TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067450.2.1
(724 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism... 109 5e-034
gb|CF398420.1|CF398420 RTDS3_12_G12.g1_A022 Drought-stresse... 103 2e-032
gb|U39301.1|PTU39301 Pinus taeda xylem caffeic acid O-methy... 105 4e-032
gb|U70873.1|PRU70873 Pinus radiata O-methyltransferase (omt... 103 9e-032
gb|CF390447.1|CF390447 RTDR2_19_C10.g1_A021 Loblolly pine r... 103 1e-031
gb|DR385848.1|DR385848 RTHG1_11_F05.b1_A029 Roots plus adde... 103 1e-031
gb|CF478857.1|CF478857 RTWW3_15_E06.g1_A022 Well-watered lo... 103 1e-031
gb|CF387289.1|CF387289 RTDR1_12_B04.b1_A015 Loblolly pine r... 103 1e-031
gb|CF665309.1|CF665309 RTCNT1_15_E12.b1_A029 Root control P... 103 1e-031
gb|CF664309.1|CF664309 RTCNT1_9_A12.b1_A029 Root control Pi... 98 8e-031
gb|CF385489.1|CF385489 RTDR1_4_C03.b1_A015 Loblolly pine ro... 100 2e-030
gb|CF665472.1|CF665472 RTCNT1_16_E12.b1_A029 Root control P... 103 8e-030
gb|CX652953.1|CX652953 COLD1_62_B07.g1_A029 Root cold Pinus... 103 1e-029
gb|CF385119.1|CF385119 RTDR1_2_H01.b1_A015 Loblolly pine ro... 87 1e-026
gb|DR161217.1|DR161217 RTFE1_10_C01.g1_A029 Roots minus iro... 86 2e-026
gb|CF398398.1|CF398398 RTDS3_12_G12.b1_A022 Drought-stresse... 82 6e-026
gb|AW290074.1|AW290074 NXNV010C10F Nsf Xylem Normal wood Ve... 82 4e-025
gb|CD026734.1|CD026734 NXNV010C10 Nsf Xylem Normal wood Ver... 82 4e-025
gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clon... 114 6e-025
gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clon... 114 6e-025
gb|AW698291.1|AW698291 NXNV_071_D10_F Nsf Xylem Normal wood... 82 3e-023
gb|AF119225.1|AF119225 Pinus radiata caffeic acid ortho-met... 56 1e-022
gb|CF387392.1|CF387392 RTDR1_12_B04.g1_A015 Loblolly pine r... 103 2e-022
gb|CF400142.1|CF400142 RTWW1_3_A06.g1_A015 Well-watered lob... 103 2e-022
gb|AI812857.1|AI812857 20G9 Pine Lambda Zap Xylem library P... 103 2e-022
gb|CF385259.1|CF385259 RTDR1_2_H01.g1_A015 Loblolly pine ro... 103 9e-022
gb|CF477891.1|CF477891 RTWW3_13_E06.g1_A022 Well-watered lo... 103 1e-021
gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus pota... 102 3e-021
>gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_B10_A029 5', mRNA sequence
Length = 777
Score = 109 bits (233), Expect(3) = 5e-034
Identities = 42/91 (46%), Positives = 56/91 (61%)
Frame = -2 / -1
Query: 684 FQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIP 505
F + S+VDV +I+ DL HVV+TAP G+ V GDMFE++P
Sbjct: 678 FHSLNSIVDVGGGTGTAVAEIVRAYPSIKGINYDLPHVVSTAPHLTGVDHVGGDMFESVP 499
Query: 504 PANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
+A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 498 MGDAIFMKWIMHDWDDEDCIKILKNCRKAIP 406
Score = 51.0 bits (105), Expect(3) = 5e-034
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = -2 / -1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ +++E+GF DY II + ++S+IE +P
Sbjct: 267 GKERTEEEWKKLLWESGFGDYNIIDIPALQSVIEAFP 157
Score = 22.1 bits (42), Expect(3) = 5e-034
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 399 GKVIIVDVVLDADEGDNTDKKRKKAVD 319
>gb|CF398420.1|CF398420 RTDS3_12_G12.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_G12_A022 5', mRNA sequence
Length = 609
Score = 103 bits (220), Expect(3) = 2e-032
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 135 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 308
Score = 48.7 bits (100), Expect(3) = 2e-032
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +3
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 447 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 557
Score = 24.9 bits (48), Expect(3) = 2e-032
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2 / +3
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+T+ D
Sbjct: 315 GKVIIVDVVLDADQGDNTDKKTKKAVD 395
>gb|U39301.1|PTU39301 Pinus taeda xylem caffeic acid O-methyltransferase (COMT-1) mRNA,
partial cds
Length = 1279
Score = 105 bits (224), Expect(3) = 4e-032
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P A+A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 748 DLPHVVATASSLSGVQHVGGDMFETVPTADAIFMKWIMHDWNDEDCIKILKNCRKAIP 921
Score = 48.7 bits (100), Expect(3) = 4e-032
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 1060 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 1170
Score = 22.1 bits (42), Expect(3) = 4e-032
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 928 GKVIIVDVVLDADQGDNTDKKRKKAVD 1008
>gb|U70873.1|PRU70873 Pinus radiata O-methyltransferase (omt) mRNA, complete cds
Length = 1421
Score = 103 bits (220), Expect(3) = 9e-032
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +2
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 755 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 928
Score = 49.2 bits (101), Expect(3) = 9e-032
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +2
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 1067 GKERSEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 1177
Score = 22.1 bits (42), Expect(3) = 9e-032
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +2
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 935 GKVIIVDVVLDADQGDNTDKKRKKAVD 1015
>gb|CF390447.1|CF390447 RTDR2_19_C10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_C10_A021 5', mRNA
sequence
Length = 847
Score = 103 bits (220), Expect(3) = 1e-031
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 334 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 507
Score = 48.7 bits (100), Expect(3) = 1e-031
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 646 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 756
Score = 22.1 bits (42), Expect(3) = 1e-031
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 514 GKVIIVDVVLDADQGDNTDKKRKKAVD 594
>gb|DR385848.1|DR385848 RTHG1_11_F05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_F05_A029 3', mRNA sequence
Length = 757
Score = 103 bits (220), Expect(3) = 1e-031
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 261 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 434
Score = 48.7 bits (100), Expect(3) = 1e-031
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +3
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 573 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 683
Score = 22.1 bits (42), Expect(3) = 1e-031
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +3
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 441 GKVIIVDVVLDADQGDNTDKKRKKAVD 521
>gb|CF478857.1|CF478857 RTWW3_15_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_15_E06_A022 5', mRNA sequence
Length = 662
Score = 103 bits (220), Expect(3) = 1e-031
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / -3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 498 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 325
Score = 48.7 bits (100), Expect(3) = 1e-031
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / -3
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 186 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 76
Score = 22.1 bits (42), Expect(3) = 1e-031
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / -3
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 318 GKVIIVDVVLDADQGDNTDKKRKKAVD 238
>gb|CF387289.1|CF387289 RTDR1_12_B04.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_B04_A015 3', mRNA
sequence
Length = 641
Score = 103 bits (220), Expect(3) = 1e-031
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 147 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 320
Score = 48.7 bits (100), Expect(3) = 1e-031
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +3
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 459 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 569
Score = 22.1 bits (42), Expect(3) = 1e-031
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +3
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 327 GKVIIVDVVLDADQGDNTDKKRKKAVD 407
>gb|CF665309.1|CF665309 RTCNT1_15_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_E12_A029 3', mRNA sequence
Length = 592
Score = 103 bits (220), Expect(3) = 1e-031
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 112 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 285
Score = 48.7 bits (100), Expect(3) = 1e-031
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 424 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 534
Score = 22.1 bits (42), Expect(3) = 1e-031
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 292 GKVIIVDVVLDADQGDNTDKKRKKAVD 372
>gb|CF664309.1|CF664309 RTCNT1_9_A12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_A12_A029 3', mRNA sequence
Length = 649
Score = 97.7 bits (207), Expect(3) = 8e-031
Identities = 34/58 (58%), Positives = 45/58 (77%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW +C+ IL+NC+KAIP
Sbjct: 112 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNVEDCIKILQNCRKAIP 285
Score = 49.2 bits (101), Expect(3) = 8e-031
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 424 GKERSEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 534
Score = 24.9 bits (48), Expect(3) = 8e-031
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+T+ D
Sbjct: 292 GKVIIVDVVLDADQGDNTDKKTKKAVD 372
>gb|CF385489.1|CF385489 RTDR1_4_C03.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_4_C03_A015 3', mRNA
sequence
Length = 649
Score = 99.6 bits (211), Expect(3) = 2e-030
Identities = 34/55 (61%), Positives = 44/55 (80%)
Frame = -2 / +1
Query: 576 HVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 157 HVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 321
Score = 48.7 bits (100), Expect(3) = 2e-030
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 460 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 570
Score = 22.1 bits (42), Expect(3) = 2e-030
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 328 GKVIIVDVVLDADQGDNTDKKRKKAVD 408
>gb|CF665472.1|CF665472 RTCNT1_16_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_E12_A029 3', mRNA sequence
Length = 597
Score = 103 bits (220), Expect(2) = 8e-030
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 112 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 285
Score = 48.7 bits (100), Expect(2) = 8e-030
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +3
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 429 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 539
>gb|CX652953.1|CX652953 COLD1_62_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_B07_A029 5', mRNA sequence
Length = 828
Score = 103 bits (220), Expect(2) = 1e-029
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / -3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 490 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 317
Score = 48.7 bits (100), Expect(2) = 1e-029
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / -3
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 178 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 68
>gb|CF385119.1|CF385119 RTDR1_2_H01.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_H01_A015 3', mRNA
sequence
Length = 491
Score = 86.8 bits (183), Expect(3) = 1e-026
Identities = 28/46 (60%), Positives = 37/46 (80%)
Frame = -2 / +2
Query: 549 AGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
+G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 2 SGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 139
Score = 48.7 bits (100), Expect(3) = 1e-026
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +2
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 278 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 388
Score = 22.1 bits (42), Expect(3) = 1e-026
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +2
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 146 GKVIIVDVVLDADQGDNTDKKRKKAVD 226
>gb|DR161217.1|DR161217 RTFE1_10_C01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_C01_A029 5', mRNA sequence
Length = 784
Score = 86.3 bits (182), Expect(3) = 2e-026
Identities = 28/45 (62%), Positives = 36/45 (80%)
Frame = -2 / +1
Query: 546 GLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 13 GVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 147
Score = 48.7 bits (100), Expect(3) = 2e-026
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 286 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 396
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 154 GKVIIVDVVLDADQGDNTDKKRKKAVD 234
>gb|CF398398.1|CF398398 RTDS3_12_G12.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_G12_A022 3', mRNA sequence
Length = 443
Score = 81.7 bits (172), Expect(3) = 6e-026
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = -2 / +1
Query: 528 GDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 4 GDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 120
Score = 48.7 bits (100), Expect(3) = 6e-026
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 259 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 369
Score = 24.9 bits (48), Expect(3) = 6e-026
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+T+ D
Sbjct: 127 GKVIIVDVVLDADQGDNTDKKTKKAVD 207
>gb|AW290074.1|AW290074 NXNV010C10F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010C10 5', mRNA sequence
Length = 450
Score = 81.7 bits (172), Expect(3) = 4e-025
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = -2 / +1
Query: 528 GDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 1 GDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 117
Score = 48.7 bits (100), Expect(3) = 4e-025
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 256 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 366
Score = 22.1 bits (42), Expect(3) = 4e-025
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 124 GKVIIVDVVLDADQGDNTDKKRKKAVD 204
>gb|CD026734.1|CD026734 NXNV010C10 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010C10 5' similar to Arabidopsis thaliana sequence
At4g35160 O-methyltransferase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 450
Score = 81.7 bits (172), Expect(3) = 4e-025
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = -2 / +1
Query: 528 GDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 1 GDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 117
Score = 48.7 bits (100), Expect(3) = 4e-025
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 256 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 366
Score = 22.1 bits (42), Expect(3) = 4e-025
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 124 GKVIIVDVVLDADQGDNTDKKRKKAVD 204
>gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clone RS14G09, mRNA sequence
Length = 549
Score = 114 bits (244), Expect = 6e-025
Identities = 44/91 (48%), Positives = 58/91 (63%)
Frame = -2 / +3
Query: 684 FQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIP 505
F G+ SLVD+ +I+ DL HVVATAP G+ + GDMFE +P
Sbjct: 33 FDGLTSLVDIGGGTGTAIAEIVRAYPSIRGINYDLPHVVATAPHLPGVEHMGGDMFETVP 212
Query: 504 PANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
A+A+F+KWIMHDWGD +C+ ILK+C+KAIP
Sbjct: 213 SADAIFMKWIMHDWGDEDCIKILKSCRKAIP 305
>gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clone RS16A04, mRNA sequence
Length = 591
Score = 114 bits (244), Expect = 6e-025
Identities = 44/91 (48%), Positives = 58/91 (63%)
Frame = -2 / +3
Query: 684 FQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIP 505
F G+ SLVD+ +I+ DL HVVATAP G+ + GDMFE +P
Sbjct: 33 FDGLTSLVDIGGGTGTAIAEIVRAYPSIRGINYDLPHVVATAPHLPGVEHMGGDMFETVP 212
Query: 504 PANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
A+A+F+KWIMHDWGD +C+ ILK+C+KAIP
Sbjct: 213 SADAIFMKWIMHDWGDEDCIKILKSCRKAIP 305
>gb|AW698291.1|AW698291 NXNV_071_D10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_071_D10 5' similar to Arabidopsis thaliana
sequence At4g35160 O-methyltransferase - like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 375
Score = 81.7 bits (172), Expect(3) = 3e-023
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = -2 / +1
Query: 528 GDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 1 GDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 117
Score = 42.3 bits (86), Expect(3) = 3e-023
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSII 196
G ER E+EW+ I+ E GFS Y II + ++S+I
Sbjct: 256 GKERTEKEWKRILLEGGFSRYNIIEIPALQSVI 354
Score = 22.1 bits (42), Expect(3) = 3e-023
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 124 GKVIIVDVVLDADQGDNTDKKRKKAVD 204
>gb|AF119225.1|AF119225 Pinus radiata caffeic acid ortho-methyltransferase (cOMT) gene,
complete cds
Length = 1644
Score = 55.6 bits (115), Expect(4) = 1e-022
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = -2 / +1
Query: 483 KWIMHDWGDSECVTILKNCKKAIP 412
+WIMHDW D +C+ ILKNC+KAIP
Sbjct: 1159 QWIMHDWNDEDCIKILKNCRKAIP 1230
Score = 49.2 bits (101), Expect(4) = 1e-022
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
G ER E+EW+ I+ E GFS Y II + ++S+IE +P
Sbjct: 1369 GKERSEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 1479
Score = 34.1 bits (68), Expect(4) = 1e-022
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2 / +3
Query: 546 GLSFVAGDMFEAIPPANAVFLK 481
G+ V GDMFE +P +A+F+K
Sbjct: 1008 GVQHVGGDMFETVPTGDAIFMK 1073
Score = 22.1 bits (42), Expect(4) = 1e-022
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 1237 GKVIIVDVVLDADQGDNTDKKRKKAVD 1317
>gb|CF387392.1|CF387392 RTDR1_12_B04.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_B04_A015 5', mRNA
sequence
Length = 752
Score = 103 bits (220), Expect(2) = 2e-022
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 444 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 617
Score = 22.1 bits (42), Expect(2) = 2e-022
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +3
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 624 GKVIIVDVVLDADQGDNTDKKRKKAVD 704
>gb|CF400142.1|CF400142 RTWW1_3_A06.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_3_A06_A015 5', mRNA sequence
Length = 722
Score = 103 bits (220), Expect(2) = 2e-022
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +2
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 368 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 541
Score = 22.1 bits (42), Expect(2) = 2e-022
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +2
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 548 GKVIIVDVVLDADQGDNTDKKRKKAVD 628
>gb|AI812857.1|AI812857 20G9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 535
Score = 103 bits (220), Expect(2) = 2e-022
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 270 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 443
Score = 22.1 bits (42), Expect(2) = 2e-022
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2 / +3
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSD 316
GKVIIVD V+ A + +K+ + D
Sbjct: 450 GKVIIVDVVLDADQGDNTDKKRKKAVD 530
>gb|CF385259.1|CF385259 RTDR1_2_H01.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_H01_A015 5', mRNA
sequence
Length = 671
Score = 103 bits (220), Expect(2) = 9e-022
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 424 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 597
Score = 21.7 bits (41), Expect(2) = 9e-022
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVGA 361
GKVIIVD V+ A
Sbjct: 604 GKVIIVDVVLDA 639
>gb|CF477891.1|CF477891 RTWW3_13_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_E06_A022 5', mRNA sequence
Length = 721
Score = 103 bits (220), Expect(2) = 1e-021
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = -2 / +3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVVATA + +G+ V GDMFE +P +A+F+KWIMHDW D +C+ ILKNC+KAIP
Sbjct: 495 DLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 668
Score = 21.7 bits (41), Expect(2) = 1e-021
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / +3
Query: 396 GKVIIVDTVVGA 361
GKVIIVD V+ A
Sbjct: 675 GKVIIVDVVLDA 710
>gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_A10_A029 3', mRNA sequence
Length = 824
Score = 102 bits (217), Expect = 3e-021
Identities = 36/57 (63%), Positives = 45/57 (78%)
Frame = -2 / +3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
DL HVVATAP G+ + GDMFE +P A+A+F+KWIMHDWGD +C+ ILK C+KAI
Sbjct: 45 DLPHVVATAPHLLGVEHMGGDMFETVPSADAIFMKWIMHDWGDEDCIKILKRCRKAI 215
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 401,717,406
Number of Sequences: 355925
Number of extensions: 6092665
Number of successful extensions: 49472
Number of sequences better than 1.0e-020: 30
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10136517260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)