TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070703.2.1
(1214 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF396564.1|CF396564 RTDS2_22_F11.g1_A021 Drought-stresse... 270 e-117
gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus adde... 363 e-101
gb|BX682993.1|BX682993 BX682993 Pinus pinaster differenciat... 319 e-100
gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciat... 358 6e-098
gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pin... 353 2e-096
gb|DT637598.1|DT637598 EST1152529 Normalized pine embryo li... 224 4e-095
gb|BX678625.1|BX678625 BX678625 RS Pinus pinaster cDNA clon... 225 3e-094
gb|DR057850.1|DR057850 RTNIT1_8_E08.b1_A029 Roots minus nit... 261 6e-069
gb|DR693051.1|DR693051 EST1083139 Normalized pine embryo li... 224 5e-067
gb|DR052757.1|DR052757 RTCA1_6_E04.g1_A029 Roots minus calc... 238 7e-067
gb|CO197051.1|CO197051 GEO1_3_C05.g1_A029 Root gravitropism... 226 5e-064
gb|DR057937.1|DR057937 RTNIT1_8_E08.g1_A029 Roots minus nit... 197 5e-050
gb|DR099748.1|DR099748 STRR1_58_E10.b1_A033 Stem Response R... 186 2e-046
gb|DR388190.1|DR388190 RTHG1_26_E04.g1_A029 Roots plus adde... 179 4e-044
gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblo... 108 1e-042
gb|DR071198.1|DR071198 RTDK1_18_F12.b1_A029 Roots, dark Pin... 172 5e-042
gb|DR071265.1|DR071265 RTDK1_18_F12.g1_A029 Roots, dark Pin... 168 8e-041
gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from lobl... 108 1e-040
gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblo... 108 1e-040
gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblo... 108 1e-040
gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblo... 108 1e-040
gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control P... 108 1e-040
gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control P... 108 1e-040
gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stresse... 108 1e-040
gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control P... 108 4e-040
gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo li... 106 5e-040
gb|CO166148.1|CO166148 FLD1_59_E03.g1_A029 Root flooded Pin... 164 1e-039
gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo li... 107 1e-037
gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo li... 108 1e-034
gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus adde... 70 3e-029
gb|DT626458.1|DT626458 EST1158382 Sequencing ESTs from lobl... 108 2e-028
gb|CX648556.1|CX648556 COLD1_29_A03.g1_A029 Root cold Pinus... 108 2e-028
gb|CO196982.1|CO196982 GEO1_3_C05.b1_A029 Root gravitropism... 90 2e-028
gb|AI812993.1|AI812993 2E11 Pine Lambda Zap Xylem library P... 106 6e-028
gb|DR056997.1|DR056997 RTNIT1_1_H08.g1_A029 Roots minus nit... 107 1e-027
gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo li... 67 1e-025
gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clon... 72 5e-025
gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response R... 72 1e-024
gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control P... 69 7e-023
gb|DN613948.1|DN613948 EST966998 Subtracted pine embryo lib... 108 9e-023
gb|CV034239.1|CV034239 RTNACL1_39_C12.g1_A029 Roots plus ad... 107 2e-022
gb|DR054191.1|DR054191 RTCA1_15_F12.g1_A029 Roots minus cal... 107 2e-022
gb|DR178301.1|DR178301 RTMNUT1_10_G12.g1_A029 Roots minus m... 106 2e-022
>gb|CF396564.1|CF396564 RTDS2_22_F11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_F11_A021 5', mRNA sequence
Length = 683
Score = 270 bits (583), Expect(2) = e-117
Identities = 108/141 (76%), Positives = 122/141 (86%)
Frame = -1 / +3
Query: 848 KQSNMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDY 669
+ S++ V ILRYFNVIGSDPEGRLGEAPRPELR HGRISGACFDAA+GIIPGL+++GTDY
Sbjct: 261 RSSDLGVTILRYFNVIGSDPEGRLGEAPRPELRNHGRISGACFDAAMGIIPGLQIKGTDY 440
Query: 668 STADGTCVRDYIDVTDLVDAHVKALGKAQPGKVGIYNVGTGQGRSVTEFVEACKKATGAS 489
T DGTCVRDYI VTDL+DAHVKAL K Q G V +YNVGTG+G +V EFVE+CK+ATG +
Sbjct: 441 ETRDGTCVRDYIHVTDLIDAHVKALNKTQSGHVDVYNVGTGKGSTVKEFVESCKQATGVN 620
Query: 488 IKVEYLARRPGDYAEVYSDPS 426
I V L RRPGDYAEVYSDPS
Sbjct: 621 ITVVSLERRPGDYAEVYSDPS 683
Score = 187 bits (402), Expect(2) = 2e-077
Identities = 91/135 (67%), Positives = 104/135 (77%)
Frame = +1 / -2
Query: 427 DGSLYTSA*SPGLRARYSTLIEAPVAFLQASTNSVTDLPWPVPTL*IPTLPG*ALPRAFT 606
+GSLYTSA*SPGL + +T++ PVA LQ STNS T LP PVPTL* T P * L RA T
Sbjct: 682 EGSLYTSA*SPGLLSNETTVMLTPVACLQDSTNSFTVLPLPVPTL*TSTCPD*VLFRALT 503
Query: 607 *ASTRSVTSM*SLTQVPSAVE*SVPRTFSPGMIPKAASKQAPDIRPCSRSSGLGASPSRP 786
*AS +SVT M*SLT VPS V *SVP PGM+P AASK AP++RP R+SGLGASPS P
Sbjct: 502 *ASIKSVTWM*SLTHVPSLVS*SVPLICKPGMMPIAASKHAPEMRP*FRNSGLGASPSLP 323
Query: 787 SGSDPITLKYLKIMT 831
SGS+PITLKYLK++T
Sbjct: 322 SGSEPITLKYLKMVT 278
Score = 175 bits (376), Expect(2) = e-117
Identities = 72/88 (81%), Positives = 77/88 (87%)
Frame = -1 / +3
Query: 1115 MHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAMAAYNVNTLIYSSTCATYGEPDTMPIV 936
MHFAAVAYVGEST++PLRYYHNITSNTLTVLEAM A NV LIYSSTCATYGEP MPI
Sbjct: 3 MHFAAVAYVGESTLDPLRYYHNITSNTLTVLEAMVANNVKRLIYSSTCATYGEPKIMPIT 182
Query: 935 ETTPQNPINPYGKAKKMAEDIILDFTKS 852
E TPQ PINPYGKAKKMAE+II D+ +S
Sbjct: 183 EDTPQLPINPYGKAKKMAEEIIKDYARS 266
Score = 123 bits (263), Expect(2) = 2e-077
Identities = 62/84 (73%), Positives = 68/84 (80%)
Frame = +1 / -2
Query: 865 SKMMSSAIFFALPYGLIGF*GVVSTIGIVSGSP*VAHVLE*IRVFTLYAAIASRTVNVFD 1044
S ++SSAIF A P GLIG *GV S IGI+ GSP VA VLE*I +FTL A IAS+TV VFD
Sbjct: 253 SLIISSAIFLAFP*GLIGN*GVSSVIGIILGSPYVAQVLE*ISLFTLLATIASKTVKVFD 74
Query: 1045 VMLW*YLSGSIVLSPT*ATAAKCI 1116
VML *YLSGS VLSPT*ATAAKC+
Sbjct: 73 VML**YLSGSRVLSPT*ATAAKCM 2
Score = 90.4 bits (191), Expect(2) = 9e-037
Identities = 39/86 (45%), Positives = 56/86 (65%)
Frame = +3 / -1
Query: 858 CKI*DDVLRHLLCLTIWIDRILRSCFYNRHRIRFTIGCTRTRVNQSIYIICCHCLKNCQC 1037
C + + +L H L +I +DR LRS F H + F+I CT +N+S++II HC +N Q
Sbjct: 260 CIVFNYLLGHFLSFSIGVDRQLRSIFSYWHYLGFSICCTGAGINKSLHIIGNHCFQNSQG 81
Query: 1038 VRCYVVVVPEWLHCALTNISNSSKVH 1115
+ C VV+VP W+ L+NISNSSK+H
Sbjct: 80 I*CNVVIVP*WIKGTLSNISNSSKMH 3
Score = 84.5 bits (178), Expect(2) = 9e-037
Identities = 50/139 (35%), Positives = 80/139 (57%)
Frame = +3 / -1
Query: 426 RRIAVYLGIISRSTGKIFDLDRSSRCLLASFYKLSH*STLACSDIVDSNFAWLSFTKSFY 605
RRI V+ I++ S+ + D CLLA F +L + +TLA + I++ N LSF +S
Sbjct: 683 RRITVHFSIVTWSSLQRDYSDVDPSCLLARFNELFYSATLASAHIININMP*LSFIQSLN 504
Query: 606 VSIYKICDIDVVSNASSICSGVIGSTNL*PWNDSQSCIKASTGYPSMLA*LWPWSFS*PS 785
+SI I +DV+ + SI +I S +L* ND+ IK T +M++ L PW F+ P
Sbjct: 503 MSIN*ISYMDVIPDTCSISGFIISSLDL*TRNDAHCRIKTCTRNATMISQLRPWCFTKPP 324
Query: 786 LWV*SNHVEVS*DHDSHI* 842
+*+N+++V *+ + I*
Sbjct: 323 FRI*ANNIKVP*NGYTQI* 267
>gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_F04_A029 5', mRNA sequence
Length = 638
Score = 363 bits (787), Expect(2) = e-101
Identities = 146/177 (82%), Positives = 160/177 (90%)
Frame = -1 / +2
Query: 848 KQSNMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDY 669
++SNMAVM+LRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA GIIPGLKVRGTDY
Sbjct: 38 RKSNMAVMLLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIPGLKVRGTDY 217
Query: 668 STADGTCVRDYIDVTDLVDAHVKALGKAQPGKVGIYNVGTGQGRSVTEFVEACKKATGAS 489
ST DGTC+RDYIDVTDLVDAHVKAL +PG+V IYNVGTG+GRSV EFVEACK ATG +
Sbjct: 218 STPDGTCIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVN 397
Query: 488 IKVEYLARRPGDYAEVYSDPSKILMDLNWTAQYTDLGQSLAQAWKWQKAHPNGYASA 318
I VEYL RRPGDYAEVYSDPSKI +LNW+A+YT+L +SL AWKWQKAHPNGY S+
Sbjct: 398 ITVEYLGRRPGDYAEVYSDPSKINQELNWSAKYTNLKESLTVAWKWQKAHPNGYGSS 568
Score = 274 bits (593), Expect = 8e-073
Identities = 125/174 (71%), Positives = 138/174 (79%)
Frame = +1 / -3
Query: 322 DAYPFGCAFCHFHAWARLWPRSVYWAVQLRSMRIFDGSLYTSA*SPGLRARYSTLIEAPV 501
D YP GCAFCHF A RL R VY+A Q S I +GSLYTSA*SPGLR RYST+I PV
Sbjct: 564 DPYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPV 385
Query: 502 AFLQASTNSVTDLPWPVPTL*IPTLPG*ALPRAFT*ASTRSVTSM*SLTQVPSAVE*SVP 681
A LQASTNS+TDLP+PVPTL I T PG L AFT AST+SVTSM*SL QVPS V *SVP
Sbjct: 384 AALQASTNSLTDLPFPVPTLYILTSPGRTLTNAFTCASTKSVTSM*SLIQVPSGVL*SVP 205
Query: 682 RTFSPGMIPKAASKQAPDIRPCSRSSGLGASPSRPSGSDPITLKYLKIMTAIFD 843
TF+PG+IP AASK AP+IRPCSRSSGLGASP+ PSGS+PITLKYL +TA+ D
Sbjct: 204 LTFNPGIIPLAASKHAPEIRPCSRSSGLGASPNLPSGSEPITLKYLNSITAMLD 43
Score = 136 bits (291), Expect = 4e-031
Identities = 69/174 (39%), Positives = 100/174 (57%)
Frame = +3 / -2
Query: 318 G*RISVRVRLLPFPRLGKALAKIRVLGCPVEVHEDFRRIAVYLGIISRSTGKIFDLDRSS 497
G* I + V LPFP KA +I + PV + +F RI +Y IIS KI + S
Sbjct: 568 G*SIPIGVCFLPFPGYSKAFLEICIFCRPV*LLVNFGRITIYFCIISWPPTKILYCNIDS 389
Query: 498 RCLLASFYKLSH*STLACSDIVDSNFAWLSFTKSFYVSIYKICDIDVVSNASSICSGVIG 677
C LASFYKL * + ++IV F + + F++ I++IC I+VV + +I S +I
Sbjct: 388 SCSLASFYKLLD*PAFSSANIVYPYFTRTNINQCFHMRIHQICHINVVPDTGTIRSTIIC 209
Query: 678 STNL*PWNDSQSCIKASTGYPSMLA*LWPWSFS*PSLWV*SNHVEVS*DHDSHI 839
S+NL N+S CI+A T SM W W F *P+LW+*+N++E+ H+SH+
Sbjct: 208 SSNLQSRNNSPCCIEACTRDSSMFPKFWSWCFP*PALWI*TNYIEIPQ*HNSHV 47
Score = 27.6 bits (54), Expect(2) = e-101
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1 / +2
Query: 893 KKMAEDIILDFTKSKKQSNM 834
KKMAEDII DF++ + M
Sbjct: 2 KKMAEDIIQDFSRKSNMAVM 61
>gb|BX682993.1|BX682993 BX682993 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126F07 similar to UDP-glucose 4-epimerase (EC
5.1.3.2), mRNA sequence
Length = 624
Score = 319 bits (692), Expect(2) = e-100
Identities = 126/173 (72%), Positives = 146/173 (84%)
Frame = -1 / +2
Query: 848 KQSNMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDY 669
+ S++ V ILRYFNVIGSDPEGRLGEAPRPELR HGRISGACFDAA+GIIPGL+++GTDY
Sbjct: 104 RSSDLGVTILRYFNVIGSDPEGRLGEAPRPELRNHGRISGACFDAAMGIIPGLQIKGTDY 283
Query: 668 STADGTCVRDYIDVTDLVDAHVKALGKAQPGKVGIYNVGTGQGRSVTEFVEACKKATGAS 489
T DGTCVRDYI VTDL+DAHVKAL K Q G V +YNVGTG+G +V EFVE+CK+ATG +
Sbjct: 284 ETRDGTCVRDYIHVTDLIDAHVKALNKTQSGHVDVYNVGTGKGSTVKEFVESCKQATGVN 463
Query: 488 IKVEYLARRPGDYAEVYSDPSKILMDLNWTAQYTDLGQSLAQAWKWQKAHPNG 330
I + L RRPGDYAEVYSDPSKI +LNW AQYT+L +SLA AW W++ HP G
Sbjct: 464 ITIVSLERRPGDYAEVYSDPSKIQRELNWFAQYTNLTESLAVAWSWRRTHPVG 622
Score = 200 bits (431), Expect(2) = 2e-057
Identities = 103/167 (61%), Positives = 117/167 (70%)
Frame = +1 / -1
Query: 331 PFGCAFCHFHAWARLWPRSVYWAVQLRSMRIFDGSLYTSA*SPGLRARYSTLIEAPVAFL 510
P G A A+L R VY A QL S I +GSLYTSA*SPGL + + ++ PVA L
Sbjct: 621 PTG*VLRQLQATAKLSVRFVYCANQLSSR*ILEGSLYTSA*SPGLLSNETIVMLTPVACL 442
Query: 511 QASTNSVTDLPWPVPTL*IPTLPG*ALPRAFT*ASTRSVTSM*SLTQVPSAVE*SVPRTF 690
Q STNS T LP PVPTL* T P * L RA T*AS +SVT M*SLT VPS V *SVP
Sbjct: 441 QDSTNSFTVLPLPVPTL*TSTCPD*VLFRALT*ASIKSVTWM*SLTHVPSLVS*SVPLIC 262
Query: 691 SPGMIPKAASKQAPDIRPCSRSSGLGASPSRPSGSDPITLKYLKIMT 831
PGM+P AASK AP++RP R+SGLGASPS PSGS+PITLKYLK++T
Sbjct: 261 KPGMMPIAASKHAPEMRP*FRNSGLGASPSLPSGSEPITLKYLKMVT 121
Score = 95.0 bits (201), Expect(2) = 4e-021
Identities = 58/164 (35%), Positives = 91/164 (55%)
Frame = +3 / -3
Query: 351 PFPRLGKALAKIRVLGCPVEVHEDFRRIAVYLGIISRSTGKIFDLDRSSRCLLASFYKLS 530
P P + KI VL PV+ +FRRI V+ I++ S+ + D CLLA F +L
Sbjct: 601 PTPSNSQTFCKICVLCKPVKFSLNFRRITVHFSIVTWSSLQRDYSDVDPSCLLARFNELF 422
Query: 531 H*STLACSDIVDSNFAWLSFTKSFYVSIYKICDIDVVSNASSICSGVIGSTNL*PWNDSQ 710
+ +TLA + I++ N LSF +S +SI I +DV+ + SI +I S +L* ND+
Sbjct: 421 YSATLASAHIININMP*LSFIQSLNMSIN*ISYMDVIPDTCSISGFIISSLDL*TRNDAH 242
Query: 711 SCIKASTGYPSMLA*LWPWSFS*PSLWV*SNHVEVS*DHDSHI* 842
IK T +M++ L W F+ P +*+N+++V *+ + I*
Sbjct: 241 CRIKTCTRNATMISQLRSWCFTKPPFRI*ANNIKVP*NGYTQI* 110
Score = 68.4 bits (143), Expect(2) = e-100
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = -1 / +2
Query: 959 EPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
EP TMPI E TPQ PINPYGKAKKMAE+II D+ +S
Sbjct: 2 EPKTMPITEDTPQLPINPYGKAKKMAEEIIKDYARS 109
Score = 43.7 bits (89), Expect(2) = 2e-057
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +1 / -1
Query: 865 SKMMSSAIFFALPYGLIGF*GVVSTIGIVSGS 960
S ++SSAIF A P GLIG *GV S IGIV GS
Sbjct: 96 SLIISSAIFLAFP*GLIGN*GVSSVIGIVLGS 1
Score = 27.2 bits (53), Expect(2) = 4e-021
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3 / -3
Query: 858 CKI*DDVLRHLLCLTIWIDRILRSCFYNRHRIRF 959
C + + +L H L +I +DR LRS F H + F
Sbjct: 103 CIVFNYLLGHFLSFSIGVDRQLRSIFSYWHCLGF 2
>gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088D07, mRNA sequence
Length = 673
Score = 358 bits (775), Expect = 6e-098
Identities = 144/174 (82%), Positives = 157/174 (90%)
Frame = -1 / +1
Query: 839 NMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYSTA 660
NMAVM+LRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA GIIPGLKVRGTDYST
Sbjct: 1 NMAVMLLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIPGLKVRGTDYSTP 180
Query: 659 DGTCVRDYIDVTDLVDAHVKALGKAQPGKVGIYNVGTGQGRSVTEFVEACKKATGASIKV 480
DGTC+RDYIDVTDLVDAHVKAL +PG+V IYNVGTG+GRSV EFVEACK ATG +I V
Sbjct: 181 DGTCIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVNITV 360
Query: 479 EYLARRPGDYAEVYSDPSKILMDLNWTAQYTDLGQSLAQAWKWQKAHPNGYASA 318
EYL RRPGDYAEVYSDPSKI +L+W+A+YT+L +SL AWKWQKAHPNGY S+
Sbjct: 361 EYLGRRPGDYAEVYSDPSKINQELSWSAKYTNLKESLTVAWKWQKAHPNGYGSS 522
Score = 274 bits (593), Expect = 8e-073
Identities = 125/172 (72%), Positives = 139/172 (80%)
Frame = +1 / -3
Query: 322 DAYPFGCAFCHFHAWARLWPRSVYWAVQLRSMRIFDGSLYTSA*SPGLRARYSTLIEAPV 501
D YP GCAFCHF A RL R VY+A QL S I +GSLYTSA*SPGLR RYST+I PV
Sbjct: 518 DPYPLGCAFCHFQATVRLSLRFVYFADQLNSWLILEGSLYTSA*SPGLRPRYSTVILTPV 339
Query: 502 AFLQASTNSVTDLPWPVPTL*IPTLPG*ALPRAFT*ASTRSVTSM*SLTQVPSAVE*SVP 681
A LQASTNS+TDLP+PVPTL I T PG L +AFT AST+SVTSM*SL QVPS V *SVP
Sbjct: 338 AALQASTNSLTDLPFPVPTLYILTSPGRTLTKAFTCASTKSVTSM*SLIQVPSGVL*SVP 159
Query: 682 RTFSPGMIPKAASKQAPDIRPCSRSSGLGASPSRPSGSDPITLKYLKIMTAI 837
TF+PG+IP AASK AP+IRPCSRSSGLGASP+ PSGS+PITLKYL +TA+
Sbjct: 158 LTFNPGIIPLAASKHAPEIRPCSRSSGLGASPNLPSGSEPITLKYLNSITAM 3
Score = 135 bits (289), Expect = 7e-031
Identities = 68/174 (39%), Positives = 99/174 (56%)
Frame = +3 / -2
Query: 318 G*RISVRVRLLPFPRLGKALAKIRVLGCPVEVHEDFRRIAVYLGIISRSTGKIFDLDRSS 497
G* I + V LPFP KA +I + P + +F RI +Y IIS KI + S
Sbjct: 522 G*SIPIGVCFLPFPGYSKAFLEICIFCRPA*LLVNFGRITIYFCIISWPPTKILYCNIDS 343
Query: 498 RCLLASFYKLSH*STLACSDIVDSNFAWLSFTKSFYVSIYKICDIDVVSNASSICSGVIG 677
C LASFYKL * + ++IV F + +SF++ I++IC I+VV + +I S +I
Sbjct: 342 SCSLASFYKLLD*PAFSSANIVYPYFTRTNINQSFHMRIHQICHINVVPDTGTIRSTIIC 163
Query: 678 STNL*PWNDSQSCIKASTGYPSMLA*LWPWSFS*PSLWV*SNHVEVS*DHDSHI 839
S+N N+S CI+A T SM W W F *P+LW+*+N++E+ H+SH+
Sbjct: 162 SSNFQSRNNSPGCIEACTRDSSMFPKFWSWCFP*PALWI*TNYIEIPQ*HNSHV 1
>gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E03_A029 3', mRNA sequence
Length = 811
Score = 353 bits (765), Expect = 2e-096
Identities = 142/171 (83%), Positives = 154/171 (90%)
Frame = -1 / +1
Query: 830 VMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYSTADGT 651
VM+LRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA GIIPGLKVRGTDYST DGT
Sbjct: 1 VMLLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIPGLKVRGTDYSTPDGT 180
Query: 650 CVRDYIDVTDLVDAHVKALGKAQPGKVGIYNVGTGQGRSVTEFVEACKKATGASIKVEYL 471
C+RDYIDVTDLVDAHVKAL +PG+V IYNVGTG+GRSV EFVEACK ATG +I VEYL
Sbjct: 181 CIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYL 360
Query: 470 ARRPGDYAEVYSDPSKILMDLNWTAQYTDLGQSLAQAWKWQKAHPNGYASA 318
RRPGDYAEVYSDPSKI +LNW+A+YT+L +SL AWKWQKAHPNGY S+
Sbjct: 361 GRRPGDYAEVYSDPSKINQELNWSAKYTNLKESLTVAWKWQKAHPNGYGSS 513
Score = 267 bits (578), Expect = 9e-071
Identities = 122/166 (73%), Positives = 133/166 (80%)
Frame = +1 / -3
Query: 322 DAYPFGCAFCHFHAWARLWPRSVYWAVQLRSMRIFDGSLYTSA*SPGLRARYSTLIEAPV 501
D YP GCAFCHF A RL R VY+A Q S I +GSLYTSA*SPGLR RYST+I PV
Sbjct: 509 DPYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPV 330
Query: 502 AFLQASTNSVTDLPWPVPTL*IPTLPG*ALPRAFT*ASTRSVTSM*SLTQVPSAVE*SVP 681
A LQASTNS+TDLP+PVPTL I T PG L AFT AST+SVTSM*SL QVPS V *SVP
Sbjct: 329 AALQASTNSLTDLPFPVPTLYILTSPGRTLTNAFTCASTKSVTSM*SLIQVPSGVL*SVP 150
Query: 682 RTFSPGMIPKAASKQAPDIRPCSRSSGLGASPSRPSGSDPITLKYL 819
TF+PG+IP AASK AP+IRPCSRSSGLGASP+ PSGS+PITLKYL
Sbjct: 149 LTFNPGIIPLAASKHAPEIRPCSRSSGLGASPNLPSGSEPITLKYL 12
Score = 129 bits (276), Expect = 4e-029
Identities = 66/166 (39%), Positives = 95/166 (57%)
Frame = +3 / -2
Query: 318 G*RISVRVRLLPFPRLGKALAKIRVLGCPVEVHEDFRRIAVYLGIISRSTGKIFDLDRSS 497
G* I + V LPFP KA +I + PV + +F RI +Y IIS KI + S
Sbjct: 513 G*SIPIGVCFLPFPGYSKAFLEICIFCRPV*LLVNFGRITIYFCIISWPPTKILYCNIDS 334
Query: 498 RCLLASFYKLSH*STLACSDIVDSNFAWLSFTKSFYVSIYKICDIDVVSNASSICSGVIG 677
C LASFYKL * + ++IV F + + F++ I++IC I+VV + +I S +I
Sbjct: 333 SCSLASFYKLLD*PAFSSANIVYPYFTRTNINQCFHMRIHQICHINVVPDTGTIRSTIIC 154
Query: 678 STNL*PWNDSQSCIKASTGYPSMLA*LWPWSFS*PSLWV*SNHVEV 815
S+NL N+S CI+A T SM W W F *P+LW+*+N++E+
Sbjct: 153 SSNLQSRNNSPCCIEACTRDSSMFPKFWSWCFP*PALWI*TNYIEI 16
>gb|DT637598.1|DT637598 EST1152529 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH548 3' end, mRNA sequence
Length = 831
Score = 224 bits (484), Expect(2) = 4e-095
Identities = 93/117 (79%), Positives = 101/117 (86%)
Frame = -1 / +1
Query: 1202 PGRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVL 1023
P +LQFIYADLGD KAV +IF NAFDAV+HFAAVAYVGEST++PLRYYHNITSNTLTVL
Sbjct: 277 PNQLQFIYADLGDKKAVDEIFKNNAFDAVVHFAAVAYVGESTLDPLRYYHNITSNTLTVL 456
Query: 1022 EAMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
EAM A NV LIYSSTCATYGEP MPI E TPQ PINPYGKAKKMAE+II D+ +S
Sbjct: 457 EAMVANNVKRLIYSSTCATYGEPKIMPITEDTPQLPINPYGKAKKMAEEIIKDYARS 627
Score = 151 bits (325), Expect(2) = 9e-060
Identities = 78/108 (72%), Positives = 84/108 (77%)
Frame = +1 / -2
Query: 865 SKMMSSAIFFALPYGLIGF*GVVSTIGIVSGSP*VAHVLE*IRVFTLYAAIASRTVNVFD 1044
S ++SSAIF A P GLIG *GV S IGI+ GSP VA VLE*I +FTL A IAS+TV VFD
Sbjct: 614 SLIISSAIFLAFP*GLIGN*GVSSVIGIILGSPYVAQVLE*ISLFTLLATIASKTVKVFD 435
Query: 1045 VMLW*YLSGSIVLSPT*ATAAKCITASNAFSENIFFTALASPKSA*IN 1188
VML *YLSGS VLSPT*ATAAKC TASNA NI TA SPKSA*+N
Sbjct: 434 VML**YLSGSRVLSPT*ATAAKCTTASNALFLNISSTAFLSPKSA*MN 291
Score = 145 bits (311), Expect(2) = 4e-095
Identities = 56/69 (81%), Positives = 63/69 (91%)
Frame = -1 / +1
Query: 848 KQSNMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDY 669
+ S++ V ILRYFNVIGSDPEGRLGEAPRPELR HGRISGACFDAA+GIIPGL+++GTDY
Sbjct: 622 RSSDLGVTILRYFNVIGSDPEGRLGEAPRPELRNHGRISGACFDAAMGIIPGLQIKGTDY 801
Query: 668 STADGTCVR 642
T DGTCVR
Sbjct: 802 ETRDGTCVR 828
Score = 120 bits (256), Expect(2) = 8e-033
Identities = 51/112 (45%), Positives = 76/112 (67%)
Frame = +3 / -1
Query: 858 CKI*DDVLRHLLCLTIWIDRILRSCFYNRHRIRFTIGCTRTRVNQSIYIICCHCLKNCQC 1037
C + + +L H L +I +DR LRS F H + F+I CT +N+S++II HC +N Q
Sbjct: 621 CIVFNYLLGHFLSFSIGVDRQLRSIFSYWHYLGFSICCTGAGINKSLHIIGNHCFQNSQG 442
Query: 1038 VRCYVVVVPEWLHCALTNISNSSKVHNSVKCILRKYFLHSFGIA*VSINKLK 1193
+ C VV+VP W+ L+NISNSSK+H+ +KCI+ KYF++S + VSIN+L+
Sbjct: 441 I*CNVVIVP*WIKGTLSNISNSSKMHDCIKCIVFKYFIYSLFVTQVSINELQ 286
Score = 100 bits (212), Expect(2) = 9e-060
Identities = 44/63 (69%), Positives = 51/63 (80%)
Frame = +1 / -2
Query: 643 LTQVPSAVE*SVPRTFSPGMIPKAASKQAPDIRPCSRSSGLGASPSRPSGSDPITLKYLK 822
LT VPS V *SVP PGM+P AASK AP++RP R+SGLGASPS PSGS+PITLKYLK
Sbjct: 827 LTHVPSLVS*SVPLICKPGMMPIAASKHAPEMRP*FRNSGLGASPSLPSGSEPITLKYLK 648
Query: 823 IMT 831
++T
Sbjct: 647 MVT 639
Score = 41.4 bits (84), Expect(2) = 8e-033
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +3 / -1
Query: 654 SICSGVIGSTNL*PWNDSQSCIKASTGYPSMLA*LWPWSFS*PSLWV*SNHVEVS*DHDS 833
SI +I S +L* ND+ IK T +M++ L PW F+ P +*+N+++V *+ +
Sbjct: 816 SISGFIISSLDL*TRNDAHCRIKTCTRNATMISQLRPWCFTKPPFRI*ANNIKVP*NGYT 637
Query: 834 HI* 842
I*
Sbjct: 636 QI* 628
>gb|BX678625.1|BX678625 BX678625 RS Pinus pinaster cDNA clone RS12B09, mRNA sequence
Length = 542
Score = 225 bits (486), Expect(2) = 3e-094
Identities = 94/114 (82%), Positives = 100/114 (87%)
Frame = -1 / +1
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
LQFIYADLGD KAV +IF NAFDAVMHFAAVAYVGEST++PLRYYHNITSNTLTVLEAM
Sbjct: 4 LQFIYADLGDKKAVDEIFKNNAFDAVMHFAAVAYVGESTLDPLRYYHNITSNTLTVLEAM 183
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A NV LIYSSTCATYGEP TMPI E TPQ PINPYGKAKKMAE+II D+ +S
Sbjct: 184 VANNVKRLIYSSTCATYGEPKTMPITEDTPQLPINPYGKAKKMAEEIIKDYARS 345
Score = 153 bits (328), Expect(2) = 1e-059
Identities = 79/108 (73%), Positives = 85/108 (78%)
Frame = +1 / -1
Query: 865 SKMMSSAIFFALPYGLIGF*GVVSTIGIVSGSP*VAHVLE*IRVFTLYAAIASRTVNVFD 1044
S ++SSAIF A P GLIG *GV S IGIV GSP VA VLE*I +FTL A IAS+TV VFD
Sbjct: 332 SLIISSAIFLAFP*GLIGN*GVSSVIGIVLGSPYVAQVLE*ISLFTLLATIASKTVKVFD 153
Query: 1045 VMLW*YLSGSIVLSPT*ATAAKCITASNAFSENIFFTALASPKSA*IN 1188
VML *YLSGS VLSPT*ATAAKC+TASNA NI TA SPKSA*+N
Sbjct: 152 VML**YLSGSRVLSPT*ATAAKCMTASNALFLNISSTAFLSPKSA*MN 9
Score = 141 bits (302), Expect(2) = 3e-094
Identities = 54/67 (80%), Positives = 61/67 (91%)
Frame = -1 / +1
Query: 848 KQSNMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDY 669
+ S++ V ILRYFNVIGSDPEGRLGEAPRPELR HGRISGACFDAA+GIIPGL+++GTDY
Sbjct: 340 RSSDLGVTILRYFNVIGSDPEGRLGEAPRPELRNHGRISGACFDAAMGIIPGLQIKGTDY 519
Query: 668 STADGTC 648
T DGTC
Sbjct: 520 ETRDGTC 540
Score = 117 bits (250), Expect(2) = 6e-031
Identities = 50/112 (44%), Positives = 75/112 (66%)
Frame = +3 / -3
Query: 858 CKI*DDVLRHLLCLTIWIDRILRSCFYNRHRIRFTIGCTRTRVNQSIYIICCHCLKNCQC 1037
C + + +L H L +I +DR LRS F H + F+I CT +N+ ++II HC +N Q
Sbjct: 339 CIVFNYLLGHFLSFSIGVDRQLRSIFSYWHCLGFSICCTGAGINKPLHIIGNHCFQNSQG 160
Query: 1038 VRCYVVVVPEWLHCALTNISNSSKVHNSVKCILRKYFLHSFGIA*VSINKLK 1193
+ C VV+VP W+ AL+NISNSSK+H+ +KCI+ KYF++S + V IN+L+
Sbjct: 159 I*CNVVIVP*WIKGALSNISNSSKMHDCIKCIVFKYFIYSLFVTQVGINELQ 4
Score = 98.2 bits (208), Expect(2) = 1e-059
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = +1 / -1
Query: 646 TQVPSAVE*SVPRTFSPGMIPKAASKQAPDIRPCSRSSGLGASPSRPSGSDPITLKYLKI 825
T VPS V *SVP PGM+P AASK AP++RP R+SGLGASPS PSGS+PITLKYLK+
Sbjct: 542 THVPSLVS*SVPLICKPGMMPIAASKHAPEMRP*FRNSGLGASPSLPSGSEPITLKYLKM 363
Query: 826 MT 831
+T
Sbjct: 362 VT 357
Score = 37.7 bits (76), Expect(2) = 6e-031
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +3 / -3
Query: 654 SICSGVIGSTNL*PWNDSQSCIKASTGYPSMLA*LWPWSFS*PSLWV*SNHVEVS*DHDS 833
SI +I S +L* ND+ IK T +M++ L W F+ P +*+N+++V *+ +
Sbjct: 534 SISGFIISSLDL*TRNDAHCRIKTCTRNATMISQLRSWCFTKPPFRI*ANNIKVP*NGYT 355
Query: 834 HI* 842
I*
Sbjct: 354 QI* 346
>gb|DR057850.1|DR057850 RTNIT1_8_E08.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_E08_A029 3', mRNA sequence
Length = 748
Score = 261 bits (565), Expect = 6e-069
Identities = 105/134 (78%), Positives = 117/134 (87%)
Frame = -1 / +2
Query: 719 DAALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGKAQPGKVGIYNVGTGQG 540
DAA GIIPGLKVRGTDYST DGTC+RDYIDVTDLVDAHVKAL +PG+V IYNVGTG+G
Sbjct: 2 DAARGIIPGLKVRGTDYSTPDGTCIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKG 181
Query: 539 RSVTEFVEACKKATGASIKVEYLARRPGDYAEVYSDPSKILMDLNWTAQYTDLGQSLAQA 360
RSV EFVEACK ATG +I VEYL RRPGD+AEVYSDPSKI +LNW+A+YT+L +SL A
Sbjct: 182 RSVKEFVEACKAATGVNITVEYLGRRPGDHAEVYSDPSKINQELNWSAKYTNLKESLTVA 361
Query: 359 WKWQKAHPNGYASA 318
WKWQKAHPNGY S+
Sbjct: 362 WKWQKAHPNGYGSS 403
Score = 199 bits (429), Expect = 3e-050
Identities = 94/133 (70%), Positives = 102/133 (76%)
Frame = +1 / -2
Query: 322 DAYPFGCAFCHFHAWARLWPRSVYWAVQLRSMRIFDGSLYTSA*SPGLRARYSTLIEAPV 501
D YP GCAFCHF A RL R VY+A Q S I +GSLYTSA*SPGLR RYST+I PV
Sbjct: 399 DPYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPV 220
Query: 502 AFLQASTNSVTDLPWPVPTL*IPTLPG*ALPRAFT*ASTRSVTSM*SLTQVPSAVE*SVP 681
A LQASTNS+TDLP+PVPTL I T PG L AFT AST+SVTSM*SL QVPS V *SVP
Sbjct: 219 AALQASTNSLTDLPFPVPTLYILTSPGRTLTNAFTCASTKSVTSM*SLIQVPSGVL*SVP 40
Query: 682 RTFSPGMIPKAAS 720
TF+PG+IP AAS
Sbjct: 39 LTFNPGIIPLAAS 1
>gb|DR693051.1|DR693051 EST1083139 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADT74 3' end, mRNA sequence
Length = 691
Score = 224 bits (484), Expect(2) = 5e-067
Identities = 93/117 (79%), Positives = 101/117 (86%)
Frame = -1 / +2
Query: 1202 PGRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVL 1023
P +LQFIYADLGD KAV +IF NAFDAV+HFAAVAYVGEST++PLRYYHNITSNTLTVL
Sbjct: 269 PNQLQFIYADLGDKKAVDEIFKNNAFDAVVHFAAVAYVGESTLDPLRYYHNITSNTLTVL 448
Query: 1022 EAMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
EAM A NV LIYSSTCATYGEP MPI E TPQ PINPYGKAKKMAE+II D+ +S
Sbjct: 449 EAMVANNVKRLIYSSTCATYGEPKIMPITEDTPQLPINPYGKAKKMAEEIIKDYARS 619
Score = 151 bits (325), Expect(2) = 3e-042
Identities = 78/108 (72%), Positives = 84/108 (77%)
Frame = +1 / -2
Query: 865 SKMMSSAIFFALPYGLIGF*GVVSTIGIVSGSP*VAHVLE*IRVFTLYAAIASRTVNVFD 1044
S ++SSAIF A P GLIG *GV S IGI+ GSP VA VLE*I +FTL A IAS+TV VFD
Sbjct: 606 SLIISSAIFLAFP*GLIGN*GVSSVIGIILGSPYVAQVLE*ISLFTLLATIASKTVKVFD 427
Query: 1045 VMLW*YLSGSIVLSPT*ATAAKCITASNAFSENIFFTALASPKSA*IN 1188
VML *YLSGS VLSPT*ATAAKC TASNA NI TA SPKSA*+N
Sbjct: 426 VML**YLSGSRVLSPT*ATAAKCTTASNALFLNISSTAFLSPKSA*MN 283
Score = 120 bits (256), Expect = 2e-026
Identities = 51/112 (45%), Positives = 76/112 (67%)
Frame = +3 / -1
Query: 858 CKI*DDVLRHLLCLTIWIDRILRSCFYNRHRIRFTIGCTRTRVNQSIYIICCHCLKNCQC 1037
C + + +L H L +I +DR LRS F H + F+I CT +N+S++II HC +N Q
Sbjct: 613 CIVFNYLLGHFLSFSIGVDRQLRSIFSYWHYLGFSICCTGAGINKSLHIIGNHCFQNSQG 434
Query: 1038 VRCYVVVVPEWLHCALTNISNSSKVHNSVKCILRKYFLHSFGIA*VSINKLK 1193
+ C VV+VP W+ L+NISNSSK+H+ +KCI+ KYF++S + VSIN+L+
Sbjct: 433 I*CNVVIVP*WIKGTLSNISNSSKMHDCIKCIVFKYFIYSLFVTQVSINELQ 278
Score = 51.5 bits (106), Expect(2) = 5e-067
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -1 / +2
Query: 848 KQSNMAVMILRYFNVIGSDPEGRLGE 771
+ S++ V ILRYFNVIGSDPEGRLGE
Sbjct: 614 RSSDLGVTILRYFNVIGSDPEGRLGE 691
Score = 41.4 bits (84), Expect(2) = 3e-042
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +1 / -2
Query: 772 SPSRPSGSDPITLKYLKIMT 831
SPS PSGS+PITLKYLK++T
Sbjct: 690 SPSLPSGSEPITLKYLKMVT 631
>gb|DR052757.1|DR052757 RTCA1_6_E04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_6_E04_A029 5', mRNA sequence
Length = 805
Score = 238 bits (514), Expect(2) = 7e-067
Identities = 100/124 (80%), Positives = 108/124 (87%)
Frame = -1 / +3
Query: 1205 EPGRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTV 1026
EPGRLQFI ADLGD+KAV KIF+ENAFDAVMHFAAVAYVGEST++PLRYYHNITSNTLTV
Sbjct: 405 EPGRLQFICADLGDSKAVNKIFAENAFDAVMHFAAVAYVGESTIDPLRYYHNITSNTLTV 584
Query: 1025 LEAMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKSKK 846
LEAMAA+ V LIYSSTCATYGEP MPI E TPQ PINPYGKAKKMAEDII DF++
Sbjct: 585 LEAMAAHGVKKLIYSSTCATYGEPAKMPITEETPQVPINPYGKAKKMAEDIIQDFSRKSN 764
Query: 845 QSNM 834
+ M
Sbjct: 765 MAVM 776
Score = 189 bits (407), Expect = 4e-047
Identities = 95/130 (73%), Positives = 101/130 (77%)
Frame = +1 / -1
Query: 817 LKIMTAIFDCFFDFVKSKMMSSAIFFALPYGLIGF*GVVSTIGIVSGSP*VAHVLE*IRV 996
LK + +I F KS +MSSAIFFA PYG IG *GV S IGI++GSP*VAHVLE I
Sbjct: 793 LKYLNSITAMFDFLEKSWIMSSAIFFAFPYGFIGT*GVSSVIGILAGSP*VAHVLEYISF 614
Query: 997 FTLYAAIASRTVNVFDVMLW*YLSGSIVLSPT*ATAAKCITASNAFSENIFFTALASPKS 1176
FT AA+AS TVNV DVML *YL GSIVLSPT*ATAAKCITASNAFS NI FTAL SPKS
Sbjct: 613 FTPCAAMASNTVNVLDVML**YLRGSIVLSPT*ATAAKCITASNAFSANILFTALLSPKS 434
Query: 1177 A*IN*SLPGS 1206
A IN SLPGS
Sbjct: 433 AQINCSLPGS 404
Score = 132 bits (283), Expect(2) = 4e-033
Identities = 58/115 (50%), Positives = 76/115 (66%)
Frame = +3 / -3
Query: 861 KI*DDVLRHLLCLTIWIDRILRSCFYNRHRIRFTIGCTRTRVNQSIYIICCHCLKNCQCV 1040
KI D+VL H LC +IWI R LRS NRH RF I CT + Q ++ + H CQC+
Sbjct: 749 KILDNVLCHFLCFSIWIYRNLRSFLCNRHFSRFPISCTCA*IYQFLHPMRSHGF*YCQCI 570
Query: 1041 RCYVVVVPEWLHCALTNISNSSKVHNSVKCILRKYFLHSFGIA*VSINKLKPSGF 1205
C V++VP+ ++CAL +IS+SS+VH VKCI KYF++ F I VS NKL+PS F
Sbjct: 569 GCNVMIVPKRIYCALAHISHSSEVHYCVKCIFCKYFIYRFAITQVSTNKLQPSRF 405
Score = 37.3 bits (75), Expect(2) = 7e-067
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = -1 / +3
Query: 848 KQSNMAVMILRYFNVIG 798
++SNMAVM+LRYFNVIG
Sbjct: 753 RKSNMAVMLLRYFNVIG 803
Score = 29.9 bits (59), Expect(2) = 4e-033
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1 / -1
Query: 796 DPITLKYLKIMTAIFD 843
+PITLKYL +TA+FD
Sbjct: 805 EPITLKYLNSITAMFD 758
>gb|CO197051.1|CO197051 GEO1_3_C05.g1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_3_C05_A029 5', mRNA sequence
Length = 702
Score = 226 bits (488), Expect(2) = 5e-064
Identities = 94/117 (80%), Positives = 101/117 (86%)
Frame = -1 / +3
Query: 1202 PGRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVL 1023
P +LQFIYADLGD KAV +IF NAFDAVMHFAAVAYVGEST++PLRYYHNITSNTLTVL
Sbjct: 294 PNQLQFIYADLGDKKAVDEIFKNNAFDAVMHFAAVAYVGESTLDPLRYYHNITSNTLTVL 473
Query: 1022 EAMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
EAM A NV LIYSSTCATYGEP MPI E TPQ PINPYGKAKKMAE+II D+ +S
Sbjct: 474 EAMVANNVKRLIYSSTCATYGEPKIMPITEDTPQLPINPYGKAKKMAEEIIKDYARS 644
Score = 152 bits (327), Expect(2) = 9e-040
Identities = 78/108 (72%), Positives = 85/108 (78%)
Frame = +1 / -3
Query: 865 SKMMSSAIFFALPYGLIGF*GVVSTIGIVSGSP*VAHVLE*IRVFTLYAAIASRTVNVFD 1044
S ++SSAIF A P GLIG *GV S IGI+ GSP VA VLE*I +FTL A IAS+TV VFD
Sbjct: 631 SLIISSAIFLAFP*GLIGN*GVSSVIGIILGSPYVAQVLE*ISLFTLLATIASKTVKVFD 452
Query: 1045 VMLW*YLSGSIVLSPT*ATAAKCITASNAFSENIFFTALASPKSA*IN 1188
VML *YLSGS VLSPT*ATAAKC+TASNA NI TA SPKSA*+N
Sbjct: 451 VML**YLSGSRVLSPT*ATAAKCMTASNALFLNISSTAFLSPKSA*MN 308
Score = 120 bits (256), Expect = 2e-026
Identities = 51/112 (45%), Positives = 76/112 (67%)
Frame = +3 / -2
Query: 858 CKI*DDVLRHLLCLTIWIDRILRSCFYNRHRIRFTIGCTRTRVNQSIYIICCHCLKNCQC 1037
C + + +L H L +I +DR LRS F H + F+I CT +N+S++II HC +N Q
Sbjct: 638 CIVFNYLLGHFLSFSIGVDRQLRSIFSYWHYLGFSICCTGAGINKSLHIIGNHCFQNSQG 459
Query: 1038 VRCYVVVVPEWLHCALTNISNSSKVHNSVKCILRKYFLHSFGIA*VSINKLK 1193
+ C VV+VP W+ L+NISNSSK+H+ +KCI+ KYF++S + VSIN+L+
Sbjct: 458 I*CNVVIVP*WIKGTLSNISNSSKMHDCIKCIVFKYFIYSLFVTQVSINELQ 303
Score = 39.6 bits (80), Expect(2) = 5e-064
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -1 / +3
Query: 848 KQSNMAVMILRYFNVIGSDPE 786
+ S++ V ILRYFNVIGSDPE
Sbjct: 639 RSSDLGVTILRYFNVIGSDPE 701
Score = 32.2 bits (64), Expect(2) = 9e-040
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1 / -3
Query: 787 SGSDPITLKYLKIMT 831
SGS+PITLKYLK++T
Sbjct: 700 SGSEPITLKYLKMVT 656
>gb|DR057937.1|DR057937 RTNIT1_8_E08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_E08_A029 5', mRNA sequence
Length = 840
Score = 197 bits (424), Expect(2) = 5e-050
Identities = 82/103 (79%), Positives = 88/103 (85%)
Frame = -1 / +2
Query: 1199 GRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLE 1020
G+ DLGD+KAV KIF+ENAFDAVMHFAAVAYVGEST++PLRYYHNITSNTLTVLE
Sbjct: 530 GKAAVYLCDLGDSKAVNKIFAENAFDAVMHFAAVAYVGESTIDPLRYYHNITSNTLTVLE 709
Query: 1019 AMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAK 891
AMAA+ V LIYSSTCATYGEP MPI E TPQ PINPYGKAK
Sbjct: 710 AMAAHGVKKLIYSSTCATYGEPAKMPITEETPQVPINPYGKAK 838
Score = 158 bits (340), Expect = 6e-038
Identities = 76/96 (79%), Positives = 79/96 (82%)
Frame = +1 / -1
Query: 889 FFALPYGLIGF*GVVSTIGIVSGSP*VAHVLE*IRVFTLYAAIASRTVNVFDVMLW*YLS 1068
FFA PYG IG *GV S IGI++GSP*VAHVLE I FT AA+AS TVNV DVML *YL
Sbjct: 840 FFAFPYGFIGT*GVSSVIGILAGSP*VAHVLEYISFFTPCAAMASNTVNVLDVML**YLR 661
Query: 1069 GSIVLSPT*ATAAKCITASNAFSENIFFTALASPKS 1176
GSIVLSPT*ATAAKCITASNAFS NI FTAL SPKS
Sbjct: 660 GSIVLSPT*ATAAKCITASNAFSANILFTALLSPKS 553
Score = 105 bits (225), Expect = 5e-022
Identities = 45/96 (46%), Positives = 62/96 (64%)
Frame = +3 / -3
Query: 891 LCLTIWIDRILRSCFYNRHRIRFTIGCTRTRVNQSIYIICCHCLKNCQCVRCYVVVVPEW 1070
LC +IWI R LRS NRH RF I CT + Q ++ + H CQC+ C V++VP+
Sbjct: 838 LCFSIWIYRNLRSFLCNRHFSRFPISCTCA*IYQFLHPMRSHGF*YCQCIGCNVMIVPKR 659
Query: 1071 LHCALTNISNSSKVHNSVKCILRKYFLHSFGIA*VS 1178
++CAL +IS+SS+VH VKCI KYF++ F I V+
Sbjct: 658 IYCALAHISHSSEVHYCVKCIFCKYFIYRFAITQVT 551
Score = 22.1 bits (42), Expect(2) = 5e-050
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1 / +3
Query: 1205 EPGRLQFI 1182
EPGRLQFI
Sbjct: 525 EPGRLQFI 548
>gb|DR099748.1|DR099748 STRR1_58_E10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_58_E10_A033 3', mRNA sequence
Length = 748
Score = 186 bits (401), Expect = 2e-046
Identities = 74/99 (74%), Positives = 84/99 (84%)
Frame = -1 / +2
Query: 614 DAHVKALGKAQPGKVGIYNVGTGQGRSVTEFVEACKKATGASIKVEYLARRPGDYAEVYS 435
DAHVKAL +PG+V IYNVGTG+GRSV EFVEACK ATG +I VEYL RRPGDYAEVYS
Sbjct: 2 DAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYS 181
Query: 434 DPSKILMDLNWTAQYTDLGQSLAQAWKWQKAHPNGYASA 318
DPSKI +LNW+A+YT+L +SL AWKWQKAHPNGY S+
Sbjct: 182 DPSKINQELNWSAKYTNLKESLTVAWKWQKAHPNGYGSS 298
Score = 144 bits (310), Expect = 9e-034
Identities = 67/98 (68%), Positives = 72/98 (73%)
Frame = +1 / -2
Query: 322 DAYPFGCAFCHFHAWARLWPRSVYWAVQLRSMRIFDGSLYTSA*SPGLRARYSTLIEAPV 501
D YP GCAFCHF A RL R VY+A Q S I +GSLYTSA*SPGLR RYST+I PV
Sbjct: 294 DPYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPV 115
Query: 502 AFLQASTNSVTDLPWPVPTL*IPTLPG*ALPRAFT*AS 615
A LQASTNS+TDLP+PVPTL I T PG L AFT AS
Sbjct: 114 AALQASTNSLTDLPFPVPTLYILTSPGRTLTNAFTCAS 1
>gb|DR388190.1|DR388190 RTHG1_26_E04.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_26_E04_A029 5', mRNA sequence
Length = 540
Score = 179 bits (385), Expect = 4e-044
Identities = 72/99 (72%), Positives = 80/99 (80%)
Frame = -1 / -1
Query: 614 DAHVKALGKAQPGKVGIYNVGTGQGRSVTEFVEACKKATGASIKVEYLARRPGDYAEVYS 435
DAHVKAL PG+V IYNVGTG+GRSV EFVEACK ATG + VEYL RRPGDYAEVYS
Sbjct: 540 DAHVKALVNVCPGEVRIYNVGTGKGRSVKEFVEACKAATGVNFSVEYLGRRPGDYAEVYS 361
Query: 434 DPSKILMDLNWTAQYTDLGQSLAQAWKWQKAHPNGYASA 318
DPSKI +L W A+YT+L +SL AWKWQKAHPNGY S+
Sbjct: 360 DPSKINQELKWFAKYTNLKESLTVAWKWQKAHPNGYGSS 244
Score = 135 bits (290), Expect = 5e-031
Identities = 63/95 (66%), Positives = 67/95 (70%)
Frame = +1 / +2
Query: 322 DAYPFGCAFCHFHAWARLWPRSVYWAVQLRSMRIFDGSLYTSA*SPGLRARYSTLIEAPV 501
D YP GCAFCHF A RL R VY+A S I +GSLYTSA*SPGLR RYST PV
Sbjct: 248 DPYPLGCAFCHFQATVRLSLRFVYFANHFNSWLILEGSLYTSA*SPGLRPRYSTEKLTPV 427
Query: 502 AFLQASTNSVTDLPWPVPTL*IPTLPG*ALPRAFT 606
A LQASTNS+TDLP+PVPTL I T PG L AFT
Sbjct: 428 AALQASTNSLTDLPFPVPTLYILTSPGQTLTNAFT 532
>gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIH331 5' end, mRNA sequence
Length = 925
Score = 108 bits (231), Expect(4) = 1e-042
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +2
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 248 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 427
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 428 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 589
Score = 58.8 bits (122), Expect(4) = 1e-042
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 713 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 838
Score = 38.2 bits (77), Expect(4) = 1e-042
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +2
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 584 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 673
Score = 24.9 bits (48), Expect(4) = 1e-042
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1 / +3
Query: 563 YNVGTGQGRSVTEFVEA 513
YN+ TG+G SV E V A
Sbjct: 873 YNLRTGRGTSVLEMVAA 923
>gb|DR071198.1|DR071198 RTDK1_18_F12.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_F12_A029 3', mRNA sequence
Length = 817
Score = 172 bits (370), Expect = 5e-042
Identities = 72/83 (86%), Positives = 77/83 (92%)
Frame = -1 / -3
Query: 1205 EPGRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTV 1026
EPGRLQFI ADLGD+KAV KIF+ENAFDAVMHFAAVAYVGEST++PL YYHNITSNTLTV
Sbjct: 251 EPGRLQFICADLGDSKAVNKIFAENAFDAVMHFAAVAYVGESTIDPLXYYHNITSNTLTV 72
Query: 1025 LEAMAAYNVNTLIYSSTCATYGE 957
LEAMAA+ V LIYSSTCATYGE
Sbjct: 71 LEAMAAHRVKKLIYSSTCATYGE 3
Score = 137 bits (294), Expect = 1e-031
Identities = 68/84 (80%), Positives = 69/84 (82%)
Frame = +1 / +1
Query: 955 GSP*VAHVLE*IRVFTLYAAIASRTVNVFDVMLW*YLSGSIVLSPT*ATAAKCITASNAF 1134
GSP*VAHVLE I FT AA+AS TVNV DVML *Y GSIVLSPT*ATAAKCITASNAF
Sbjct: 1 GSP*VAHVLEYISFFTRCAAMASNTVNVLDVML**YXRGSIVLSPT*ATAAKCITASNAF 180
Query: 1135 SENIFFTALASPKSA*IN*SLPGS 1206
S NI FTAL SPKSA IN SLPGS
Sbjct: 181 SANILFTALLSPKSAQINCSLPGS 252
>gb|DR071265.1|DR071265 RTDK1_18_F12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_F12_A029 5', mRNA sequence
Length = 527
Score = 168 bits (361), Expect = 8e-041
Identities = 66/87 (75%), Positives = 75/87 (86%)
Frame = -1 / -1
Query: 578 GKVGIYNVGTGQGRSVTEFVEACKKATGASIKVEYLARRPGDYAEVYSDPSKILMDLNWT 399
G+V IYNVGTG+GRSV EFVEACK ATG +I VEYL RRPGDYAEVYSDPSKI +LNW+
Sbjct: 527 GEVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELNWS 348
Query: 398 AQYTDLGQSLAQAWKWQKAHPNGYASA 318
A+YT+L +SL AWKWQKAHPNGY S+
Sbjct: 347 AKYTNLKESLTVAWKWQKAHPNGYGSS 267
Score = 131 bits (281), Expect = 9e-030
Identities = 59/84 (70%), Positives = 64/84 (76%)
Frame = +1 / +1
Query: 322 DAYPFGCAFCHFHAWARLWPRSVYWAVQLRSMRIFDGSLYTSA*SPGLRARYSTLIEAPV 501
D YP GCAFCHF A RL R VY+A Q S I +GSLYTSA*SPGLR RYST+I PV
Sbjct: 271 DPYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPV 450
Query: 502 AFLQASTNSVTDLPWPVPTL*IPT 573
A LQASTNS+TDLP+PVPTL I T
Sbjct: 451 AALQASTNSLTDLPFPVPTLYILT 522
>gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR51 5' end, mRNA sequence
Length = 942
Score = 108 bits (231), Expect(3) = 1e-040
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +2
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 248 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 427
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 428 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 589
Score = 58.8 bits (122), Expect(3) = 1e-040
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 713 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 838
Score = 38.2 bits (77), Expect(3) = 1e-040
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +2
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 584 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 673
>gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIAE04 5' end, mRNA sequence
Length = 906
Score = 108 bits (231), Expect(3) = 1e-040
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +2
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 248 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 427
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 428 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 589
Score = 58.8 bits (122), Expect(3) = 1e-040
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 713 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 838
Score = 38.2 bits (77), Expect(3) = 1e-040
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +2
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 584 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 673
>gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIHV83 5' end, mRNA sequence
Length = 880
Score = 108 bits (231), Expect(3) = 1e-040
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +2
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 248 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 427
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 428 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIHKA 589
Score = 58.8 bits (122), Expect(3) = 1e-040
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 713 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 838
Score = 38.2 bits (77), Expect(3) = 1e-040
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +2
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 584 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 673
>gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone PICME12 5' end, mRNA sequence
Length = 852
Score = 108 bits (231), Expect(3) = 1e-040
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +3
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 246 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 425
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 426 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 587
Score = 58.8 bits (122), Expect(3) = 1e-040
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +3
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 711 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 836
Score = 38.2 bits (77), Expect(3) = 1e-040
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +3
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 582 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 671
>gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 5', mRNA sequence
Length = 801
Score = 108 bits (231), Expect(3) = 1e-040
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +3
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 204 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 383
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 384 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 545
Score = 58.8 bits (122), Expect(3) = 1e-040
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +3
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 669 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 794
Score = 38.2 bits (77), Expect(3) = 1e-040
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +3
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 540 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 629
>gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 5', mRNA sequence
Length = 800
Score = 108 bits (231), Expect(3) = 1e-040
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +1
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 202 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 381
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 382 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 543
Score = 58.8 bits (122), Expect(3) = 1e-040
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +1
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 667 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 792
Score = 38.2 bits (77), Expect(3) = 1e-040
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +1
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 538 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 627
>gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 5', mRNA sequence
Length = 781
Score = 108 bits (231), Expect(3) = 1e-040
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +3
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 177 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 356
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 357 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 518
Score = 58.8 bits (122), Expect(3) = 1e-040
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +3
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 642 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 767
Score = 38.2 bits (77), Expect(3) = 1e-040
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +3
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 513 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 602
>gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_E08_A029 5', mRNA sequence
Length = 810
Score = 108 bits (231), Expect(3) = 4e-040
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +2
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 209 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 388
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 389 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 550
Score = 57.4 bits (119), Expect(3) = 4e-040
Identities = 24/40 (60%), Positives = 26/40 (65%)
Frame = -1 / +2
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKAL 594
A+G P L V G DY T DGT VRDYI V DL D H+ AL
Sbjct: 674 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISAL 793
Score = 38.2 bits (77), Expect(3) = 4e-040
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +2
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 545 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 634
>gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD946 3' end, mRNA sequence
Length = 847
Score = 106 bits (227), Expect(3) = 5e-040
Identities = 47/114 (41%), Positives = 65/114 (57%)
Frame = -1 / +2
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 239 LHFFLGDLCNKEDVEKAFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 418
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 419 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 580
Score = 58.8 bits (122), Expect(3) = 5e-040
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 704 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 829
Score = 38.2 bits (77), Expect(3) = 5e-040
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +2
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 575 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 664
>gb|CO166148.1|CO166148 FLD1_59_E03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E03_A029 5', mRNA sequence
Length = 885
Score = 164 bits (353), Expect = 1e-039
Identities = 69/79 (87%), Positives = 74/79 (93%)
Frame = -1 / +2
Query: 1205 EPGRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTV 1026
EPGRLQFI ADLGD+KAV KIF+ENAFDAVMHFAAVAYVGEST++PLRYYHNITSNTLTV
Sbjct: 647 EPGRLQFICADLGDSKAVNKIFAENAFDAVMHFAAVAYVGESTIDPLRYYHNITSNTLTV 826
Query: 1025 LEAMAAYNVNTLIYSSTCA 969
LEAMAA+ V LIYSSTCA
Sbjct: 827 LEAMAAHRVKKLIYSSTCA 883
Score = 131 bits (281), Expect = 9e-030
Identities = 65/80 (81%), Positives = 66/80 (82%)
Frame = +1 / -1
Query: 967 VAHVLE*IRVFTLYAAIASRTVNVFDVMLW*YLSGSIVLSPT*ATAAKCITASNAFSENI 1146
VAHVLE I FT AA+AS TVNV DVML *YL GSIVLSPT*ATAAKCITASNAFS NI
Sbjct: 885 VAHVLEYISFFTRCAAMASNTVNVLDVML**YLRGSIVLSPT*ATAAKCITASNAFSANI 706
Query: 1147 FFTALASPKSA*IN*SLPGS 1206
FTAL SPKSA IN SLPGS
Sbjct: 705 LFTALLSPKSAQINCSLPGS 646
>gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFU78 3' end, mRNA sequence
Length = 808
Score = 107 bits (228), Expect(3) = 1e-037
Identities = 47/112 (41%), Positives = 64/112 (57%)
Frame = -1 / +2
Query: 1199 GRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLE 1020
G L F DL D +A++K+F FDAV+HFA + VGES +PL YY N TL +LE
Sbjct: 197 GNLTFHKIDLLDKEAMEKLFLSTEFDAVIHFAGLKAVGESVAKPLLYYKNNIVGTLNLLE 376
Query: 1019 AMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILD 864
M + L++SS+ YG+P +P E P +NPYG+ K E+I D
Sbjct: 377 MMISQGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPYGRTKLFIEEICRD 532
Score = 51.9 bits (107), Expect(3) = 1e-037
Identities = 23/37 (62%), Positives = 23/37 (62%)
Frame = -1 / +2
Query: 698 PGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
P L V G DY T DGT VRDYI V DL D H AL K
Sbjct: 683 PELTVFGNDYQTKDGTGVRDYIHVMDLSDGHTAALDK 793
Score = 36.8 bits (74), Expect(3) = 1e-037
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -1 / +2
Query: 830 VMILRYFNVIGSDPEGRLGEAPR 762
+++LRYFN +G+ P G +GE PR
Sbjct: 560 IILLRYFNPVGAHPSGFIGEDPR 628
>gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC779 3' end, mRNA sequence
Length = 943
Score = 108 bits (231), Expect(3) = 1e-034
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +1
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 262 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 441
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 442 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 603
Score = 38.6 bits (78), Expect(3) = 1e-034
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -1 / +3
Query: 656 GTCVRDYIDVTDLVDAHVKALGK 588
GT VRDYI V DL D H+ AL K
Sbjct: 786 GTAVRDYIHVVDLADGHISALQK 854
Score = 38.2 bits (77), Expect(3) = 1e-034
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +1
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 598 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 687
>gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 5', mRNA sequence
Length = 691
Score = 70.3 bits (147), Expect(3) = 3e-029
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = -1 / +2
Query: 1070 PLRYYHNITSNTLTVLEAMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAK 891
PLRYY N TL + E MA + +++SS+ YG+P +P VE + +NPYG+ K
Sbjct: 38 PLRYYKNNLVGTLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTK 217
Query: 890 KMAEDIILDFTKS 852
E+I D K+
Sbjct: 218 LFLEEIARDIYKA 256
Score = 58.8 bits (122), Expect(3) = 3e-029
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 380 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 505
Score = 38.2 bits (77), Expect(3) = 3e-029
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +2
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 251 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 340
>gb|DT626458.1|DT626458 EST1158382 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAB05 5' end, mRNA sequence
Length = 723
Score = 108 bits (231), Expect(2) = 2e-028
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +2
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 248 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 427
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 428 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 589
Score = 38.2 bits (77), Expect(2) = 2e-028
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +2
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 584 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 673
>gb|CX648556.1|CX648556 COLD1_29_A03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_A03_A029 5', mRNA sequence
Length = 695
Score = 108 bits (231), Expect(2) = 2e-028
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +3
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 240 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 419
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 420 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 581
Score = 38.2 bits (77), Expect(2) = 2e-028
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +3
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 576 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 665
>gb|CO196982.1|CO196982 GEO1_3_C05.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_C05_A029 3', mRNA sequence
Length = 677
Score = 90.0 bits (190), Expect(2) = 2e-028
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = -1 / +2
Query: 473 LARRPGDYAEVYSDPSKILMDLNWTAQYTDLGQSLAQAWKWQKAHPNG 330
L RRPGDYAEVYSDPSKI +LNW AQYT+L +SLA AW W++ HP G
Sbjct: 119 LERRPGDYAEVYSDPSKIQRELNWFAQYTNLTESLAVAWSWRRTHPVG 262
Score = 56.5 bits (117), Expect(2) = 2e-028
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = -1 / +1
Query: 590 KAQPGKVGIYNVGTGQGRSVTEFVEACKKATGASIKV 480
K G V +YNVGTG+G +V EFVE+CK+ATG +I V
Sbjct: 1 KLNQGHVDVYNVGTGKGSTVKEFVESCKQATGVNITV 111
>gb|AI812993.1|AI812993 2E11 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 643
Score = 106 bits (227), Expect(2) = 6e-028
Identities = 46/112 (41%), Positives = 65/112 (58%)
Frame = -1 / +2
Query: 1187 FIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAMAA 1008
F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E MA
Sbjct: 185 FFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIMAK 364
Query: 1007 YNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
+ +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 365 HGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 520
Score = 38.2 bits (77), Expect(2) = 6e-028
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +2
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 515 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 604
>gb|DR056997.1|DR056997 RTNIT1_1_H08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_1_H08_A029 5', mRNA sequence
Length = 660
Score = 107 bits (228), Expect(2) = 1e-027
Identities = 47/112 (41%), Positives = 64/112 (57%)
Frame = -1 / +1
Query: 1199 GRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLE 1020
G L F DL D +A++K+F FDAV+HFA + VGES +PL YY N TL +LE
Sbjct: 178 GNLTFHKIDLLDKEAMEKLFLSTEFDAVIHFAGLKAVGESVAKPLLYYKNNIVGTLNLLE 357
Query: 1019 AMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILD 864
M + L++SS+ YG+P +P E P +NPYG+ K E+I D
Sbjct: 358 MMISQGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPYGRTKLFIEEICRD 513
Score = 36.8 bits (74), Expect(2) = 1e-027
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -1 / +1
Query: 830 VMILRYFNVIGSDPEGRLGEAPR 762
+++LRYFN +G+ P G +GE PR
Sbjct: 541 IILLRYFNPVGAHPSGFIGEDPR 609
>gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE31 3' end, mRNA sequence
Length = 547
Score = 66.6 bits (139), Expect(3) = 1e-025
Identities = 28/73 (38%), Positives = 39/73 (53%)
Frame = -1 / +2
Query: 1082 STMEPLRYYHNITSNTLTVLEAMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPY 903
S +PL YY N TL +LE M + L++SS+ YG+P +P E P +NPY
Sbjct: 2 SVAKPLLYYKNNIVGTLNLLEMMISQGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPY 181
Query: 902 GKAKKMAEDIILD 864
G+ K E+I D
Sbjct: 182 GRTKLFIEEICRD 220
Score = 51.9 bits (107), Expect(3) = 1e-025
Identities = 23/37 (62%), Positives = 23/37 (62%)
Frame = -1 / +2
Query: 698 PGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
P L V G DY T DGT VRDYI V DL D H AL K
Sbjct: 371 PELTVFGNDYQTKDGTGVRDYIHVMDLSDGHTAALDK 481
Score = 36.8 bits (74), Expect(3) = 1e-025
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -1 / +2
Query: 830 VMILRYFNVIGSDPEGRLGEAPR 762
+++LRYFN +G+ P G +GE PR
Sbjct: 248 IILLRYFNPVGAHPSGFIGEDPR 316
>gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clone RS16E09, mRNA sequence
Length = 661
Score = 72.1 bits (151), Expect(3) = 5e-025
Identities = 33/82 (40%), Positives = 49/82 (59%)
Frame = -1 / +3
Query: 635 IDVTDLVDAHVKALGKAQPGKVGIYNVGTGQGRSVTEFVEACKKATGASIKVEYLARRPG 456
+D+ D + ++ L KA YN+GTG+G SV E V A +KA+G SI +++ RRPG
Sbjct: 372 VDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPG 551
Query: 455 DYAEVYSDPSKILMDLNWTAQY 390
D VY+ K +L+W A+Y
Sbjct: 552 DATAVYASTEKAERELDWKAKY 617
Score = 47.3 bits (97), Expect(3) = 5e-025
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -1 / +3
Query: 992 LIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
+++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 21 MVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 161
Score = 38.2 bits (77), Expect(3) = 5e-025
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +3
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 156 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 245
>gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C04_A033 5', mRNA sequence
Length = 847
Score = 71.6 bits (150), Expect(3) = 1e-024
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = -1 / +3
Query: 635 IDVTDLVDAHVKALGKAQPGKVGIYNVGTGQGRSVTEFVEACKKATGASIKVEYLARRPG 456
+D+ D + ++ L KA YN+GTG+G SV E V A +KA+G SI +++ RRPG
Sbjct: 381 VDLADGHISALQKLFKASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPG 560
Query: 455 DYAEVYSDPSKILMDLNWTAQY 390
D VY+ K +L W A+Y
Sbjct: 561 DATAVYASTEKAERELGWKAKY 626
Score = 47.3 bits (97), Expect(3) = 1e-024
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -1 / +3
Query: 992 LIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
+++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 30 MVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 170
Score = 38.2 bits (77), Expect(3) = 1e-024
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1 / +3
Query: 851 KKQSNMAVMILRYFNVIGSDPEGRLGEAPR 762
K + +++LRYFN +G+ P G++GE P+
Sbjct: 165 KADPDWRIILLRYFNPVGAHPSGQIGEDPK 254
>gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 3', mRNA sequence
Length = 673
Score = 69.3 bits (145), Expect(2) = 7e-023
Identities = 28/58 (48%), Positives = 38/58 (65%)
Frame = -1 / +2
Query: 563 YNVGTGQGRSVTEFVEACKKATGASIKVEYLARRPGDYAEVYSDPSKILMDLNWTAQY 390
YN+GTG+G SV E V A +KA+G SI +++ RRPGD VY+ K +L W A+Y
Sbjct: 161 YNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWKAKY 334
Score = 58.8 bits (122), Expect(2) = 7e-023
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -1 / +1
Query: 713 ALGIIPGLKVRGTDYSTADGTCVRDYIDVTDLVDAHVKALGK 588
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 1 AVGRQPVLNVYGNDYQTKDGTAVRDYIHVVDLADGHISALQK 126
>gb|DN613948.1|DN613948 EST966998 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABY29, mRNA sequence
Length = 772
Score = 108 bits (230), Expect = 9e-023
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = -1 / +1
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 406 LHFFLGDLCNKEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 585
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ K E+I D K+
Sbjct: 586 AKHGCKKVVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDIYKA 747
>gb|CV034239.1|CV034239 RTNACL1_39_C12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_39_C12_A029 5', mRNA sequence
Length = 759
Score = 107 bits (228), Expect = 2e-022
Identities = 47/112 (41%), Positives = 64/112 (57%)
Frame = -1 / +3
Query: 1199 GRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLE 1020
G L F DL D +A++K+F FDAV+HFA + VGES +PL YY N TL +LE
Sbjct: 360 GNLTFHKIDLLDKEAMEKLFLSTEFDAVIHFAGLKAVGESVAKPLLYYKNNIVGTLNLLE 539
Query: 1019 AMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILD 864
M + L++SS+ YG+P +P E P +NPYG+ K E+I D
Sbjct: 540 MMISQGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPYGRTKLFIEEICRD 695
>gb|DR054191.1|DR054191 RTCA1_15_F12.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_15_F12_A029 5', mRNA sequence
Length = 653
Score = 107 bits (228), Expect = 2e-022
Identities = 47/112 (41%), Positives = 64/112 (57%)
Frame = -1 / +1
Query: 1199 GRLQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLE 1020
G L F DL D +A++K+F FDAV+HFA + VGES +PL YY N TL +LE
Sbjct: 280 GNLTFHKIDLLDKEAMEKLFLSTEFDAVIHFAGLKAVGESVAKPLLYYKNNIVGTLNLLE 459
Query: 1019 AMAAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILD 864
M + L++SS+ YG+P +P E P +NPYG+ K E+I D
Sbjct: 460 MMISQGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPYGRTKLFIEEICRD 615
>gb|DR178301.1|DR178301 RTMNUT1_10_G12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_G12_A029 5', mRNA sequence
Length = 461
Score = 106 bits (227), Expect = 2e-022
Identities = 46/114 (40%), Positives = 66/114 (57%)
Frame = -1 / +2
Query: 1193 LQFIYADLGDAKAVKKIFSENAFDAVMHFAAVAYVGESTMEPLRYYHNITSNTLTVLEAM 1014
L F DL + + V+K+FS FDAV+HFA + VGES PLRYY N TL + E M
Sbjct: 71 LHFFLGDLCNQEDVEKVFSLAKFDAVIHFAGLKAVGESVAIPLRYYKNNLVGTLNLYEIM 250
Query: 1013 AAYNVNTLIYSSTCATYGEPDTMPIVETTPQNPINPYGKAKKMAEDIILDFTKS 852
A + +++SS+ YG+P +P VE + +NPYG+ + E+I D K+
Sbjct: 251 AKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTQLFLEEIARDIYKA 412
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 620,085,805
Number of Sequences: 355925
Number of extensions: 8872573
Number of successful extensions: 53831
Number of sequences better than 1.0e-020: 46
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 18800163720
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)