TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR690082.1|DR690082 EST1080171 Normalized pine embryo li... 193 1e-088
gb|DT635986.1|DT635986 EST1150917 Normalized pine embryo li... 193 6e-083
gb|DR695180.1|DR695180 EST1085273 Normalized pine embryo li... 169 5e-082
gb|DT631485.1|DT631485 EST1146416 Normalized pine embryo li... 191 9e-079
gb|BX253385.1|BX253385 BX253385 Pinus pinaster differenciat... 193 3e-069
gb|DT632142.1|DT632142 EST1147073 Normalized pine embryo li... 163 9e-065
gb|DR683488.1|DR683488 EST1073564 Normalized pine embryo li... 191 5e-058
gb|CO367160.1|CO367160 RTK1_32_C08.g1_A029 Roots minus pota... 168 9e-058
gb|BX253531.1|BX253531 BX253531 Pinus pinaster differenciat... 193 1e-048
gb|AI812780.1|AI812780 19A4 Pine Lambda Zap Xylem library P... 154 1e-036
gb|CO367089.1|CO367089 RTK1_32_C08.b1_A029 Roots minus pota... 150 1e-035
gb|DR694586.1|DR694586 EST1084678 Normalized pine embryo li... 145 6e-034
gb|DR120708.1|DR120708 RTMG1_31_A05.g1_A029 Roots minus mag... 95 2e-033
gb|AW888026.1|AW888026 NXNV_129_B03_F Nsf Xylem Normal wood... 125 5e-028
gb|BM903230.1|BM903230 NXLV_081_E03_F NXLV (Nsf Xylem Late ... 116 1e-026
gb|DR684534.1|DR684534 EST1074611 Normalized pine embryo li... 89 1e-026
gb|DR120628.1|DR120628 RTMG1_31_A05.b1_A029 Roots minus mag... 93 4e-023
>gb|DR690082.1|DR690082 EST1080171 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACQ91 3' end, mRNA sequence
Length = 843
Score = 193 bits (417), Expect(3) = 1e-088
Identities = 77/118 (65%), Positives = 96/118 (81%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN+TIY SL AVFSQFGKI+DV+A KTLKH+GQAWVVF++V++A
Sbjct: 109 IPPNMTIYINNLNEKTKLEELKKSLYAVFSQFGKIVDVIALKTLKHRGQAWVVFDEVSAA 288
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHH 469
T AL++MQGFPFYDK MRIQYAKTKSD IAKADGT+VPRE+R+R DE++E+K++ +HH
Sbjct: 289 TNALRQMQGFPFYDKPMRIQYAKTKSDAIAKADGTYVPREKRRRQDERAERKRREQHH 462
Score = 149 bits (320), Expect(3) = 1e-088
Identities = 63/78 (80%), Positives = 66/78 (84%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHE T MMLQ+LFCQY GFKEVRMIEAKPGIAFVEY DE QAT AM LQ
Sbjct: 586 PNNILFVQNLPHEATSMMLQILFCQYQGFKEVRMIEAKPGIAFVEYADEMQATVAMQALQ 765
Query: 776 SFKITKENQMVITYAKK* 829
FKI +N M+ITYAKK*
Sbjct: 766 GFKIIPQNPMLITYAKK* 819
Score = 118 bits (253), Expect(2) = 2e-054
Identities = 53/79 (67%), Positives = 61/79 (77%)
Frame = -2 / -2
Query: 831 HYFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIW 652
+YF AYV+++ F +ILK R MA VA +SS YST AIPGFASIIRTSLKP YWQKSI
Sbjct: 821 NYFLAYVISMGFWGMILKPWRACMATVACISSAYSTNAIPGFASIIRTSLKPWYWQKSIC 642
Query: 651 SIMGVVSCGKFWTNKMLFG 595
SI+ V S G+FWTN MLFG
Sbjct: 641 SIIEVAS*GRFWTNNMLFG 585
Score = 118 bits (252), Expect(2) = 2e-054
Identities = 61/98 (62%), Positives = 64/98 (65%)
Frame = -2 / -2
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GT VPSAFA+ SD V AY ILI LS*KG PCI A VA TSSKTTQA*P CF+VL+A
Sbjct: 401 GT*VPSAFAMASDFVFAYCILIGLS*KGNPCICRSALVAAETSSKTTQA*PRCFRVLRAI 222
Query: 228 TSRIFPNWEKTAVRDXXXXXXXXXXXXXXX*MVTFGGM 115
TS IFPN EKTA RD *MV FGGM
Sbjct: 221 TSTIFPN*EKTAYRDFLSSSNLVFSLRLFM*MVIFGGM 108
Score = 72.5 bits (152), Expect(2) = 2e-026
Identities = 42/85 (49%), Positives = 50/85 (58%)
Frame = -1 / -1
Query: 469 VMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKALHPLQSLSS* 290
+ML L F I S F AISLC I* L IL SH F+IEGK+LH + +S
Sbjct: 462 MMLFPALPFSSLILSPSFFPGDISAISLCNGI*LCLCILYSHWFIIEGKSLHLPECISRS 283
Query: 289 CDIFEDNPSLTFMLQSLESKHIKNF 215
D ++NPSLT MLQS ES +I NF
Sbjct: 282 *DFIKNNPSLTPMLQSFESNNIYNF 208
Score = 70.3 bits (147), Expect(2) = 2e-026
Identities = 30/75 (40%), Positives = 47/75 (62%)
Frame = -1 / -1
Query: 817 ICDDHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGR 638
IC+ H + + E L+ +HG L + I ++ NPRL +H + LE VLAE++L HH
Sbjct: 807 ICNKHGILGNDLETLESLHGYGCLHFICIFNKRNPRLCFNHSDFLETLVLAEKYL*HHRS 628
Query: 637 RLVWQVLDKQDVVWY 593
L+ ++LD+Q VVW+
Sbjct: 627 CLMRKILDEQYVVWW 583
Score = 58.3 bits (121), Expect(3) = 2e-023
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +1 / +3
Query: 313 DAGLSLL*QNYENSICQDQIRYYSKG*WHLCTSRKKKED**KI*KEAEARAS 468
+A +SLL* EN++C+D++R + KG*WHLC K KE *+ *KEA+ S
Sbjct: 306 NARISLL**TNENTVCKDKVRCHCKG*WHLCPQGKTKETR*ES*KEAQGTTS 461
Score = 53.3 bits (110), Expect(3) = 2e-023
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +1 / +3
Query: 595 TKQHLVCPKLATRXXXXXXXXXXXXVPWLQGGSDDRGEAWDCFRGVWRRDPGHCCHEQPS 774
TKQH+V P+ ++ VP QG +D +AWDC + R + + H
Sbjct: 585 TKQHIVRPESSS*GNFYDATDTFLPVPGFQGSPND*SKAWDCVC*ICR*NASNRSHASSP 764
Query: 775 KLQNYKRKPDGHHICEEVMSS 837
+ Q++ K ++IC+E++ S
Sbjct: 765 RFQDHSPKSHAYYICQEIILS 827
Score = 40.9 bits (83), Expect(3) = 2e-023
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1 / +3
Query: 115 HPAERHHLYQQPQREDQARRT*EVPNSRFFPVWENS*CACFQDFEA 252
H ++ HL++Q Q E+Q R +V F +W+N C C Q+ EA
Sbjct: 108 HSSKYDHLHKQSQ*ENQVRGAQKVSVCSFLSIWKNCRCYCSQNSEA 245
Score = 24.0 bits (46), Expect(3) = 1e-088
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2 / +1
Query: 509 AYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNN 604
+YP YGAP L R +PE P N
Sbjct: 496 SYPSGYGAPILGSQMQFPSSRPSLPEAPAPPN 591
>gb|DT635986.1|DT635986 EST1150917 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGM79 3' end, mRNA sequence
Length = 837
Score = 193 bits (417), Expect(3) = 6e-083
Identities = 77/118 (65%), Positives = 96/118 (81%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN+TIY SL AVFSQFGKI+DV+A KTLKH+GQAWVVF++V++A
Sbjct: 117 IPPNMTIYINNLNEKTKLEELKKSLYAVFSQFGKIVDVIALKTLKHRGQAWVVFDEVSAA 296
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHH 469
T AL++MQGFPFYDK MRIQYAKTKSD IAKADGT+VPRE+R+R DE++E+K++ +HH
Sbjct: 297 TNALRQMQGFPFYDKPMRIQYAKTKSDAIAKADGTYVPREKRRRQDERAERKRREQHH 470
Score = 130 bits (278), Expect(3) = 6e-083
Identities = 54/64 (84%), Positives = 55/64 (85%)
Frame = +2 / +3
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHE T MMLQ+LFCQY GFKEVRMIEAKPGIAFVEY DE QAT AM LQ
Sbjct: 594 PNNILFVQNLPHEATSMMLQILFCQYQGFKEVRMIEAKPGIAFVEYADEMQATVAMQALQ 773
Query: 776 SFKI 787
FKI
Sbjct: 774 GFKI 785
Score = 118 bits (252), Expect(2) = 2e-050
Identities = 61/98 (62%), Positives = 64/98 (65%)
Frame = -2 / -3
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GT VPSAFA+ SD V AY ILI LS*KG PCI A VA TSSKTTQA*P CF+VL+A
Sbjct: 409 GT*VPSAFAMASDFVFAYCILIGLS*KGNPCICRSALVAAETSSKTTQA*PRCFRVLRAI 230
Query: 228 TSRIFPNWEKTAVRDXXXXXXXXXXXXXXX*MVTFGGM 115
TS IFPN EKTA RD *MV FGGM
Sbjct: 229 TSTIFPN*EKTAYRDFLSSSNLVFSLRLFM*MVIFGGM 116
Score = 105 bits (223), Expect(2) = 2e-050
Identities = 47/65 (72%), Positives = 51/65 (78%)
Frame = -2 / -3
Query: 789 VILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTN 610
+ILK R MA VA +SS YST AIPGFASIIRTSLKP YWQKSI SI+ V S G+FWTN
Sbjct: 787 MILKPWRACMATVACISSAYSTNAIPGFASIIRTSLKPWYWQKSICSIIEVAS*GRFWTN 608
Query: 609 KMLFG 595
MLFG
Sbjct: 607 NMLFG 593
Score = 72.5 bits (152), Expect(2) = 2e-024
Identities = 42/85 (49%), Positives = 50/85 (58%)
Frame = -1 / -2
Query: 469 VMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKALHPLQSLSS* 290
+ML L F I S F AISLC I* L IL SH F+IEGK+LH + +S
Sbjct: 470 MMLFPALPFSSLILSPSFFPGDISAISLCNGI*LCLCILYSHWFIIEGKSLHLPECISRS 291
Query: 289 CDIFEDNPSLTFMLQSLESKHIKNF 215
D ++NPSLT MLQS ES +I NF
Sbjct: 290 *DFIKNNPSLTPMLQSFESNNIYNF 216
Score = 63.8 bits (133), Expect(2) = 2e-024
Identities = 27/65 (41%), Positives = 42/65 (64%)
Frame = -1 / -2
Query: 787 NFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLVWQVLDKQ 608
+ E L+ +HG L + I ++ NPRL +H + LE VLAE++L HH L+ ++LD+Q
Sbjct: 785 DLETLESLHGYGCLHFICIFNKRNPRLCFNHSDFLETLVLAEKYL*HHRSCLMRKILDEQ 606
Query: 607 DVVWY 593
VVW+
Sbjct: 605 YVVWW 591
Score = 24.0 bits (46), Expect(3) = 6e-083
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2 / +3
Query: 509 AYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNN 604
+YP YGAP L R +PE P N
Sbjct: 504 SYPSGYGAPILGSQMQFPSSRPSLPEAPAPPN 599
>gb|DR695180.1|DR695180 EST1085273 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEL51 3' end, mRNA sequence
Length = 893
Score = 169 bits (364), Expect(2) = 5e-082
Identities = 67/117 (57%), Positives = 89/117 (76%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN TIY SL A+FSQFG+I D++A KT+K +GQAWVVF+++ +A
Sbjct: 165 IPPNQTIYINNLNERVKKEELKKSLYALFSQFGRIADIVALKTVKLRGQAWVVFDEITAA 344
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREH 466
+ AL++MQGFPFYDK MRI Y K+KSD IAKADGT+VPRE+RK+ +EK+EK++K +H
Sbjct: 345 SNALRQMQGFPFYDKPMRIHYGKSKSDAIAKADGTYVPREKRKKQEEKAEKRRKEQH 515
Score = 156 bits (335), Expect(2) = 5e-082
Identities = 69/102 (67%), Positives = 76/102 (74%)
Frame = +2 / +3
Query: 524 YGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIE 703
YGA +Q G+ PN+ILF+QNLPHETT MMLQMLF QYPGFKEVRMIE
Sbjct: 552 YGATAASQSQFQHGKPSSQEPPAPPNSILFIQNLPHETTTMMLQMLFQQYPGFKEVRMIE 731
Query: 704 AKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK* 829
AKPGIAFVEYGDE QA+ AM LQ FKIT +N M+ITYAKK*
Sbjct: 732 AKPGIAFVEYGDEMQASVAMQALQGFKITPQNPMLITYAKK* 857
Score = 118 bits (253), Expect(2) = 8e-044
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = -2 / -2
Query: 846 HCSGAHYFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYW 667
+C +YF AYV++I F VILK *R +A A +SSPYSTKA+PGFASIIRTSLKPGY
Sbjct: 874 YCQLMNYFLAYVISIGFWGVILKP*RACIATDACISSPYSTKAMPGFASIIRTSLKPGYC 695
Query: 666 QKSIWSIMGVVSCGKFWTNKMLFG 595
+I SI+ VVSCG+FW N ML G
Sbjct: 694 WNNICSIIVVVSCGRFWINNMLLG 623
Score = 82.6 bits (174), Expect(2) = 8e-044
Identities = 49/98 (50%), Positives = 53/98 (54%)
Frame = -2 / -2
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GT VPSAFAI SD ILI LS* GKPCI A +A SSKTT A*P F V +A+
Sbjct: 457 GT*VPSAFAIASDFDFP*CILIGLS*NGKPCICRSALLAAVISSKTTHA*PRSFTVFRAT 278
Query: 228 TSRIFPNWEKTAVRDXXXXXXXXXXXXXXX*MVTFGGM 115
S I PN E A RD *+V FGGM
Sbjct: 277 ISAILPN*ENNA*RDFLSSSFLTLSLRLLM*IV*FGGM 164
Score = 69.3 bits (145), Expect(3) = 1e-025
Identities = 34/73 (46%), Positives = 43/73 (58%)
Frame = -1 / -1
Query: 817 ICDDHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGR 638
IC+ H V +ALK +H L +SILH+ N RL L+H LE RVL E+HL HH
Sbjct: 845 ICNKHWVLGSYLKALKSLHSY*CLHFISILHKGNARLCLNHTYFLETRVLLEQHL*HHSG 666
Query: 637 RLVWQVLDKQDVV 599
L+ +LDKQ V
Sbjct: 665 CLMR*ILDKQYAV 627
Score = 65.7 bits (137), Expect(3) = 1e-025
Identities = 34/81 (41%), Positives = 48/81 (59%)
Frame = -1 / -1
Query: 466 MLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKALHPLQSLSS*C 287
ML L L FF L F + ISL Y+I*F L ++ H F+IE +ALH + ++S C
Sbjct: 515 MLFLAPLLSFFFLLLPLFPWHISTISLRYSI*F*LPVMYPHRFIIEWEALHLPECIASSC 336
Query: 286 DIFEDNPSLTFMLQSLESKHI 224
+ ++NP LT L SL+S +I
Sbjct: 335 NFIKNNPCLTTELHSLQSNNI 273
Score = 55.1 bits (114), Expect(3) = 5e-021
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1 / +2
Query: 670 VPWLQGGSDDRGEAWDCFRGVWRRDPGHCCHEQPSKLQNYKRKPDGHHICEEVM 831
+PW QG + D G+AW C GVWR + + S+L + +P+ ++IC+E++
Sbjct: 698 IPWFQGSTYD*GKAWHCLCGVWR*NASISSYAGSSRL*DNSPEPNAYYICQEIV 859
Score = 46.0 bits (94), Expect(3) = 5e-021
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1 / +2
Query: 115 HPAERHHLYQQPQREDQARRT*EVPNSRFFPVWENS*CACFQDFEA 252
H +E ++L+QQ Q E Q RR E+P F +W++S C +D EA
Sbjct: 164 HSSESNNLHQQSQ*ESQKRRAQEIPLCIIFSIWKDSRYCCSEDCEA 301
Score = 43.2 bits (88), Expect(3) = 5e-021
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +1 / +2
Query: 313 DAGLSLL*QNYENSICQDQIRYYSKG*WHLCTSRKKKED**KI*KEAE 456
+AGL +L* E+++ + +IR YS+G*W+LC K++E K *+EA+
Sbjct: 362 NAGLPIL**TDEDTLREVKIRCYSEG*WYLCAKGKEEEARRKS*EEAQ 505
Score = 24.9 bits (48), Expect(3) = 1e-025
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1 / -1
Query: 172 FELDLLVEVVDIDGDVRRD 116
F D L+E+VD+D +RR+
Sbjct: 221 FFFDSLIEIVDVDCLIRRN 165
>gb|DT631485.1|DT631485 EST1146416 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF929 3' end, mRNA sequence
Length = 853
Score = 191 bits (412), Expect(4) = 9e-079
Identities = 76/118 (64%), Positives = 96/118 (81%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN+TIY SL AVFSQFGKI+DV+A KTLKH+GQAWVVF++V++A
Sbjct: 149 IPPNMTIYINNLNEKTKLEELKKSLYAVFSQFGKIVDVIALKTLKHRGQAWVVFDEVSAA 328
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHH 469
T AL++MQGFPFYDK MRIQ+AKTKSD IAKADGT+VPRE+R+R DE++E+K++ +HH
Sbjct: 329 TNALRQMQGFPFYDKPMRIQHAKTKSDAIAKADGTYVPREKRRRQDERAERKRREQHH 502
Score = 114 bits (243), Expect(2) = 2e-045
Identities = 60/98 (61%), Positives = 63/98 (64%)
Frame = -2 / -2
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GT VPSAFA+ SD V A ILI LS*KG PCI A VA TSSKTTQA*P CF+VL+A
Sbjct: 441 GT*VPSAFAMASDFVFACCILIGLS*KGNPCICRSALVAAETSSKTTQA*PRCFRVLRAI 262
Query: 228 TSRIFPNWEKTAVRDXXXXXXXXXXXXXXX*MVTFGGM 115
TS IFPN EKTA RD *MV FGGM
Sbjct: 261 TSTIFPN*EKTAYRDFLSSSNLVFSLRLFM*MVIFGGM 148
Score = 110 bits (234), Expect(4) = 9e-079
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = +2 / +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDE 742
PNNILFVQNLPHE T MMLQ+LFCQY GFKEVRMIEAKPGIAFVEY DE
Sbjct: 626 PNNILFVQNLPHEATSMMLQILFCQYQGFKEVRMIEAKPGIAFVEYADE 772
Score = 92.7 bits (196), Expect(2) = 2e-045
Identities = 39/49 (79%), Positives = 41/49 (83%)
Frame = -2 / -2
Query: 741 SSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNKMLFG 595
SS YST AIPGFASIIRTSLKP YWQKSI SI+ V S G+FWTN MLFG
Sbjct: 771 SSAYSTNAIPGFASIIRTSLKPWYWQKSICSIIEVAS*GRFWTNNMLFG 625
Score = 71.2 bits (149), Expect(2) = 9e-022
Identities = 41/85 (48%), Positives = 50/85 (58%)
Frame = -1 / -1
Query: 469 VMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKALHPLQSLSS* 290
+ML L F I S F AISLC I* L +L SH F+IEGK+LH + +S
Sbjct: 502 MMLFPALPFSSLILSPSFFPGDISAISLCNGI*LCLCMLYSHWFIIEGKSLHLPECISRS 323
Query: 289 CDIFEDNPSLTFMLQSLESKHIKNF 215
D ++NPSLT MLQS ES +I NF
Sbjct: 322 *DFIKNNPSLTPMLQSFESNNIYNF 248
Score = 56.1 bits (116), Expect(2) = 9e-022
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = -1 / -1
Query: 748 LGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLVWQVLDKQDVVWY 593
L + I ++ NPRL +H + LE VLAE++L HH L+ ++LD+Q VVW+
Sbjct: 778 LAFICIFNKRNPRLCFNHSDFLETLVLAEKYL*HHRSCLMRKILDEQYVVWW 623
Score = 26.7 bits (52), Expect(4) = 9e-079
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2 / +1
Query: 746 QATAAMNNLQSFKITKENQMVI 811
QAT AM LQ FKI +N ++
Sbjct: 775 QATVAMQALQGFKIIPQNPCLL 840
Score = 24.0 bits (46), Expect(4) = 9e-079
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2 / +2
Query: 509 AYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNN 604
+YP YGAP L R +PE P N
Sbjct: 536 SYPSGYGAPILGSQMQFPSSRPSLPEAPAPPN 631
>gb|BX253385.1|BX253385 BX253385 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP082G09 similar to U1 SMALL NUCLEAR
RIBONUCLEOPROTEIN A, mRNA sequence
Length = 669
Score = 193 bits (417), Expect(3) = 3e-069
Identities = 77/118 (65%), Positives = 96/118 (81%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN+TIY SL AVFSQFGKI+DV+A KTLKH+GQAWVVF++V++A
Sbjct: 82 IPPNMTIYINNLNEKTKLEELKKSLYAVFSQFGKIVDVIALKTLKHRGQAWVVFDEVSAA 261
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHH 469
T AL++MQGFPFYDK MRIQYAKTKSD IAKADGT+VPRE+R+R DE++E+K++ +HH
Sbjct: 262 TNALQKMQGFPFYDKRMRIQYAKTKSDAIAKADGTYVPREKRRRQDERAERKRREQHH 435
Score = 120 bits (257), Expect(2) = 4e-040
Identities = 61/98 (62%), Positives = 65/98 (66%)
Frame = -2 / -2
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GT VPSAFA+ SD V AY ILI LS*KG PCI + A VA TSSKTTQA*P CF+VL+A
Sbjct: 374 GT*VPSAFAMASDFVFAYCILIRLS*KGNPCIFWSALVAAETSSKTTQA*PRCFRVLRAI 195
Query: 228 TSRIFPNWEKTAVRDXXXXXXXXXXXXXXX*MVTFGGM 115
TS IFPN EKTA RD *MV FGGM
Sbjct: 194 TSTIFPN*EKTAYRDFLSSSNLVFSLRLFM*MVIFGGM 81
Score = 84.5 bits (178), Expect(3) = 3e-069
Identities = 34/37 (91%), Positives = 35/37 (94%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEA 706
PNNILFVQNLPHETT MMLQMLFCQY GF+EVRMIEA
Sbjct: 559 PNNILFVQNLPHETTSMMLQMLFCQYLGFQEVRMIEA 669
Score = 78.5 bits (165), Expect(2) = 5e-021
Identities = 44/85 (51%), Positives = 52/85 (61%)
Frame = -1 / -1
Query: 469 VMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKALHPLQSLSS* 290
+ML L F I S F AISLC I* L IL SHSF+IEGK+LH L+ +S
Sbjct: 435 MMLFPALPFSSLILSPSFFPGDISAISLCNGI*LCLCILYSHSFIIEGKSLHFLECISRS 256
Query: 289 CDIFEDNPSLTFMLQSLESKHIKNF 215
D ++NPSLT MLQS ES +I NF
Sbjct: 255 *DFIKNNPSLTPMLQSFESNNIYNF 181
Score = 68.0 bits (142), Expect(2) = 4e-040
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = -2 / -2
Query: 705 ASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNKMLFG 595
ASIIRTS KP YWQKSI SI+ VVS G+FWTN MLFG
Sbjct: 668 ASIIRTS*KPRYWQKSICSIIEVVS*GRFWTNNMLFG 558
Score = 46.0 bits (94), Expect(2) = 5e-021
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = -1 / -1
Query: 700 DHPNLLEARVLAEEHLEHHGRRLVWQVLDKQDVVWY 593
+H + L+ VLAEEHL HH L+ ++LD+Q VVW+
Sbjct: 663 NHSDFLKTEVLAEEHL*HHRSCLMRKILDEQYVVWW 556
Score = 24.0 bits (46), Expect(3) = 3e-069
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2 / +1
Query: 509 AYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNN 604
+YP YGAP L R +PE P N
Sbjct: 469 SYPSGYGAPILGSQMQFPSSRPSLPEAPAPPN 564
>gb|DT632142.1|DT632142 EST1147073 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFG88 3' end, mRNA sequence
Length = 860
Score = 163 bits (350), Expect(2) = 9e-065
Identities = 65/117 (55%), Positives = 87/117 (74%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN TIY SL A+FSQFG+ D++A KT+K +GQAWVVF+++ +A
Sbjct: 265 IPPNQTIYINNLNERVKKEELKKSLYALFSQFGRTADIVALKTVKLRGQAWVVFDEITAA 444
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREH 466
+ AL++MQGFPFYDK MRI Y K+KSD IAKA GT+VPRE+RK+ +EK+EK++K +H
Sbjct: 445 SNALRQMQGFPFYDKPMRIHYGKSKSDAIAKAVGTYVPREKRKKQEEKAEKRRKEQH 615
Score = 105 bits (223), Expect(2) = 9e-065
Identities = 46/69 (66%), Positives = 50/69 (72%)
Frame = +2 / +1
Query: 524 YGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIE 703
YGA +Q G+ PN+ILF+QNLPHETT MMLQMLF QYPGFKEVRMIE
Sbjct: 652 YGATAASQSQFQHGKPSSQEPPAPPNSILFIQNLPHETTTMMLQMLFQQYPGFKEVRMIE 831
Query: 704 AKPGIAFVE 730
AKPGIAFVE
Sbjct: 832 AKPGIAFVE 858
Score = 83.1 bits (175), Expect(2) = 1e-032
Identities = 34/46 (73%), Positives = 38/46 (82%)
Frame = -2 / -1
Query: 732 YSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNKMLFG 595
YSTKA+PGFASIIRTSLKPGY +I SI+ VVSCG+FW N ML G
Sbjct: 860 YSTKAMPGFASIIRTSLKPGYCWNNICSIIVVVSCGRFWINNMLLG 723
Score = 80.8 bits (170), Expect(2) = 1e-032
Identities = 47/98 (47%), Positives = 53/98 (54%)
Frame = -2 / -1
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GT VP+AFAI SD ILI LS* GKPCI A +A SSKTT A*P F V +A+
Sbjct: 557 GT*VPTAFAIASDFDFP*CILIGLS*NGKPCICRSALLAAVISSKTTHA*PRSFTVFRAT 378
Query: 228 TSRIFPNWEKTAVRDXXXXXXXXXXXXXXX*MVTFGGM 115
S + PN E A RD *+V FGGM
Sbjct: 377 ISAVLPN*ENNA*RDFLSSSFLTLSLRLLM*IV*FGGM 264
>gb|DR683488.1|DR683488 EST1073564 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAH80 3' end, mRNA sequence
Length = 693
Score = 191 bits (412), Expect(3) = 5e-058
Identities = 76/118 (64%), Positives = 96/118 (81%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN+TIY SL AVFSQFGKI+DV+A KTLKH+GQAWVVF++V++A
Sbjct: 149 IPPNMTIYINNLNEKTKLEELKKSLYAVFSQFGKIVDVIALKTLKHRGQAWVVFDEVSAA 328
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHH 469
T AL++MQGFPFYDK MRIQ+AKTKSD IAKADGT+VPRE+R+R DE++E+K++ +HH
Sbjct: 329 TNALRQMQGFPFYDKPMRIQHAKTKSDAIAKADGTYVPREKRRRQDERAERKRREQHH 502
Score = 114 bits (243), Expect(2) = 1e-029
Identities = 60/98 (61%), Positives = 63/98 (64%)
Frame = -2 / -1
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GT VPSAFA+ SD V A ILI LS*KG PCI A VA TSSKTTQA*P CF+VL+A
Sbjct: 441 GT*VPSAFAMASDFVFACCILIGLS*KGNPCICRSALVAAETSSKTTQA*PRCFRVLRAI 262
Query: 228 TSRIFPNWEKTAVRDXXXXXXXXXXXXXXX*MVTFGGM 115
TS IFPN EKTA RD *MV FGGM
Sbjct: 261 TSTIFPN*EKTAYRDFLSSSNLVFSLRLFM*MVIFGGM 148
Score = 48.7 bits (100), Expect(3) = 5e-058
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +2 / +2
Query: 596 PNNILFVQNLPHETTPMMLQML 661
PNNILFVQNLPHE T MMLQ+L
Sbjct: 626 PNNILFVQNLPHEATSMMLQIL 691
Score = 39.1 bits (79), Expect(2) = 1e-029
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -2 / -1
Query: 663 KSIWSIMGVVSCGKFWTNKMLFG 595
KSI SI+ V S G+FWTN MLFG
Sbjct: 693 KSICSIIEVAS*GRFWTNNMLFG 625
Score = 24.0 bits (46), Expect(3) = 5e-058
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2 / +2
Query: 509 AYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNN 604
+YP YGAP L R +PE P N
Sbjct: 536 SYPSGYGAPILGSQMQFPSSRPSLPEAPAPPN 631
>gb|CO367160.1|CO367160 RTK1_32_C08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_C08_A029 5', mRNA sequence
Length = 792
Score = 168 bits (362), Expect(2) = 9e-058
Identities = 67/117 (57%), Positives = 88/117 (75%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN TIY SL A+FSQFG+I D++A KT K +GQAWVVF+++ +A
Sbjct: 234 IPPNQTIYINNLNERVKKEELKKSLYALFSQFGRIADIVALKTAKLRGQAWVVFDEITAA 413
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREH 466
+ AL++MQGFPFYDK MRI Y K+KSD IAKADGT+VPRE+RK+ +EK+EK++K +H
Sbjct: 414 SNALRQMQGFPFYDKPMRIHYGKSKSDAIAKADGTYVPREKRKKQEEKAEKRRKEQH 584
Score = 82.6 bits (174), Expect(2) = 6e-025
Identities = 49/98 (50%), Positives = 53/98 (54%)
Frame = -2 / -3
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GT VPSAFAI SD ILI LS* GKPCI A +A SSKTT A*P F V +A+
Sbjct: 526 GT*VPSAFAIASDFDFP*CILIGLS*NGKPCICRSALLAAVISSKTTHA*PRSFAVFRAT 347
Query: 228 TSRIFPNWEKTAVRDXXXXXXXXXXXXXXX*MVTFGGM 115
S I PN E A RD *+V FGGM
Sbjct: 346 ISAILPN*ENNA*RDFLSSSFLTLSLRLLM*IV*FGGM 233
Score = 76.2 bits (160), Expect(2) = 9e-058
Identities = 33/57 (57%), Positives = 37/57 (64%)
Frame = +2 / +3
Query: 524 YGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVR 694
YG +Q G+ PN+ILF+QNLPHETT MMLQMLF QYPGFKEVR
Sbjct: 621 YGTTAASQSQFQHGKPSSQEPPAPPNSILFIQNLPHETTTMMLQMLFQQYPGFKEVR 791
Score = 55.1 bits (114), Expect(2) = 6e-025
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = -2 / -3
Query: 693 RTSLKPGYWQKSIWSIMGVVSCGKFWTNKMLFG 595
RTSLKPGY +I SI+ VVSCG+FW N ML G
Sbjct: 790 RTSLKPGYCWNNICSIIVVVSCGRFWINNMLLG 692
>gb|BX253531.1|BX253531 BX253531 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP084G12 similar to U1 SMALL NUCLEAR
RIBONUCLEOPROTEIN A, mRNA sequence
Length = 528
Score = 193 bits (417), Expect = 1e-048
Identities = 77/118 (65%), Positives = 96/118 (81%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN+TIY SL AVFSQFGKI+DV+A KTLKH+GQAWVVF++V++A
Sbjct: 82 IPPNMTIYINNLNEKTKLEELKKSLYAVFSQFGKIVDVIALKTLKHRGQAWVVFDEVSAA 261
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHH 469
T AL++MQGFPFYDK MRIQYAKTKSD IAKADGT+VPRE+R+R DE++E+K++ +HH
Sbjct: 262 TNALQKMQGFPFYDKRMRIQYAKTKSDAIAKADGTYVPREKRRRQDERAERKRREQHH 435
Score = 120 bits (257), Expect = 2e-026
Identities = 61/98 (62%), Positives = 65/98 (66%)
Frame = -2 / -2
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GT VPSAFA+ SD V AY ILI LS*KG PCI + A VA TSSKTTQA*P CF+VL+A
Sbjct: 374 GT*VPSAFAMASDFVFAYCILIRLS*KGNPCIFWSALVAAETSSKTTQA*PRCFRVLRAI 195
Query: 228 TSRIFPNWEKTAVRDXXXXXXXXXXXXXXX*MVTFGGM 115
TS IFPN EKTA RD *MV FGGM
Sbjct: 194 TSTIFPN*EKTAYRDFLSSSNLVFSLRLFM*MVIFGGM 81
>gb|AI812780.1|AI812780 19A4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 474
Score = 154 bits (331), Expect = 1e-036
Identities = 62/108 (57%), Positives = 81/108 (75%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN TIY SL A+FSQFG+I D++A KT+K +GQAWVVF+++ +A
Sbjct: 141 IPPNQTIYINNLNERVKKEELKKSLYALFSQFGRIADIVALKTVKLRGQAWVVFDEITAA 320
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEK 439
+ AL++MQGFPFYDK +RI Y K+KSD IAKADGT+VPRE+RK+ +EK
Sbjct: 321 SNALRQMQGFPFYDKPIRIHYGKSKSDAIAKADGTYVPREKRKKQEEK 464
>gb|CO367089.1|CO367089 RTK1_32_C08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_C08_A029 3', mRNA sequence
Length = 728
Score = 150 bits (323), Expect = 1e-035
Identities = 63/78 (80%), Positives = 68/78 (87%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN+ILF+QNLPHETT MMLQMLF QYPGFKEVRMIEAKPGIAFVEYGDE QA+ M LQ
Sbjct: 58 PNSILFIQNLPHETTTMMLQMLFQQYPGFKEVRMIEAKPGIAFVEYGDEMQASVVMQALQ 237
Query: 776 SFKITKENQMVITYAKK* 829
FKIT +N M+ITYAKK*
Sbjct: 238 GFKITPQNPMLITYAKK* 291
Score = 116 bits (249), Expect = 2e-025
Identities = 52/84 (61%), Positives = 62/84 (73%)
Frame = -2 / -1
Query: 846 HCSGAHYFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYW 667
+C +YF AYV++I F VILK *R + A +SSPYSTKA+PGFASIIRTSLKPGY
Sbjct: 308 YCQLMNYFLAYVISIGFWGVILKP*RACITTDACISSPYSTKAMPGFASIIRTSLKPGYC 129
Query: 666 QKSIWSIMGVVSCGKFWTNKMLFG 595
+I SI+ VVSCG+FW N ML G
Sbjct: 128 WNNICSIIVVVSCGRFWINNMLLG 57
>gb|DR694586.1|DR694586 EST1084678 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEE37 3' end, mRNA sequence
Length = 823
Score = 145 bits (311), Expect = 6e-034
Identities = 62/78 (79%), Positives = 65/78 (83%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHE T MMLQ+LFCQY GFKEV MIEAKPGIAFVEY DE QAT AM LQ
Sbjct: 40 PNNILFVQNLPHEATSMMLQILFCQYQGFKEV*MIEAKPGIAFVEYADEMQATVAMQALQ 219
Query: 776 SFKITKENQMVITYAKK* 829
FKI +N M+ITYAKK*
Sbjct: 220 GFKIIPQNPMLITYAKK* 273
Score = 116 bits (249), Expect = 2e-025
Identities = 52/79 (65%), Positives = 61/79 (77%)
Frame = -2 / -3
Query: 831 HYFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIW 652
+YF AYV+++ F +ILK R MA VA +SS YST AIPGFASII+TSLKP YWQKSI
Sbjct: 275 NYFLAYVISMGFWGMILKPWRACMATVACISSAYSTNAIPGFASIIQTSLKPWYWQKSIC 96
Query: 651 SIMGVVSCGKFWTNKMLFG 595
SI+ V S G+FWTN MLFG
Sbjct: 95 SIIEVAS*GRFWTNNMLFG 39
>gb|DR120708.1|DR120708 RTMG1_31_A05.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_31_A05_A029 5', mRNA sequence
Length = 867
Score = 95.5 bits (202), Expect(2) = 2e-033
Identities = 42/85 (49%), Positives = 55/85 (64%)
Frame = +2 / +2
Query: 575 MMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQAT 754
M E + PN ILF+QNLP T L LF QYP EVR++ +K IAFVEY DE AT
Sbjct: 515 MPDEYLPPNKILFLQNLPESVTKDQLNALFSQYPNLHEVRLVPSKKDIAFVEYLDEGSAT 694
Query: 755 AAMNNLQSFKITKENQMVITYAKK* 829
A + L ++K+ EN++ IT+A+K*
Sbjct: 695 VAKDALHNYKLDGENKIKITFARK* 769
Score = 71.2 bits (149), Expect(2) = 2e-033
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +2 / +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK 364
SL +F +G++LDV+A L+ GQA+V FE A +A K ++GFP Y K ++I +A+
Sbjct: 149 SLRGLFKSYGEVLDVVAHNNLRMCGQAFVSFESADIAKKAAKEVRGFPLYSKPIQISFAR 328
Query: 365 TKSDII 382
T+SD +
Sbjct: 329 TRSDAV 346
>gb|AW888026.1|AW888026 NXNV_129_B03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_129_B03 5' similar to Arabidopsis thaliana
sequence At1g06960 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 348
Score = 125 bits (268), Expect = 5e-028
Identities = 55/89 (61%), Positives = 65/89 (73%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN+TIY SL AVFSQFGKI+DV+A KTLKH+G WVVF++V++A
Sbjct: 82 IPPNMTIYINNLNEKTKLXXLKKSLYAVFSQFGKIVDVIALKTLKHRGXXWVVFDEVSAA 261
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDII 382
AL++M PFYDK MRIQYAKTKSD I
Sbjct: 262 XNALRQMXXXPFYDKPMRIQYAKTKSDAI 348
>gb|BM903230.1|BM903230 NXLV_081_E03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_081_E03 5' similar to Arabidopsis thaliana
sequence At2g47580 small nuclear ribonucleoprotein U1A
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 321
Score = 116 bits (249), Expect(2) = 1e-026
Identities = 48/59 (81%), Positives = 50/59 (84%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNL 772
PNNILF+QNLPHE T MMLQ+LFCQY FKEVRMIEAKPGIAFVEY DE QAT AM L
Sbjct: 127 PNNILFIQNLPHEATSMMLQILFCQYXXFKEVRMIEAKPGIAFVEYADEMQATVAMQAL 303
Score = 24.0 bits (46), Expect(2) = 1e-026
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2 / +1
Query: 509 AYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNN 604
+YP YGAP L R +PE P N
Sbjct: 37 SYPSGYGAPILGSQMQFPSSRPSLPEAPTPPN 132
>gb|DR684534.1|DR684534 EST1074611 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAT80 3' end, mRNA sequence
Length = 475
Score = 89.0 bits (188), Expect(3) = 1e-026
Identities = 34/51 (66%), Positives = 44/51 (86%)
Frame = +2 / +2
Query: 272 VFEDVASATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRK 424
VF+++ +A+ AL++MQGFPFYDK MRI Y K+KSD IAKA GT+VPRE+RK
Sbjct: 323 VFDEITAASNALRQMQGFPFYDKPMRIHYGKSKSDAIAKAVGTYVPREKRK 475
Score = 39.6 bits (80), Expect(3) = 1e-026
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2 / +1
Query: 200 FSQFGKILDVLAFKTLKHKGQAWVVF 277
F FG+ D++A KT+K +GQAWV F
Sbjct: 250 FLNFGRTADIVALKTVKLRGQAWVCF 327
Score = 29.5 bits (58), Expect(3) = 1e-026
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGK 217
IPPN TIY SL A+FSQF K
Sbjct: 165 IPPNQTIYINNLNERVKKEELKKSLYALFSQFWK 266
>gb|DR120628.1|DR120628 RTMG1_31_A05.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_31_A05_A029 3', mRNA sequence
Length = 668
Score = 92.7 bits (196), Expect(2) = 4e-023
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = +2 / +1
Query: 575 MMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQAT 754
M E + PN ILF+QNLP T L LF QYP EVR++ +K IAFVEY DE AT
Sbjct: 271 MPEEYLPPNKILFLQNLPESVTKDQLNALFSQYPNLHEVRLVPSKKDIAFVEYLDEGSAT 450
Query: 755 AAMNNLQSFKITKENQMVITYAKK* 829
A + L ++K+ EN++ I +A+K*
Sbjct: 451 VAKDALHNYKLDGENKIKIPFARK* 525
Score = 38.6 bits (78), Expect(2) = 4e-023
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2 / +1
Query: 293 ATEALKRMQGFPFYDKTMRIQYAKTKSDII 382
A +A K ++GFP Y K ++I +A+T+SD +
Sbjct: 13 AKKAAKEVRGFPLYSKPIQISFARTRSDAV 102
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 499,673,170
Number of Sequences: 355925
Number of extensions: 7121947
Number of successful extensions: 38541
Number of sequences better than 1.0e-020: 19
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 16657694920
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)