNAASKQAPDIRPCSRSSGLGASPNLPSGSDPITLKYL 774
VPS V *SVPL PGM P AASK AP++RP R+SGLGASP+LPSGS+PITLKYL
Sbjct: 536 VPSLVS*SVPLICKPGMMPIAASKHAPEMRP*FRNSGLGASPSLPSGSEPITLKYL 369
Score = 77.1 bits (162), Expect(2) = 1e-035
Identities = 39/54 (72%), Positives = 45/54 (83%)
Frame = +1 / -1
Query: 844 SIMISSAIFLAFPYGLIGN*GVASVIGILSGSP*VAHVLE*IRVWTP*DAIASK 1005
S++ISSAIFLAFP GLIGN*GV+SVIGI+ GSP VA VLE*I ++T IASK
Sbjct: 332 SLIISSAIFLAFP*GLIGN*GVSSVIGIVLGSPYVAQVLE*ISLFTLLATIASK 171
>gb|DR099748.1|DR099748 STRR1_58_E10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_58_E10_A033 3', mRNA sequence
Length = 748
Score = 192 bits (413), Expect = 4e-048
Identities = 74/97 (76%), Positives = 85/97 (87%)
Frame = -1 / +2
Query: 569 DAHVKALNKAEPRKVGIYNVGTGRGRSVNEFVDACKKATGVNIKIEYLNRRPGDYAEVYS 390
DAHVKAL P +V IYNVGTG+GRSV EFV+ACK ATGVNI +EYL RRPGDYAEVYS
Sbjct: 2 DAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYS 181
Query: 389 DPTKINKELNWTAHYTDLKESLSVAWRWQKSHPRGYG 279
DP+KIN+ELNW+A YT+LKESL+VAW+WQK+HP GYG
Sbjct: 182 DPSKINQELNWSAKYTNLKESLTVAWKWQKAHPNGYG 292
Score = 123 bits (264), Expect = 2e-027
Identities = 62/97 (63%), Positives = 68/97 (70%)
Frame = +1 / -2
Query: 280 P*PRGCDFCHLHATDRLSLRSV**AVQLSSLFIFVGSLYTSA*SPGLLLRYSILMLTPVA 459
P P GC FCH AT RLSLR V A Q +S I GSLYTSA*SPGL RYS ++LTPVA
Sbjct: 291 PYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 112
Query: 460 FLQASTNSLTERPLPVPTL*MPTFLGSALLSAFT*AS 570
LQASTNSLT+ P PVPTL + T G L +AFT AS
Sbjct: 111 ALQASTNSLTDLPFPVPTLYILTSPGRTLTNAFTCAS 1
>gb|DR388190.1|DR388190 RTHG1_26_E04.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_26_E04_A029 5', mRNA sequence
Length = 540
Score = 184 bits (397), Expect = 7e-046
Identities = 72/97 (74%), Positives = 82/97 (84%)
Frame = -1 / -1
Query: 569 DAHVKALNKAEPRKVGIYNVGTGRGRSVNEFVDACKKATGVNIKIEYLNRRPGDYAEVYS 390
DAHVKAL P +V IYNVGTG+GRSV EFV+ACK ATGVN +EYL RRPGDYAEVYS
Sbjct: 540 DAHVKALVNVCPGEVRIYNVGTGKGRSVKEFVEACKAATGVNFSVEYLGRRPGDYAEVYS 361
Query: 389 DPTKINKELNWTAHYTDLKESLSVAWRWQKSHPRGYG 279
DP+KIN+EL W A YT+LKESL+VAW+WQK+HP GYG
Sbjct: 360 DPSKINQELKWFAKYTNLKESLTVAWKWQKAHPNGYG 250
Score = 117 bits (250), Expect = 1e-025
Identities = 59/94 (62%), Positives = 63/94 (67%)
Frame = +1 / +2
Query: 280 P*PRGCDFCHLHATDRLSLRSV**AVQLSSLFIFVGSLYTSA*SPGLLLRYSILMLTPVA 459
P P GC FCH AT RLSLR V A +S I GSLYTSA*SPGL RYS LTPVA
Sbjct: 251 PYPLGCAFCHFQATVRLSLRFVYFANHFNSWLILEGSLYTSA*SPGLRPRYSTEKLTPVA 430
Query: 460 FLQASTNSLTERPLPVPTL*MPTFLGSALLSAFT 561
LQASTNSLT+ P PVPTL + T G L +AFT
Sbjct: 431 ALQASTNSLTDLPFPVPTLYILTSPGQTLTNAFT 532
>gb|DR071265.1|DR071265 RTDK1_18_F12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_F12_A029 5', mRNA sequence
Length = 527
Score = 175 bits (376), Expect = 6e-043
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = -1 / -1
Query: 530 KVGIYNVGTGRGRSVNEFVDACKKATGVNIKIEYLNRRPGDYAEVYSDPTKINKELNWTA 351
+V IYNVGTG+GRSV EFV+ACK ATGVNI +EYL RRPGDYAEVYSDP+KIN+ELNW+A
Sbjct: 524 EVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELNWSA 345
Query: 350 HYTDLKESLSVAWRWQKSHPRGYG 279
YT+LKESL+VAW+WQK+HP GYG
Sbjct: 344 KYTNLKESLTVAWKWQKAHPNGYG 273
Score = 113 bits (242), Expect = 2e-024
Identities = 54/79 (68%), Positives = 58/79 (73%)
Frame = +1 / +1
Query: 280 P*PRGCDFCHLHATDRLSLRSV**AVQLSSLFIFVGSLYTSA*SPGLLLRYSILMLTPVA 459
P P GC FCH AT RLSLR V A Q +S I GSLYTSA*SPGL RYS ++LTPVA
Sbjct: 274 PYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 453
Query: 460 FLQASTNSLTERPLPVPTL 516
LQASTNSLT+ P PVPTL
Sbjct: 454 ALQASTNSLTDLPFPVPTL 510
>gb|DR693051.1|DR693051 EST1083139 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADT74 3' end, mRNA sequence
Length = 691
Score = 108 bits (230), Expect(2) = 1e-029
Identities = 44/70 (62%), Positives = 55/70 (78%)
Frame = -1 / +2
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIIDFS 837
TL +LEAM ++ V+ LIYSSTCATYGEP MPITE TP PINPYGKAKKMAE+II D++
Sbjct: 434 TLTVLEAMVANNVKRLIYSSTCATYGEPKIMPITEDTPQLPINPYGKAKKMAEEIIKDYA 613
Query: 836 NSKGVDMAVM 807
S + + ++
Sbjct: 614 RSSDLGVTIL 643
Score = 42.3 bits (86), Expect(2) = 1e-029
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -1 / +2
Query: 773 RYFNVIGSDPEGRLGE 726
RYFNVIGSDPEGRLGE
Sbjct: 644 RYFNVIGSDPEGRLGE 691
>gb|CO196982.1|CO196982 GEO1_3_C05.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_C05_A029 3', mRNA sequence
Length = 677
Score = 93.6 bits (198), Expect(2) = 2e-029
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = -1 / +2
Query: 428 LNRRPGDYAEVYSDPTKINKELNWTAHYTDLKESLSVAWRWQKSHPRG 285
L RRPGDYAEVYSDP+KI +ELNW A YT+L ESL+VAW W+++HP G
Sbjct: 119 LERRPGDYAEVYSDPSKIQRELNWFAQYTNLTESLAVAWSWRRTHPVG 262
Score = 56.1 bits (116), Expect(2) = 2e-029
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = -1 / +1
Query: 527 VGIYNVGTGRGRSVNEFVDACKKATGVNIKI 435
V +YNVGTG+G +V EFV++CK+ATGVNI +
Sbjct: 19 VDVYNVGTGKGSTVKEFVESCKQATGVNITV 111
>gb|DR052757.1|DR052757 RTCA1_6_E04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_6_E04_A029 5', mRNA sequence
Length = 805
Score = 120 bits (257), Expect = 1e-026
Identities = 50/70 (71%), Positives = 57/70 (81%)
Frame = -1 / +3
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIIDFS 837
TL +LEAMA+HGV+ LIYSSTCATYGEP KMPITE TP PINPYGKAKKMAEDII DFS
Sbjct: 573 TLTVLEAMAAHGVKKLIYSSTCATYGEPAKMPITEETPQVPINPYGKAKKMAEDIIQDFS 752
Query: 836 NSKGVDMAVM 807
+ + ++
Sbjct: 753 RKSNMAVMLL 782
>gb|CO197051.1|CO197051 GEO1_3_C05.g1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_3_C05_A029 5', mRNA sequence
Length = 702
Score = 108 bits (230), Expect(2) = 4e-026
Identities = 44/70 (62%), Positives = 55/70 (78%)
Frame = -1 / +3
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIIDFS 837
TL +LEAM ++ V+ LIYSSTCATYGEP MPITE TP PINPYGKAKKMAE+II D++
Sbjct: 459 TLTVLEAMVANNVKRLIYSSTCATYGEPKIMPITEDTPQLPINPYGKAKKMAEEIIKDYA 638
Query: 836 NSKGVDMAVM 807
S + + ++
Sbjct: 639 RSSDLGVTIL 668
Score = 30.4 bits (60), Expect(2) = 4e-026
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -1 / +3
Query: 773 RYFNVIGSDPE 741
RYFNVIGSDPE
Sbjct: 669 RYFNVIGSDPE 701
>gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIH331 5' end, mRNA sequence
Length = 925
Score = 58.8 bits (122), Expect(4) = 1e-025
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 713 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 838
Score = 54.7 bits (113), Expect(4) = 1e-025
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +2
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 404 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 577
Score = 33.1 bits (66), Expect(4) = 1e-025
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +2
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 611 LLRYFNPVGAHPSGQIGEDPK 673
Score = 25.4 bits (49), Expect(4) = 1e-025
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1 / +3
Query: 518 YNVGTGRGRSVNEFVDA 468
YN+ TGRG SV E V A
Sbjct: 873 YNLRTGRGTSVLEMVAA 923
>gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clone RS16E09, mRNA sequence
Length = 661
Score = 73.9 bits (155), Expect(3) = 7e-024
Identities = 34/82 (41%), Positives = 49/82 (59%)
Frame = -1 / +3
Query: 590 IDVTDLVDAHVKALNKAEPRKVGIYNVGTGRGRSVNEFVDACKKATGVNIKIEYLNRRPG 411
+D+ D + ++ L KA YN+GTGRG SV E V A +KA+G +I +++ RRPG
Sbjct: 372 VDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPG 551
Query: 410 DYAEVYSDPTKINKELNWTAHY 345
D VY+ K +EL+W A Y
Sbjct: 552 DATAVYASTEKAERELDWKAKY 617
Score = 45.5 bits (93), Expect(3) = 7e-024
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -1 / +3
Query: 986 HGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 6 HGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 149
Score = 33.1 bits (66), Expect(3) = 7e-024
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +3
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 183 LLRYFNPVGAHPSGQIGEDPK 245
>gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C04_A033 5', mRNA sequence
Length = 847
Score = 73.5 bits (154), Expect(3) = 2e-023
Identities = 34/82 (41%), Positives = 48/82 (58%)
Frame = -1 / +3
Query: 590 IDVTDLVDAHVKALNKAEPRKVGIYNVGTGRGRSVNEFVDACKKATGVNIKIEYLNRRPG 411
+D+ D + ++ L KA YN+GTGRG SV E V A +KA+G +I +++ RRPG
Sbjct: 381 VDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPG 560
Query: 410 DYAEVYSDPTKINKELNWTAHY 345
D VY+ K +EL W A Y
Sbjct: 561 DATAVYASTEKAERELGWKAKY 626
Score = 45.5 bits (93), Expect(3) = 2e-023
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -1 / +3
Query: 986 HGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 15 HGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 158
Score = 33.1 bits (66), Expect(3) = 2e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +3
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 192 LLRYFNPVGAHPSGQIGEDPK 254
>gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 3', mRNA sequence
Length = 673
Score = 70.7 bits (148), Expect(2) = 2e-023
Identities = 29/58 (50%), Positives = 38/58 (65%)
Frame = -1 / +2
Query: 518 YNVGTGRGRSVNEFVDACKKATGVNIKIEYLNRRPGDYAEVYSDPTKINKELNWTAHY 345
YN+GTGRG SV E V A +KA+G +I +++ RRPGD VY+ K +EL W A Y
Sbjct: 161 YNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWKAKY 334
Score = 58.8 bits (122), Expect(2) = 2e-023
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +1
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 1 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 126
>gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR51 5' end, mRNA sequence
Length = 942
Score = 58.8 bits (122), Expect(3) = 3e-023
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 713 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 838
Score = 54.7 bits (113), Expect(3) = 3e-023
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +2
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 404 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 577
Score = 33.1 bits (66), Expect(3) = 3e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +2
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 611 LLRYFNPVGAHPSGQIGEDPK 673
>gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAE04 5' end, mRNA sequence
Length = 906
Score = 58.8 bits (122), Expect(3) = 3e-023
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 713 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 838
Score = 54.7 bits (113), Expect(3) = 3e-023
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +2
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 404 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 577
Score = 33.1 bits (66), Expect(3) = 3e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +2
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 611 LLRYFNPVGAHPSGQIGEDPK 673
>gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHV83 5' end, mRNA sequence
Length = 880
Score = 58.8 bits (122), Expect(3) = 3e-023
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 713 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 838
Score = 54.7 bits (113), Expect(3) = 3e-023
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +2
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 404 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 577
Score = 33.1 bits (66), Expect(3) = 3e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +2
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 611 LLRYFNPVGAHPSGQIGEDPK 673
>gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICME12 5' end, mRNA sequence
Length = 852
Score = 58.8 bits (122), Expect(3) = 3e-023
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +3
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 711 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 836
Score = 54.7 bits (113), Expect(3) = 3e-023
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +3
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 402 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 575
Score = 33.1 bits (66), Expect(3) = 3e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +3
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 609 LLRYFNPVGAHPSGQIGEDPK 671
>gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD946 3' end, mRNA sequence
Length = 847
Score = 58.8 bits (122), Expect(3) = 3e-023
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 704 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 829
Score = 54.7 bits (113), Expect(3) = 3e-023
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +2
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 395 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 568
Score = 33.1 bits (66), Expect(3) = 3e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +2
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 602 LLRYFNPVGAHPSGQIGEDPK 664
>gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 5', mRNA sequence
Length = 801
Score = 58.8 bits (122), Expect(3) = 3e-023
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +3
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 669 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 794
Score = 54.7 bits (113), Expect(3) = 3e-023
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +3
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 360 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 533
Score = 33.1 bits (66), Expect(3) = 3e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +3
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 567 LLRYFNPVGAHPSGQIGEDPK 629
>gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 5', mRNA sequence
Length = 800
Score = 58.8 bits (122), Expect(3) = 3e-023
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +1
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 667 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 792
Score = 54.7 bits (113), Expect(3) = 3e-023
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +1
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 358 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 531
Score = 33.1 bits (66), Expect(3) = 3e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +1
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 565 LLRYFNPVGAHPSGQIGEDPK 627
>gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 5', mRNA sequence
Length = 781
Score = 58.8 bits (122), Expect(3) = 3e-023
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +3
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 642 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 767
Score = 54.7 bits (113), Expect(3) = 3e-023
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +3
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 333 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 506
Score = 33.1 bits (66), Expect(3) = 3e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +3
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 540 LLRYFNPVGAHPSGQIGEDPK 602
>gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 5', mRNA sequence
Length = 691
Score = 58.8 bits (122), Expect(3) = 3e-023
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
A+G P L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 380 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 505
Score = 54.7 bits (113), Expect(3) = 3e-023
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +2
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 71 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 244
Score = 33.1 bits (66), Expect(3) = 3e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +2
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 278 LLRYFNPVGAHPSGQIGEDPK 340
>gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFU78 3' end, mRNA sequence
Length = 808
Score = 61.1 bits (127), Expect(3) = 5e-023
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = -1 / +2
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL +LE M S G + L++SS+ YG+P ++P TE P +NPYG+ K E+I D
Sbjct: 359 TLNLLEMMISQGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPYGRTKLFIEEICRD 532
Score = 51.9 bits (107), Expect(3) = 5e-023
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = -1 / +2
Query: 653 PGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
P L V G DY T DGT +RDYI V DL D H AL+K
Sbjct: 683 PELTVFGNDYQTKDGTGVRDYIHVMDLSDGHTAALDK 793
Score = 32.7 bits (65), Expect(3) = 5e-023
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1 / +2
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G +GE PR
Sbjct: 566 LLRYFNPVGAHPSGFIGEDPR 628
>gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE31 3' end, mRNA sequence
Length = 547
Score = 61.1 bits (127), Expect(3) = 6e-023
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = -1 / +2
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL +LE M S G + L++SS+ YG+P ++P TE P +NPYG+ K E+I D
Sbjct: 47 TLNLLEMMISQGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPYGRTKLFIEEICRD 220
Score = 51.9 bits (107), Expect(3) = 6e-023
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = -1 / +2
Query: 653 PGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKALNK 543
P L V G DY T DGT +RDYI V DL D H AL+K
Sbjct: 371 PELTVFGNDYQTKDGTGVRDYIHVMDLSDGHTAALDK 481
Score = 32.7 bits (65), Expect(3) = 6e-023
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1 / +2
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G +GE PR
Sbjct: 254 LLRYFNPVGAHPSGFIGEDPR 316
>gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_E08_A029 5', mRNA sequence
Length = 810
Score = 56.5 bits (117), Expect(3) = 1e-022
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = -1 / +2
Query: 668 ALGVIPGLKVKGTDYPTADGTCIRDYIDVTDLVDAHVKAL 549
A+G P L V G DY T DGT +RDYI V DL D H+ AL
Sbjct: 674 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISAL 793
Score = 54.7 bits (113), Expect(3) = 1e-022
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -1 / +2
Query: 1016 TLLILEAMASHGVQTLIYSSTCATYGEPDKMPITEATP*FPINPYGKAKKMAEDIIID 843
TL + E MA HG + +++SS+ YG+P +P E +NPYG+ K E+I D
Sbjct: 365 TLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARD 538
Score = 33.1 bits (66), Expect(3) = 1e-022
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +2
Query: 779 LHRYFNVIGSDPEGRLGEAPR 717
L RYFN +G+ P G++GE P+
Sbjct: 572 LLRYFNPVGAHPSGQIGEDPK 634
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 495,280,552
Number of Sequences: 355925
Number of extensions: 6730428
Number of successful extensions: 31671
Number of sequences better than 1.0e-020: 33
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 15265090200
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)