TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067516.2.1
(605 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR682416.1|DR682416 EST1072491 Normalized pine embryo li... 116 2e-025
gb|DR022947.1|DR022947 STRS1_54_C01.g1_A034 Shoot tip pitch... 103 1e-021
gb|CF668912.1|CF668912 RTCNT1_39_A05.g1_A029 Root control P... 101 4e-021
>gb|DR682416.1|DR682416 EST1072491 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA972, mRNA sequence
Length = 794
Score = 116 bits (247), Expect = 2e-025
Identities = 46/82 (56%), Positives = 65/82 (79%)
Frame = -2 / -1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIE+RL IHP+ V++MR+EVI LIP ++YADPRSKL KDAFD++++++I+KVTKL
Sbjct: 542 NISIEQRLLQIHPEQVRRMRDEVIKLIPAIVYADPRSKLNNFKDAFDIAVQSMIDKVTKL 363
Query: 421 RRDIIAGQEDKDFIEENSWKYS 356
R DII G+E +D+ E+ + S
Sbjct: 362 RSDIIEGREIEDYQEDEGSEQS 297
>gb|DR022947.1|DR022947 STRS1_54_C01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_54_C01_A034 5', mRNA sequence
Length = 806
Score = 103 bits (220), Expect = 1e-021
Identities = 40/72 (55%), Positives = 58/72 (80%)
Frame = -2 / +1
Query: 571 IHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKLRRDIIAGQED 392
IHP+ V++MR+EVI LIP ++YADPRSKL KDAFD++++++I+KVTKLR DII G+E
Sbjct: 1 IHPEQVRRMRDEVIKLIPAIVYADPRSKLNNFKDAFDITVQSMIDKVTKLRSDIIEGREI 180
Query: 391 KDFIEENSWKYS 356
+D+ E+ + S
Sbjct: 181 EDYQEDEGSEQS 216
>gb|CF668912.1|CF668912 RTCNT1_39_A05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_A05_A029 5', mRNA sequence
Length = 846
Score = 101 bits (216), Expect = 4e-021
Identities = 39/63 (61%), Positives = 53/63 (84%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIE+RL IHP+ V++MR+EVI LIP ++YADPRSKL KDAFD++++++I+KVTKL
Sbjct: 658 NISIEQRLLQIHPEQVRRMRDEVIKLIPAIVYADPRSKLNNFKDAFDITVQSMIDKVTKL 837
Query: 421 RRD 413
R D
Sbjct: 838 RSD 846
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 308,112,161
Number of Sequences: 355925
Number of extensions: 3864172
Number of successful extensions: 38891
Number of sequences better than 1.0e-020: 3
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8141035500
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)