TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969865.2.1
(675 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA ... 214 6e-055
gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciat... 214 6e-055
gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clon... 214 6e-055
gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus ad... 214 6e-055
gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus ad... 214 6e-055
gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch... 214 6e-055
gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch... 214 6e-055
gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch... 212 2e-054
gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone lib... 210 6e-054
gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root w... 200 9e-051
gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control ... 113 5e-046
gb|AL749842.1|AL749842 AL749842 AS Pinus pinaster cDNA clon... 144 8e-034
gb|BF778981.1|BF778981 NXSI_091_F11_F NXSI (Nsf Xylem Side ... 143 1e-033
gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus adde... 104 4e-033
gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus adde... 104 4e-033
gb|AL749805.1|AL749805 AL749805 AS Pinus pinaster cDNA clon... 73 1e-026
gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Ve... 116 1e-025
gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Ver... 116 1e-025
>gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA clone 2N8E, mRNA sequence
Length = 719
Score = 214 bits (461), Expect = 6e-055
Identities = 89/93 (95%), Positives = 92/93 (98%)
Frame = +3 / +1
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 136 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 315
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 316 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 414
Score = 175 bits (377), Expect = 2e-043
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -3 / -1
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKART 224
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TMLQC S A T
Sbjct: 410 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 231
Query: 223 RPSNFLLFRQLIRTWVLFLTLIMSTERGPXXXXXXXXXXXXXSAMG 86
RP +FLLF QLIRT VLF TLIM TERGP S++G
Sbjct: 230 RPRSFLLFLQLIRTCVLFFTLIMRTERGPVLNSSSSDFSGKSSSIG 93
Score = 116 bits (247), Expect = 2e-025
Identities = 50/96 (52%), Positives = 70/96 (72%)
Frame = -2 / -3
Query: 404 SFRVPEDNDDRIPTEEHLAYEPVLVHRESLLLAFTGLRYLGPHLPNVLKNHVAVPIEGSH 225
S + ++N+DR+ T++H A EP+LV R S LLAFT L L PH ++L+NHVAVPI+ S+
Sbjct: 411 SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLCPHFFDILQNHVAVPIKCSN 232
Query: 224 ATKQLLVVPAVDKNLGIILDAHHEHRERTGAELLFL 117
+ K+L VV A+D+NL I+ AHHE+R+RT E L L
Sbjct: 231 SPKKLFVVSAIDQNLCIVFHAHHENRKRTSIEFLLL 124
>gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP001F10, mRNA sequence
Length = 665
Score = 214 bits (461), Expect = 6e-055
Identities = 89/93 (95%), Positives = 92/93 (98%)
Frame = +3 / -1
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 614 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 435
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 434 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 336
Score = 172 bits (370), Expect = 2e-042
Identities = 75/89 (84%), Positives = 78/89 (87%)
Frame = -3 / +1
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKART 224
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TMLQC S A T
Sbjct: 340 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 519
Query: 223 RPSNFLLFRQLIRTWVLFLTLIMSTERGP 137
RP +FLLF QLIRT VLF TLIM T RGP
Sbjct: 520 RPRSFLLFLQLIRTCVLFFTLIMRTXRGP 606
Score = 113 bits (242), Expect = 1e-024
Identities = 49/96 (51%), Positives = 68/96 (70%)
Frame = -2 / +3
Query: 404 SFRVPEDNDDRIPTEEHLAYEPVLVHRESLLLAFTGLRYLGPHLPNVLKNHVAVPIEGSH 225
S + ++N+DR+ T++H A EP+LV R S LLAFT L L PH ++L+NHVAVPI+ S+
Sbjct: 339 SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLRPHFFDILQNHVAVPIKCSN 518
Query: 224 ATKQLLVVPAVDKNLGIILDAHHEHRERTGAELLFL 117
+ K+L VV A+D+NL I+ HHE+R RT E L L
Sbjct: 519 SPKKLFVVSAIDQNLCIVFHTHHENRXRTSIEFLLL 626
>gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clone RS11G12, mRNA sequence
Length = 608
Score = 214 bits (461), Expect = 6e-055
Identities = 89/93 (95%), Positives = 92/93 (98%)
Frame = +3 / +2
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 152 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 331
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 332 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 430
Score = 175 bits (377), Expect = 2e-043
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -3 / -3
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKART 224
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TMLQC S A T
Sbjct: 426 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 247
Query: 223 RPSNFLLFRQLIRTWVLFLTLIMSTERGPXXXXXXXXXXXXXSAMG 86
RP +FLLF QLIRT VLF TLIM TERGP S++G
Sbjct: 246 RPRSFLLFLQLIRTCVLFFTLIMRTERGPVLNSSSSDFSGKSSSIG 109
Score = 114 bits (244), Expect = 5e-025
Identities = 49/96 (51%), Positives = 69/96 (71%)
Frame = -2 / -2
Query: 404 SFRVPEDNDDRIPTEEHLAYEPVLVHRESLLLAFTGLRYLGPHLPNVLKNHVAVPIEGSH 225
S + ++N+DR+ T++H A EP+LV R S LLAFT L L PH ++L+NHVAVPI+ S+
Sbjct: 427 SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLRPHFFDILQNHVAVPIKCSN 248
Query: 224 ATKQLLVVPAVDKNLGIILDAHHEHRERTGAELLFL 117
+ K+L VV A+D+NL I+ HHE+R+RT E L L
Sbjct: 247 SPKKLFVVSAIDQNLCIVFHTHHENRKRTSIEFLLL 140
>gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 3', mRNA sequence
Length = 723
Score = 214 bits (461), Expect = 6e-055
Identities = 89/93 (95%), Positives = 92/93 (98%)
Frame = +3 / +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 135 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 314
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 315 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 413
Score = 175 bits (377), Expect = 2e-043
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -3 / -3
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKART 224
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TMLQC S A T
Sbjct: 409 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 230
Query: 223 RPSNFLLFRQLIRTWVLFLTLIMSTERGPXXXXXXXXXXXXXSAMG 86
RP +FLLF QLIRT VLF TLIM TERGP S++G
Sbjct: 229 RPRSFLLFLQLIRTCVLFFTLIMRTERGPVLNSSSSDFSGKSSSIG 92
Score = 114 bits (243), Expect = 8e-025
Identities = 49/96 (51%), Positives = 69/96 (71%)
Frame = -2 / -2
Query: 404 SFRVPEDNDDRIPTEEHLAYEPVLVHRESLLLAFTGLRYLGPHLPNVLKNHVAVPIEGSH 225
S + ++N+DR+ T++H A EP+LV R S LLAFT L L PH ++L+NHVAVPI+ S+
Sbjct: 410 SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLCPHFFDILQNHVAVPIKCSN 231
Query: 224 ATKQLLVVPAVDKNLGIILDAHHEHRERTGAELLFL 117
+ K+L VV A+D+NL I+ HHE+R+RT E L L
Sbjct: 230 SPKKLFVVSAIDQNLCIVFHTHHENRKRTSIEFLLL 123
>gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 5', mRNA sequence
Length = 712
Score = 214 bits (461), Expect = 6e-055
Identities = 89/93 (95%), Positives = 92/93 (98%)
Frame = +3 / +2
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 104 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 283
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 284 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 382
Score = 175 bits (377), Expect = 2e-043
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -3 / -2
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKART 224
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TMLQC S A T
Sbjct: 378 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 199
Query: 223 RPSNFLLFRQLIRTWVLFLTLIMSTERGPXXXXXXXXXXXXXSAMG 86
RP +FLLF QLIRT VLF TLIM TERGP S++G
Sbjct: 198 RPRSFLLFLQLIRTCVLFFTLIMRTERGPVLNSSSSDFSGKSSSIG 61
Score = 114 bits (243), Expect = 8e-025
Identities = 49/96 (51%), Positives = 69/96 (71%)
Frame = -2 / -1
Query: 404 SFRVPEDNDDRIPTEEHLAYEPVLVHRESLLLAFTGLRYLGPHLPNVLKNHVAVPIEGSH 225
S + ++N+DR+ T++H A EP+LV R S LLAFT L L PH ++L+NHVAVPI+ S+
Sbjct: 379 SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLCPHFFDILQNHVAVPIKCSN 200
Query: 224 ATKQLLVVPAVDKNLGIILDAHHEHRERTGAELLFL 117
+ K+L VV A+D+NL I+ HHE+R+RT E L L
Sbjct: 199 SPKKLFVVSAIDQNLCIVFHTHHENRKRTSIEFLLL 92
>gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 3', mRNA sequence
Length = 853
Score = 214 bits (461), Expect = 6e-055
Identities = 89/93 (95%), Positives = 92/93 (98%)
Frame = +3 / -3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 446 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 267
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 266 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 168
Score = 175 bits (377), Expect = 2e-043
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -3 / +1
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKART 224
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TMLQC S A T
Sbjct: 172 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 351
Query: 223 RPSNFLLFRQLIRTWVLFLTLIMSTERGPXXXXXXXXXXXXXSAMG 86
RP +FLLF QLIRT VLF TLIM TERGP S++G
Sbjct: 352 RPRSFLLFLQLIRTCVLFFTLIMRTERGPVLNSSSSDFSGKSSSIG 489
Score = 116 bits (249), Expect = 1e-025
Identities = 50/96 (52%), Positives = 71/96 (73%)
Frame = -2 / +3
Query: 404 SFRVPEDNDDRIPTEEHLAYEPVLVHRESLLLAFTGLRYLGPHLPNVLKNHVAVPIEGSH 225
S + ++N+DR+ T++H A EP+LV+R S LLAFT L L PH ++L+NHVAVPI+ S+
Sbjct: 171 SLWISKNNNDRVSTKKHFADEPILVNRLSFLLAFTCLWNLCPHFFDILQNHVAVPIKCSN 350
Query: 224 ATKQLLVVPAVDKNLGIILDAHHEHRERTGAELLFL 117
+ K+L VV A+D+NL I+ AHHE+R+RT E L L
Sbjct: 351 SPKKLFVVSAIDQNLCIVFHAHHENRKRTSIEFLLL 458
>gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 5', mRNA sequence
Length = 913
Score = 214 bits (461), Expect = 6e-055
Identities = 89/93 (95%), Positives = 92/93 (98%)
Frame = +3 / -1
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 535 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 356
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 355 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 257
Score = 175 bits (377), Expect = 2e-043
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -3 / +3
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKART 224
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TMLQC S A T
Sbjct: 261 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 440
Query: 223 RPSNFLLFRQLIRTWVLFLTLIMSTERGPXXXXXXXXXXXXXSAMG 86
RP +FLLF QLIRT VLF TLIM TERGP S++G
Sbjct: 441 RPRSFLLFLQLIRTCVLFFTLIMRTERGPVLNSSSSDFSGKSSSIG 578
Score = 116 bits (249), Expect = 1e-025
Identities = 50/96 (52%), Positives = 71/96 (73%)
Frame = -2 / +2
Query: 404 SFRVPEDNDDRIPTEEHLAYEPVLVHRESLLLAFTGLRYLGPHLPNVLKNHVAVPIEGSH 225
S + ++N+DR+ T++H A EP+LV+R S LLAFT L L PH ++L+NHVAVPI+ S+
Sbjct: 260 SLWISKNNNDRVSTKKHFADEPILVNRLSFLLAFTCLWNLCPHFFDILQNHVAVPIKCSN 439
Query: 224 ATKQLLVVPAVDKNLGIILDAHHEHRERTGAELLFL 117
+ K+L VV A+D+NL I+ AHHE+R+RT E L L
Sbjct: 440 SPKKLFVVSAIDQNLCIVFHAHHENRKRTSIEFLLL 547
>gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_A11_A034 3', mRNA sequence
Length = 811
Score = 212 bits (457), Expect = 2e-054
Identities = 88/93 (94%), Positives = 91/93 (97%)
Frame = +3 / +2
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 224 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 403
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
KKKA PVNKDRFISKMFLRGDSVIIV RNPK*+
Sbjct: 404 KKKAQPVNKDRFISKMFLRGDSVIIVFRNPK*L 502
Score = 174 bits (374), Expect = 6e-043
Identities = 77/106 (72%), Positives = 83/106 (78%)
Frame = -3 / -2
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKART 224
HFGFL+T+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TMLQC S A T
Sbjct: 498 HFGFLKTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 319
Query: 223 RPSNFLLFRQLIRTWVLFLTLIMSTERGPXXXXXXXXXXXXXSAMG 86
RP +FLLF QLIRT VLF TLIM TERGP S++G
Sbjct: 318 RPRSFLLFLQLIRTCVLFFTLIMRTERGPVLNSSSSDFSGKSSSIG 181
Score = 116 bits (249), Expect = 1e-025
Identities = 50/96 (52%), Positives = 71/96 (73%)
Frame = -2 / -1
Query: 404 SFRVPEDNDDRIPTEEHLAYEPVLVHRESLLLAFTGLRYLGPHLPNVLKNHVAVPIEGSH 225
S + ++N+DR+ T++H A EP+LV+R S LLAFT L L PH ++L+NHVAVPI+ S+
Sbjct: 499 SLWISKNNNDRVSTKKHFADEPILVNRLSFLLAFTCLWNLCPHFFDILQNHVAVPIKCSN 320
Query: 224 ATKQLLVVPAVDKNLGIILDAHHEHRERTGAELLFL 117
+ K+L VV A+D+NL I+ AHHE+R+RT E L L
Sbjct: 319 SPKKLFVVSAIDQNLCIVFHAHHENRKRTSIEFLLL 212
>gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC23B03, mRNA sequence
Length = 589
Score = 210 bits (454), Expect = 6e-054
Identities = 88/93 (94%), Positives = 91/93 (97%)
Frame = +3 / +1
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSV MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 160 FNTGPLSVPMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 339
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 340 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 438
Score = 176 bits (378), Expect = 2e-043
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -3 / -3
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKART 224
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TMLQC S A T
Sbjct: 434 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 255
Query: 223 RPSNFLLFRQLIRTWVLFLTLIMSTERGPXXXXXXXXXXXXXSAMG 86
RP +FLLF QLIRT VLF TLIM TERGP S++G
Sbjct: 254 RPRSFLLFLQLIRTCVLFFTLIMGTERGPVLNSSSSDFSGKSSSIG 117
Score = 112 bits (240), Expect = 2e-024
Identities = 49/96 (51%), Positives = 69/96 (71%)
Frame = -2 / -2
Query: 404 SFRVPEDNDDRIPTEEHLAYEPVLVHRESLLLAFTGLRYLGPHLPNVLKNHVAVPIEGSH 225
S + ++N+DR+ T++H A EP+LV R S LLAFT L L PH ++L+NHVAVPI+ S+
Sbjct: 435 SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLCPHFFDILQNHVAVPIKCSN 256
Query: 224 ATKQLLVVPAVDKNLGIILDAHHEHRERTGAELLFL 117
+ K+L VV A+D+NL I+ AHH +R+RT E L L
Sbjct: 255 SPKKLFVVSAIDQNLCIVFHAHHGNRKRTSIEFLLL 148
>gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV061_D02 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 548
Score = 200 bits (431), Expect = 9e-051
Identities = 84/92 (91%), Positives = 86/92 (93%)
Frame = +3 / +1
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 202 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 381
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 404
KKKA PVN RFI FLRGDSVIIVLRNPK*
Sbjct: 382 KKKAQPVNXXRFIXXXFLRGDSVIIVLRNPK* 477
Score = 164 bits (353), Expect = 5e-040
Identities = 73/106 (68%), Positives = 78/106 (73%)
Frame = -3 / -1
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKART 224
HFGFLRT+MTESPRRN MNL TG AFFLPLPVFGTSVHISLTFS+TMLQC S A T
Sbjct: 476 HFGFLRTIMTESPRRNXXXMNLXXLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 297
Query: 223 RPSNFLLFRQLIRTWVLFLTLIMSTERGPXXXXXXXXXXXXXSAMG 86
RP +FLLF QLIRT VLF TLIM TERGP S++G
Sbjct: 296 RPRSFLLFLQLIRTCVLFFTLIMRTERGPVLNSSSSDFSGKSSSIG 159
Score = 106 bits (226), Expect = 2e-022
Identities = 47/96 (48%), Positives = 67/96 (69%)
Frame = -2 / -3
Query: 404 SFRVPEDNDDRIPTEEHLAYEPVLVHRESLLLAFTGLRYLGPHLPNVLKNHVAVPIEGSH 225
S + ++N+DR+ T++ EP V+R S LLAFT L L PH ++L+NHVAVPI+ S+
Sbjct: 477 SLWISKNNNDRVSTKKXXXDEPXXVNRLSFLLAFTCLWNLCPHFFDILQNHVAVPIKCSN 298
Query: 224 ATKQLLVVPAVDKNLGIILDAHHEHRERTGAELLFL 117
+ K+L VV A+D+NL I+ AHHE+R+RT E L L
Sbjct: 297 SPKKLFVVSAIDQNLCIVFHAHHENRKRTSIEFLLL 190
>gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_C06_A029 5', mRNA sequence
Length = 642
Score = 113 bits (242), Expect(3) = 5e-046
Identities = 46/48 (95%), Positives = 48/48 (100%)
Frame = +3 / +2
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 272
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 206 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 349
Score = 87.2 bits (184), Expect(3) = 5e-046
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +3 / +3
Query: 291 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 372 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 488
Score = 84.9 bits (179), Expect(2) = 3e-034
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = -3 / -3
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFG 290
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFG
Sbjct: 484 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFG 371
Score = 80.3 bits (169), Expect(2) = 3e-034
Identities = 37/62 (59%), Positives = 41/62 (66%)
Frame = -3 / -1
Query: 271 LTFSRTMLQCRSKARTRPSNFLLFRQLIRTWVLFLTLIMSTERGPXXXXXXXXXXXXXSA 92
LTFS+TMLQC S A TRP +FLLF QLIRT VLF TLIM TERGP S+
Sbjct: 348 LTFSKTMLQCLSNALTRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLNSSSSDFSGKSSS 169
Query: 91 MG 86
+G
Sbjct: 168 IG 163
Score = 22.1 bits (42), Expect(3) = 5e-046
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / +2
Query: 276 MWTEVPK 296
MWTEVPK
Sbjct: 356 MWTEVPK 376
>gb|AL749842.1|AL749842 AL749842 AS Pinus pinaster cDNA clone AS01G04 similar to SNRP, mRNA
sequence
Length = 616
Score = 144 bits (308), Expect = 8e-034
Identities = 59/69 (85%), Positives = 66/69 (95%)
Frame = +3 / -2
Query: 201 NNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVI 380
N KKLLGRV+AF RHC+MVLENV++MW+EVPKTGKG+KKA PVNKDRFISKMFLRGDSVI
Sbjct: 534 NTKKLLGRVKAFYRHCHMVLENVKKMWSEVPKTGKGQKKAQPVNKDRFISKMFLRGDSVI 355
Query: 381 IVLRNPK*V 407
IVLRNPK*+
Sbjct: 354 IVLRNPK*L 328
Score = 117 bits (250), Expect = 8e-026
Identities = 54/86 (62%), Positives = 59/86 (68%)
Frame = -3 / +2
Query: 457 PNSTTYC*QIDSLRVQATHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVH 278
P T Y + S H GFLRT+MTESPRRNILLMNLSL TG AFF PLPV GTS H
Sbjct: 278 PKGTLYPYEF*SSLQFVNHLGFLRTIMTESPRRNILLMNLSLLTG*AFFWPLPVLGTSDH 457
Query: 277 ISLTFSRTMLQCRSKARTRPSNFLLF 200
I LTFS+TM QC A TRP +F +F
Sbjct: 458 IFLTFSKTMWQCL*NALTRPRSFFVF 535
>gb|BF778981.1|BF778981 NXSI_091_F11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_091_F11 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 361
Score = 143 bits (307), Expect = 1e-033
Identities = 59/68 (86%), Positives = 61/68 (89%)
Frame = +3 / +2
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFD HCNMVLENV+EMWT PKTGK
Sbjct: 158 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDXHCNMVLENVKEMWTXXPKTGKX 337
Query: 309 KKKALPVN 332
KKA VN
Sbjct: 338 XKKAXXVN 361
Score = 105 bits (223), Expect = 4e-022
Identities = 49/78 (62%), Positives = 53/78 (67%)
Frame = -3 / -2
Query: 319 AFFLPLPVFGTSVHISLTFSRTMLQCRSKARTRPSNFLLFRQLIRTWVLFLTLIMSTERG 140
AFF LPVFG SVHISLTFS+TMLQ S A TRP +FLLF QLIRT VLF TLIM TERG
Sbjct: 348 AFFXXLPVFGXSVHISLTFSKTMLQXXSNALTRPRSFLLFLQLIRTCVLFFTLIMRTERG 169
Query: 139 PXXXXXXXXXXXXXSAMG 86
P S++G
Sbjct: 168 PVLNSSSSDFSGKSSSIG 115
>gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 3', mRNA sequence
Length = 571
Score = 104 bits (222), Expect(2) = 4e-033
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3 / +3
Query: 132 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 296
S GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 96 SQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK 260
Score = 57.0 bits (118), Expect(2) = 4e-033
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +3 / +3
Query: 312 KKALPVNKDRFISKMFLRGDSVIIVLRN 395
K PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 264 KNKKPVNKDRFISKMFLRGDSVILILRN 347
>gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 5', mRNA sequence
Length = 536
Score = 104 bits (222), Expect(2) = 4e-033
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3 / +1
Query: 132 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 296
S GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 64 SQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK 228
Score = 57.0 bits (118), Expect(2) = 4e-033
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +3 / +1
Query: 312 KKALPVNKDRFISKMFLRGDSVIIVLRN 395
K PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 232 KNKKPVNKDRFISKMFLRGDSVILILRN 315
>gb|AL749805.1|AL749805 AL749805 AS Pinus pinaster cDNA clone AS01C06 similar to SNRP, mRNA
sequence
Length = 618
Score = 72.5 bits (152), Expect(2) = 1e-026
Identities = 32/38 (84%), Positives = 34/38 (89%)
Frame = +3 / -3
Query: 294 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
K K KKKA PVNKDRFIS+MFLRGDSVIIVLRNPK*+
Sbjct: 442 KQVKAKKKAQPVNKDRFISQMFLRGDSVIIVLRNPK*L 329
Score = 67.0 bits (140), Expect(2) = 1e-026
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +3 / -2
Query: 207 KKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 320
K LG ++ HCNMVLENV++MW EVPKTGKGKKK+
Sbjct: 530 KSFLGELKHLIGHCNMVLENVKKMWAEVPKTGKGKKKS 417
Score = 63.4 bits (132), Expect(2) = 6e-022
Identities = 27/37 (72%), Positives = 28/37 (75%)
Frame = -3 / +3
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVF 293
H GFLRT+MTESPRRNI LMNLSL TG AFF F
Sbjct: 333 HLGFLRTIMTESPRRNIWLMNLSLLTG*AFFFAFTCF 443
Score = 60.6 bits (126), Expect(2) = 6e-022
Identities = 25/37 (67%), Positives = 26/37 (70%)
Frame = -3 / +1
Query: 316 FFLPLPVFGTSVHISLTFSRTMLQCRSKARTRPSNFL 206
FFLPLPVFGTS HI LTFS+TMLQC K P L
Sbjct: 421 FFLPLPVFGTSAHIFLTFSKTMLQCPIKCFNSPKKLL 531
>gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5', mRNA sequence
Length = 380
Score = 116 bits (249), Expect = 1e-025
Identities = 49/52 (94%), Positives = 51/52 (98%)
Frame = +3 / +3
Query: 252 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
MVLENV+EMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 3 MVLENVKEMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 158
Score = 112 bits (239), Expect = 3e-024
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -3 / -2
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTM 251
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TM
Sbjct: 154 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTM 2
>gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5' similar to Arabidopsis thaliana sequence
At3g62840 small nuclear ribonucleoprotein-like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 116 bits (249), Expect = 1e-025
Identities = 49/52 (94%), Positives = 51/52 (98%)
Frame = +3 / +3
Query: 252 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*V 407
MVLENV+EMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 3 MVLENVKEMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*L 158
Score = 112 bits (239), Expect = 3e-024
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -3 / -2
Query: 403 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTM 251
HFGFLRT+MTESPRRNILLMNLSL TG AFFLPLPVFGTSVHISLTFS+TM
Sbjct: 154 HFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTM 2
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 341,689,698
Number of Sequences: 355925
Number of extensions: 4791285
Number of successful extensions: 38946
Number of sequences better than 1.0e-020: 26
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9273834940
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)