TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067375.2.1
(1829 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT634393.1|DT634393 EST1149324 Normalized pine embryo li... 146 9e-056
gb|DR687633.1|DR687633 EST1077715 Normalized pine embryo li... 146 9e-056
gb|DR057730.1|DR057730 RTNIT1_7_B04.g1_A029 Roots minus nit... 152 1e-045
gb|DR057381.1|DR057381 RTNIT1_5_B04.g1_A029 Roots minus nit... 152 2e-045
gb|CO366556.1|CO366556 RTK1_28_C09.g1_A029 Roots minus pota... 152 4e-045
gb|DR110696.1|DR110696 RTS1_12_H11.b1_A029 Roots minus sulf... 152 2e-039
gb|DR110783.1|DR110783 RTS1_12_H11.g1_A029 Roots minus sulf... 151 2e-035
gb|CO197674.1|CO197674 GEO1_8_E04.b1_A029 Root gravitropism... 147 2e-034
gb|DR168933.1|DR168933 RTPHOS1_28_G05.g1_A029 Roots minus p... 88 4e-033
gb|DR687879.1|DR687879 EST1077962 Normalized pine embryo li... 95 3e-032
gb|DR168855.1|DR168855 RTPHOS1_28_G05.b1_A029 Roots minus p... 127 2e-028
gb|CX715653.1|CX715653 RTPQ1_35_D08.g1_A032 Roots treated w... 125 8e-028
gb|DR089646.1|DR089646 RTAL1_10_B02.b1_A029 Roots plus adde... 122 1e-027
gb|CX648692.1|CX648692 COLD1_30_F12.b1_A029 Root cold Pinus... 116 4e-025
gb|CX651090.1|CX651090 COLD1_50_C05.b1_A029 Root cold Pinus... 112 6e-024
gb|CX651163.1|CX651163 COLD1_50_C05.g1_A029 Root cold Pinus... 102 9e-021
>gb|DT634393.1|DT634393 EST1149324 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG549 3' end, mRNA sequence
Length = 827
Score = 146 bits (314), Expect(2) = 9e-056
Identities = 55/118 (46%), Positives = 88/118 (74%)
Frame = -3 / +1
Query: 1089 EKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPM 910
+++VIFED++HS+ +CLA+ V + + + E ++ +R++ LRCH ++ +T+L VIP+
Sbjct: 298 QERVIFEDAKHSNAHCLAYVVKDSTRVRKVDEFRQRLRMRGLRCHPMFCRNSTQLHVIPL 477
Query: 909 HASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVKGGFNTPANRI 736
ASRSQALRYL +RWG+++ N V VGETGD+DYEE+ GLHKT+I+KG + + ++
Sbjct: 478 LASRSQALRYLFVRWGLDVANMHVFVGETGDTDYEEMLAGLHKTIILKGAVDRGSEKL 651
Score = 92.3 bits (195), Expect(2) = 9e-056
Identities = 39/96 (40%), Positives = 59/96 (61%)
Frame = -3 / +1
Query: 1365 GFVLSTSLTIAELQSVIVRTGMLPTDFDAFICNSGSDIYYPLQSSDVPSNSRVTFALDHN 1186
G VLST+LT+ E+ ++ +LP +FDA IC+SGS++YYP + S D +
Sbjct: 25 GLVLSTALTVDEILGMLNSGNILPHEFDALICSSGSELYYPTIPAYPDDGSNKKLCPDPD 204
Query: 1185 YRSHIEYRWGGEGLRKYLVKWASSVVERRGRTEKQV 1078
Y SHI+YRWGGEGLRK + +S + + + E+ +
Sbjct: 205 YDSHIDYRWGGEGLRKTMSLLTASERDGQEKQERVI 312
>gb|DR687633.1|DR687633 EST1077715 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABU74 3' end, mRNA sequence
Length = 797
Score = 146 bits (314), Expect(2) = 9e-056
Identities = 55/118 (46%), Positives = 88/118 (74%)
Frame = -3 / +2
Query: 1089 EKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPM 910
+++VIFED++HS+ +CLA+ V + + + E ++ +R++ LRCH ++ +T+L VIP+
Sbjct: 290 QERVIFEDAKHSNAHCLAYVVKDSTRVRKVDEFRQRLRMRGLRCHPMFCRNSTQLHVIPL 469
Query: 909 HASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVKGGFNTPANRI 736
ASRSQALRYL +RWG+++ N V VGETGD+DYEE+ GLHKT+I+KG + + ++
Sbjct: 470 LASRSQALRYLFVRWGLDVANMHVFVGETGDTDYEEMLAGLHKTIILKGAVDRGSEKL 643
Score = 92.3 bits (195), Expect(2) = 9e-056
Identities = 39/96 (40%), Positives = 59/96 (61%)
Frame = -3 / +2
Query: 1365 GFVLSTSLTIAELQSVIVRTGMLPTDFDAFICNSGSDIYYPLQSSDVPSNSRVTFALDHN 1186
G VLST+LT+ E+ ++ +LP +FDA IC+SGS++YYP + S D +
Sbjct: 17 GLVLSTALTVDEILGMLNSGNILPHEFDALICSSGSELYYPTIPAYPDDGSNKKLCPDPD 196
Query: 1185 YRSHIEYRWGGEGLRKYLVKWASSVVERRGRTEKQV 1078
Y SHI+YRWGGEGLRK + +S + + + E+ +
Sbjct: 197 YDSHIDYRWGGEGLRKTMSLLTASERDGQEKQERVI 304
>gb|DR057730.1|DR057730 RTNIT1_7_B04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_B04_A029 5', mRNA sequence
Length = 929
Score = 152 bits (326), Expect(3) = 1e-045
Identities = 58/118 (49%), Positives = 86/118 (72%)
Frame = -3 / +3
Query: 1116 SVVERRGRTEKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHG 937
S+ + RG + + ED+E S+ +CLA++V N + P EL++ +R++ LRCH +Y
Sbjct: 186 SMKKLRGPENSRFLAEDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQN 365
Query: 936 ATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVKG 763
+RL V+P+HASRSQALRYL +RWG+++ N V +GE GD+DYEEL GG+HKT+I+KG
Sbjct: 366 CSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKG 539
Score = 41.8 bits (85), Expect(3) = 1e-045
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -3 / +3
Query: 1194 DHNYRSHIEYRWGGEGLRKYLVK 1126
D +Y SHI+YRWG EGLRK + K
Sbjct: 129 DPDYDSHIDYRWGAEGLRKSMKK 197
Score = 29.5 bits (58), Expect(3) = 1e-045
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3 / +3
Query: 1332 ELQSVIVRTGMLPTDFDAFICNSGSDIYY 1246
E S++ G+ + FDA IC+SGS + Y
Sbjct: 6 ETISMLQSIGIKVSAFDALICSSGSQLLY 92
>gb|DR057381.1|DR057381 RTNIT1_5_B04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_5_B04_A029 5', mRNA sequence
Length = 829
Score = 152 bits (326), Expect(3) = 2e-045
Identities = 58/118 (49%), Positives = 86/118 (72%)
Frame = -3 / +3
Query: 1116 SVVERRGRTEKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHG 937
S+ + RG + + ED+E S+ +CLA++V N + P EL++ +R++ LRCH +Y
Sbjct: 192 SMKKLRGPENSRFLAEDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQN 371
Query: 936 ATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVKG 763
+RL V+P+HASRSQALRYL +RWG+++ N V +GE GD+DYEEL GG+HKT+I+KG
Sbjct: 372 CSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKG 545
Score = 41.8 bits (85), Expect(3) = 2e-045
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -3 / +3
Query: 1194 DHNYRSHIEYRWGGEGLRKYLVK 1126
D +Y SHI+YRWG EGLRK + K
Sbjct: 135 DPDYDSHIDYRWGAEGLRKSMKK 203
Score = 28.6 bits (56), Expect(3) = 2e-045
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3 / +3
Query: 1341 TIAELQSVIVRTGMLPTDFDAFICNSGSDIYY 1246
T+ E S++ + + FDA IC+SGS + Y
Sbjct: 3 TVPETISMLQSIFIKVSAFDALICSSGSQLLY 98
>gb|CO366556.1|CO366556 RTK1_28_C09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_C09_A029 5', mRNA sequence
Length = 851
Score = 152 bits (326), Expect(3) = 4e-045
Identities = 58/118 (49%), Positives = 86/118 (72%)
Frame = -3 / -2
Query: 1116 SVVERRGRTEKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHG 937
S+ + RG + + ED+E S+ +CLA++V N + P EL++ +R++ LRCH +Y
Sbjct: 697 SMKKLRGPENSRFLAEDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQN 518
Query: 936 ATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVKG 763
+RL V+P+HASRSQALRYL +RWG+++ N V +GE GD+DYEEL GG+HKT+I+KG
Sbjct: 517 CSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKG 344
Score = 41.8 bits (85), Expect(3) = 4e-045
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -3 / -2
Query: 1194 DHNYRSHIEYRWGGEGLRKYLVK 1126
D +Y SHI+YRWG EGLRK + K
Sbjct: 754 DPDYDSHIDYRWGAEGLRKSMKK 686
Score = 27.6 bits (54), Expect(3) = 4e-045
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3 / -2
Query: 1305 GMLPTDFDAFICNSGSDIYY 1246
G+ + FDA IC+SGS + Y
Sbjct: 850 GIKVSAFDALICSSGSQLLY 791
>gb|DR110696.1|DR110696 RTS1_12_H11.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_H11_A029 3', mRNA sequence
Length = 763
Score = 152 bits (326), Expect(2) = 2e-039
Identities = 58/118 (49%), Positives = 86/118 (72%)
Frame = -3 / +1
Query: 1116 SVVERRGRTEKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHG 937
S+ + RG + + ED+E S+ +CLA++V N + P EL++ +R++ LRCH +Y
Sbjct: 37 SMKKLRGPENSRFLAEDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQN 216
Query: 936 ATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVKG 763
+RL V+P+HASRSQALRYL +RWG+++ N V +GE GD+DYEEL GG+HKT+I+KG
Sbjct: 217 CSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKG 390
Score = 31.8 bits (63), Expect(2) = 2e-039
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3 / +1
Query: 1173 IEYRWGGEGLRKYLVK 1126
I+YRWG EGLRK + K
Sbjct: 1 IDYRWGAEGLRKSMKK 48
>gb|DR110783.1|DR110783 RTS1_12_H11.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_H11_A029 5', mRNA sequence
Length = 759
Score = 151 bits (324), Expect = 2e-035
Identities = 57/113 (50%), Positives = 83/113 (73%)
Frame = -3 / +2
Query: 1101 RGRTEKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLS 922
RG + + ED+E S+ +CLA++V N + P EL++ +R++ LRCH +Y +RL
Sbjct: 14 RGPENSRFLAEDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQNCSRLR 193
Query: 921 VIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVKG 763
V+P+HASRSQALRYL +RWG+++ N V +GE GD+DYEEL GG+HKT+I+KG
Sbjct: 194 VLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKG 352
>gb|CO197674.1|CO197674 GEO1_8_E04.b1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_8_E04_A029 3', mRNA sequence
Length = 669
Score = 147 bits (316), Expect = 2e-034
Identities = 55/103 (53%), Positives = 79/103 (76%)
Frame = -3 / +3
Query: 1071 EDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASRSQ 892
ED+E S+ +CLA++V N + P EL++ +R++ LRCH +Y +RL V+P+HASRSQ
Sbjct: 9 EDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQ 188
Query: 891 ALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVKG 763
ALRYL +RWG+++ N V +GE GD+DYEEL GG+HKT+I+KG
Sbjct: 189 ALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKG 317
>gb|DR168933.1|DR168933 RTPHOS1_28_G05.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_28_G05_A029 5', mRNA sequence
Length = 537
Score = 88.1 bits (186), Expect(3) = 4e-033
Identities = 35/79 (44%), Positives = 54/79 (68%)
Frame = -3 / +1
Query: 1116 SVVERRGRTEKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHG 937
S+ + RG + + ED+E S+ +CLA++V N + P EL++ +R++ LRCH +Y
Sbjct: 292 SMKKLRGPENSRFLAEDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQN 471
Query: 936 ATRLSVIPMHASRSQALRY 880
+RL V+P+HASRSQALRY
Sbjct: 472 CSRLRVLPLHASRSQALRY 528
Score = 51.0 bits (105), Expect(3) = 4e-033
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = -3 / +1
Query: 1419 IIRNSVEATRTGTMSGSTGFVLSTSLTIAELQSVIVRTGMLPTDFDAFICNSGSDIYY 1246
II+ + A + S GF+LST+LT+ E S++ G+ + FDA IC+SGS + Y
Sbjct: 25 IIQEIMNAVCSAGNFSSPGFILSTALTVPETISMLQSIGIKVSAFDALICSSGSQLLY 198
Score = 41.8 bits (85), Expect(3) = 4e-033
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -3 / +1
Query: 1194 DHNYRSHIEYRWGGEGLRKYLVK 1126
D +Y SHI+YRWG EGLRK + K
Sbjct: 235 DPDYDSHIDYRWGAEGLRKSMKK 303
>gb|DR687879.1|DR687879 EST1077962 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABX65 3' end, mRNA sequence
Length = 746
Score = 94.5 bits (200), Expect(2) = 3e-032
Identities = 37/57 (64%), Positives = 49/57 (85%)
Frame = -2 / +2
Query: 1804 EQFGVTLIEAAMHGLPVIATKNGAPVEIYQVLENGLLVDPHDQHAIADALYKMLSEK 1634
E FG+TLIEAA +GLP++ATKNG PV+I+ L NGLLVDPHDQ AIA+AL +++++K
Sbjct: 323 EPFGLTLIEAAAYGLPMVATKNGGPVDIHSTLTNGLLVDPHDQKAIANALLELVTDK 493
Score = 65.7 bits (137), Expect(2) = 3e-032
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3 / +2
Query: 1623 SRCRENGLKNIHQFSWPEHCKNYLSRISSLGPRHP 1519
+ CR NGL+NIH FSWPEHC+ YLSR+ RHP
Sbjct: 503 NECRRNGLRNIHLFSWPEHCRKYLSRVDVCRMRHP 607
>gb|DR168855.1|DR168855 RTPHOS1_28_G05.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_28_G05_A029 3', mRNA sequence
Length = 763
Score = 127 bits (272), Expect = 2e-028
Identities = 46/82 (56%), Positives = 64/82 (78%)
Frame = -3 / +2
Query: 1008 PPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVG 829
P EL++ +R++ LRCH +Y +RL V+P+HASRSQALRYL +RWG+++ N V +G
Sbjct: 2 PKADELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLG 181
Query: 828 ETGDSDYEELFGGLHKTVIVKG 763
E GD+DYEEL GG+HKT+I+KG
Sbjct: 182 EKGDTDYEELIGGMHKTLILKG 247
>gb|CX715653.1|CX715653 RTPQ1_35_D08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_35_D08_A032 5', mRNA sequence
Length = 603
Score = 125 bits (268), Expect = 8e-028
Identities = 45/78 (57%), Positives = 63/78 (80%)
Frame = -3 / +1
Query: 996 ELQKLMRIQSLRCHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGD 817
EL++ +R++ LRCH +Y +RL V+P+HASRSQALRYL +RWG+++ N V +GE GD
Sbjct: 16 ELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGD 195
Query: 816 SDYEELFGGLHKTVIVKG 763
+DYEEL GG+HKT+I+KG
Sbjct: 196 TDYEELIGGMHKTLILKG 249
>gb|DR089646.1|DR089646 RTAL1_10_B02.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_B02_A029 3', mRNA sequence
Length = 882
Score = 122 bits (261), Expect(2) = 1e-027
Identities = 47/75 (62%), Positives = 59/75 (78%)
Frame = -3 / +3
Query: 987 KLMRIQSLRCHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDY 808
K +R+Q RCH +Y H ++L VIP+ ASRSQALRYL RWG+E+ N V +GETGD+DY
Sbjct: 3 KQLRMQGFRCHVIYCHKGSKLHVIPLLASRSQALRYLFTRWGMEVTNMFVFIGETGDTDY 182
Query: 807 EELFGGLHKTVIVKG 763
EEL GGLHKT+I+KG
Sbjct: 183 EELLGGLHKTIILKG 227
Score = 22.6 bits (43), Expect(2) = 1e-027
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3 / +3
Query: 744 NRIHTVRRYPLQDVVALDSSNIIGIE 667
N + + Y +DVV L+S NI+ E
Sbjct: 249 NLLRSNSSYVKEDVVPLNSQNIVMTE 326
>gb|CX648692.1|CX648692 COLD1_30_F12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_30_F12_A029 3', mRNA sequence
Length = 705
Score = 116 bits (249), Expect = 4e-025
Identities = 42/68 (61%), Positives = 55/68 (80%)
Frame = -3 / +2
Query: 966 LRCHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGL 787
LRCH +Y +RL V+P+HASRSQALRYL +RWG+++ N V +GE GD+DYEEL GG+
Sbjct: 2 LRCHVIYTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGM 181
Query: 786 HKTVIVKG 763
HKT+I+KG
Sbjct: 182 HKTLILKG 205
>gb|CX651090.1|CX651090 COLD1_50_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_C05_A029 3', mRNA sequence
Length = 699
Score = 112 bits (240), Expect(2) = 6e-024
Identities = 40/66 (60%), Positives = 53/66 (80%)
Frame = -3 / +3
Query: 960 CHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHK 781
CH +Y +RL V+P+HASRSQALRYL +RWG+++ N V +GE GD+DYEEL GG+HK
Sbjct: 3 CHVIYTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHK 182
Query: 780 TVIVKG 763
T+I+KG
Sbjct: 183 TLILKG 200
Score = 23.1 bits (44), Expect(2) = 6e-024
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2 / +3
Query: 526 SILLEMSDFACQSFNVCV 473
S L+ S F C+++N C+
Sbjct: 624 SFTLQQSTFVCKAWNKCL 677
>gb|CX651163.1|CX651163 COLD1_50_C05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_C05_A029 5', mRNA sequence
Length = 608
Score = 102 bits (217), Expect = 9e-021
Identities = 37/62 (59%), Positives = 50/62 (80%)
Frame = -3 / +2
Query: 948 YNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIV 769
+ +RL V+P+HASRSQALRYL +RWG+++ N V +GE GD+DYEEL GG+HKT+I+
Sbjct: 8 FTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLIL 187
Query: 768 KG 763
KG
Sbjct: 188 KG 193
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,034,745,989
Number of Sequences: 355925
Number of extensions: 15903442
Number of successful extensions: 69083
Number of sequences better than 1.0e-020: 16
length of database: 72,425,745
effective HSP length: 55
effective length of database: 52,849,870
effective search space used: 29278827980
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)