TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.3
(824 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX253213.1|BX253213 BX253213 Pinus pinaster differenciat... 175 4e-043
gb|CF672623.1|CF672623 RTCNT1_64_H05.g1_A029 Root control P... 174 6e-043
gb|CO160201.1|CO160201 FLD1_19_A03.g1_A029 Root flooded Pin... 174 6e-043
gb|CV035712.1|CV035712 RTNACL1_42_A06.b1_A029 Roots plus ad... 174 6e-043
gb|CV035788.1|CV035788 RTNACL1_42_A06.g1_A029 Roots plus ad... 174 6e-043
gb|DR012508.1|DR012508 HEAT1_13_G02.b1_A029 Root at 37 C fo... 174 6e-043
gb|DR014767.1|DR014767 HEAT1_51_B06.g1_A029 Root at 37 C fo... 174 6e-043
gb|DR017755.1|DR017755 STRS1_18_G04.b1_A034 Shoot tip pitch... 174 6e-043
gb|DR017840.1|DR017840 STRS1_18_G04.g1_A034 Shoot tip pitch... 174 6e-043
gb|DR055871.1|DR055871 RTCA1_26_B02.g1_A029 Roots minus cal... 174 6e-043
gb|DR058721.1|DR058721 RTNIT1_13_B05.g1_A029 Roots minus ni... 174 6e-043
gb|DR089794.1|DR089794 RTAL1_10_G10.g1_A029 Roots plus adde... 174 6e-043
gb|DR091888.1|DR091888 RTAL1_24_D06.g1_A029 Roots plus adde... 174 6e-043
gb|DR385882.1|DR385882 RTHG1_11_A07.g1_A029 Roots plus adde... 174 6e-043
gb|DR682838.1|DR682838 EST1072913 Normalized pine embryo li... 174 6e-043
gb|DR683008.1|DR683008 EST1073083 Normalized pine embryo li... 174 6e-043
gb|DR683009.1|DR683009 EST1073084 Normalized pine embryo li... 174 6e-043
gb|DR688845.1|DR688845 EST1078931 Normalized pine embryo li... 174 6e-043
gb|DR694166.1|DR694166 EST1084256 Normalized pine embryo li... 174 6e-043
gb|DT631560.1|DT631560 EST1146491 Normalized pine embryo li... 174 6e-043
gb|BE187297.1|BE187297 NXNV_162_B12_F Nsf Xylem Normal wood... 171 4e-042
gb|BQ699182.1|BQ699182 NXRV120_E07_F NXRV (Nsf Xylem Root w... 171 8e-042
gb|DN609369.1|DN609369 EST962419 Subtracted pine embryo lib... 171 8e-042
gb|DT627731.1|DT627731 EST1156480 Subtracted pine embryo li... 171 8e-042
gb|BQ107356.1|BQ107356 NXLV092_F12_F NXLV (Nsf Xylem Late w... 170 1e-041
gb|AW011230.1|AW011230 ST18C07 Pine TriplEx shoot tip libra... 165 5e-040
gb|CO160128.1|CO160128 FLD1_19_A03.b1_A029 Root flooded Pin... 163 1e-039
gb|AW064721.1|AW064721 ST35A02 Pine TriplEx shoot tip libra... 163 2e-039
gb|BG039422.1|BG039422 NXSI_098_H06_F NXSI (Nsf Xylem Side ... 158 4e-038
gb|CF672548.1|CF672548 RTCNT1_64_H05.b1_A029 Root control P... 157 8e-038
gb|DR014618.1|DR014618 HEAT1_50_C10.g1_A029 Root at 37 C fo... 149 3e-035
gb|DR089709.1|DR089709 RTAL1_10_G10.b1_A029 Roots plus adde... 145 4e-034
gb|CX645893.1|CX645893 COLD1_5_H12.g1_A029 Root cold Pinus ... 142 4e-033
gb|BX253625.1|BX253625 BX253625 Pinus pinaster differenciat... 139 3e-032
gb|CO367704.1|CO367704 RTK1_36_B04.b1_A029 Roots minus pota... 133 1e-030
gb|BG318905.1|BG318905 NXPV_021_C11_F NXPV (Nsf Xylem Plani... 133 2e-030
gb|DR682839.1|DR682839 EST1072914 Normalized pine embryo li... 133 2e-030
gb|DR744595.1|DR744595 RTCU1_23_C03.g1_A029 Roots plus adde... 130 1e-029
gb|DR012588.1|DR012588 HEAT1_13_G02.g1_A029 Root at 37 C fo... 129 3e-029
gb|CX712484.1|CX712484 RTPQ1_2_G01.g2_A032 Roots treated wi... 128 4e-029
gb|CF475707.1|CF475707 RTWW2_11_G10.g1_A021 Well-watered lo... 128 5e-029
gb|CO199374.1|CO199374 GEO1_20_F02.g1_A029 Root gravitropis... 124 9e-028
gb|DR058638.1|DR058638 RTNIT1_13_B05.b1_A029 Roots minus ni... 123 1e-027
gb|DT630456.1|DT630456 EST1154868 Subtracted pine embryo li... 119 4e-027
gb|BX252707.1|BX252707 BX252707 Pinus pinaster differenciat... 119 2e-026
gb|DN632101.1|DN632101 EST982917 Subtracted pine embryo lib... 119 2e-026
>gb|BX253213.1|BX253213 BX253213 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP079H01 similar to POLYPOSIS LOCUS PROTEIN,
mRNA sequence
Length = 501
Score = 175 bits (376), Expect = 4e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 57 MGWGSFLKTVLYNIDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 236
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 237 LSFSRLLEWLPFWPYVKLIATCWLVLPVFNGAAYVYENFVRQMLLN 374
>gb|CF672623.1|CF672623 RTCNT1_64_H05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_64_H05_A029 5', mRNA sequence
Length = 729
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 114 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 293
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 294 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 431
>gb|CO160201.1|CO160201 FLD1_19_A03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_A03_A029 5', mRNA sequence
Length = 750
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +2
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 113 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 292
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 293 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 430
>gb|CV035712.1|CV035712 RTNACL1_42_A06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_42_A06_A029 3', mRNA sequence
Length = 822
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / -3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 469 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 290
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 289 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 152
>gb|CV035788.1|CV035788 RTNACL1_42_A06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_42_A06_A029 5', mRNA sequence
Length = 713
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / -3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 708 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 529
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 528 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 391
>gb|DR012508.1|DR012508 HEAT1_13_G02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_G02_A029 3', mRNA sequence
Length = 826
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 54 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 233
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 234 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 371
>gb|DR014767.1|DR014767 HEAT1_51_B06.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_B06_A029 5', mRNA sequence
Length = 870
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 201 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 380
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 381 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 518
>gb|DR017755.1|DR017755 STRS1_18_G04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_G04_A034 3', mRNA sequence
Length = 846
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +2
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 92 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 271
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 272 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 409
>gb|DR017840.1|DR017840 STRS1_18_G04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_G04_A034 5', mRNA sequence
Length = 718
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +2
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 218 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 397
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 398 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 535
>gb|DR055871.1|DR055871 RTCA1_26_B02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_26_B02_A029 5', mRNA sequence
Length = 667
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +1
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 64 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 243
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 244 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 381
>gb|DR058721.1|DR058721 RTNIT1_13_B05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_B05_A029 5', mRNA sequence
Length = 619
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 249 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 428
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 429 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 566
>gb|DR089794.1|DR089794 RTAL1_10_G10.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_G10_A029 5', mRNA sequence
Length = 665
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +1
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 97 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 276
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 277 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 414
>gb|DR091888.1|DR091888 RTAL1_24_D06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_D06_A029 5', mRNA sequence
Length = 720
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +1
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 163 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 342
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 343 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 480
>gb|DR385882.1|DR385882 RTHG1_11_A07.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_A07_A029 5', mRNA sequence
Length = 825
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 168 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 347
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 348 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 485
>gb|DR682838.1|DR682838 EST1072913 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAC56, mRNA sequence
Length = 895
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / -1
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 790 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 611
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 610 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 473
>gb|DR683008.1|DR683008 EST1073083 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD72, mRNA sequence
Length = 831
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / -2
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 758 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 579
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 578 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 441
>gb|DR683009.1|DR683009 EST1073084 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD72 3' end, mRNA sequence
Length = 687
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +1
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 313 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 492
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 493 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 630
>gb|DR688845.1|DR688845 EST1078931 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACB29 3' end, mRNA sequence
Length = 846
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 261 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 440
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 441 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 578
>gb|DR694166.1|DR694166 EST1084256 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE887 3' end, mRNA sequence
Length = 627
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +2
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 110 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 289
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 290 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 427
>gb|DT631560.1|DT631560 EST1146491 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFA13 3' end, mRNA sequence
Length = 800
Score = 174 bits (375), Expect = 6e-043
Identities = 66/106 (62%), Positives = 83/106 (78%)
Frame = -3 / +1
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 313 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 492
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 493 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 630
>gb|BE187297.1|BE187297 NXNV_162_B12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_162_B12 5' similar to Arabidopsis thaliana
sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 574
Score = 171 bits (369), Expect = 4e-042
Identities = 65/106 (61%), Positives = 82/106 (77%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 21 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 200
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F M +N
Sbjct: 201 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVXQMLLN 338
>gb|BQ699182.1|BQ699182 NXRV120_E07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV120_E07 5' similar to Arabidopsis thaliana
sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 524
Score = 171 bits (367), Expect = 8e-042
Identities = 65/106 (61%), Positives = 82/106 (77%)
Frame = -3 / +1
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L PLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 76 MGWGSFLKAVLYNLDIFAGPVVTLLXPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 255
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 256 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 393
>gb|DN609369.1|DN609369 EST962419 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAC05, mRNA sequence
Length = 635
Score = 171 bits (367), Expect = 8e-042
Identities = 64/103 (62%), Positives = 81/103 (78%)
Frame = -3 / +3
Query: 564 GSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTF 385
GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFEL+F
Sbjct: 276 GSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSF 455
Query: 384 APIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 456 SRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 584
>gb|DT627731.1|DT627731 EST1156480 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCQ04 5' end, mRNA sequence
Length = 638
Score = 171 bits (367), Expect = 8e-042
Identities = 64/103 (62%), Positives = 81/103 (78%)
Frame = -3 / -3
Query: 564 GSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTF 385
GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFEL+F
Sbjct: 363 GSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSF 184
Query: 384 APIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
+ ++EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 183 SRLLEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 55
>gb|BQ107356.1|BQ107356 NXLV092_F12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV092_F12 5' similar to Arabidopsis thaliana
sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 560
Score = 170 bits (366), Expect = 1e-041
Identities = 65/106 (61%), Positives = 82/106 (77%)
Frame = -3 / +1
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 118 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 297
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
L+F+ ++ WLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 298 LSFSRLL*WLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 435
>gb|AW011230.1|AW011230 ST18C07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18C07, mRNA sequence
Length = 533
Score = 165 bits (354), Expect = 5e-040
Identities = 62/105 (59%), Positives = 80/105 (76%)
Frame = -3 / +1
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 208 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 387
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFV 259
L+F+ ++EWLPFW Y KL C LVLP FNG YVY++ + M +
Sbjct: 388 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGAXYVYENXVKXMLL 522
>gb|CO160128.1|CO160128 FLD1_19_A03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_A03_A029 3', mRNA sequence
Length = 759
Score = 163 bits (351), Expect = 1e-039
Identities = 61/100 (61%), Positives = 78/100 (78%)
Frame = -3 / +1
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
LK + N D+L GP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFEL+F+ +
Sbjct: 1 LKAVLYNLDILXGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 180
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
+EWLPFW Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 181 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 300
>gb|AW064721.1|AW064721 ST35A02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST35A02, mRNA sequence
Length = 566
Score = 163 bits (350), Expect = 2e-039
Identities = 61/98 (62%), Positives = 77/98 (78%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 246 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 425
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDH 280
L+F+ ++EWLPFW Y KL C LVLP FNG YVY++
Sbjct: 426 LSFSRLLEWLPFWPYLKLIATCWLVLPVFNGATYVYEN 539
>gb|BG039422.1|BG039422 NXSI_098_H06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_098_H06 5' similar to Arabidopsis thaliana
sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 553
Score = 158 bits (340), Expect = 4e-038
Identities = 60/96 (62%), Positives = 74/96 (77%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DD QWLTYWV SFITLFE
Sbjct: 264 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDXQWLTYWVLYSFITLFE 443
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVY 286
L+F+ ++ WLPFW Y KL C LVLP FNG AYVY
Sbjct: 444 LSFSRLLXWLPFWPYLKLIATCWLVLPXFNGAAYVY 551
>gb|CF672548.1|CF672548 RTCNT1_64_H05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_64_H05_A029 3', mRNA sequence
Length = 765
Score = 157 bits (338), Expect = 8e-038
Identities = 58/92 (63%), Positives = 74/92 (80%)
Frame = -3 / +1
Query: 531 DVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWS 352
D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFEL+F+ ++EWLPFW
Sbjct: 4 DIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWP 183
Query: 351 YAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVN 256
Y KL C LVLP FNG AYVY++F R M +N
Sbjct: 184 YLKLIATCWLVLPVFNGAAYVYENFVRQMLLN 279
>gb|DR014618.1|DR014618 HEAT1_50_C10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_C10_A029 5', mRNA sequence
Length = 778
Score = 149 bits (319), Expect = 3e-035
Identities = 55/87 (63%), Positives = 70/87 (80%)
Frame = -3 / +3
Query: 516 PLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYAKLF 337
P+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFEL+F+ ++EWLPFW Y KL
Sbjct: 27 PVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYLKLI 206
Query: 336 FNCXLVLPWFNGXAYVYDHFXRPMFVN 256
C LVLP FNG AYVY++F R M +N
Sbjct: 207 ATCWLVLPVFNGAAYVYENFVRQMLLN 287
>gb|DR089709.1|DR089709 RTAL1_10_G10.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_G10_A029 3', mRNA sequence
Length = 712
Score = 145 bits (311), Expect = 4e-034
Identities = 54/85 (63%), Positives = 68/85 (80%)
Frame = -3 / +2
Query: 510 ISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYAKLFFN 331
++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFEL+F+ ++EWLPFW Y KL
Sbjct: 2 VTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYLKLIAT 181
Query: 330 CXLVLPWFNGXAYVYDHFXRPMFVN 256
C LVLP FNG AYVY++F R M +N
Sbjct: 182 CWLVLPVFNGAAYVYENFVRQMLLN 256
>gb|CX645893.1|CX645893 COLD1_5_H12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_5_H12_A029 5', mRNA sequence
Length = 583
Score = 142 bits (304), Expect = 4e-033
Identities = 51/98 (52%), Positives = 69/98 (70%)
Frame = -3 / +1
Query: 558 FLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAP 379
F +A +FD AGP++ L YPLYAS+RAIE+ + +DDQQWLTYW+ S ITLFEL+F
Sbjct: 25 FFGAIARHFDTFAGPVVMLLYPLYASIRAIESPSELDDQQWLTYWILYSLITLFELSFYK 204
Query: 378 IIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPM 265
++ W+P W Y KL + LV P FNG AY+Y+ + R +
Sbjct: 205 VLAWIPIWPYVKLVLSFWLVSPMFNGAAYIYEKYIRKL 318
>gb|BX253625.1|BX253625 BX253625 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP086B03 similar to POLYPOSIS LOCUS PROTEIN,
mRNA sequence
Length = 500
Score = 139 bits (298), Expect = 3e-032
Identities = 51/82 (62%), Positives = 65/82 (79%)
Frame = -3 / +2
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 251 MGWGSFLKTVLYNIDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 430
Query: 393 LTFAPIIEWLPFWSYAKLFFNC 328
L+F+ ++EWLPFW Y KL C
Sbjct: 431 LSFSRLLEWLPFWPYVKLIATC 496
>gb|CO367704.1|CO367704 RTK1_36_B04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_B04_A029 3', mRNA sequence
Length = 837
Score = 133 bits (286), Expect = 1e-030
Identities = 50/78 (64%), Positives = 62/78 (79%)
Frame = -3 / -2
Query: 489 YASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPW 310
Y+S+RAIE+ + +DDQQWLTYWV SFITLFEL+F+ ++EWLPFW Y KL C LVLP
Sbjct: 329 YSSIRAIESPSRLDDQQWLTYWVPYSFITLFELSFSRLLEWLPFWPYVKLIATCWLVLPV 150
Query: 309 FNGXAYVYDHFXRPMFVN 256
FNG AYVY++F R M +N
Sbjct: 149 FNGAAYVYENFVRQMLLN 96
>gb|BG318905.1|BG318905 NXPV_021_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_021_C11 5' similar to Arabidopsis
thaliana sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 503
Score = 133 bits (285), Expect = 2e-030
Identities = 53/89 (59%), Positives = 67/89 (75%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 234 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 413
Query: 393 LTFAPIIEWLPFWSYAKLFFNCXLVLPWF 307
L+F+ ++EWLP Y L C LVL F
Sbjct: 414 LSFSRLLEWLPXXXYLXLIATCXLVLXXF 500
>gb|DR682839.1|DR682839 EST1072914 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAC56 3' end, mRNA sequence
Length = 803
Score = 133 bits (284), Expect = 2e-030
Identities = 48/75 (64%), Positives = 63/75 (84%)
Frame = -3 / +2
Query: 564 GSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTF 385
GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFEL+F
Sbjct: 578 GSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSF 757
Query: 384 APIIEWLPFWSYAKL 340
+ ++EWLPFW+Y KL
Sbjct: 758 SRLLEWLPFWAYLKL 802
>gb|DR744595.1|DR744595 RTCU1_23_C03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_23_C03_A029 5', mRNA sequence
Length = 599
Score = 130 bits (279), Expect = 1e-029
Identities = 49/77 (63%), Positives = 61/77 (79%)
Frame = -3 / -2
Query: 486 ASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWF 307
+S+RAIE+ + +DDQQWLTYWV SFITLFEL+F+ ++EWLPFW Y KL C LVLP F
Sbjct: 598 SSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYLKLIATCWLVLPVF 419
Query: 306 NGXAYVYDHFXRPMFVN 256
NG AYVY++F R M +N
Sbjct: 418 NGAAYVYENFVRQMLLN 368
>gb|DR012588.1|DR012588 HEAT1_13_G02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_G02_A029 5', mRNA sequence
Length = 722
Score = 129 bits (276), Expect = 3e-029
Identities = 47/73 (64%), Positives = 61/73 (83%)
Frame = -3 / +3
Query: 573 MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFE 394
MG GSFLK + N D+ AGP+++L YPLY+S+RAIE+ + +DDQQWLTYWV SFITLFE
Sbjct: 504 MGWGSFLKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFE 683
Query: 393 LTFAPIIEWLPFW 355
L+F+ ++EWLPFW
Sbjct: 684 LSFSRLLEWLPFW 722
>gb|CX712484.1|CX712484 RTPQ1_2_G01.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_2_G01_A032 5', mRNA sequence
Length = 903
Score = 128 bits (275), Expect = 4e-029
Identities = 49/92 (53%), Positives = 64/92 (69%)
Frame = -3 / -1
Query: 525 LAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYA 346
+A P + L YPLYAS+RA+ + + +DDQQWLTYWV S ITLFELTF I+ W+P W Y
Sbjct: 846 VAWPTVMLIYPLYASIRAMXSPSELDDQQWLTYWVLYSLITLFELTFYKILAWIPIWPYV 667
Query: 345 KLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQ 250
KL LVLP FNG AY+Y+++ R V ++
Sbjct: 666 KLVLLFWLVLPMFNGAAYIYENYVRRFVVAKE 571
>gb|CF475707.1|CF475707 RTWW2_11_G10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_G10_A021 5', mRNA sequence
Length = 731
Score = 128 bits (274), Expect = 5e-029
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = -3 / -3
Query: 480 VRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNG 301
+RAIE+ + +DDQQWLTYWV SFITLFEL+F+ ++EWLPFW Y KL C LVLP FNG
Sbjct: 729 IRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYLKLIATCWLVLPVFNG 550
Query: 300 XAYVYDHFXRPMFVN 256
AYVY++F R M +N
Sbjct: 549 AAYVYENFVRQMLLN 505
>gb|CO199374.1|CO199374 GEO1_20_F02.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_20_F02_A029 5', mRNA sequence
Length = 660
Score = 124 bits (265), Expect = 9e-028
Identities = 47/73 (64%), Positives = 57/73 (78%)
Frame = -3 / -2
Query: 477 RAIETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGX 298
RAIE+ + +DDQQWLTYWV SFITLFEL+F+ ++EWLPFW Y KL C LVLP FNG
Sbjct: 659 RAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYLKLIATCWLVLPVFNGA 480
Query: 297 AYVYDHFXRPMFV 259
AYVY++F R M +
Sbjct: 479 AYVYENFVRQMLL 441
>gb|DR058638.1|DR058638 RTNIT1_13_B05.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_B05_A029 3', mRNA sequence
Length = 659
Score = 123 bits (264), Expect = 1e-027
Identities = 47/74 (63%), Positives = 57/74 (77%)
Frame = -3 / +1
Query: 477 RAIETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGX 298
RAIE+ + +DDQQWLTYWV SFITL EL+F+ ++EWLPFW Y KL C LVLP FNG
Sbjct: 1 RAIESPSRLDDQQWLTYWVLYSFITLXELSFSRLLEWLPFWPYLKLIATCWLVLPVFNGA 180
Query: 297 AYVYDHFXRPMFVN 256
AYVY++F R M +N
Sbjct: 181 AYVYENFVRQMLLN 222
>gb|DT630456.1|DT630456 EST1154868 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME915, mRNA sequence
Length = 830
Score = 119 bits (255), Expect(2) = 4e-027
Identities = 46/98 (46%), Positives = 61/98 (62%)
Frame = -3 / +2
Query: 570 GSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFEL 391
GS + + L GP + L YPLYAS+RAIE+ + VDD+QWLTYW+ SF+TL E+
Sbjct: 104 GSMGMYWTIVSYLQSLTGPGLMLLYPLYASIRAIESPSKVDDEQWLTYWILYSFLTLVEM 283
Query: 390 TFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHF 277
A + W+PFW KL F LVLP F G +++Y F
Sbjct: 284 AAATLFSWIPFWHPVKLAFIAWLVLPQFRGASFIYQRF 397
Score = 24.4 bits (47), Expect(2) = 4e-027
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3 / +1
Query: 822 GRPGRYAGDG 793
GRPGRY+G G
Sbjct: 7 GRPGRYSGRG 36
>gb|BX252707.1|BX252707 BX252707 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069D07 similar to POLYPOSIS LOCUS PROTEIN,
mRNA sequence
Length = 676
Score = 119 bits (255), Expect = 2e-026
Identities = 44/66 (66%), Positives = 52/66 (78%)
Frame = -3 / +2
Query: 453 VDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFX 274
+DDQQWLTYWV SFITLFEL+F+ ++EWLPFW Y KL C LVLP FNG AYVY++F
Sbjct: 11 LDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYVKLIATCWLVLPVFNGAAYVYENFV 190
Query: 273 RPMFVN 256
R M +N
Sbjct: 191 RQMLLN 208
>gb|DN632101.1|DN632101 EST982917 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACJ76, mRNA sequence
Length = 777
Score = 119 bits (255), Expect = 2e-026
Identities = 46/98 (46%), Positives = 61/98 (62%)
Frame = -3 / +1
Query: 570 GSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFEL 391
GS + + L GP + L YPLYAS+RAIE+ + VDD+QWLTYW+ SF+TL E+
Sbjct: 82 GSMGMYWTIVSYLQSLTGPGLMLLYPLYASIRAIESPSKVDDEQWLTYWILYSFLTLVEM 261
Query: 390 TFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHF 277
A + W+PFW KL F LVLP F G +++Y F
Sbjct: 262 AAATLFSWIPFWHPVKLAFIAWLVLPQFRGASFIYQRF 375
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 344,705,702
Number of Sequences: 355925
Number of extensions: 4832261
Number of successful extensions: 49624
Number of sequences better than 1.0e-020: 56
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11969717190
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)