TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.1
(689 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stresse... 107 5e-048
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 106 1e-046
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 106 1e-046
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 103 3e-044
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 103 3e-044
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 103 3e-044
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 103 3e-044
gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus p... 103 3e-044
gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated wi... 103 3e-044
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 107 7e-041
gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus pota... 95 3e-039
gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulf... 92 3e-036
gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Plani... 90 3e-034
gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciat... 69 1e-031
gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo li... 107 8e-031
gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus add... 65 4e-030
gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus adde... 63 6e-029
gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library P... 51 8e-028
gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus... 60 3e-024
gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late w... 90 4e-024
gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch ... 63 6e-023
gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch ... 68 1e-022
gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calc... 101 4e-021
gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iro... 100 8e-021
>gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C09_A021 5', mRNA sequence
Length = 797
Score = 107 bits (229), Expect(3) = 5e-048
Identities = 36/52 (69%), Positives = 46/52 (88%)
Frame = +2 / -3
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
+ACGWAYGMN+FDL W+KQ+IT +YH WQ +NE+R+LWKLGTLP GL+TF+
Sbjct: 762 NACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFY 607
Score = 66.6 bits (139), Expect(3) = 5e-048
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1 / -3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+V+ +I A V+H+NGN+K
Sbjct: 600 THPLDKSWHVLGLGYNPSVDRLEIDNAAVVHYNGNMK 490
Score = 55.6 bits (115), Expect(3) = 5e-048
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2 / -3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WLE+ + KYR YW+ ++ YD FLQ+CNIN
Sbjct: 486 WLELAMTKYRPYWTKYIKYDHPFLQQCNIN 397
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 106 bits (227), Expect(3) = 1e-046
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +2 / +2
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWN 160
+ACGWAYGMN+FDL WRKQ IT +YH WQ LN++R LWKLGTLP GL+TF++
Sbjct: 89 NACGWAYGMNIFDLEEWRKQGITGIYHQWQNLNKDRQLWKLGTLPPGLITFYH 247
Score = 72.1 bits (151), Expect(3) = 1e-046
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
TF LD+SWH LGLGYNPNV+ +I RA VIH+NGN+K
Sbjct: 251 TFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMK 361
Score = 46.4 bits (95), Expect(3) = 1e-046
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WL+I +PKYR YW+ +V YD CNI+
Sbjct: 365 WLDIAIPKYRHYWTKYVKYDXXXXXLCNIS 454
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 106 bits (227), Expect(3) = 1e-046
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +2 / +2
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWN 160
+ACGWAYGMN+FDL WRKQ IT +YH WQ LN++R LWKLGTLP GL+TF++
Sbjct: 89 NACGWAYGMNIFDLEEWRKQGITGIYHQWQNLNKDRQLWKLGTLPPGLITFYH 247
Score = 72.1 bits (151), Expect(3) = 1e-046
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
TF LD+SWH LGLGYNPNV+ +I RA VIH+NGN+K
Sbjct: 251 TFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMK 361
Score = 46.4 bits (95), Expect(3) = 1e-046
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WL+I +PKYR YW+ +V YD CNI+
Sbjct: 365 WLDIAIPKYRHYWTKYVKYDXXXXXLCNIS 454
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 103 bits (219), Expect(3) = 3e-044
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = +2 / +2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
ACGWAYGMN F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ + L
Sbjct: 137 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPL 307
Score = 69.3 bits (145), Expect(3) = 3e-044
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +IR A V+HFNGN+K
Sbjct: 296 TKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMK 406
Score = 44.6 bits (91), Expect(3) = 3e-044
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+IG+ +YR W+ +V+YD F+Q CN
Sbjct: 410 WLDIGMNQYRDTWTKYVDYDMEFVQMCN 493
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 103 bits (219), Expect(3) = 3e-044
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = +2 / +2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
ACGWAYGMN F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ + L
Sbjct: 257 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPL 427
Score = 69.3 bits (145), Expect(3) = 3e-044
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +IR A V+HFNGN+K
Sbjct: 416 TKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMK 526
Score = 44.6 bits (91), Expect(3) = 3e-044
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+IG+ +YR W+ +V+YD F+Q CN
Sbjct: 530 WLDIGMNQYRDTWTKYVDYDMEFVQMCN 613
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 103 bits (219), Expect(3) = 3e-044
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = +2 / +3
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
ACGWAYGMN F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ + L
Sbjct: 273 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPL 443
Score = 69.3 bits (145), Expect(3) = 3e-044
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +1 / +3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +IR A V+HFNGN+K
Sbjct: 432 TKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMK 542
Score = 44.6 bits (91), Expect(3) = 3e-044
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+IG+ +YR W+ +V+YD F+Q CN
Sbjct: 546 WLDIGMNQYRDTWTKYVDYDMEFVQMCN 629
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 103 bits (219), Expect(3) = 3e-044
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = +2 / +1
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
ACGWAYGMN F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ + L
Sbjct: 265 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPL 435
Score = 69.3 bits (145), Expect(3) = 3e-044
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +1 / +1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +IR A V+HFNGN+K
Sbjct: 424 TKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMK 534
Score = 44.6 bits (91), Expect(3) = 3e-044
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+IG+ +YR W+ +V+YD F+Q CN
Sbjct: 538 WLDIGMNQYRDTWTKYVDYDMEFVQMCN 621
>gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_A06_A029 3', mRNA sequence
Length = 710
Score = 103 bits (219), Expect(3) = 3e-044
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = +2 / +3
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
ACGWAYGMN F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ + L
Sbjct: 84 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPL 254
Score = 69.3 bits (145), Expect(3) = 3e-044
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +1 / +3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +IR A V+HFNGN+K
Sbjct: 243 TKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMK 353
Score = 44.6 bits (91), Expect(3) = 3e-044
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+IG+ +YR W+ +V+YD F+Q CN
Sbjct: 357 WLDIGMNQYRDTWTKYVDYDMEFVQMCN 440
>gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 3', mRNA sequence
Length = 702
Score = 103 bits (219), Expect(3) = 3e-044
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = +2 / +2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
ACGWAYGMN F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ + L
Sbjct: 59 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPL 229
Score = 69.3 bits (145), Expect(3) = 3e-044
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +IR A V+HFNGN+K
Sbjct: 218 TKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMK 328
Score = 44.6 bits (91), Expect(3) = 3e-044
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+IG+ +YR W+ +V+YD F+Q CN
Sbjct: 332 WLDIGMNQYRDTWTKYVDYDMEFVQMCN 415
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 107 bits (229), Expect(3) = 7e-041
Identities = 36/52 (69%), Positives = 46/52 (88%)
Frame = +2 / +2
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
+ACGWAYGMN+FDL W+KQ+IT +YH WQ +NE+R+LWKLGTLP GL+TF+
Sbjct: 536 NACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFY 691
Score = 66.6 bits (139), Expect(3) = 7e-041
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+V+ +I A V+H+NGN+K
Sbjct: 698 THPLDKSWHVLGLGYNPSVDRLEIDNAAVVHYNGNMK 808
Score = 31.3 bits (62), Expect(3) = 7e-041
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHV 331
WLE+ + KYR YW+ ++
Sbjct: 812 WLELAMTKYRPYWTKYI 862
>gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C05_A029 5', mRNA sequence
Length = 912
Score = 95.5 bits (202), Expect(3) = 3e-039
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = +2 / -1
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
ACGWA+GMN+FDL W+K N+T YH WQ+ N +R LWKLGTLP GL+TF+
Sbjct: 546 ACGWAFGMNVFDLVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFY 394
Score = 60.2 bits (125), Expect(3) = 3e-039
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +1 / -1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLDR WH LGLGY+PNV+ + I V+H+NGN+K
Sbjct: 387 TEPLDRRWHILGLGYDPNVDMQLIESGAVLHYNGNMK 277
Score = 44.6 bits (91), Expect(3) = 3e-039
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2 / -1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WL++ + +Y+ +W +VNY FLQ+CNI+
Sbjct: 273 WLKLAMNRYKSFWEKYVNYLHPFLQKCNIH 184
>gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_29_B07_A029 3', mRNA sequence
Length = 688
Score = 91.8 bits (194), Expect(3) = 3e-036
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +2 / +2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
ACGWA+GMN+FDL W+ N+T YH WQ+ N +R LWKLGTLP GL++F+
Sbjct: 281 ACGWAFGMNVFDLVAWKNANVTSRYHYWQEQNVDRTLWKLGTLPPGLLSFY 433
Score = 61.1 bits (127), Expect(3) = 3e-036
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLDR WH LGLGY+ N++E+ I VIHFNGN+K
Sbjct: 440 TEPLDRRWHVLGLGYDLNIDEQLIESGAVIHFNGNMK 550
Score = 37.3 bits (75), Expect(3) = 3e-036
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQEC 361
WL++ + +Y+ W +VNY LQ+C
Sbjct: 554 WLKLAMKRYKAIWEMYVNYSHPLLQQC 634
>gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_093_C03 5' similar to Arabidopsis
thaliana sequence At3g25140 glycosyl transferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 326
Score = 89.5 bits (189), Expect(3) = 3e-034
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +2 / +1
Query: 17 AYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AYGMN F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++ + L
Sbjct: 1 AYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPL 159
Score = 67.5 bits (141), Expect(3) = 3e-034
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1 / +1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +IR A V HFNGN+K
Sbjct: 148 TKPLDKSWHVLGLGYNPSISMDEIRNAXVXHFNGNMK 258
Score = 25.4 bits (49), Expect(3) = 3e-034
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2 / +1
Query: 281 WLEIGLPKYRKYWSAHVNYD 340
WL+ + +YR W+ + YD
Sbjct: 262 WLDXXMNQYRDTWTKYXXYD 321
>gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E08, mRNA sequence
Length = 629
Score = 69.3 bits (145), Expect(3) = 1e-031
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +1 / -1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +IR A V+HFNGN+K
Sbjct: 542 TKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMK 432
Score = 60.2 bits (125), Expect(3) = 1e-031
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = +2 / -1
Query: 77 YHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
YH WQ LNENR LWKLGTLP GL+T++ + L
Sbjct: 629 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPL 531
Score = 45.1 bits (92), Expect(3) = 1e-031
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / -1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+IG+ +YR W+ +V+YD F+Q CN
Sbjct: 428 WLDIGMNQYRDTWTKYVDYDMEFIQMCN 345
>gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFX37 3' end, mRNA sequence
Length = 812
Score = 107 bits (229), Expect(2) = 8e-031
Identities = 36/52 (69%), Positives = 46/52 (88%)
Frame = +2 / +1
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
+ACGWAYGMN+FDL W+KQ+IT +YH WQ +NE+R+LWKLGTLP GL+TF+
Sbjct: 544 NACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITFY 699
Score = 46.0 bits (94), Expect(2) = 8e-031
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 190 HQLGLGYNPNVNEKDIRRATVIHFNGN 270
H LGLGYNP+V+ +I A V+H+NGN
Sbjct: 731 HVLGLGYNPSVDRLEIDNAAVVHYNGN 811
>gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C09_A029 5', mRNA sequence
Length = 822
Score = 64.8 bits (135), Expect(3) = 4e-030
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +2 / -3
Query: 41 LSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
L W+K N+T YH WQ+ N +R LWKLGTLP GL+TF+
Sbjct: 820 LVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFY 704
Score = 60.2 bits (125), Expect(3) = 4e-030
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +1 / -3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLDR WH LGLGY+PNV+ + I V+H+NGN+K
Sbjct: 697 TEPLDRRWHILGLGYDPNVDMQLIESGAVLHYNGNMK 587
Score = 44.6 bits (91), Expect(3) = 4e-030
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2 / -3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WL++ + +Y+ +W +VNY FLQ+CNI+
Sbjct: 583 WLKLAMNRYKSFWEKYVNYLHPFLQKCNIH 494
>gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_F03_A029 5', mRNA sequence
Length = 764
Score = 63.4 bits (132), Expect(3) = 6e-029
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = +2 / -2
Query: 8 CGWAYGMNMFDLSGWRKQNITEVYHTWQKLNEN 106
C WAYGMN+FDL WRK NI E YH W K N N
Sbjct: 718 CAWAYGMNIFDLQAWRKTNIRETYHYWLKENLN 620
Score = 60.2 bits (125), Expect(3) = 6e-029
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +1 / -2
Query: 163 HTFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
H P+D SWH LGLGY P + ++R+A VIH+NG K
Sbjct: 559 HVHPIDPSWHMLGLGYQPETDLNNVRKAAVIHYNGQAK 446
Score = 41.8 bits (85), Expect(3) = 6e-029
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2 / -2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNI 367
WL+I P+ R +W+ ++NY F++ C+I
Sbjct: 442 WLDIAFPELRPFWTKYINYSNEFIKNCHI 356
>gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 522
Score = 51.5 bits (106), Expect(4) = 8e-028
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2 / +3
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKL 97
+AC W G+N+ DL WRKQ++T+VY W K+
Sbjct: 99 NACAWMSGLNIIDLQQWRKQDLTKVYRRWLKM 194
Score = 46.9 bits (96), Expect(4) = 8e-028
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +2 / +3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WLEIG+ KY+ YW+ ++ + F+ ECN+N
Sbjct: 378 WLEIGINKYKPYWAKYLKQEGQFMLECNVN 467
Score = 46.0 bits (94), Expect(4) = 8e-028
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +1 / +3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T L+ SW +GLG++ +++ DI ++ V+H+NGNLK
Sbjct: 264 THRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLK 374
Score = 34.5 bits (69), Expect(4) = 8e-028
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2 / +3
Query: 98 NENRLLWKLGTLPAGLVTFWNRIRSL 175
N + W+ GTLPA L+TF+N L
Sbjct: 198 NRYNIPWRFGTLPASLITFYNMTHRL 275
>gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 3', mRNA sequence
Length = 659
Score = 59.7 bits (124), Expect(3) = 3e-024
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +2 / +3
Query: 8 CGWAYGMNMFDLSGWRKQNITEVYHTWQKLNEN 106
C WAYGMN+ DL WR+ NI E YH W K N N
Sbjct: 135 CAWAYGMNILDLQAWRRTNIKETYHYWLKKNLN 233
Score = 55.1 bits (114), Expect(3) = 3e-024
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1 / +3
Query: 172 PLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
P+D SWH LGLGY P N ++ A VIH+NG K
Sbjct: 303 PIDPSWHMLGLGYQPRTNLDSVQSAAVIHYNGRAK 407
Score = 34.5 bits (69), Expect(3) = 3e-024
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2 / +3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNI 367
WL+I + R W+ +V++ F++ CNI
Sbjct: 411 WLDIAFHELRPLWAKYVDFSDEFIKRCNI 497
>gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV085_F11 5' similar to Arabidopsis thaliana
sequence At2g20807 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 732
Score = 89.5 bits (189), Expect(2) = 4e-024
Identities = 31/49 (63%), Positives = 39/49 (79%)
Frame = +2 / +2
Query: 11 GWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
GWA+GMN+FDL W+K N+T YH WQ+ N +R LWKLGTLP GL+TF+
Sbjct: 452 GWAFGMNVFDLVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFY 598
Score = 41.8 bits (85), Expect(2) = 4e-024
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVN 225
T PLDR WH LGLGY+PNV+
Sbjct: 605 TEPLDRRWHILGLGYDPNVD 664
>gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 5', mRNA sequence
Length = 716
Score = 63.4 bits (132), Expect(3) = 6e-023
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1 / +1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH GLGYNP+++ +IR A V+HFNG +K
Sbjct: 58 TKPLDKSWHVFGLGYNPSISMDEIRNAAVVHFNGFMK 168
Score = 44.6 bits (91), Expect(3) = 6e-023
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+IG+ +YR W+ +V+YD F+Q CN
Sbjct: 172 WLDIGMNQYRDTWTKYVDYDMEFVQMCN 255
Score = 36.8 bits (74), Expect(3) = 6e-023
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2 / +1
Query: 113 LWKLGTLPAGLVTFWNRIRSL 175
LWKLGTLP GL+TF+ + L
Sbjct: 7 LWKLGTLPPGLITFYKTTKPL 69
>gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 3', mRNA sequence
Length = 690
Score = 67.5 bits (141), Expect(3) = 1e-022
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1 / +1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LG GYNP+++ +IR A V+HFNGN+K
Sbjct: 49 TKPLDKSWHVLGFGYNPSISMDEIRNAAVVHFNGNMK 159
Score = 42.8 bits (87), Expect(3) = 1e-022
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2 / +1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+IG+ +YR W+ +V++D F+Q CN
Sbjct: 163 WLDIGMNQYRDTWTKYVDFDMEFVQMCN 246
Score = 33.6 bits (67), Expect(3) = 1e-022
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2 / +1
Query: 116 WKLGTLPAGLVTFWNRIRSL 175
WKLGTLP GL+T++ + L
Sbjct: 1 WKLGTLPPGLITYYKTTKPL 60
>gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_A01_A029 5', mRNA sequence
Length = 802
Score = 101 bits (216), Expect = 4e-021
Identities = 35/51 (68%), Positives = 40/51 (78%)
Frame = +2 / +3
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
ACGWAYGMN F L WR++ TE YH WQ LNENR LWKLGTLP GL+T++
Sbjct: 645 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYY 797
>gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_B06_A029 3', mRNA sequence
Length = 482
Score = 100 bits (214), Expect = 8e-021
Identities = 35/50 (70%), Positives = 39/50 (78%)
Frame = +2 / -2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTF 154
ACGWAYGMN F L WR++ TE YH WQ LNENR LWKLGTLP GL+T+
Sbjct: 151 ACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITY 2
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 364,622,450
Number of Sequences: 355925
Number of extensions: 5113190
Number of successful extensions: 38451
Number of sequences better than 1.0e-020: 28
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9543423165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)