TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.2
(595 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stresse... 203 8e-052
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 201 4e-051
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 201 4e-051
gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated wi... 190 8e-048
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 190 8e-048
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 190 8e-048
gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus p... 190 8e-048
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 190 8e-048
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 190 8e-048
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 181 5e-045
gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus pota... 176 1e-043
gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciat... 172 1e-042
gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus add... 168 3e-041
gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Plani... 166 1e-040
gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulf... 158 3e-038
gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library P... 129 6e-035
gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch ... 143 1e-033
gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch ... 142 2e-033
gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus adde... 135 6e-033
gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo li... 100 2e-029
gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciat... 123 8e-028
gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus... 123 1e-027
gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Plani... 122 3e-027
gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus ni... 117 7e-026
gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late w... 111 6e-024
gb|BX252912.1|BX252912 BX252912 Pinus pinaster differenciat... 105 2e-022
>gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C09_A021 5', mRNA sequence
Length = 797
Score = 203 bits (438), Expect = 8e-052
Identities = 70/113 (61%), Positives = 93/113 (82%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +W+KQ+IT +YH WQ +NE+R+LWKLGTLP GL+TF+ T PLD+SWH LGLGY
Sbjct: 735 NVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDKSWHVLGLGY 556
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
NP+V+ +I AAV+HYNGN+KPWLE+ + KYR YW+ ++ YD FL++CNIN
Sbjct: 555 NPSVDRLEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPFLQQCNIN 397
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 201 bits (433), Expect = 4e-051
Identities = 73/113 (64%), Positives = 90/113 (79%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +WRKQ IT +YH WQ LN++R LWKLGTLP GL+TF++ TF LD+SWH LGLGY
Sbjct: 116 NIFDLEEWRKQGITGIYHQWQNLNKDRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGY 295
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
NPNV+ +I RAAVIHYNGN+KPWL+I +PKYR YW+ +V YD CNI+
Sbjct: 296 NPNVDSTEIERAAVIHYNGNMKPWLDIAIPKYRHYWTKYVKYDXXXXXLCNIS 454
Score = 110 bits (234), Expect = 1e-023
Identities = 56/112 (50%), Positives = 65/112 (58%)
Frame = -1 / -1
Query: 337 MLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARLISLTLTFGLYPSPN*CH 158
+LHS *S T Q Y G ISS GF PL* +TAA IS+ T GL P P C
Sbjct: 450 ILHSXXXX*SYFTYLVQ*CLYLGMAISSHGFILPL*CITAALSISVESTLGL*PRPRTCQ 271
Query: 157 ERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
+ S+ NVR KV P GRVP+FHN L F FC W* V+ CFL S +SN+F
Sbjct: 270 DLSKTNVR**KVISPGGRVPNFHNCLSLFRFCH*W*IPVIPCFLHSSRSNIF 115
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 201 bits (433), Expect = 4e-051
Identities = 73/113 (64%), Positives = 90/113 (79%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +WRKQ IT +YH WQ LN++R LWKLGTLP GL+TF++ TF LD+SWH LGLGY
Sbjct: 116 NIFDLEEWRKQGITGIYHQWQNLNKDRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGY 295
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
NPNV+ +I RAAVIHYNGN+KPWL+I +PKYR YW+ +V YD CNI+
Sbjct: 296 NPNVDSTEIERAAVIHYNGNMKPWLDIAIPKYRHYWTKYVKYDXXXXXLCNIS 454
Score = 110 bits (234), Expect = 1e-023
Identities = 56/112 (50%), Positives = 65/112 (58%)
Frame = -1 / -1
Query: 337 MLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARLISLTLTFGLYPSPN*CH 158
+LHS *S T Q Y G ISS GF PL* +TAA IS+ T GL P P C
Sbjct: 450 ILHSXXXX*SYFTYLVQ*CLYLGMAISSHGFILPL*CITAALSISVESTLGL*PRPRTCQ 271
Query: 157 ERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
+ S+ NVR KV P GRVP+FHN L F FC W* V+ CFL S +SN+F
Sbjct: 270 DLSKTNVR**KVISPGGRVPNFHNCLSLFRFCH*W*IPVIPCFLHSSRSNIF 115
>gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 3', mRNA sequence
Length = 702
Score = 190 bits (409), Expect = 8e-048
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ T PLD+SWH LGLGY
Sbjct: 83 NFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 262
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSG 362
NP++++ +IR AAV+H+NGN+KPWL+IG+ +YR W+ +V+YD F++ CN * S
Sbjct: 263 NPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNFGH*KKISR 442
Query: 363 AW 368
W
Sbjct: 443 IW 448
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 190 bits (409), Expect = 8e-048
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ T PLD+SWH LGLGY
Sbjct: 161 NFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 340
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSG 362
NP++++ +IR AAV+H+NGN+KPWL+IG+ +YR W+ +V+YD F++ CN * S
Sbjct: 341 NPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNFGH*KKISR 520
Query: 363 AW 368
W
Sbjct: 521 IW 526
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 190 bits (409), Expect = 8e-048
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +3 / +3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ T PLD+SWH LGLGY
Sbjct: 297 NFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 476
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSG 362
NP++++ +IR AAV+H+NGN+KPWL+IG+ +YR W+ +V+YD F++ CN * S
Sbjct: 477 NPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNFGH*KKISR 656
Query: 363 AW 368
W
Sbjct: 657 IW 662
>gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_A06_A029 3', mRNA sequence
Length = 710
Score = 190 bits (409), Expect = 8e-048
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +3 / +3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ T PLD+SWH LGLGY
Sbjct: 108 NFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 287
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSG 362
NP++++ +IR AAV+H+NGN+KPWL+IG+ +YR W+ +V+YD F++ CN * S
Sbjct: 288 NPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNFGH*KKISR 467
Query: 363 AW 368
W
Sbjct: 468 IW 473
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 190 bits (409), Expect = 8e-048
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ T PLD+SWH LGLGY
Sbjct: 281 NFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 460
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSG 362
NP++++ +IR AAV+H+NGN+KPWL+IG+ +YR W+ +V+YD F++ CN * S
Sbjct: 461 NPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNFGH*KKISR 640
Query: 363 AW 368
W
Sbjct: 641 IW 646
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 190 bits (409), Expect = 8e-048
Identities = 68/122 (55%), Positives = 90/122 (73%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ T PLD+SWH LGLGY
Sbjct: 289 NFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 468
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSG 362
NP++++ +IR AAV+H+NGN+KPWL+IG+ +YR W+ +V+YD F++ CN * S
Sbjct: 469 NPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNFGH*KKISR 648
Query: 363 AW 368
W
Sbjct: 649 IW 654
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 181 bits (389), Expect = 5e-045
Identities = 62/100 (62%), Positives = 83/100 (83%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +W+KQ+IT +YH WQ +NE+R+LWKLGTLP GL+TF+ T PLD+SWH LGLGY
Sbjct: 563 NVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDKSWHVLGLGY 742
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHV 302
NP+V+ +I AAV+HYNGN+KPWLE+ + KYR YW+ ++
Sbjct: 743 NPSVDRLEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYI 862
>gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C05_A029 5', mRNA sequence
Length = 912
Score = 176 bits (379), Expect = 1e-043
Identities = 63/113 (55%), Positives = 86/113 (76%)
Frame = +3 / -1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL W+K N+T YH WQ+ N +R LWKLGTLP GL+TF+ T PLDR WH LGLGY
Sbjct: 522 NVFDLVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGY 343
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
+PNV+++ I AV+HYNGN+KPWL++ + +Y+ +W +VNY FL++CNI+
Sbjct: 342 DPNVDMQLIESGAVLHYNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKCNIH 184
>gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E08, mRNA sequence
Length = 629
Score = 172 bits (371), Expect = 1e-042
Identities = 61/106 (57%), Positives = 81/106 (76%)
Frame = +3 / -1
Query: 51 YHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIH 230
YH WQ LNENR LWKLGTLP GL+T++ T PLD+SWH LGLGYNP++++ +IR AAV+H
Sbjct: 629 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 450
Query: 231 YNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSGAW 368
+NGN+KPWL+IG+ +YR W+ +V+YD F++ CN * S W
Sbjct: 449 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFGH*KKISRIW 312
>gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C09_A029 5', mRNA sequence
Length = 822
Score = 168 bits (361), Expect = 3e-041
Identities = 59/106 (55%), Positives = 81/106 (76%)
Frame = +3 / -3
Query: 24 WRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVK 203
W+K N+T YH WQ+ N +R LWKLGTLP GL+TF+ T PLDR WH LGLGY+PNV+++
Sbjct: 811 WKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQ 632
Query: 204 DIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
I AV+HYNGN+KPWL++ + +Y+ +W +VNY FL++CNI+
Sbjct: 631 LIESGAVLHYNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKCNIH 494
>gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_093_C03 5' similar to Arabidopsis
thaliana sequence At3g25140 glycosyl transferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 326
Score = 166 bits (357), Expect = 1e-040
Identities = 58/103 (56%), Positives = 76/103 (73%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ T PLD+SWH LGLGY
Sbjct: 13 NFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 192
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYD 311
NP++++ +IR A V H+NGN+KPWL+ + +YR W+ + YD
Sbjct: 193 NPSISMDEIRNAXVXHFNGNMKPWLDXXMNQYRDTWTKYXXYD 321
>gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_29_B07_A029 3', mRNA sequence
Length = 688
Score = 158 bits (340), Expect = 3e-038
Identities = 56/110 (50%), Positives = 78/110 (70%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL W+ N+T YH WQ+ N +R LWKLGTLP GL++F+ T PLDR WH LGLGY
Sbjct: 305 NVFDLVAWKNANVTSRYHYWQEQNVDRTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGY 484
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLREC 332
+ N++ + I AVIH+NGN+KPWL++ + +Y+ W +VNY L++C
Sbjct: 485 DLNIDEQLIESGAVIHFNGNMKPWLKLAMKRYKAIWEMYVNYSHPLLQQC 634
>gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 522
Score = 129 bits (277), Expect(2) = 6e-035
Identities = 48/104 (46%), Positives = 70/104 (67%)
Frame = +3 / +3
Query: 72 NENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKP 251
N + W+ GTLPA L+TF+N T L+ SW +GLG++ ++ DI ++ V+HYNGNLKP
Sbjct: 198 NRYNIPWRFGTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKP 377
Query: 252 WLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSGAWFISFS 383
WLEIG+ KY+ YW+ ++ + F+ ECN+N * + W IS S
Sbjct: 378 WLEIGINKYKPYWAKYLKQEGQFMLECNVNG*CCDIFMWIISQS 509
Score = 37.7 bits (76), Expect(2) = 6e-035
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 3 NMFDLGDWRKQNITEVYHTWQKL 71
N+ DL WRKQ++T+VY W K+
Sbjct: 126 NIIDLQQWRKQDLTKVYRRWLKM 194
>gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 5', mRNA sequence
Length = 716
Score = 143 bits (306), Expect = 1e-033
Identities = 51/94 (54%), Positives = 70/94 (74%)
Frame = +3 / +1
Query: 87 LWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIG 266
LWKLGTLP GL+TF+ T PLD+SWH GLGYNP++++ +IR AAV+H+NG +KPWL+IG
Sbjct: 7 LWKLGTLPPGLITFYKTTKPLDKSWHVFGLGYNPSISMDEIRNAAVVHFNGFMKPWLDIG 186
Query: 267 LPKYRKYWSAHVNYDQVFLRECNINP*TANSGAW 368
+ +YR W+ +V+YD F++ CN * S W
Sbjct: 187 MNQYRDTWTKYVDYDMEFVQMCNFGH*KKISRIW 288
>gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 3', mRNA sequence
Length = 690
Score = 142 bits (304), Expect = 2e-033
Identities = 49/93 (52%), Positives = 70/93 (75%)
Frame = +3 / +1
Query: 90 WKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGL 269
WKLGTLP GL+T++ T PLD+SWH LG GYNP++++ +IR AAV+H+NGN+KPWL+IG+
Sbjct: 1 WKLGTLPPGLITYYKTTKPLDKSWHVLGFGYNPSISMDEIRNAAVVHFNGNMKPWLDIGM 180
Query: 270 PKYRKYWSAHVNYDQVFLRECNINP*TANSGAW 368
+YR W+ +V++D F++ CN * S W
Sbjct: 181 NQYRDTWTKYVDFDMEFVQMCNFGH*KKISRIW 279
>gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_F03_A029 5', mRNA sequence
Length = 764
Score = 135 bits (289), Expect(2) = 6e-033
Identities = 46/96 (47%), Positives = 64/96 (66%)
Frame = +3 / -2
Query: 51 YHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIH 230
Y + LN N LW+LGTLP L+ F P+D SWH LGLGY P ++ ++R+AAVIH
Sbjct: 643 YWLKENLNSNLTLWRLGTLPPALIAFNGHVHPIDPSWHMLGLGYQPETDLNNVRKAAVIH 464
Query: 231 YNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNI 338
YNG KPWL+I P+ R +W+ ++NY F++ C+I
Sbjct: 463 YNGQAKPWLDIAFPELRPFWTKYINYSNEFIKNCHI 356
Score = 25.4 bits (49), Expect(2) = 6e-033
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2 / -1
Query: 2 EHV*FGRLEKAKHH*GLPYLA 64
EH+*F LEK KH L LA
Sbjct: 698 EHL*FASLEKDKHPGNLSLLA 636
>gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFX37 3' end, mRNA sequence
Length = 812
Score = 100 bits (214), Expect(2) = 2e-029
Identities = 34/53 (64%), Positives = 45/53 (84%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSW 161
N+FDL +W+KQ+IT +YH WQ +NE+R+LWKLGTLP GL+TF+ T PLD+SW
Sbjct: 571 NVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDKSW 729
Score = 48.3 bits (99), Expect(2) = 2e-029
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 162 HQLGLGYNPNVNVKDIRRAAVIHYNGN 242
H LGLGYNP+V+ +I AAV+HYNGN
Sbjct: 731 HVLGLGYNPSVDRLEIDNAAVVHYNGN 811
>gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038D10, mRNA sequence
Length = 370
Score = 123 bits (264), Expect = 8e-028
Identities = 44/96 (45%), Positives = 60/96 (62%)
Frame = +3 / +2
Query: 51 YHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIH 230
Y + LN N LW++GTLP L+ F P+D SWH LGLGY P N+ ++ AAVIH
Sbjct: 26 YWLKKNLNSNLRLWRMGTLPPALIAFNGLVHPIDSSWHMLGLGYQPRTNLDSVQSAAVIH 205
Query: 231 YNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNI 338
YNG KPWL+I + R W+ +V++ F++ CNI
Sbjct: 206 YNGRAKPWLDIAFHELRPLWAKYVDFSDEFIKRCNI 313
>gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 3', mRNA sequence
Length = 659
Score = 123 bits (263), Expect = 1e-027
Identities = 44/96 (45%), Positives = 60/96 (62%)
Frame = +3 / +3
Query: 51 YHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIH 230
Y + LN N LW++GTLP L+ F P+D SWH LGLGY P N+ ++ AAVIH
Sbjct: 210 YWLKKNLNSNLRLWRMGTLPPALIAFNGLVHPIDPSWHMLGLGYQPRTNLDSVQSAAVIH 389
Query: 231 YNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNI 338
YNG KPWL+I + R W+ +V++ F++ CNI
Sbjct: 390 YNGRAKPWLDIAFHELRPLWAKYVDFSDEFIKRCNI 497
>gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_019_E12 5' similar to Arabidopsis
thaliana sequence At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 365
Score = 122 bits (260), Expect = 3e-027
Identities = 46/95 (48%), Positives = 66/95 (69%)
Frame = +3 / +1
Query: 99 GTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKY 278
GTLPA L+TF+N T L+ SW +GLG++ ++ DI ++ V+HYNGNLKPWLEIG+ KY
Sbjct: 4 GTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKPWLEIGINKY 183
Query: 279 RKYWSAHVNYDQVFLRECNINP*TANSGAWFISFS 383
+ YW+ ++ + F+ ECN+N * + W IS S
Sbjct: 184 KPYWAKYLKQEGQFMLECNVNG*CCDIFMWXISQS 288
>gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_E10_A029 3', mRNA sequence
Length = 793
Score = 117 bits (250), Expect = 7e-026
Identities = 41/80 (51%), Positives = 59/80 (73%)
Frame = +3 / +3
Query: 129 WNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNY 308
+ T PLD+SWH LGLGYNP++++ +IR AAV+H+NGN+KPWL+IG+ +YR W+ +V+Y
Sbjct: 3 YKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDY 182
Query: 309 DQVFLRECNINP*TANSGAW 368
D F++ CN * S W
Sbjct: 183 DMEFVQMCNFGH*KKISRIW 242
>gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV085_F11 5' similar to Arabidopsis thaliana
sequence At2g20807 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 732
Score = 111 bits (236), Expect = 6e-024
Identities = 41/67 (61%), Positives = 52/67 (77%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL W+K N+T YH WQ+ N +R LWKLGTLP GL+TF+ T PLDR WH LGLGY
Sbjct: 470 NVFDLVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGY 649
Query: 183 NPNVNVK 203
+PNV+++
Sbjct: 650 DPNVDMQ 670
>gb|BX252912.1|BX252912 BX252912 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP074G08, mRNA sequence
Length = 317
Score = 105 bits (225), Expect = 2e-022
Identities = 37/79 (46%), Positives = 50/79 (63%)
Frame = +3 / +2
Query: 102 TLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYR 281
TLP L+ F P+D SWH LGLGY P N+ ++ AAVIHYNG KPWL+I + R
Sbjct: 2 TLPPALIAFNGLVHPIDSSWHMLGLGYQPRTNLDSVQSAAVIHYNGRAKPWLDIAFHELR 181
Query: 282 KYWSAHVNYDQVFLRECNI 338
W+ +V++ F++ CNI
Sbjct: 182 PLWAKYVDFSDEFIKRCNI 238
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 328,725,168
Number of Sequences: 355925
Number of extensions: 4745408
Number of successful extensions: 42067
Number of sequences better than 1.0e-020: 31
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7923941220
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)