TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071418.2.1
(1432 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U39301.1|PTU39301 Pinus taeda xylem caffeic acid O-methy... 104 6e-029
gb|CF398420.1|CF398420 RTDS3_12_G12.g1_A022 Drought-stresse... 102 2e-028
gb|U70873.1|PRU70873 Pinus radiata O-methyltransferase (omt... 100 4e-028
gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clon... 102 4e-027
gb|CF664309.1|CF664309 RTCNT1_9_A12.b1_A029 Root control Pi... 96 8e-027
gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clon... 102 1e-026
gb|CF665309.1|CF665309 RTCNT1_15_E12.b1_A029 Root control P... 102 2e-026
gb|CF387289.1|CF387289 RTDR1_12_B04.b1_A015 Loblolly pine r... 102 2e-026
gb|CF478857.1|CF478857 RTWW3_15_E06.g1_A022 Well-watered lo... 102 3e-026
gb|DR385848.1|DR385848 RTHG1_11_F05.b1_A029 Roots plus adde... 102 3e-026
gb|CF390447.1|CF390447 RTDR2_19_C10.g1_A021 Loblolly pine r... 102 4e-026
gb|CF665567.1|CF665567 RTCNT1_16_G10.g1_A029 Root control P... 83 5e-026
gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism... 100 5e-026
gb|CF665472.1|CF665472 RTCNT1_16_E12.b1_A029 Root control P... 102 1e-025
gb|CX652953.1|CX652953 COLD1_62_B07.g1_A029 Root cold Pinus... 102 1e-025
gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus pota... 94 4e-024
gb|DR386464.1|DR386464 RTHG1_15_H04.b1_A029 Roots plus adde... 102 1e-023
gb|DR090448.1|DR090448 RTAL1_15_D01.b1_A029 Roots plus adde... 102 1e-023
gb|CO164320.1|CO164320 FLD1_47_F03.b1_A029 Root flooded Pin... 101 2e-023
gb|DR388552.1|DR388552 RTHG1_29_A07.b1_A029 Roots plus adde... 101 3e-023
gb|CO164394.1|CO164394 FLD1_47_F03.g1_A029 Root flooded Pin... 101 4e-023
gb|DR384861.1|DR384861 RTHG1_5_C09.b1_A029 Roots plus added... 101 4e-023
gb|DR386637.1|DR386637 RTHG1_16_B04.g1_A029 Roots plus adde... 102 5e-023
gb|CF385489.1|CF385489 RTDR1_4_C03.b1_A015 Loblolly pine ro... 86 6e-023
gb|CX714803.1|CX714803 RTPQ1_27_C08.b1_A032 Roots treated w... 100 8e-023
gb|CO167211.1|CO167211 FLD1_67_C10.g1_A029 Root flooded Pin... 100 1e-022
gb|CO167139.1|CO167139 FLD1_67_C10.b1_A029 Root flooded Pin... 100 1e-022
gb|DR742592.1|DR742592 RTCU1_5_F03.b2_A029 Roots plus added... 98 3e-022
gb|CX646520.1|CX646520 COLD1_9_H01.g1_A029 Root cold Pinus ... 106 3e-022
gb|CX651603.1|CX651603 COLD1_53_C02.g1_A029 Root cold Pinus... 106 3e-022
gb|DR118474.1|DR118474 RTMG1_17_F04.b1_A029 Roots minus mag... 106 4e-022
gb|DR118553.1|DR118553 RTMG1_17_F04.g1_A029 Roots minus mag... 106 4e-022
gb|DR384933.1|DR384933 RTHG1_5_C09.g1_A029 Roots plus added... 101 4e-022
gb|CO175244.1|CO175244 NDL1_53_A11.g1_A029 Needles control ... 94 7e-022
gb|DR025455.1|DR025455 STRS1_71_E09.g1_A034 Shoot tip pitch... 105 8e-022
gb|DR071353.1|DR071353 RTDK1_19_G05.b1_A029 Roots, dark Pin... 103 3e-021
gb|CX648030.1|CX648030 COLD1_26_C06.b1_A029 Root cold Pinus... 103 4e-021
gb|BX680279.1|BX680279 BX680279 RS Pinus pinaster cDNA clon... 94 5e-021
gb|CF388135.1|CF388135 RTDR2_1_H07.b1_A021 Loblolly pine ro... 102 5e-021
gb|DR015421.1|DR015421 STRS1_3_A05.g1_A034 Shoot tip pitch ... 102 5e-021
gb|AI812857.1|AI812857 20G9 Pine Lambda Zap Xylem library P... 102 7e-021
gb|CF385259.1|CF385259 RTDR1_2_H01.g1_A015 Loblolly pine ro... 102 7e-021
gb|CF387392.1|CF387392 RTDR1_12_B04.g1_A015 Loblolly pine r... 102 7e-021
gb|CF400142.1|CF400142 RTWW1_3_A06.g1_A015 Well-watered lob... 102 7e-021
gb|CF477891.1|CF477891 RTWW3_13_E06.g1_A022 Well-watered lo... 102 7e-021
gb|DR015347.1|DR015347 STRS1_3_A05.b1_A034 Shoot tip pitch ... 102 7e-021
gb|CO170121.1|CO170121 NDL1_11_G04.g1_A029 Needles control ... 101 1e-020
>gb|U39301.1|PTU39301 Pinus taeda xylem caffeic acid O-methyltransferase (COMT-1) mRNA,
partial cds
Length = 1279
Score = 104 bits (221), Expect(4) = 6e-029
Identities = 42/90 (46%), Positives = 58/90 (64%)
Frame = -1 / +1
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 649 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 828
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K +HDW D++C+KILKNC++AI
Sbjct: 829 TADAIFMKWIMHDWNDEDCIKILKNCRKAI 918
Score = 38.6 bits (78), Expect(4) = 6e-029
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / +1
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 1060 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 1158
Score = 28.6 bits (56), Expect(4) = 6e-029
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1 / +1
Query: 1318 SSQDLLQAHDELLHHSLCFAKSLALAVALDLRIPDAIHHHG 1196
S ++ LQ E + FA+SLA+ + L IPD I G
Sbjct: 100 SEEEELQGQAEAWKCTFAFAESLAVKCVVLLGIPDMIAREG 222
Score = 21.7 bits (41), Expect(4) = 6e-029
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 430 GKVIILDVVVGYKQSN 383
GKVII+DVV+ Q +
Sbjct: 928 GKVIIVDVVLDADQGD 975
>gb|CF398420.1|CF398420 RTDS3_12_G12.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_G12_A022 5', mRNA sequence
Length = 609
Score = 102 bits (217), Expect(3) = 2e-028
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 36 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 215
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 216 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 305
Score = 38.6 bits (78), Expect(3) = 2e-028
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 447 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 545
Score = 24.0 bits (46), Expect(3) = 2e-028
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1 / +3
Query: 430 GKVIILDVVVGYKQSNIKHQETQVMFD 350
GKVII+DVV+ Q + ++T+ D
Sbjct: 315 GKVIIVDVVLDADQGDNTDKKTKKAVD 395
>gb|U70873.1|PRU70873 Pinus radiata O-methyltransferase (omt) mRNA, complete cds
Length = 1421
Score = 100 bits (214), Expect(4) = 4e-028
Identities = 41/90 (45%), Positives = 56/90 (62%)
Frame = -1 / +2
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P + DLPHVVA A S VQ V G+MFE++P
Sbjct: 656 FHSLNSLVDVGGGTGTAVAEIVRAYPFITGINYDLPHVVATASSLSGVQHVGGDMFETVP 835
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 836 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 925
Score = 39.1 bits (79), Expect(4) = 4e-028
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / +2
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 1067 GKERSEKEWKRILLEGGFSRYNIIEIPALQSVI 1165
Score = 29.0 bits (57), Expect(4) = 4e-028
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1 / +2
Query: 1318 SSQDLLQAHDELLHHSLCFAKSLALAVALDLRIPDAIHHHGA 1193
S ++ LQ E + FA+SLA+ + L IPD I G+
Sbjct: 104 SEEEELQGQAEAWKCTFAFAESLAVKCVVLLGIPDMIAREGS 229
Score = 21.7 bits (41), Expect(4) = 4e-028
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1 / +2
Query: 430 GKVIILDVVVGYKQSN 383
GKVII+DVV+ Q +
Sbjct: 935 GKVIIVDVVLDADQGD 982
>gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clone RS16A04, mRNA sequence
Length = 591
Score = 102 bits (218), Expect(2) = 4e-027
Identities = 40/90 (44%), Positives = 59/90 (65%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F G+ SLVD+ A+P ++ DLPHVVA AP V+ + G+MFE++P
Sbjct: 33 FDGLTSLVDIGGGTGTAIAEIVRAYPSIRGINYDLPHVVATAPHLPGVEHMGGDMFETVP 212
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K +HDWGD++C+KILK+C++AI
Sbjct: 213 SADAIFMKWIMHDWGDEDCIKILKSCRKAI 302
Score = 42.8 bits (87), Expect(2) = 4e-027
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWKKI +E GF YKI+ + SVI
Sbjct: 456 GKERTEEEWKKILSEGGFHCYKIITIPDFQSVI 554
>gb|CF664309.1|CF664309 RTCNT1_9_A12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_A12_A029 3', mRNA sequence
Length = 649
Score = 96.4 bits (204), Expect(3) = 8e-027
Identities = 39/90 (43%), Positives = 56/90 (62%)
Frame = -1 / +1
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 13 FHSLNSLVDVGGGTGTSVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 192
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW ++C+KIL+NC++AI
Sbjct: 193 TGDAIFMKWIMHDWNVEDCIKILQNCRKAI 282
Score = 39.1 bits (79), Expect(3) = 8e-027
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / +1
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 424 GKERSEKEWKRILLEGGFSRYNIIEIPALQSVI 522
Score = 24.0 bits (46), Expect(3) = 8e-027
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1 / +1
Query: 430 GKVIILDVVVGYKQSNIKHQETQVMFD 350
GKVII+DVV+ Q + ++T+ D
Sbjct: 292 GKVIIVDVVLDADQGDNTDKKTKKAVD 372
>gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clone RS14G09, mRNA sequence
Length = 549
Score = 102 bits (218), Expect(2) = 1e-026
Identities = 40/90 (44%), Positives = 59/90 (65%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F G+ SLVD+ A+P ++ DLPHVVA AP V+ + G+MFE++P
Sbjct: 33 FDGLTSLVDIGGGTGTAIAEIVRAYPSIRGINYDLPHVVATAPHLPGVEHMGGDMFETVP 212
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K +HDWGD++C+KILK+C++AI
Sbjct: 213 SADAIFMKWIMHDWGDEDCIKILKSCRKAI 302
Score = 41.4 bits (84), Expect(2) = 1e-026
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPV 251
G ER E+EWKKI +E GF YKI+ +
Sbjct: 456 GKERTEEEWKKILSEGGFHCYKIITI 533
>gb|CF665309.1|CF665309 RTCNT1_15_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_E12_A029 3', mRNA sequence
Length = 592
Score = 102 bits (217), Expect(3) = 2e-026
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +1
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 13 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 192
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 193 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 282
Score = 38.6 bits (78), Expect(3) = 2e-026
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / +1
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 424 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 522
Score = 21.7 bits (41), Expect(3) = 2e-026
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 430 GKVIILDVVVGYKQSN 383
GKVII+DVV+ Q +
Sbjct: 292 GKVIIVDVVLDADQGD 339
>gb|CF387289.1|CF387289 RTDR1_12_B04.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_B04_A015 3', mRNA
sequence
Length = 641
Score = 102 bits (217), Expect(3) = 2e-026
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 48 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 227
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 228 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 317
Score = 38.6 bits (78), Expect(3) = 2e-026
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 459 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 557
Score = 21.7 bits (41), Expect(3) = 2e-026
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1 / +3
Query: 430 GKVIILDVVVGYKQSN 383
GKVII+DVV+ Q +
Sbjct: 327 GKVIIVDVVLDADQGD 374
>gb|CF478857.1|CF478857 RTWW3_15_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_15_E06_A022 5', mRNA sequence
Length = 662
Score = 102 bits (217), Expect(3) = 3e-026
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / -3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 597 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 418
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 417 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 328
Score = 38.6 bits (78), Expect(3) = 3e-026
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / -3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 186 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 88
Score = 21.7 bits (41), Expect(3) = 3e-026
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1 / -3
Query: 430 GKVIILDVVVGYKQSN 383
GKVII+DVV+ Q +
Sbjct: 318 GKVIIVDVVLDADQGD 271
>gb|DR385848.1|DR385848 RTHG1_11_F05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_F05_A029 3', mRNA sequence
Length = 757
Score = 102 bits (217), Expect(3) = 3e-026
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 162 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 341
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 342 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 431
Score = 38.6 bits (78), Expect(3) = 3e-026
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 573 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 671
Score = 21.7 bits (41), Expect(3) = 3e-026
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1 / +3
Query: 430 GKVIILDVVVGYKQSN 383
GKVII+DVV+ Q +
Sbjct: 441 GKVIIVDVVLDADQGD 488
>gb|CF390447.1|CF390447 RTDR2_19_C10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_C10_A021 5', mRNA
sequence
Length = 847
Score = 102 bits (217), Expect(3) = 4e-026
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +1
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 235 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 414
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 415 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 504
Score = 38.6 bits (78), Expect(3) = 4e-026
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / +1
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 646 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 744
Score = 21.7 bits (41), Expect(3) = 4e-026
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 430 GKVIILDVVVGYKQSN 383
GKVII+DVV+ Q +
Sbjct: 514 GKVIIVDVVLDADQGD 561
>gb|CF665567.1|CF665567 RTCNT1_16_G10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_G10_A029 5', mRNA sequence
Length = 733
Score = 83.1 bits (175), Expect(3) = 5e-026
Identities = 37/94 (39%), Positives = 56/94 (59%)
Frame = -1 / -3
Query: 796 NALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLD 617
N + N+ +A+D+R +M V++ + F+ ++++VDV A PH++ LD
Sbjct: 692 NEIFNRALASDTRAVMASVVKVYDDGFKNVNTVVDVAGGTGSAISMIVEAHPHIRGINLD 513
Query: 616 LPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLK 515
LPHV+ AP+ V+ V GNMFE IP A AVFLK
Sbjct: 512 LPHVIDTAPALPGVEHVRGNMFEHIPRADAVFLK 411
Score = 47.3 bits (97), Expect(3) = 5e-026
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = -1 / -3
Query: 430 GKVIILDVVVGYKQSNIKHQETQVMFDLYMMAVNGVERDEQEWKKIFTEAGFKDYKILPV 251
GKVII+D ++G + ++ + ++ G ER E E+KKIF AG++ Y I +
Sbjct: 356 GKVIIVDAIIGEEVGCVQQMRLRSDIEMMAFTDGGKERTEDEFKKIFHLAGYRRYVITKL 177
Query: 250 IGDVSVIIEVY 218
II ++
Sbjct: 176 PSSPFSIIGIF 144
Score = 26.3 bits (51), Expect(3) = 5e-026
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1 / -3
Query: 493 DDECVKILKNCKQA 452
D++CV+ILK C +A
Sbjct: 410 DEQCVEILKTCHEA 369
>gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_B10_A029 5', mRNA sequence
Length = 777
Score = 100 bits (212), Expect(2) = 5e-026
Identities = 40/90 (44%), Positives = 56/90 (62%)
Frame = -1 / -1
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++S+VDV A+P +K DLPHVV+ AP V V G+MFES+P
Sbjct: 678 FHSLNSIVDVGGGTGTAVAEIVRAYPSIKGINYDLPHVVSTAPHLTGVDHVGGDMFESVP 499
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 498 MGDAIFMKWIMHDWDDEDCIKILKNCRKAI 409
Score = 42.3 bits (86), Expect(2) = 5e-026
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = -1 / -1
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWKK+ E+GF DY I+ + SVI
Sbjct: 267 GKERTEEEWKKLLWESGFGDYNIIDIPALQSVI 169
>gb|CF665472.1|CF665472 RTCNT1_16_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_E12_A029 3', mRNA sequence
Length = 597
Score = 102 bits (217), Expect(2) = 1e-025
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +1
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 13 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 192
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 193 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 282
Score = 38.6 bits (78), Expect(2) = 1e-025
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 429 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 527
>gb|CX652953.1|CX652953 COLD1_62_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_B07_A029 5', mRNA sequence
Length = 828
Score = 102 bits (217), Expect(2) = 1e-025
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / -3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 589 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 410
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 409 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 320
Score = 38.6 bits (78), Expect(2) = 1e-025
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / -3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 178 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 80
>gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_A10_A029 3', mRNA sequence
Length = 824
Score = 94.1 bits (199), Expect(2) = 4e-024
Identities = 35/67 (52%), Positives = 50/67 (74%)
Frame = -1 / +3
Query: 646 FPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILK 467
+P +K DLPHVVA AP V+ + G+MFE++P A A+F+K +HDWGD++C+KILK
Sbjct: 18 YPSIKGINYDLPHVVATAPHLLGVEHMGGDMFETVPSADAIFMKWIMHDWGDEDCIKILK 197
Query: 466 NCKQAIS 446
C++AIS
Sbjct: 198 RCRKAIS 218
Score = 41.8 bits (85), Expect(2) = 4e-024
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWKKI E GF YKI+ + SVI
Sbjct: 372 GKERTEEEWKKILLEGGFGRYKIITIPDFQSVI 470
>gb|DR386464.1|DR386464 RTHG1_15_H04.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_15_H04_A029 3', mRNA sequence
Length = 805
Score = 102 bits (218), Expect(2) = 1e-023
Identities = 40/90 (44%), Positives = 56/90 (62%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ I++LVDV A PH++ DLPHV+A AP+ VQ + GN+FES P
Sbjct: 87 FKDINTLVDVGGGRGEALSLIIEAHPHIRAINFDLPHVIATAPTLPGVQHMTGNLFESAP 266
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 267 SADAIFMKNFLHSWNDEDCIKLLNNCHQAL 356
Score = 28.1 bits (55), Expect(2) = 1e-023
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 471 GGERTRKQWNDLLQAAGFSISKIVGRNGTLTKVIE 575
>gb|DR090448.1|DR090448 RTAL1_15_D01.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_15_D01_A029 3', mRNA sequence
Length = 721
Score = 102 bits (218), Expect(2) = 1e-023
Identities = 40/90 (44%), Positives = 56/90 (62%)
Frame = -1 / +1
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ I++LVDV A PH++ DLPHV+A AP+ VQ + GN+FES P
Sbjct: 82 FKDINTLVDVGGGRGEALSLIIEAHPHIRAINFDLPHVIATAPTLPGVQHMTGNLFESAP 261
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 262 SADAIFMKNFLHSWNDEDCIKLLNNCHQAL 351
Score = 28.1 bits (55), Expect(2) = 1e-023
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / +1
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 466 GGERTRKQWNDLLQAAGFSISKIVGRNGTLTKVIE 570
>gb|CO164320.1|CO164320 FLD1_47_F03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_47_F03_A029 3', mRNA sequence
Length = 849
Score = 101 bits (215), Expect(3) = 2e-023
Identities = 39/90 (43%), Positives = 56/90 (62%)
Frame = -1 / -3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ I++LVDV A PH++ DLP V+A AP+ VQ ++GN+FES P
Sbjct: 565 FKDINTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFESAP 386
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 385 SADAIFMKNFLHSWNDEDCIKLLNNCHQAL 296
Score = 27.6 bits (54), Expect(3) = 2e-023
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / -3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 181 GGERTRKQWNDLLQGAGFSISKIVGRNGTLTKVIE 77
Score = 24.4 bits (47), Expect(3) = 2e-023
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1 / -3
Query: 985 FLVSDDVSTATLAPFVSLALQPI 917
+ S D+S+ +L PFV L P+
Sbjct: 826 YFTS*DISSRSLVPFVLLQTHPL 758
>gb|DR388552.1|DR388552 RTHG1_29_A07.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_A07_A029 3', mRNA sequence
Length = 794
Score = 101 bits (215), Expect(2) = 3e-023
Identities = 39/90 (43%), Positives = 56/90 (62%)
Frame = -1 / +1
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ I++LVDV A PH++ DLP V+A AP+ VQ ++GN+FES P
Sbjct: 208 FKDINTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFESAP 387
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 388 SADAIFMKNFLHSWNDEDCIKLLNNCHQAL 477
Score = 28.1 bits (55), Expect(2) = 3e-023
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / +1
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 592 GGERTRKQWNDLLQAAGFSISKIVGRNGTLTKVIE 696
>gb|CO164394.1|CO164394 FLD1_47_F03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_47_F03_A029 5', mRNA sequence
Length = 895
Score = 101 bits (215), Expect(2) = 4e-023
Identities = 39/90 (43%), Positives = 56/90 (62%)
Frame = -1 / -3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ I++LVDV A PH++ DLP V+A AP+ VQ ++GN+FES P
Sbjct: 683 FKDINTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFESAP 504
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 503 SADAIFMKNFLHSWNDEDCIKLLNNCHQAL 414
Score = 27.6 bits (54), Expect(2) = 4e-023
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / -3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 299 GGERTRKQWNDLLQGAGFSISKIVGRNGTLTKVIE 195
>gb|DR384861.1|DR384861 RTHG1_5_C09.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_5_C09_A029 3', mRNA sequence
Length = 705
Score = 101 bits (215), Expect(2) = 4e-023
Identities = 39/90 (43%), Positives = 56/90 (62%)
Frame = -1 / +2
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ I++LVDV A PH++ DLP V+A AP+ VQ ++GN+FES P
Sbjct: 5 FKDINTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFESAP 184
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 185 SADAIFMKNFLHSWNDEDCIKLLNNCHQAL 274
Score = 27.6 bits (54), Expect(2) = 4e-023
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / +2
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 389 GGERTRKQWNDLLQGAGFSISKIVGRNGTLTKVIE 493
>gb|DR386637.1|DR386637 RTHG1_16_B04.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_16_B04_A029 5', mRNA sequence
Length = 811
Score = 102 bits (218), Expect(2) = 5e-023
Identities = 40/90 (44%), Positives = 56/90 (62%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ I++LVDV A PH++ DLPHV+A AP+ VQ + GN+FES P
Sbjct: 507 FKDINTLVDVGGGRGEALSLIIEAHPHIRAINFDLPHVIATAPTLPGVQHMTGNLFESAP 686
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 687 SADAIFMKNFLHSWNDEDCIKLLNNCHQAL 776
Score = 29.5 bits (58), Expect(2) = 5e-023
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1 / +3
Query: 985 FLVSDDVSTATLAPFVSLALQPI 917
+ SDD+S+ +L PFV L P+
Sbjct: 246 YFTSDDISSRSLVPFVLLQTHPV 314
>gb|CF385489.1|CF385489 RTDR1_4_C03.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_4_C03_A015 3', mRNA
sequence
Length = 649
Score = 86.3 bits (182), Expect(4) = 6e-023
Identities = 32/62 (51%), Positives = 44/62 (70%)
Frame = -1 / +1
Query: 634 KCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQ 455
+ S PHVVA A S VQ V G+MFE++P A+F+K +HDW D++C+KILKNC++
Sbjct: 133 EASTTTSPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRK 312
Query: 454 AI 449
AI
Sbjct: 313 AI 318
Score = 38.6 bits (78), Expect(4) = 6e-023
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1 / +1
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVI 230
G ER E+EWK+I E GF Y I+ + SVI
Sbjct: 460 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 558
Score = 22.6 bits (43), Expect(4) = 6e-023
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLP 611
F ++SLVDV A+P ++ DLP
Sbjct: 48 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLP 155
Score = 21.7 bits (41), Expect(4) = 6e-023
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 430 GKVIILDVVVGYKQSN 383
GKVII+DVV+ Q +
Sbjct: 328 GKVIIVDVVLDADQGD 375
>gb|CX714803.1|CX714803 RTPQ1_27_C08.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_27_C08_A032 3', mRNA sequence
Length = 718
Score = 100 bits (212), Expect(2) = 8e-023
Identities = 39/89 (43%), Positives = 55/89 (61%)
Frame = -1 / +3
Query: 715 RGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPP 536
+ I++LVDV A PH++ DLPHV+A AP+ VQ + GN+FES P
Sbjct: 3 KDINTLVDVGGGRGEALSLIIEAHPHIRAINFDLPHVIATAPTLPGVQHMTGNLFESAPS 182
Query: 535 ATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 183 ADAIFMKNFLHSWNDEDCIKLLNNCHQAL 269
Score = 28.1 bits (55), Expect(2) = 8e-023
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 384 GGERTRKQWNDLLQAAGFSISKIVGRNGTLTKVIE 488
>gb|CO167211.1|CO167211 FLD1_67_C10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_67_C10_A029 5', mRNA sequence
Length = 852
Score = 100 bits (212), Expect(2) = 1e-022
Identities = 38/90 (42%), Positives = 56/90 (62%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ I++LVDV A PH++ DLP V+A AP+ VQ ++GN+FE+ P
Sbjct: 237 FKDINTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFENAP 416
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 417 SADAIFMKNFLHSWNDEDCIKLLNNCHQAL 506
Score = 27.6 bits (54), Expect(2) = 1e-022
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 621 GGERTRKQWNDLLQGAGFSISKIVGRNGTLTKVIE 725
>gb|CO167139.1|CO167139 FLD1_67_C10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_67_C10_A029 3', mRNA sequence
Length = 803
Score = 100 bits (212), Expect(2) = 1e-022
Identities = 38/90 (42%), Positives = 56/90 (62%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ I++LVDV A PH++ DLP V+A AP+ VQ ++GN+FE+ P
Sbjct: 210 FKDINTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFENAP 389
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 390 SADAIFMKNFLHSWNDEDCIKLLNNCHQAL 479
Score = 27.6 bits (54), Expect(2) = 1e-022
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 594 GGERTRKQWNDLLQGAGFSISKIVGRNGTLTKVIE 698
>gb|DR742592.1|DR742592 RTCU1_5_F03.b2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_5_F03_A029 3', mRNA sequence
Length = 713
Score = 98.2 bits (208), Expect(2) = 3e-022
Identities = 38/87 (43%), Positives = 54/87 (62%)
Frame = -1 / +3
Query: 709 IDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPAT 530
I++LVDV A PH++ DLP V+A AP+ VQ ++GN+FES P A
Sbjct: 6 INTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFESAPSAD 185
Query: 529 AVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K LH W D++C+K+L NC QA+
Sbjct: 186 AIFMKNFLHSWNDEDCIKLLNNCHQAL 266
Score = 28.1 bits (55), Expect(2) = 3e-022
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / +3
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 381 GGERTRKQWNDLLQAAGFSISKIVGRNGTLTKVIE 485
>gb|CX646520.1|CX646520 COLD1_9_H01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_H01_A029 5', mRNA sequence
Length = 830
Score = 106 bits (227), Expect = 3e-022
Identities = 47/117 (40%), Positives = 67/117 (57%)
Frame = -1 / -2
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+ N +LN+ MA ++R +M V + + F+ + +LVDV PH++
Sbjct: 766 EFNKILNEAMATNTRSVMASVAKMYEDGFKSMATLVDVGGGMGSALSIIVKEHPHIRGIN 587
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQA 452
LDLPHV+A AP V+ + GNMFE IP A AV +K LHDW D+ECVK+L+ A
Sbjct: 586 LDLPHVIATAPLITGVEHMEGNMFEHIPSADAVMMKWILHDWADEECVKLLRRSYDA 416
>gb|CX651603.1|CX651603 COLD1_53_C02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_53_C02_A029 5', mRNA sequence
Length = 816
Score = 106 bits (227), Expect = 3e-022
Identities = 47/117 (40%), Positives = 67/117 (57%)
Frame = -1 / +1
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+ N +LN+ MA ++R +M V + + F+ + +LVDV PH++
Sbjct: 430 EFNKILNEAMATNTRSVMASVAKMYEDGFKSMATLVDVGGGMGSALSIIVKEHPHIRGIN 609
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQA 452
LDLPHV+A AP V+ + GNMFE IP A AV +K LHDW D+ECVK+L+ A
Sbjct: 610 LDLPHVIATAPLITGVEHMEGNMFEHIPSADAVMMKWILHDWADEECVKLLRRSYDA 780
>gb|DR118474.1|DR118474 RTMG1_17_F04.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_F04_A029 3', mRNA sequence
Length = 775
Score = 106 bits (226), Expect = 4e-022
Identities = 46/117 (39%), Positives = 67/117 (57%)
Frame = -1 / +3
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+V+ + N+ MA ++R +M V + + F+ + +LVDV PH++
Sbjct: 21 EVSKIFNEAMATNTRSVMAFVAKMYEDGFKSVATLVDVGGGMGSALSIIVKEHPHIRGIN 200
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQA 452
LDLPHV+A AP V+ + GNMFE IP A AV +K LHDW D+ECVK+L+ A
Sbjct: 201 LDLPHVIATAPPITGVEHMEGNMFEHIPSADAVMMKWILHDWPDEECVKLLRRSYDA 371
>gb|DR118553.1|DR118553 RTMG1_17_F04.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_F04_A029 5', mRNA sequence
Length = 607
Score = 106 bits (226), Expect = 4e-022
Identities = 46/117 (39%), Positives = 67/117 (57%)
Frame = -1 / +3
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+V+ + N+ MA ++R +M V + + F+ + +LVDV PH++
Sbjct: 210 EVSKIFNEAMATNTRSVMAFVAKMYEDGFKSVATLVDVGGGMGSALSIIVKEHPHIRGIN 389
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQA 452
LDLPHV+A AP V+ + GNMFE IP A AV +K LHDW D+ECVK+L+ A
Sbjct: 390 LDLPHVIATAPPITGVEHMEGNMFEHIPSADAVMMKWILHDWPDEECVKLLRRSYDA 560
>gb|DR384933.1|DR384933 RTHG1_5_C09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_5_C09_A029 5', mRNA sequence
Length = 789
Score = 101 bits (215), Expect(2) = 4e-022
Identities = 39/90 (43%), Positives = 56/90 (62%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ I++LVDV A PH++ DLP V+A AP+ VQ ++GN+FES P
Sbjct: 411 FKDINTLVDVGGGRGEALSLITKAHPHIRAINFDLPQVIATAPTIPGVQHISGNLFESAP 590
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D++C+K+L NC QA+
Sbjct: 591 SADAIFMKNFLHSWNDEDCIKLLNNCHQAL 680
Score = 27.6 bits (54), Expect(2) = 4e-022
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1 / +3
Query: 985 FLVSDDVSTATLAPFVSLALQPI 917
+ S+D+S+ +L PFV L P+
Sbjct: 150 YFTSEDISSRSLVPFVLLQTHPV 218
>gb|CO175244.1|CO175244 NDL1_53_A11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_A11_A029 5', mRNA sequence
Length = 760
Score = 94.1 bits (199), Expect(3) = 7e-022
Identities = 35/90 (38%), Positives = 56/90 (62%)
Frame = -1 / +2
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F+ +++LVD+ A+PH++ DLP V+A AP+ VQ ++G++FE+ P
Sbjct: 308 FKDVNTLVDLGGGHGEALSLIIDAYPHIRAINFDLPQVIATAPTLPGVQHISGSLFETAP 487
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A A+F+K LH W D +C+K+L NC QA+
Sbjct: 488 SADAIFIKNFLHIWDDQDCIKLLSNCYQAV 577
Score = 29.5 bits (58), Expect(3) = 7e-022
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1 / +2
Query: 994 ASRFLVSDDVSTATLAPFVSLALQPI 917
A + +S D+S+ +L PFV L P+
Sbjct: 44 AKTYFISQDISSRSLVPFVLLQTHPV 121
Score = 24.4 bits (47), Expect(3) = 7e-022
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1 / +2
Query: 340 MAVNGVERDEQEWKKIFTEAGFKDYKI 260
++ G ER ++W ++ AGF KI
Sbjct: 680 LSPGGRERTRKQWNELLKAAGFSLSKI 760
>gb|DR025455.1|DR025455 STRS1_71_E09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_71_E09_A034 5', mRNA sequence
Length = 665
Score = 105 bits (224), Expect = 8e-022
Identities = 46/117 (39%), Positives = 67/117 (57%)
Frame = -1 / -3
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+V+ + N+ MA ++R +M V + + F+ + +LVDV PH++
Sbjct: 597 EVSKIFNEAMATNTRSVMASVAKMYEDGFKSVATLVDVGGGMGSALSIIVKEHPHIRGIN 418
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQA 452
LDLPHV+A AP V+ + GNMFE IP A AV +K LHDW D+ECVK+L+ A
Sbjct: 417 LDLPHVIATAPPITGVEHMEGNMFEHIPSADAVMMKWILHDWPDEECVKLLRRSYDA 247
>gb|DR071353.1|DR071353 RTDK1_19_G05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_G05_A029 3', mRNA sequence
Length = 743
Score = 103 bits (220), Expect = 3e-021
Identities = 46/115 (40%), Positives = 64/115 (55%)
Frame = -1 / +3
Query: 796 NALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLD 617
N + N+ MA ++R +M V + + F + +LVDV PH++ LD
Sbjct: 105 NKIFNEAMATNTRSVMASVAKMYEDGFMSMATLVDVGGGMGSALSIIVKEHPHIRGINLD 284
Query: 616 LPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQA 452
LPHV+A AP V+ + GNMFE IP A AV +K LHDW D+ECVK+L+ A
Sbjct: 285 LPHVIATAPPITGVEHMEGNMFEHIPSADAVMMKWILHDWADEECVKLLRRSYDA 449
>gb|CX648030.1|CX648030 COLD1_26_C06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_26_C06_A029 3', mRNA sequence
Length = 820
Score = 103 bits (219), Expect = 4e-021
Identities = 46/115 (40%), Positives = 64/115 (55%)
Frame = -1 / +3
Query: 796 NALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLD 617
N + N+ MA ++R +M V + + F + +LVDV PH++ LD
Sbjct: 66 NKIFNEAMATNTRSVMASVAKMYEDGFMSMATLVDVGGGMGSALSIIVKEHPHIRGINLD 245
Query: 616 LPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQA 452
LPHV+A AP V+ + GNMFE IP A AV +K LHDW D+ECVK+L+ A
Sbjct: 246 LPHVIATAPPITGVKHMEGNMFEHIPSADAVMMKWILHDWADEECVKLLRRSYDA 410
>gb|BX680279.1|BX680279 BX680279 RS Pinus pinaster cDNA clone RS41D07, mRNA sequence
Length = 649
Score = 94.1 bits (199), Expect(2) = 5e-021
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = -1 / +2
Query: 703 SLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIPPATAV 524
+LVDV A PH++ DLP V+A AP+ VQ ++GN+FES P A A+
Sbjct: 2 TLVDVGGGRGEALNLIIEAHPHIRAINFDLPQVIATAPTIPGVQHMSGNLFESAPSADAI 181
Query: 523 FLKKTLHDWGDDECVKILKNCKQAI 449
F+K LH W D++C+K+L NC QA+
Sbjct: 182 FMKNFLHSWNDEDCIKLLNNCHQAL 256
Score = 28.1 bits (55), Expect(2) = 5e-021
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / +2
Query: 328 GVERDEQEWKKIFTEAGFKDYKILPVIGDVSVIIE 224
G ER ++W + AGF KI+ G ++ +IE
Sbjct: 371 GGERTRKQWNDLLQAAGFSISKIVGRNGTLTKVIE 475
>gb|CF388135.1|CF388135 RTDR2_1_H07.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_H07_A021 3', mRNA
sequence
Length = 644
Score = 102 bits (218), Expect = 5e-021
Identities = 45/117 (38%), Positives = 64/117 (54%)
Frame = -1 / -2
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+ N + N+ MA +R +M V + + F+ + +LVDV PH++
Sbjct: 616 EFNKIFNEAMATSTRSVMASVAKMYEDGFKSMATLVDVGGGMGSALSIIVKEHPHIRGIN 437
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQA 452
LDLPHV+A AP V+ + GNMFE IP A V +K LHDW D+ECVK+L+ A
Sbjct: 436 LDLPHVIATAPLITGVEHMEGNMFEHIPSADTVMMKWILHDWADEECVKLLRRSYDA 266
>gb|DR015421.1|DR015421 STRS1_3_A05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_A05_A034 5', mRNA sequence
Length = 900
Score = 102 bits (218), Expect = 5e-021
Identities = 45/117 (38%), Positives = 64/117 (54%)
Frame = -1 / +2
Query: 802 DVNALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSV 623
+ N + N+ MA +R +M V + + F+ + +LVDV PH++
Sbjct: 5 EFNKIFNEAMATSTRSVMASVAKMYEDGFKSMATLVDVGGGMGSALSIIVKEHPHIRGIN 184
Query: 622 LDLPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQA 452
LDLPHV+A AP V+ + GNMFE IP A V +K LHDW D+ECVK+L+ A
Sbjct: 185 LDLPHVIATAPLITGVEHMEGNMFEHIPSADTVMMKWILHDWADEECVKLLRRSYDA 355
>gb|AI812857.1|AI812857 20G9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 535
Score = 102 bits (217), Expect = 7e-021
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 171 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 350
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 351 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 440
>gb|CF385259.1|CF385259 RTDR1_2_H01.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_H01_A015 5', mRNA
sequence
Length = 671
Score = 102 bits (217), Expect = 7e-021
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +1
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 325 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 504
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 505 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 594
>gb|CF387392.1|CF387392 RTDR1_12_B04.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_B04_A015 5', mRNA
sequence
Length = 752
Score = 102 bits (217), Expect = 7e-021
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 345 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 524
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 525 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 614
>gb|CF400142.1|CF400142 RTWW1_3_A06.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_3_A06_A015 5', mRNA sequence
Length = 722
Score = 102 bits (217), Expect = 7e-021
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +2
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 269 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 448
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 449 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 538
>gb|CF477891.1|CF477891 RTWW3_13_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_E06_A022 5', mRNA sequence
Length = 721
Score = 102 bits (217), Expect = 7e-021
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1 / +3
Query: 718 FRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFESIP 539
F ++SLVDV A+P ++ DLPHVVA A S VQ V G+MFE++P
Sbjct: 396 FHSLNSLVDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVP 575
Query: 538 PATAVFLKKTLHDWGDDECVKILKNCKQAI 449
A+F+K +HDW D++C+KILKNC++AI
Sbjct: 576 TGDAIFMKWIMHDWNDEDCIKILKNCRKAI 665
>gb|DR015347.1|DR015347 STRS1_3_A05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_A05_A034 3', mRNA sequence
Length = 884
Score = 102 bits (217), Expect = 7e-021
Identities = 45/115 (39%), Positives = 63/115 (54%)
Frame = -1 / +3
Query: 796 NALLNKGMAADSRFLMPIVLRECGETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLD 617
N + N+ MA +R +M V + + F+ + +LVDV PH++ LD
Sbjct: 3 NKIFNEAMATSTRSVMASVAKMYEDGFKSMATLVDVGGGMGSALSIIVKEHPHIRGINLD 182
Query: 616 LPHVVAGAPSDGNVQFVAGNMFESIPPATAVFLKKTLHDWGDDECVKILKNCKQA 452
LPHV+A AP V+ + GNMFE IP A V +K LHDW D+ECVK+L+ A
Sbjct: 183 LPHVIATAPLITGVEHMEGNMFEHIPSADTVMMKWILHDWADEECVKLLRRSYDA 347
>gb|CO170121.1|CO170121 NDL1_11_G04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_11_G04_A029 5', mRNA sequence
Length = 791
Score = 101 bits (216), Expect = 1e-020
Identities = 41/92 (44%), Positives = 54/92 (58%)
Frame = -1 / +2
Query: 724 ETFRGIDSLVDVXXXXXXXXXXXXXAFPHLKCSVLDLPHVVAGAPSDGNVQFVAGNMFES 545
E F+ + LVDV +PH+ D+PHVVA AP V+ V+G+MFES
Sbjct: 59 EGFKEVQELVDVGGGVGSTLNLIVSRYPHISAINFDIPHVVADAPHYPAVKHVSGDMFES 238
Query: 544 IPPATAVFLKKTLHDWGDDECVKILKNCKQAI 449
+P AVF+K LHDW DD C K+LKNC +A+
Sbjct: 239 VPSGQAVFMKWILHDWSDDHCRKLLKNCHKAL 334
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 716,196,535
Number of Sequences: 355925
Number of extensions: 9791999
Number of successful extensions: 55337
Number of sequences better than 1.0e-020: 48
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 22452845490
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)