TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.2
(867 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR182367.1|DR182367 RTMNUT1_44_C07.g1_A029 Roots minus m... 172 2e-063
gb|DR167446.1|DR167446 RTPHOS1_18_G10.g1_A029 Roots minus p... 159 2e-058
gb|DR071484.1|DR071484 RTDK1_20_E02.b1_A029 Roots, dark Pin... 149 7e-055
gb|CV031359.1|CV031359 RTNACL1_1_C09.b1_A029 Roots plus add... 141 3e-054
gb|CV034364.1|CV034364 RTNACL1_40_A11.g1_A029 Roots plus ad... 138 9e-054
gb|DR055256.1|DR055256 RTCA1_22_C01.g2_A029 Roots minus cal... 150 6e-053
gb|CF668420.1|CF668420 RTCNT1_36_H09.b1_A029 Root control P... 150 6e-053
gb|BX253771.1|BX253771 BX253771 Pinus pinaster differenciat... 150 6e-053
gb|DR024424.1|DR024424 STRS1_64_H01.g1_A034 Shoot tip pitch... 148 1e-051
gb|DR161526.1|DR161526 RTFE1_12_G11.b1_A029 Roots minus iro... 141 2e-050
gb|CF471275.1|CF471275 RTDS1_2_H04.g1_A015 Drought-stressed... 148 4e-045
gb|CX647752.1|CX647752 COLD1_19_G12.g1_A029 Root cold Pinus... 108 1e-042
gb|DR182292.1|DR182292 RTMNUT1_44_C07.b1_A029 Roots minus m... 91 5e-039
gb|DR015405.1|DR015405 STRS1_3_G09.b1_A034 Shoot tip pitch ... 86 5e-036
gb|BF517836.1|BF517836 NXSI_027_G07_F NXSI (Nsf Xylem Side ... 142 1e-035
gb|CF479056.1|CF479056 RTWW3_21_E08.g1_A022 Well-watered lo... 140 1e-032
gb|BG039647.1|BG039647 NXSI_102_E03_F NXSI (Nsf Xylem Side ... 91 1e-032
gb|CF478970.1|CF478970 RTWW3_21_E08.b1_A022 Well-watered lo... 92 6e-031
gb|DR022115.1|DR022115 STRS1_49_A06.b1_A034 Shoot tip pitch... 63 6e-030
gb|CF668505.1|CF668505 RTCNT1_36_H09.g1_A029 Root control P... 122 3e-027
gb|BG275889.1|BG275889 NXSI_149_B05_F NXSI (Nsf Xylem Side ... 69 6e-026
gb|CF476742.1|CF476742 RTWW3_3_B03.b1_A022 Well-watered lob... 85 4e-024
gb|DR099784.1|DR099784 STRR1_58_B11.g1_A033 Stem Response R... 111 1e-023
gb|CF479669.1|CF479669 RTWW3_11_B12.g1_A022 Well-watered lo... 73 2e-023
gb|CF401209.1|CF401209 RTWW1_10_A01.g1_A015 Well-watered lo... 73 2e-023
gb|DR071305.1|DR071305 RTDK1_19_B07.b1_A029 Roots, dark Pin... 73 3e-023
gb|CF402802.1|CF402802 RTWW1_22_A03.g1_A015 Well-watered lo... 73 4e-023
gb|CO366932.1|CO366932 RTK1_31_C05.b1_A029 Roots minus pota... 73 4e-023
gb|CF667048.1|CF667048 RTCNT1_27_H03.g1_A029 Root control P... 73 4e-023
gb|DR015493.1|DR015493 STRS1_3_G09.g1_A034 Shoot tip pitch ... 108 5e-023
gb|DR097177.1|DR097177 STRR1_33_B12.b1_A033 Stem Response R... 73 5e-023
gb|CF476250.1|CF476250 RTWW2_22_D03.b1_A021 Well-watered lo... 71 1e-022
gb|DR097253.1|DR097253 STRR1_33_B12.g3_A033 Stem Response R... 73 1e-022
gb|CF402352.1|CF402352 RTWW1_19_B02.g1_A015 Well-watered lo... 73 2e-022
gb|CF666969.1|CF666969 RTCNT1_27_H03.b1_A029 Root control P... 73 2e-022
gb|DR080777.1|DR080777 RTFEPL1_25_D08.b1_A029 Roots plus ad... 69 4e-022
gb|CF476367.1|CF476367 RTWW2_22_D03.g1_A021 Well-watered lo... 71 7e-022
gb|CF668650.1|CF668650 RTCNT1_37_G05.g1_A029 Root control P... 70 2e-021
gb|CO369182.1|CO369182 RTK1_45_B02.g1_A029 Roots minus pota... 70 2e-021
gb|CF402786.1|CF402786 RTWW1_22_H07.g1_A015 Well-watered lo... 70 2e-021
gb|CO174924.1|CO174924 NDL1_47_D08.b1_A029 Needles control ... 70 2e-021
gb|CF400592.1|CF400592 RTWW1_6_A02.g1_A015 Well-watered lob... 70 2e-021
gb|CF400319.1|CF400319 RTWW1_4_B02.g1_A015 Well-watered lob... 70 2e-021
gb|CO176703.1|CO176703 NDL1_63_E02.g1_A029 Needles control ... 69 2e-021
gb|BE996829.1|BE996829 NXCI_101_H05_F NXCI (Nsf Xylem Compr... 67 2e-021
gb|DT624337.1|DT624337 EST1158612 Sequencing ESTs from lobl... 69 6e-021
gb|CV138999.1|CV138999 EST850208 Sequencing ESTs from loblo... 69 6e-021
gb|CX646889.1|CX646889 COLD1_12_D10.b1_A029 Root cold Pinus... 69 6e-021
gb|CF402449.1|CF402449 RTWW1_17_E05.g1_A015 Well-watered lo... 69 6e-021
gb|CF401553.1|CF401553 RTWW1_13_E07.g1_A015 Well-watered lo... 69 6e-021
>gb|DR182367.1|DR182367 RTMNUT1_44_C07.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_44_C07_A029 5', mRNA sequence
Length = 830
Score = 172 bits (370), Expect(2) = 2e-063
Identities = 71/90 (78%), Positives = 82/90 (91%)
Frame = -3 / +3
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA++YGL +LA+ IQDD DNVTRF+MLAREPIIPR D+PFKTSIVF+LEEGPG LFKALA
Sbjct: 108 AAEIYGLQILADGIQDDSDNVTRFLMLAREPIIPRIDRPFKTSIVFTLEEGPGVLFKALA 287
Query: 649 VFALRDINLTKIESRPHKERPLRVSDDCSS 560
VFALRDINLTKIESRP ++RPLRV DD ++
Sbjct: 288 VFALRDINLTKIESRPQRKRPLRVVDDSNT 377
Score = 111 bits (236), Expect(2) = 6e-031
Identities = 56/79 (70%), Positives = 60/79 (75%)
Frame = +3 / -2
Query: 579 TRRGLSLCGRLSIFVRLMSLNANTASALKSCPGPSSSEKTMLVLNGLSVRGMMGSRASII 758
TR G L G LSIFVRL+SLNANTA ALK PGPSS KTMLVLNGLS+ GM+GS A+I
Sbjct: 358 TRNGRFL*GLLSIFVRLISLNANTARALKRTPGPSSRVKTMLVLNGLSILGMIGSLANIK 179
Query: 759 KRVTLSLSS*IFSARTSNP 815
RVTLS SS*I SAR P
Sbjct: 178 NRVTLSESS*IPSARICRP 122
Score = 91.3 bits (193), Expect(2) = 2e-063
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = -3 / +3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D + K FDYLFY+D EASMADP+ QNALG+L+EFATF+RVLGSYP D+
Sbjct: 360 VDDSNTGAAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDM 518
Score = 43.7 bits (89), Expect(2) = 6e-031
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = +3 / -2
Query: 426 SVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 518
S+G*LPRT NVANS R P+AF GSAI+A
Sbjct: 514 SIG*LPRTRINVANSCR*PKAFCARGSAIEA 422
>gb|DR167446.1|DR167446 RTPHOS1_18_G10.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_G10_A029 5', mRNA sequence
Length = 829
Score = 159 bits (342), Expect(2) = 2e-058
Identities = 67/90 (74%), Positives = 79/90 (87%)
Frame = -3 / +1
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA++YGL++LA IQDD DNVTRF+MLAREPIIPR D+PFKTSIVF+LE+GP FKALA
Sbjct: 286 AAEIYGLEILANGIQDDLDNVTRFLMLAREPIIPRIDRPFKTSIVFTLEDGPRIFFKALA 465
Query: 649 VFALRDINLTKIESRPHKERPLRVSDDCSS 560
VFALRDINLTKIESRP ++RPL V +D S+
Sbjct: 466 VFALRDINLTKIESRPQRKRPLWVVNDTST 555
Score = 105 bits (225), Expect(2) = 4e-030
Identities = 55/79 (69%), Positives = 58/79 (73%)
Frame = +3 / -3
Query: 579 TRRGLSLCGRLSIFVRLMSLNANTASALKSCPGPSSSEKTMLVLNGLSVRGMMGSRASII 758
T G L G LSIFVRL+SL ANTASALK GPSS KTMLVLNGLS+ GMMGS A+I
Sbjct: 536 THNGRFL*GLLSIFVRLISLRANTASALKKILGPSSRVKTMLVLNGLSILGMMGSLANIK 357
Query: 759 KRVTLSLSS*IFSARTSNP 815
RVTLS SS*I AR S P
Sbjct: 356 NRVTLSKSS*IPFARISRP 300
Score = 87.2 bits (184), Expect(2) = 2e-058
Identities = 33/42 (78%), Positives = 39/42 (92%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
FDYLFY+D EASMADP+ QNALG+L+EFATF+RVLGSYP D+
Sbjct: 598 FDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDM 723
Score = 46.0 bits (94), Expect(2) = 4e-030
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +3 / -3
Query: 426 SVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 518
S+G*LPRT NVANS R P+AF* GSAI+A
Sbjct: 719 SIG*LPRTRINVANSCR*PKAF*ARGSAIEA 627
>gb|DR071484.1|DR071484 RTDK1_20_E02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_20_E02_A029 3', mRNA sequence
Length = 782
Score = 149 bits (321), Expect(2) = 7e-055
Identities = 61/89 (68%), Positives = 75/89 (84%)
Frame = -3 / +1
Query: 835 SLAAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKA 656
S AA++YG++++A+ IQDD NVTRF++LAREPIIPR D+PFKTSIVF+ +EG G LFK
Sbjct: 97 SRAAEIYGMNIIADGIQDDASNVTRFVILAREPIIPRVDRPFKTSIVFAQDEGTGILFKV 276
Query: 655 LAVFALRDINLTKIESRPHKERPLRVSDD 569
LA FA RDI+LTKIESRP + RPLRV DD
Sbjct: 277 LAAFAFRDISLTKIESRPQRNRPLRVVDD 363
Score = 100 bits (214), Expect(2) = 1e-026
Identities = 54/86 (62%), Positives = 55/86 (63%)
Frame = +3 / -1
Query: 579 TRRGLSLCGRLSIFVRLMSLNANTASALKSCPGPSSSEKTMLVLNGLSVRGMMGSRASII 758
TR G LCG LSIFVRLMS A A LK P PSS KTMLVLNG S RGM+GSRA I
Sbjct: 353 TRSGRFLCGLLSIFVRLMSRKAKAARTLKRIPVPSSCAKTMLVLNGRSTRGMIGSRARIT 174
Query: 759 KRVTLSLSS*IFSARTSNPYSLAANE 836
KRVTL SS I SA P AA E
Sbjct: 173 KRVTLLASSWIPSAMIFMP*ISAARE 96
Score = 84.9 bits (179), Expect(2) = 7e-055
Identities = 34/56 (60%), Positives = 40/56 (71%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDVNEP 413
V D K F+YLFY+D EASMADP+ QNAL L+EF FLRVLGSYP D++ P
Sbjct: 355 VDDSNLGNAKYFEYLFYIDFEASMADPRAQNALAELQEFTNFLRVLGSYPMDISPP 522
Score = 39.6 bits (80), Expect(2) = 1e-026
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3 / -1
Query: 414 GSFTSVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 518
G S+G*LP TL+ + NS RAF* GSA++A
Sbjct: 521 GGLMSMG*LPSTLRKLVNSCSSARAF*ALGSAMEA 417
>gb|CV031359.1|CV031359 RTNACL1_1_C09.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_1_C09_A029 3', mRNA sequence
Length = 591
Score = 141 bits (302), Expect(2) = 3e-054
Identities = 59/71 (83%), Positives = 66/71 (92%)
Frame = -3 / +1
Query: 772 NVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKE 593
NVTRF+MLAREPIIPR D+PFKTSIVF+LEEGPG LFKALAVFALRDINLTKIESRP ++
Sbjct: 1 NVTRFLMLAREPIIPRIDRPFKTSIVFTLEEGPGVLFKALAVFALRDINLTKIESRPQRK 180
Query: 592 RPLRVSDDCSS 560
RPLRV DD ++
Sbjct: 181 RPLRVVDDSNT 213
Score = 96.4 bits (204), Expect(2) = 1e-026
Identities = 46/64 (71%), Positives = 50/64 (78%)
Frame = +3 / -2
Query: 579 TRRGLSLCGRLSIFVRLMSLNANTASALKSCPGPSSSEKTMLVLNGLSVRGMMGSRASII 758
TR G L G LSIFVRL+SLNANTA ALK PGPSS KTMLVLNGLS+ GM+GS A+I
Sbjct: 194 TRNGRFL*GLLSIFVRLISLNANTARALKRTPGPSSRVKTMLVLNGLSILGMIGSLANIK 15
Query: 759 KRVT 770
RVT
Sbjct: 14 NRVT 3
Score = 91.3 bits (193), Expect(2) = 3e-054
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D + K FDYLFY+D EASMADP+ QNALG+L+EFATF+RVLGSYP D+
Sbjct: 196 VDDSNTGAAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDM 354
Score = 43.7 bits (89), Expect(2) = 1e-026
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = +3 / -2
Query: 426 SVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 518
S+G*LPRT NVANS R P+AF GSAI+A
Sbjct: 350 SIG*LPRTRINVANSCR*PKAFCARGSAIEA 258
>gb|CV034364.1|CV034364 RTNACL1_40_A11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_40_A11_A029 5', mRNA sequence
Length = 810
Score = 138 bits (297), Expect(2) = 9e-054
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = -3 / -3
Query: 787 QDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRDINLTKIES 608
QDD DNVTRF+MLAREPIIPR D+PFKTSIVF+LE+GP FKALAVFALRDINLTKIES
Sbjct: 808 QDDLDNVTRFLMLAREPIIPRIDRPFKTSIVFTLEDGPRIFFKALAVFALRDINLTKIES 629
Query: 607 RPHKERPLRVSDDCSS 560
RP ++RPL V +D S+
Sbjct: 628 RPQRKRPLWVVNDTST 581
Score = 98.2 bits (208), Expect(2) = 8e-028
Identities = 50/70 (71%), Positives = 53/70 (75%)
Frame = +3 / +3
Query: 579 TRRGLSLCGRLSIFVRLMSLNANTASALKSCPGPSSSEKTMLVLNGLSVRGMMGSRASII 758
T G L G LSIFVRL+SL ANTASALK GPSS KTMLVLNGLS+ GMMGS A+I
Sbjct: 600 THNGRFL*GLLSIFVRLISLRANTASALKKILGPSSRVKTMLVLNGLSILGMMGSLANIK 779
Query: 759 KRVTLSLSS* 788
RVTLS SS*
Sbjct: 780 NRVTLSKSS* 809
Score = 92.3 bits (195), Expect(2) = 9e-054
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = -3 / -3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V+D + K FDYLFY+D EASMADP+ QNALG+L+EFATF+RVLGSYP D+
Sbjct: 598 VNDTSTGAAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDM 440
Score = 46.0 bits (94), Expect(2) = 8e-028
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +3 / +3
Query: 426 SVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 518
S+G*LPRT NVANS R P+AF* GSAI+A
Sbjct: 444 SIG*LPRTRINVANSCR*PKAF*ARGSAIEA 536
>gb|DR055256.1|DR055256 RTCA1_22_C01.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_22_C01_A029 5', mRNA sequence
Length = 729
Score = 150 bits (322), Expect(2) = 6e-053
Identities = 61/93 (65%), Positives = 77/93 (82%)
Frame = -3 / +1
Query: 847 SAPGSLAAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQ 668
S + AA++YG+++LA+ IQDD NVTRF+MLAREP+IPRTD+PFKTSIVF+ EEG G
Sbjct: 187 SIASARAAEIYGMNILADGIQDDVGNVTRFVMLAREPVIPRTDRPFKTSIVFAHEEGTGV 366
Query: 667 LFKALAVFALRDINLTKIESRPHKERPLRVSDD 569
LFK L+ FA R+INLTKIESRP + +P+RV DD
Sbjct: 367 LFKVLSAFAFRNINLTKIESRPQRSKPVRVVDD 465
Score = 78.0 bits (164), Expect(2) = 6e-053
Identities = 29/42 (69%), Positives = 36/42 (85%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
F+Y+FYVD EASMA+P+ QNAL ++EF TFLRVLGSYP D+
Sbjct: 493 FEYIFYVDFEASMANPRAQNALAEVQEFTTFLRVLGSYPMDI 618
>gb|CF668420.1|CF668420 RTCNT1_36_H09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_H09_A029 3', mRNA sequence
Length = 693
Score = 150 bits (322), Expect(2) = 6e-053
Identities = 61/93 (65%), Positives = 77/93 (82%)
Frame = -3 / +3
Query: 847 SAPGSLAAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQ 668
S + AA++YG+++LA+ IQDD NVTRF+MLAREP+IPRTD+PFKTSIVF+ EEG G
Sbjct: 87 SIASARAAEIYGMNILADGIQDDVGNVTRFVMLAREPVIPRTDRPFKTSIVFAHEEGTGV 266
Query: 667 LFKALAVFALRDINLTKIESRPHKERPLRVSDD 569
LFK L+ FA R+INLTKIESRP + +P+RV DD
Sbjct: 267 LFKVLSAFAFRNINLTKIESRPQRSKPVRVVDD 365
Score = 78.0 bits (164), Expect(2) = 6e-053
Identities = 29/42 (69%), Positives = 36/42 (85%)
Frame = -3 / +3
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
F+Y+FYVD EASMA+P+ QNAL ++EF TFLRVLGSYP D+
Sbjct: 393 FEYIFYVDFEASMANPRAQNALAEVQEFTTFLRVLGSYPMDI 518
>gb|BX253771.1|BX253771 BX253771 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088C10, mRNA sequence
Length = 634
Score = 150 bits (322), Expect(2) = 6e-053
Identities = 61/93 (65%), Positives = 77/93 (82%)
Frame = -3 / +1
Query: 847 SAPGSLAAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQ 668
S + AA++YG+++LA+ IQDD NVTRF+MLAREP+IPRTD+PFKTSIVF+ EEG G
Sbjct: 148 SIASARAAEIYGMNILADGIQDDVGNVTRFVMLAREPVIPRTDRPFKTSIVFAHEEGTGV 327
Query: 667 LFKALAVFALRDINLTKIESRPHKERPLRVSDD 569
LFK L+ FA R+INLTKIESRP + +P+RV DD
Sbjct: 328 LFKVLSAFAFRNINLTKIESRPQRSKPVRVVDD 426
Score = 78.0 bits (164), Expect(2) = 6e-053
Identities = 29/42 (69%), Positives = 36/42 (85%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
F+Y+FYVD EASMA+P+ QNAL ++EF TFLRVLGSYP D+
Sbjct: 454 FEYIFYVDFEASMANPRAQNALAEVQEFTTFLRVLGSYPMDI 579
>gb|DR024424.1|DR024424 STRS1_64_H01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_64_H01_A034 5', mRNA sequence
Length = 780
Score = 148 bits (317), Expect(2) = 1e-051
Identities = 61/89 (68%), Positives = 75/89 (84%)
Frame = -3 / +1
Query: 835 SLAAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKA 656
S AA+LYG+ VL + IQDD +NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK
Sbjct: 181 SRAAELYGMSVLFDGIQDDSNNVTRFVMLAREPIIPRTDRPFKTSIVFAQDKGTSVLFKV 360
Query: 655 LAVFALRDINLTKIESRPHKERPLRVSDD 569
L+ FA R+I+LTKIESRPH+ +PLRV DD
Sbjct: 361 LSAFAFRNISLTKIESRPHRNQPLRVVDD 447
Score = 75.8 bits (159), Expect(2) = 1e-051
Identities = 29/44 (65%), Positives = 37/44 (84%)
Frame = -3 / +1
Query: 553 KNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
K+F+Y+FYVD EASMAD + QNAL ++EF +FLRVLGSYP D+
Sbjct: 469 KHFEYMFYVDFEASMADTRAQNALQEVQEFTSFLRVLGSYPMDM 600
>gb|DR161526.1|DR161526 RTFE1_12_G11.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_G11_A029 3', mRNA sequence
Length = 727
Score = 141 bits (303), Expect(2) = 2e-050
Identities = 57/82 (69%), Positives = 70/82 (85%)
Frame = -3 / +3
Query: 814 GLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALR 635
G+++LA+ IQDD NVTRF+MLAREP+IPRTD+PFKTSIVF+ EEG G LFK L+ FA R
Sbjct: 3 GMNILADGIQDDVGNVTRFVMLAREPVIPRTDRPFKTSIVFAHEEGTGVLFKVLSAFAFR 182
Query: 634 DINLTKIESRPHKERPLRVSDD 569
+INLTKIESRP + +P+RV DD
Sbjct: 183 NINLTKIESRPQRSKPVRVVDD 248
Score = 78.0 bits (164), Expect(2) = 2e-050
Identities = 29/42 (69%), Positives = 36/42 (85%)
Frame = -3 / +3
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
F+Y+FYVD EASMA+P+ QNAL ++EF TFLRVLGSYP D+
Sbjct: 276 FEYIFYVDFEASMANPRAQNALAEVQEFTTFLRVLGSYPMDI 401
>gb|CF471275.1|CF471275 RTDS1_2_H04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_2_H04_A015 5', mRNA sequence
Length = 686
Score = 148 bits (317), Expect(2) = 4e-045
Identities = 61/89 (68%), Positives = 75/89 (84%)
Frame = -3 / +2
Query: 835 SLAAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKA 656
S AA+LYG+ VL + IQDD +NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK
Sbjct: 299 SRAAELYGMSVLFDGIQDDSNNVTRFVMLAREPIIPRTDRPFKTSIVFAQDKGTSVLFKV 478
Query: 655 LAVFALRDINLTKIESRPHKERPLRVSDD 569
L+ FA R+I+LTKIESRPH+ +PLRV DD
Sbjct: 479 LSAFAFRNISLTKIESRPHRNQPLRVVDD 565
Score = 54.2 bits (112), Expect(2) = 4e-045
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = -3 / +2
Query: 553 KNFDYLFYVDLEASMADPKTQNALGNLKEFATF 455
K+F+Y+FYVD EASMAD + QNAL ++EF +F
Sbjct: 587 KHFEYMFYVDFEASMADTRAQNALQEVQEFTSF 685
>gb|CX647752.1|CX647752 COLD1_19_G12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_19_G12_A029 5', mRNA sequence
Length = 645
Score = 108 bits (230), Expect(2) = 1e-042
Identities = 43/60 (71%), Positives = 55/60 (91%)
Frame = -3 / +1
Query: 793 NIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRDINLTKI 614
++QDD NVTRF+MLAR+PIIPRTD+PFKTSIVF++++ PG +FKALAVFA R+INLTK+
Sbjct: 97 SVQDDFYNVTRFLMLARDPIIPRTDRPFKTSIVFTVDDRPGAVFKALAVFAFRNINLTKL 276
Score = 85.4 bits (180), Expect(2) = 1e-042
Identities = 37/52 (71%), Positives = 40/52 (76%)
Frame = -3 / +2
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTD 425
V D S K FDYLFYVD EASMAD + QNAL +L+EFATFLRVLGSYP D
Sbjct: 380 VDDRNSGTAKYFDYLFYVDFEASMADLRAQNALSHLQEFATFLRVLGSYPID 535
>gb|DR182292.1|DR182292 RTMNUT1_44_C07.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_44_C07_A029 3', mRNA sequence
Length = 874
Score = 91.3 bits (193), Expect(2) = 5e-039
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = -3 / +3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D + K FDYLFY+D EASMADP+ QNALG+L+EFATF+RVLGSYP D+
Sbjct: 132 VDDSNTGAAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDM 290
Score = 90.4 bits (191), Expect(2) = 5e-039
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = -3 / +3
Query: 706 TSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCSS 560
TS+ F+LEEGPG LFKALAVFALRDINLTKIESRP ++RPLRV DD ++
Sbjct: 3 TSMFFTLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNT 149
>gb|DR015405.1|DR015405 STRS1_3_G09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_G09_A034 3', mRNA sequence
Length = 843
Score = 86.3 bits (182), Expect(2) = 5e-036
Identities = 34/46 (73%), Positives = 43/46 (93%)
Frame = -3 / +2
Query: 751 LAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRDINLTKI 614
LAR+PIIPRTD+PFKTSIVF++++ PG +FKALAVFA R+INLTK+
Sbjct: 2 LARDPIIPRTDRPFKTSIVFTVDDRPGAVFKALAVFAFRNINLTKL 139
Score = 85.4 bits (180), Expect(2) = 5e-036
Identities = 37/52 (71%), Positives = 40/52 (76%)
Frame = -3 / +3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTD 425
V D S K FDYLFYVD EASMAD + QNAL +L+EFATFLRVLGSYP D
Sbjct: 243 VDDRNSGTAKYFDYLFYVDFEASMADLRAQNALSHLQEFATFLRVLGSYPID 398
>gb|BF517836.1|BF517836 NXSI_027_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_027_G07 5' similar to Arabidopsis thaliana
sequence At1g08250 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 142 bits (304), Expect(2) = 1e-035
Identities = 58/90 (64%), Positives = 73/90 (81%)
Frame = -3 / +2
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA++YGLD+L IQDD NVTRF+MLAR+PIIPRTD+PFKTSIVF++++ PG +F LA
Sbjct: 143 AAEIYGLDILLNGIQDDFYNVTRFLMLARDPIIPRTDRPFKTSIVFTVDDRPGAVFXXLA 322
Query: 649 VFALRDINLTKIESRPHKERPLRVSDDCSS 560
VFA R+INLTKIE P ++RPL + DD S
Sbjct: 323 VFAFRNINLTKIEXXPQRKRPLXMVDDXXS 412
Score = 28.6 bits (56), Expect(2) = 1e-035
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3 / +2
Query: 580 VSDDCSSLLKNFDYLFYVDLEAS 512
V D S K FDYL VD EAS
Sbjct: 395 VDDXXSGTAKYFDYLXXVDFEAS 463
>gb|CF479056.1|CF479056 RTWW3_21_E08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_E08_A022 5', mRNA sequence
Length = 745
Score = 140 bits (301), Expect = 1e-032
Identities = 59/74 (79%), Positives = 67/74 (90%)
Frame = -3 / +3
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA++YGL++LA IQDD DNVTRF+MLAREPIIPR D+PFKTSIVF+LE+GP FKALA
Sbjct: 522 AAEIYGLEILANGIQDDLDNVTRFLMLAREPIIPRIDRPFKTSIVFTLEDGPRIFFKALA 701
Query: 649 VFALRDINLTKIES 608
VFALRDINLTKIES
Sbjct: 702 VFALRDINLTKIES 743
>gb|BG039647.1|BG039647 NXSI_102_E03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_102_E03 5' similar to Arabidopsis thaliana
sequence At1g11790 putative chloroplast prephenate
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 472
Score = 91.3 bits (193), Expect(2) = 1e-032
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D + K FDYLFY+D EASMADP+ QNALG+L+EFATF+RVLGSYP D+
Sbjct: 91 VDDSNTGAAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDM 249
Score = 68.9 bits (144), Expect(2) = 1e-032
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = -3 / +1
Query: 667 LFKALAVFALRDINLTKIESRPHKERPLRVSDDCSS 560
LFKALAVFALRDINLTKIESRP ++RPLRV DD ++
Sbjct: 1 LFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNT 108
>gb|CF478970.1|CF478970 RTWW3_21_E08.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_E08_A022 3', mRNA sequence
Length = 595
Score = 92.3 bits (195), Expect(2) = 6e-031
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V+D + K FDYLFY+D EASMADP+ QNALG+L+EFATF+RVLGSYP D+
Sbjct: 91 VNDTSTGAAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDM 249
Score = 62.5 bits (130), Expect(2) = 6e-031
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = -3 / +1
Query: 664 FKALAVFALRDINLTKIESRPHKERPLRVSDDCSS 560
FKALAVFALRDINLTKIESRP ++RPL V +D S+
Sbjct: 4 FKALAVFALRDINLTKIESRPQRKRPLWVVNDTST 108
>gb|DR022115.1|DR022115 STRS1_49_A06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_49_A06_A034 3', mRNA sequence
Length = 757
Score = 62.9 bits (131), Expect(3) = 6e-030
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = -3 / +3
Query: 592 RPLRVSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSY 434
R L + + ++ F+Y+FY+D EAS ADP Q AL ++ FATF+RVLG Y
Sbjct: 492 RVLDIDAKGGAAVRQFEYVFYIDFEASEADPHAQRALEEVRRFATFVRVLGCY 650
Score = 53.8 bits (111), Expect(3) = 6e-030
Identities = 20/31 (64%), Positives = 28/31 (90%)
Frame = -3 / +3
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREP 737
AA++YGLDV+A N+QD+ NVTRF++LAR+P
Sbjct: 216 AAEIYGLDVVARNVQDEPWNVTRFLVLARQP 308
Score = 52.4 bits (108), Expect(3) = 6e-030
Identities = 24/50 (48%), Positives = 32/50 (64%)
Frame = -3 / +3
Query: 721 DKPFKTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSD 572
D+ +KTSIV + E G L K L+VF+ +I+LTK+E P PLRV D
Sbjct: 354 DRAWKTSIVIAHEGGLDVLLKLLSVFSFHNISLTKLEVNPQGSAPLRVLD 503
>gb|CF668505.1|CF668505 RTCNT1_36_H09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_H09_A029 5', mRNA sequence
Length = 794
Score = 122 bits (261), Expect = 3e-027
Identities = 50/76 (65%), Positives = 63/76 (82%)
Frame = -3 / +2
Query: 847 SAPGSLAAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQ 668
S + AA++YG+++LA+ IQDD NVTRF+MLAREP+IPRTD+PFKTSIVF+ EEG G
Sbjct: 566 SIASARAAEIYGMNILADGIQDDVGNVTRFVMLAREPVIPRTDRPFKTSIVFAHEEGTGV 745
Query: 667 LFKALAVFALRDINLT 620
LFK L+ FA R+INLT
Sbjct: 746 LFKVLSAFAFRNINLT 793
>gb|BG275889.1|BG275889 NXSI_149_B05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_149_B05 5' similar to Arabidopsis thaliana
sequence At1g11790 putative chloroplast prephenate
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 229
Score = 68.9 bits (144), Expect(2) = 6e-026
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = -3 / +1
Query: 667 LFKALAVFALRDINLTKIESRPHKERPLRVSDDCSS 560
LFKALAVFALRDINLTKIESRP ++RPLRV DD ++
Sbjct: 1 LFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNT 108
Score = 68.4 bits (143), Expect(2) = 6e-026
Identities = 28/46 (60%), Positives = 33/46 (71%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVL 443
V D + K FDYLFY+D EASMADP+ QNA +L FATF+RVL
Sbjct: 91 VDDSNTGAAKYFDYLFYIDFEASMADPRAQNAXXHLXXFATFMRVL 228
>gb|CF476742.1|CF476742 RTWW3_3_B03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_3_B03_A022 3', mRNA sequence
Length = 496
Score = 84.9 bits (179), Expect(2) = 4e-024
Identities = 34/56 (60%), Positives = 40/56 (71%)
Frame = -3 / +3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDVNEP 413
V D K F+YLFY+D EASMADP+ QNAL L+EF FLRVLGSYP D++ P
Sbjct: 69 VDDSNLGNAKYFEYLFYIDFEASMADPRAQNALAELQEFTNFLRVLGSYPMDISPP 236
Score = 46.9 bits (96), Expect(2) = 4e-024
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = -3 / +3
Query: 643 ALRDINLTKIESRPHKERPLRVSDD 569
A RDI+LTKIESRP + RPLRV DD
Sbjct: 3 AFRDISLTKIESRPQRNRPLRVVDD 77
>gb|DR099784.1|DR099784 STRR1_58_B11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_58_B11_A033 5', mRNA sequence
Length = 545
Score = 111 bits (236), Expect = 1e-023
Identities = 45/69 (65%), Positives = 57/69 (82%)
Frame = -3 / +3
Query: 847 SAPGSLAAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQ 668
S + AA++YG+++LA+ IQDD NVTRF+MLAREP+IPRTD+PFKTSIVF+ EEG G
Sbjct: 339 SIASARAAEIYGMNILADGIQDDVGNVTRFVMLAREPVIPRTDRPFKTSIVFAHEEGTGV 518
Query: 667 LFKALAVFA 641
LFK L+ FA
Sbjct: 519 LFKVLSAFA 545
>gb|CF479669.1|CF479669 RTWW3_11_B12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_11_B12_A022 5', mRNA sequence
Length = 636
Score = 73.5 bits (154), Expect(4) = 2e-023
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = -3 / -2
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG G LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 491 KTTVAFALKEGTGDLFKALSIFAVRDITVTKIESRPQRQKPLRM 360
Score = 43.7 bits (89), Expect(4) = 2e-023
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / -2
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 623 IAAREYGLEVVEEEIQDDSSNTTRFLILGK 534
Score = 27.2 bits (53), Expect(4) = 2e-023
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / -2
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 317 FEYVFFVDLEAPATDDNPDSLQRGLEQ 237
Score = 23.1 bits (44), Expect(4) = 2e-023
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2 / -3
Query: 95 CWRICVMVACRL 60
C +IC++V CR+
Sbjct: 127 CMQICILVNCRV 92
>gb|CF401209.1|CF401209 RTWW1_10_A01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_A01_A015 5', mRNA sequence
Length = 656
Score = 73.5 bits (154), Expect(4) = 2e-023
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = -3 / +3
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG G LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 180 KTTVAFALKEGTGDLFKALSIFAVRDITVTKIESRPQRQKPLRM 311
Score = 43.7 bits (89), Expect(4) = 2e-023
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +3
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 48 IAAREYGLEVVEEEIQDDSSNTTRFLILGK 137
Score = 27.2 bits (53), Expect(4) = 2e-023
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +3
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 354 FEYVFFVDLEAPATDDNPDSLQRGLEQ 434
Score = 23.1 bits (44), Expect(4) = 2e-023
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2 / +1
Query: 95 CWRICVMVACRL 60
C +IC++V CR+
Sbjct: 544 CMQICILVNCRV 579
>gb|DR071305.1|DR071305 RTDK1_19_B07.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_B07_A029 3', mRNA sequence
Length = 754
Score = 73.5 bits (154), Expect(4) = 3e-023
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG G LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 226 KTTVAFALKEGTGDLFKALSIFAVRDITVTKIESRPQRQKPLRM 357
Score = 43.7 bits (89), Expect(4) = 3e-023
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 94 IAAREYGLEVVEEEIQDDSSNTTRFLILGK 183
Score = 27.2 bits (53), Expect(4) = 3e-023
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 400 FEYVFFVDLEAPATDDNPDSLQRGLEQ 480
Score = 23.1 bits (44), Expect(4) = 3e-023
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 95 CWRICVMVACRL 60
C +IC++V CR+
Sbjct: 590 CMQICILVNCRV 625
>gb|CF402802.1|CF402802 RTWW1_22_A03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_22_A03_A015 5', mRNA sequence
Length = 809
Score = 73.5 bits (154), Expect(4) = 4e-023
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG G LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 361 KTTVAFALKEGTGDLFKALSIFAVRDITVTKIESRPQRQKPLRM 492
Score = 43.7 bits (89), Expect(4) = 4e-023
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 229 IAAREYGLEVVEEEIQDDSSNTTRFLILGK 318
Score = 27.2 bits (53), Expect(4) = 4e-023
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 535 FEYVFFVDLEAPATDDNPDSLQRGLEQ 615
Score = 23.1 bits (44), Expect(4) = 4e-023
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 95 CWRICVMVACRL 60
C +IC++V CR+
Sbjct: 725 CMQICILVNCRV 760
>gb|CO366932.1|CO366932 RTK1_31_C05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_31_C05_A029 3', mRNA sequence
Length = 808
Score = 73.5 bits (154), Expect(4) = 4e-023
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG G LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 220 KTTVAFALKEGTGDLFKALSIFAVRDITVTKIESRPQRQKPLRM 351
Score = 43.7 bits (89), Expect(4) = 4e-023
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 88 IAAREYGLEVVEEEIQDDSSNTTRFLILGK 177
Score = 27.2 bits (53), Expect(4) = 4e-023
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 394 FEYVFFVDLEAPATDDNPDSLQRGLEQ 474
Score = 23.1 bits (44), Expect(4) = 4e-023
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 95 CWRICVMVACRL 60
C +IC++V CR+
Sbjct: 584 CMQICILVNCRV 619
>gb|CF667048.1|CF667048 RTCNT1_27_H03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_H03_A029 5', mRNA sequence
Length = 818
Score = 73.5 bits (154), Expect(4) = 4e-023
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = -3 / +3
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG G LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 369 KTTVAFALKEGTGDLFKALSIFAVRDITVTKIESRPQRQKPLRM 500
Score = 43.7 bits (89), Expect(4) = 4e-023
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +3
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 237 IAAREYGLEVVEEEIQDDSSNTTRFLILGK 326
Score = 27.2 bits (53), Expect(4) = 4e-023
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +3
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 543 FEYVFFVDLEAPATDDNPDSLQRGLEQ 623
Score = 23.1 bits (44), Expect(4) = 4e-023
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2 / +1
Query: 95 CWRICVMVACRL 60
C +IC++V CR+
Sbjct: 733 CMQICILVNCRV 768
>gb|DR015493.1|DR015493 STRS1_3_G09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_G09_A034 5', mRNA sequence
Length = 878
Score = 108 bits (231), Expect = 5e-023
Identities = 46/79 (58%), Positives = 60/79 (75%)
Frame = -3 / +1
Query: 850 DSAPGSLAAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPG 671
+ A L L +D A +DD NVTRF+MLAR+PIIPRTD+PFKTSIVF++++ PG
Sbjct: 634 EKALSGLGVALENMDDTASAAKDDFYNVTRFLMLARDPIIPRTDRPFKTSIVFTVDDRPG 813
Query: 670 QLFKALAVFALRDINLTKI 614
+FKALAVFA R+INLT++
Sbjct: 814 AVFKALAVFAFRNINLTQL 870
>gb|DR097177.1|DR097177 STRR1_33_B12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_B12_A033 3', mRNA sequence
Length = 838
Score = 73.5 bits (154), Expect(4) = 5e-023
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = -3 / +3
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG G LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 312 KTTVAFALKEGTGDLFKALSIFAVRDITVTKIESRPQRQKPLRM 443
Score = 43.7 bits (89), Expect(4) = 5e-023
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +3
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 180 IAAREYGLEVVEEEIQDDSSNTTRFLILGK 269
Score = 27.2 bits (53), Expect(4) = 5e-023
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +3
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 486 FEYVFFVDLEAPATDDNPDSLQRGLEQ 566
Score = 23.1 bits (44), Expect(4) = 5e-023
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2 / +1
Query: 95 CWRICVMVACRL 60
C +IC++V CR+
Sbjct: 676 CMQICILVNCRV 711
>gb|CF476250.1|CF476250 RTWW2_22_D03.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_22_D03_A021 3', mRNA sequence
Length = 666
Score = 70.7 bits (148), Expect(4) = 1e-022
Identities = 26/44 (59%), Positives = 38/44 (86%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 238 KTTVAFALKEGTADLFKALSIFAVRDITVTKIESRPQRQKPLRM 369
Score = 43.7 bits (89), Expect(4) = 1e-022
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 106 IAAREYGLEVVEEQIQDDSSNTTRFLILGK 195
Score = 27.2 bits (53), Expect(4) = 1e-022
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 412 FEYVFFVDLEAPATDDNPDSLQRGLEQ 492
Score = 23.5 bits (45), Expect(4) = 1e-022
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 95 CWRICVMVACRL 60
C +IC++V CR+
Sbjct: 602 CMQICILVKCRV 637
>gb|DR097253.1|DR097253 STRR1_33_B12.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_B12_A033 5', mRNA sequence
Length = 898
Score = 73.5 bits (154), Expect(3) = 1e-022
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = -3 / +3
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG G LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 507 KTTVAFALKEGTGDLFKALSIFAVRDITVTKIESRPQRQKPLRM 638
Score = 43.7 bits (89), Expect(3) = 1e-022
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +3
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 375 IAAREYGLEVVEEEIQDDSSNTTRFLILGK 464
Score = 27.2 bits (53), Expect(3) = 1e-022
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +3
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 681 FEYVFFVDLEAPATDDNPDSLQRGLEQ 761
>gb|CF402352.1|CF402352 RTWW1_19_B02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_19_B02_A015 5', mRNA sequence
Length = 695
Score = 73.5 bits (154), Expect(3) = 2e-022
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG G LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 448 KTTVAFALKEGTGDLFKALSIFAVRDITVTKIESRPQRQKPLRM 579
Score = 43.7 bits (89), Expect(3) = 2e-022
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 316 IAAREYGLEVVEEEIQDDSSNTTRFLILGK 405
Score = 26.7 bits (52), Expect(3) = 2e-022
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMAD 503
F+Y+F+VDLEA D
Sbjct: 622 FEYVFFVDLEAPATD 666
>gb|CF666969.1|CF666969 RTCNT1_27_H03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_H03_A029 3', mRNA sequence
Length = 690
Score = 73.5 bits (154), Expect(4) = 2e-022
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = -3 / +2
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG G LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 128 KTTVAFALKEGTGDLFKALSIFAVRDITVTKIESRPQRQKPLRM 259
Score = 40.9 bits (83), Expect(4) = 2e-022
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = -3 / +2
Query: 826 AKLYGLDVLAENIQDDKDNVTRFMMLAR 743
A+ YGL+V+ E IQDD N TRF++L +
Sbjct: 2 AREYGLEVVEEEIQDDSSNTTRFLILGK 85
Score = 27.2 bits (53), Expect(4) = 2e-022
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +2
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 302 FEYVFFVDLEAPATDDNPDSLQRGLEQ 382
Score = 23.1 bits (44), Expect(4) = 2e-022
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2 / +3
Query: 95 CWRICVMVACRL 60
C +IC++V CR+
Sbjct: 492 CMQICILVNCRV 527
>gb|DR080777.1|DR080777 RTFEPL1_25_D08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_25_D08_A029 3', mRNA sequence
Length = 749
Score = 69.3 bits (145), Expect(4) = 4e-022
Identities = 25/44 (56%), Positives = 38/44 (86%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG LFKAL++FA+RDI +T+IESRP +++PLR+
Sbjct: 154 KTTVAFALKEGTADLFKALSIFAVRDITVTRIESRPQRQKPLRM 285
Score = 43.7 bits (89), Expect(4) = 4e-022
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 22 IAAREYGLEVVEEQIQDDSSNTTRFLILGK 111
Score = 27.2 bits (53), Expect(4) = 4e-022
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 328 FEYVFFVDLEAPATDDNPDSLQRGLEQ 408
Score = 23.5 bits (45), Expect(4) = 4e-022
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 95 CWRICVMVACRL 60
C +IC++V CR+
Sbjct: 518 CMQICILVKCRV 553
>gb|CF476367.1|CF476367 RTWW2_22_D03.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_22_D03_A021 5', mRNA sequence
Length = 629
Score = 70.7 bits (148), Expect(3) = 7e-022
Identities = 26/44 (59%), Positives = 38/44 (86%)
Frame = -3 / +2
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG LFKAL++FA+RDI +TKIESRP +++PLR+
Sbjct: 374 KTTVAFALKEGTADLFKALSIFAVRDITVTKIESRPQRQKPLRM 505
Score = 43.7 bits (89), Expect(3) = 7e-022
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +2
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 242 IAAREYGLEVVEEQIQDDSSNTTRFLILGK 331
Score = 27.2 bits (53), Expect(3) = 7e-022
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +2
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 548 FEYVFFVDLEAPATDDNPDSLQRGLEQ 628
>gb|CF668650.1|CF668650 RTCNT1_37_G05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_G05_A029 5', mRNA sequence
Length = 810
Score = 69.8 bits (146), Expect(3) = 2e-021
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL++G LFKAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 388 KTTVAFSLKQGTADLFKALSIFAVRDIKVTKIESRPLRENPLRL 519
Score = 42.3 bits (86), Expect(3) = 2e-021
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+A + YGL+V+ E IQDD N TRF++L++
Sbjct: 256 IAGREYGLEVVEEEIQDDSSNTTRFLILSK 345
Score = 28.1 bits (55), Expect(3) = 2e-021
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKT 494
F+Y+F+VDLE ++D +T
Sbjct: 556 FEYVFFVDLELPVSDDQT 609
>gb|CO369182.1|CO369182 RTK1_45_B02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_45_B02_A029 5', mRNA sequence
Length = 790
Score = 69.8 bits (146), Expect(3) = 2e-021
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL++G LFKAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 247 KTTVAFSLKQGTADLFKALSIFAVRDIKVTKIESRPLRENPLRL 378
Score = 42.3 bits (86), Expect(3) = 2e-021
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+A + YGL+V+ E IQDD N TRF++L++
Sbjct: 115 IAGREYGLEVVEEEIQDDSSNTTRFLILSK 204
Score = 28.1 bits (55), Expect(3) = 2e-021
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKT 494
F+Y+F+VDLE ++D +T
Sbjct: 415 FEYVFFVDLELPVSDDQT 468
>gb|CF402786.1|CF402786 RTWW1_22_H07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_22_H07_A015 5', mRNA sequence
Length = 787
Score = 69.8 bits (146), Expect(3) = 2e-021
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL++G LFKAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 331 KTTVAFSLKQGTADLFKALSIFAVRDIKVTKIESRPLRENPLRL 462
Score = 42.3 bits (86), Expect(3) = 2e-021
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+A + YGL+V+ E IQDD N TRF++L++
Sbjct: 199 IAGREYGLEVVEEEIQDDSSNTTRFLILSK 288
Score = 28.1 bits (55), Expect(3) = 2e-021
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKT 494
F+Y+F+VDLE ++D +T
Sbjct: 499 FEYVFFVDLELPVSDDQT 552
>gb|CO174924.1|CO174924 NDL1_47_D08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_47_D08_A029 3', mRNA sequence
Length = 749
Score = 69.8 bits (146), Expect(3) = 2e-021
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = -3 / -2
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL++G LFKAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 427 KTTVAFSLKQGTADLFKALSIFAVRDIKVTKIESRPLRENPLRL 296
Score = 42.3 bits (86), Expect(3) = 2e-021
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -3 / -2
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+A + YGL+V+ E IQDD N TRF++L++
Sbjct: 559 IAGREYGLEVVEEEIQDDSSNTTRFLILSK 470
Score = 28.1 bits (55), Expect(3) = 2e-021
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3 / -2
Query: 547 FDYLFYVDLEASMADPKT 494
F+Y+F+VDLE ++D +T
Sbjct: 259 FEYVFFVDLELPVSDDQT 206
>gb|CF400592.1|CF400592 RTWW1_6_A02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_6_A02_A015 5', mRNA sequence
Length = 668
Score = 69.8 bits (146), Expect(3) = 2e-021
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = -3 / +3
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL++G LFKAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 417 KTTVAFSLKQGTADLFKALSIFAVRDIKVTKIESRPLRENPLRL 548
Score = 42.3 bits (86), Expect(3) = 2e-021
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -3 / +3
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+A + YGL+V+ E IQDD N TRF++L++
Sbjct: 285 IAGREYGLEVVEEEIQDDSSNTTRFLILSK 374
Score = 28.1 bits (55), Expect(3) = 2e-021
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3 / +3
Query: 547 FDYLFYVDLEASMADPKT 494
F+Y+F+VDLE ++D +T
Sbjct: 585 FEYVFFVDLELPVSDDQT 638
>gb|CF400319.1|CF400319 RTWW1_4_B02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_B02_A015 5', mRNA sequence
Length = 660
Score = 69.8 bits (146), Expect(3) = 2e-021
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL++G LFKAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 295 KTTVAFSLKQGTADLFKALSIFAVRDIKVTKIESRPLRENPLRL 426
Score = 42.3 bits (86), Expect(3) = 2e-021
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+A + YGL+V+ E IQDD N TRF++L++
Sbjct: 163 IAGREYGLEVVEEEIQDDSSNTTRFLILSK 252
Score = 28.1 bits (55), Expect(3) = 2e-021
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKT 494
F+Y+F+VDLE ++D +T
Sbjct: 463 FEYVFFVDLELPVSDDQT 516
>gb|CO176703.1|CO176703 NDL1_63_E02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_63_E02_A029 5', mRNA sequence
Length = 625
Score = 69.3 bits (145), Expect(3) = 2e-021
Identities = 25/44 (56%), Positives = 38/44 (86%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ F+L+EG LFKAL++FA+RDI +T+IESRP +++PLR+
Sbjct: 370 KTTVAFALKEGTADLFKALSIFAVRDITVTRIESRPQRQKPLRM 501
Score = 43.7 bits (89), Expect(3) = 2e-021
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLAR 743
+AA+ YGL+V+ E IQDD N TRF++L +
Sbjct: 238 IAAREYGLEVVEEQIQDDSSNTTRFLILGK 327
Score = 27.2 bits (53), Expect(3) = 2e-021
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMADPKTQNALGNLKE 467
F+Y+F+VDLEA D + L++
Sbjct: 544 FEYVFFVDLEAPATDDNPDSLQRGLEQ 624
>gb|BE996829.1|BE996829 NXCI_101_H05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_101_H05 5' similar to Arabidopsis
thaliana sequence At1g08250 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 389
Score = 67.0 bits (140), Expect(2) = 2e-021
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = -3 / +3
Query: 553 KNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
K+F+Y+FYV E SMAD + QNAL +EF +FL VLGSYP D+
Sbjct: 123 KHFEYMFYVXFEXSMADTRAQNALQEXQEFTSFLXVLGSYPMDM 254
Score = 55.6 bits (115), Expect(2) = 2e-021
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = -3 / +3
Query: 667 LFKALAVFALRDINLTKIESRPHKERPLRVSDD 569
LFK L+ FA R+I+LTKIES PH+ +PLRV DD
Sbjct: 3 LFKXLSAFAFRNISLTKIESXPHRNQPLRVVDD 101
>gb|DT624337.1|DT624337 EST1158612 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAD54 5' end, mRNA sequence
Length = 829
Score = 68.9 bits (144), Expect(3) = 6e-021
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = -3 / +2
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL+EG L KAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 419 KTTVAFSLKEGTADLCKALSIFAVRDIKVTKIESRPQRENPLRM 550
Score = 40.9 bits (83), Expect(3) = 6e-021
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -3 / +2
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLARE 740
+A + YGL+V+ E +QDD N TRF++L ++
Sbjct: 290 IAGREYGLEVVEEEMQDDSSNATRFLILTKK 382
Score = 28.6 bits (56), Expect(3) = 6e-021
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3 / +2
Query: 547 FDYLFYVDLEASMAD 503
F+Y+F+VDLEA AD
Sbjct: 593 FEYVFFVDLEAPAAD 637
>gb|CV138999.1|CV138999 EST850208 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB982 5' end, mRNA sequence
Length = 826
Score = 68.9 bits (144), Expect(3) = 6e-021
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = -3 / +2
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL+EG L KAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 419 KTTVAFSLKEGTADLCKALSIFAVRDIKVTKIESRPQRENPLRM 550
Score = 40.9 bits (83), Expect(3) = 6e-021
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -3 / +2
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLARE 740
+A + YGL+V+ E +QDD N TRF++L ++
Sbjct: 290 IAGREYGLEVVEEEMQDDSSNATRFLILTKK 382
Score = 28.6 bits (56), Expect(3) = 6e-021
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3 / +2
Query: 547 FDYLFYVDLEASMAD 503
F+Y+F+VDLEA AD
Sbjct: 593 FEYVFFVDLEAPAAD 637
>gb|CX646889.1|CX646889 COLD1_12_D10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D10_A029 3', mRNA sequence
Length = 814
Score = 68.9 bits (144), Expect(3) = 6e-021
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = -3 / +2
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL+EG L KAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 335 KTTVAFSLKEGTADLCKALSIFAVRDIKVTKIESRPQRENPLRM 466
Score = 40.9 bits (83), Expect(3) = 6e-021
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -3 / +2
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLARE 740
+A + YGL+V+ E +QDD N TRF++L ++
Sbjct: 206 IAGREYGLEVVEEEMQDDSSNATRFLILTKK 298
Score = 28.6 bits (56), Expect(3) = 6e-021
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3 / +2
Query: 547 FDYLFYVDLEASMAD 503
F+Y+F+VDLEA AD
Sbjct: 509 FEYVFFVDLEAPAAD 553
>gb|CF402449.1|CF402449 RTWW1_17_E05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_17_E05_A015 5', mRNA sequence
Length = 794
Score = 68.9 bits (144), Expect(3) = 6e-021
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = -3 / +2
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL+EG L KAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 476 KTTVAFSLKEGTADLCKALSIFAVRDIKVTKIESRPQRENPLRM 607
Score = 40.9 bits (83), Expect(3) = 6e-021
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -3 / +2
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLARE 740
+A + YGL+V+ E +QDD N TRF++L ++
Sbjct: 347 IAGREYGLEVVEEEMQDDSSNATRFLILTKK 439
Score = 28.6 bits (56), Expect(3) = 6e-021
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3 / +2
Query: 547 FDYLFYVDLEASMAD 503
F+Y+F+VDLEA AD
Sbjct: 650 FEYVFFVDLEAPAAD 694
>gb|CF401553.1|CF401553 RTWW1_13_E07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_13_E07_A015 5', mRNA sequence
Length = 659
Score = 68.9 bits (144), Expect(3) = 6e-021
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = -3 / +1
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRV 578
KT++ FSL+EG L KAL++FA+RDI +TKIESRP +E PLR+
Sbjct: 172 KTTVAFSLKEGTADLCKALSIFAVRDIKVTKIESRPQRENPLRM 303
Score = 40.9 bits (83), Expect(3) = 6e-021
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -3 / +1
Query: 832 LAAKLYGLDVLAENIQDDKDNVTRFMMLARE 740
+A + YGL+V+ E +QDD N TRF++L ++
Sbjct: 43 IAGREYGLEVVEEEMQDDSSNATRFLILTKK 135
Score = 28.6 bits (56), Expect(3) = 6e-021
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3 / +1
Query: 547 FDYLFYVDLEASMAD 503
F+Y+F+VDLEA AD
Sbjct: 346 FEYVFFVDLEAPAAD 390
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 439,634,066
Number of Sequences: 355925
Number of extensions: 5893446
Number of successful extensions: 30600
Number of sequences better than 1.0e-020: 54
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12724564220
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)