TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulf... 89 9e-049
gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus pota... 93 1e-048
gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus add... 93 4e-042
gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stresse... 80 1e-041
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 71 7e-036
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 66 2e-035
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 66 2e-035
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 71 5e-033
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 71 5e-033
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 71 5e-033
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 71 5e-033
gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus p... 71 5e-033
gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated wi... 71 5e-033
gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus... 64 8e-032
gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciat... 72 1e-026
gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late w... 76 2e-026
gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Plani... 64 1e-025
gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus adde... 64 3e-024
gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch ... 67 1e-023
gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch ... 69 1e-022
gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciat... 60 4e-022
gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library P... 64 5e-022
gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo li... 57 8e-021
>gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_29_B07_A029 3', mRNA sequence
Length = 688
Score = 89.0 bits (188), Expect(3) = 9e-049
Identities = 29/47 (61%), Positives = 40/47 (85%)
Frame = -2 / +2
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
+D I+ GAV+H+NGNMKPWLK+ M++YK+ W+ YV+YSHPL+QQC
Sbjct: 494 IDEQLIESGAVIHFNGNMKPWLKLAMKRYKAIWEMYVNYSHPLLQQC 634
Score = 77.1 bits (162), Expect(3) = 9e-049
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D TLWKLG+LPPGLL+FYGL E LD +WHVLGLGY
Sbjct: 380 DRTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGY 484
Score = 66.6 bits (139), Expect(3) = 9e-049
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERNV 755
WAFGMNV DLV W+N NVT YHYWQE+NV
Sbjct: 290 WAFGMNVFDLVAWKNANVTSRYHYWQEQNV 379
>gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C05_A029 5', mRNA sequence
Length = 912
Score = 92.7 bits (196), Expect(3) = 1e-048
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = -2 / -1
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
VD+ I+ GAVLHYNGNMKPWLK+ M +YKSFW+ YV+Y HP +Q+C
Sbjct: 333 VDMQLIESGAVLHYNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKC 193
Score = 76.2 bits (160), Expect(3) = 1e-048
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -2 / -1
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D TLWKLG+LPPGLL FYGL E LD +WH+LGLGY
Sbjct: 447 DRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGY 343
Score = 63.4 bits (132), Expect(3) = 1e-048
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -3 / -1
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERNV 755
WAFGMNV DLV W+ NVT YHYWQE+NV
Sbjct: 537 WAFGMNVFDLVAWKKLNVTSRYHYWQEQNV 448
Score = 53.8 bits (111), Expect(3) = 2e-021
Identities = 28/62 (45%), Positives = 36/62 (58%)
Frame = +1 / +2
Query: 460 LTKILMLIHINQRMKHC*IKGCE*ST*LSQKLLYFSIPILSHGFIFPL*CSTAPSLIVAR 639
+T+ M++ + M H GC+* T SQK LY I +HGF+FPL*C TAP I
Sbjct: 149 ITEEYMMLGQH*WMLHFCRNGCK*FTYFSQKDLYLFIASFNHGFMFPL*CKTAPLSISCM 328
Query: 640 ST 645
ST
Sbjct: 329 ST 334
Score = 43.2 bits (88), Expect(3) = 2e-021
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +3 / +2
Query: 756 TLRSCQ**YMPVTFLFLHSTRSSTFIPNA 842
T SCQ**Y VT F H+TRS+TFIP A
Sbjct: 449 TFCSCQ**YRLVTLSFFHATRSNTFIPKA 535
Score = 42.8 bits (87), Expect(3) = 2e-021
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +1 / +2
Query: 652 *PSPKTCHLGSNASTKP*KARSPGGKDPSFHRV 750
*PSP C S+ S +P*K PGGK PSF V
Sbjct: 344 *PSPSICQRRSSGSVRP*KVSKPGGKVPSFQSV 442
>gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C09_A029 5', mRNA sequence
Length = 822
Score = 92.7 bits (196), Expect(3) = 4e-042
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = -2 / -3
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
VD+ I+ GAVLHYNGNMKPWLK+ M +YKSFW+ YV+Y HP +Q+C
Sbjct: 643 VDMQLIESGAVLHYNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKC 503
Score = 76.2 bits (160), Expect(3) = 4e-042
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -2 / -3
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D TLWKLG+LPPGLL FYGL E LD +WH+LGLGY
Sbjct: 757 DRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGY 653
Score = 41.4 bits (84), Expect(3) = 4e-042
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3 / -3
Query: 817 LVEWRNKNVTGIYHYWQERNV 755
LV W+ NVT YHYWQE+NV
Sbjct: 820 LVAWKKLNVTSRYHYWQEQNV 758
>gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C09_A021 5', mRNA sequence
Length = 797
Score = 80.3 bits (169), Expect(3) = 1e-041
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = -2 / -3
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
+VD I AV+HYNGNMKPWL++ M KY+ +W Y+ Y HP +QQC
Sbjct: 549 SVDRLEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPFLQQC 406
Score = 70.7 bits (148), Expect(3) = 1e-041
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = -2 / -3
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D LWKLG+LPPGL+ FYGL LD WHVLGLGY
Sbjct: 660 DRVLWKLGTLPPGLITFYGLTHPLDKSWHVLGLGY 556
Score = 57.4 bits (119), Expect(3) = 1e-041
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = -3 / -3
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMNV DL EW+ +++TGIYH WQ N
Sbjct: 750 WAYGMNVFDLKEWKKQDITGIYHKWQNMN 664
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 70.7 bits (148), Expect(3) = 7e-036
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D LWKLG+LPPGL+ FYGL LD WHVLGLGY
Sbjct: 638 DRVLWKLGTLPPGLITFYGLTHPLDKSWHVLGLGY 742
Score = 61.1 bits (127), Expect(3) = 7e-036
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = -2 / +2
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYV 534
+VD I AV+HYNGNMKPWL++ M KY+ +W Y+
Sbjct: 749 SVDRLEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYI 862
Score = 57.4 bits (119), Expect(3) = 7e-036
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMNV DL EW+ +++TGIYH WQ N
Sbjct: 548 WAYGMNVFDLKEWKKQDITGIYHKWQNMN 634
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 65.7 bits (137), Expect(3) = 2e-035
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D LWKLG+LPPGL+ FY L LD WHVLGLGY
Sbjct: 191 DRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGY 295
Score = 64.3 bits (134), Expect(3) = 2e-035
Identities = 23/47 (48%), Positives = 28/47 (59%)
Frame = -2 / +2
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
VD I+ AV+HYNGNMKPWL I + KY+ +W YV Y C
Sbjct: 305 VDSTEIERAAVIHYNGNMKPWLDIAIPKYRHYWTKYVKYDXXXXXLC 445
Score = 57.9 bits (120), Expect(3) = 2e-035
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN+ DL EWR + +TGIYH WQ N
Sbjct: 101 WAYGMNIFDLEEWRKQGITGIYHQWQNLN 187
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 65.7 bits (137), Expect(3) = 2e-035
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D LWKLG+LPPGL+ FY L LD WHVLGLGY
Sbjct: 191 DRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGY 295
Score = 63.8 bits (133), Expect(3) = 2e-035
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = -2 / +2
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDY 528
VD I+ AV+HYNGNMKPWL I + KY+ +W YV Y
Sbjct: 305 VDSTEIERAAVIHYNGNMKPWLDIAIPKYRHYWTKYVKY 421
Score = 57.9 bits (120), Expect(3) = 2e-035
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN+ DL EWR + +TGIYH WQ N
Sbjct: 101 WAYGMNIFDLEEWRKQGITGIYHQWQNLN 187
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 71.2 bits (149), Expect(3) = 5e-033
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -2 / +2
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +Y+ W YVDY +Q C
Sbjct: 347 SISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 490
Score = 63.8 bits (133), Expect(3) = 5e-033
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ +Y + LD WHVLGLGY
Sbjct: 236 NRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 340
Score = 44.6 bits (91), Expect(3) = 5e-033
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN L WR + T YHYWQ N
Sbjct: 146 WAYGMNFFHLDAWRREKCTEEYHYWQNLN 232
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 71.2 bits (149), Expect(3) = 5e-033
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -2 / +2
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +Y+ W YVDY +Q C
Sbjct: 467 SISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 610
Score = 63.8 bits (133), Expect(3) = 5e-033
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ +Y + LD WHVLGLGY
Sbjct: 356 NRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 460
Score = 44.6 bits (91), Expect(3) = 5e-033
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN L WR + T YHYWQ N
Sbjct: 266 WAYGMNFFHLDAWRREKCTEEYHYWQNLN 352
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 71.2 bits (149), Expect(3) = 5e-033
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -2 / +3
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +Y+ W YVDY +Q C
Sbjct: 483 SISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 626
Score = 63.8 bits (133), Expect(3) = 5e-033
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / +3
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ +Y + LD WHVLGLGY
Sbjct: 372 NRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 476
Score = 44.6 bits (91), Expect(3) = 5e-033
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3 / +3
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN L WR + T YHYWQ N
Sbjct: 282 WAYGMNFFHLDAWRREKCTEEYHYWQNLN 368
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 71.2 bits (149), Expect(3) = 5e-033
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -2 / +1
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +Y+ W YVDY +Q C
Sbjct: 475 SISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 618
Score = 63.8 bits (133), Expect(3) = 5e-033
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / +1
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ +Y + LD WHVLGLGY
Sbjct: 364 NRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 468
Score = 44.6 bits (91), Expect(3) = 5e-033
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3 / +1
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN L WR + T YHYWQ N
Sbjct: 274 WAYGMNFFHLDAWRREKCTEEYHYWQNLN 360
>gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_A06_A029 3', mRNA sequence
Length = 710
Score = 71.2 bits (149), Expect(3) = 5e-033
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -2 / +3
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +Y+ W YVDY +Q C
Sbjct: 294 SISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 437
Score = 63.8 bits (133), Expect(3) = 5e-033
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / +3
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ +Y + LD WHVLGLGY
Sbjct: 183 NRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 287
Score = 44.6 bits (91), Expect(3) = 5e-033
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3 / +3
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN L WR + T YHYWQ N
Sbjct: 93 WAYGMNFFHLDAWRREKCTEEYHYWQNLN 179
>gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 3', mRNA sequence
Length = 702
Score = 71.2 bits (149), Expect(3) = 5e-033
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -2 / +2
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +Y+ W YVDY +Q C
Sbjct: 269 SISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 412
Score = 63.8 bits (133), Expect(3) = 5e-033
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ +Y + LD WHVLGLGY
Sbjct: 158 NRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 262
Score = 44.6 bits (91), Expect(3) = 5e-033
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN L WR + T YHYWQ N
Sbjct: 68 WAYGMNFFHLDAWRREKCTEEYHYWQNLN 154
>gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 3', mRNA sequence
Length = 659
Score = 63.8 bits (133), Expect(3) = 8e-032
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = -2 / +3
Query: 746 LWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
LW++G+LPP L+AF GLV +DP WH+LGLGY
Sbjct: 246 LWRMGTLPPALIAFNGLVHPIDPSWHMLGLGY 341
Score = 58.3 bits (121), Expect(3) = 8e-032
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = -2 / +3
Query: 641 DLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
+L +++ AV+HYNG KPWL I + + W YVD+S I++C
Sbjct: 354 NLDSVQSAAVIHYNGRAKPWLDIAFHELRPLWAKYVDFSDEFIKRC 491
Score = 53.3 bits (110), Expect(3) = 8e-032
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -3 / +3
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERNV 755
WA+GMN+LDL WR N+ YHYW ++N+
Sbjct: 141 WAYGMNILDLQAWRRTNIKETYHYWLKKNL 230
>gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E08, mRNA sequence
Length = 629
Score = 71.6 bits (150), Expect(3) = 1e-026
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = -2 / -1
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +Y+ W YVDY IQ C
Sbjct: 491 SISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMC 348
Score = 63.8 bits (133), Expect(3) = 1e-026
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / -1
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ +Y + LD WHVLGLGY
Sbjct: 602 NRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 498
Score = 22.1 bits (42), Expect(3) = 1e-026
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = -3 / -1
Query: 781 YHYWQERN 758
YHYWQ N
Sbjct: 629 YHYWQNLN 606
>gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV085_F11 5' similar to Arabidopsis thaliana
sequence At2g20807 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 732
Score = 76.2 bits (160), Expect(2) = 2e-026
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D TLWKLG+LPPGLL FYGL E LD +WH+LGLGY
Sbjct: 545 DRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGY 649
Score = 63.4 bits (132), Expect(2) = 2e-026
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERNV 755
WAFGMNV DLV W+ NVT YHYWQE+NV
Sbjct: 455 WAFGMNVFDLVAWKKLNVTSRYHYWQEQNV 544
>gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_093_C03 5' similar to Arabidopsis
thaliana sequence At3g25140 glycosyl transferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 326
Score = 63.8 bits (133), Expect(3) = 1e-025
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / +1
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ +Y + LD WHVLGLGY
Sbjct: 88 NRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGY 192
Score = 51.0 bits (105), Expect(3) = 1e-025
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2 / +1
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDY 528
++ + I+ V H+NGNMKPWL M +Y+ W Y Y
Sbjct: 199 SISMDEIRNAXVXHFNGNMKPWLDXXMNQYRDTWTKYXXY 318
Score = 39.6 bits (80), Expect(3) = 1e-025
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3 / +1
Query: 841 AFGMNVLDLVEWRNKNVTGIYHYWQERN 758
A+GMN L WR + T YHYWQ N
Sbjct: 1 AYGMNFFHLDAWRREKCTEEYHYWQNLN 84
>gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_F03_A029 5', mRNA sequence
Length = 764
Score = 64.3 bits (134), Expect(3) = 3e-024
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = -2 / -2
Query: 785 HISLLAGAQCDHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
H L + TLW+LG+LPP L+AF G V +DP WH+LGLGY
Sbjct: 646 HYWLKENLNSNLTLWRLGTLPPALIAFNGHVHPIDPSWHMLGLGY 512
Score = 63.4 bits (132), Expect(3) = 3e-024
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = -2 / -2
Query: 641 DLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
DL +++ AV+HYNG KPWL I + + FW Y++YS+ I+ C
Sbjct: 499 DLNNVRKAAVIHYNGQAKPWLDIAFPELRPFWTKYINYSNEFIKNC 362
Score = 22.1 bits (42), Expect(3) = 3e-024
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2 / -1
Query: 845 LGIWYERA*SG*MEEQECDRHISLLA 768
+GIW E * +E+ + ++SLLA
Sbjct: 713 MGIWNEHL*FASLEKDKHPGNLSLLA 636
>gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 5', mRNA sequence
Length = 716
Score = 67.0 bits (140), Expect(2) = 1e-023
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = -2 / +1
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NG MKPWL IGM +Y+ W YVDY +Q C
Sbjct: 109 SISMDEIRNAAVVHFNGFMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 252
Score = 62.9 bits (131), Expect(2) = 1e-023
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = -2 / +1
Query: 749 TLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
TLWKLG+LPPGL+ FY + LD WHV GLGY
Sbjct: 4 TLWKLGTLPPGLITFYKTTKPLDKSWHVFGLGY 102
>gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 3', mRNA sequence
Length = 690
Score = 69.3 bits (145), Expect(2) = 1e-022
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = -2 / +1
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +Y+ W YVD+ +Q C
Sbjct: 100 SISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDFDMEFVQMC 243
Score = 57.4 bits (119), Expect(2) = 1e-022
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = -2 / +1
Query: 743 WKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
WKLG+LPPGL+ +Y + LD WHVLG GY
Sbjct: 1 WKLGTLPPGLITYYKTTKPLDKSWHVLGFGY 93
>gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038D10, mRNA sequence
Length = 370
Score = 60.2 bits (125), Expect(3) = 4e-022
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -2 / +2
Query: 746 LWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
LW++G+LPP L+AF GLV +D WH+LGLGY
Sbjct: 62 LWRMGTLPPALIAFNGLVHPIDSSWHMLGLGY 157
Score = 58.3 bits (121), Expect(3) = 4e-022
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = -2 / +2
Query: 641 DLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
+L +++ AV+HYNG KPWL I + + W YVD+S I++C
Sbjct: 170 NLDSVQSAAVIHYNGRAKPWLDIAFHELRPLWAKYVDFSDEFIKRC 307
Score = 24.0 bits (46), Expect(3) = 4e-022
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -3 / +2
Query: 796 NVTGIYHYWQERNV 755
N+ YHYW ++N+
Sbjct: 5 NIKETYHYWLKKNL 46
>gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 522
Score = 63.8 bits (133), Expect(3) = 5e-022
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = -2 / +3
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
+D I++ VLHYNGN+KPWL+IG+ KYK +W Y+ + +C
Sbjct: 318 IDQLDIEKSPVLHYNGNLKPWLEIGINKYKPYWAKYLKQEGQFMLEC 458
Score = 39.6 bits (80), Expect(3) = 5e-022
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2 / +3
Query: 743 WKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
W+ G+LP L+ FY + L+ W +GLG+
Sbjct: 216 WRFGTLPASLITFYNMTHRLEDSWLSVGLGH 308
Score = 38.6 bits (78), Expect(3) = 5e-022
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3 / +3
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYW 770
W G+N++DL +WR +++T +Y W
Sbjct: 111 WMSGLNIIDLQQWRKQDLTKVYRRW 185
>gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFX37 3' end, mRNA sequence
Length = 812
Score = 57.4 bits (119), Expect(3) = 8e-021
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = -3 / +1
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMNV DL EW+ +++TGIYH WQ N
Sbjct: 556 WAYGMNVFDLKEWKKQDITGIYHKWQNMN 642
Score = 53.8 bits (111), Expect(3) = 8e-021
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = -2 / +1
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLG 660
D LWKLG+LPPGL+ FYGL LD W G
Sbjct: 646 DRVLWKLGTLPPGLITFYGLTHPLDKSWACAG 741
Score = 26.7 bits (52), Expect(3) = 8e-021
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2 / +2
Query: 647 TVDLATIKEGAVLHYNGN 594
+VD I AV+HYNGN
Sbjct: 758 SVDRLEIDNAAVVHYNGN 811
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 516,689,164
Number of Sequences: 355925
Number of extensions: 8034961
Number of successful extensions: 51196
Number of sequences better than 1.0e-020: 27
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12347140705
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)