TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950080.2.1
(687 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR052117.1|DR052117 RTCA1_2_B11.g1_A029 Roots minus calc... 264 1e-071
gb|DR052128.1|DR052128 RTCA1_2_C11.g1_A029 Roots minus calc... 264 1e-071
gb|DR052039.1|DR052039 RTCA1_2_B11.b1_A029 Roots minus calc... 264 1e-071
gb|DR052048.1|DR052048 RTCA1_2_C11.b1_A029 Roots minus calc... 264 1e-071
gb|CF477053.1|CF477053 RTWW3_5_G01.g1_A022 Well-watered lob... 264 1e-071
gb|CO165824.1|CO165824 FLD1_57_G09.b1_A029 Root flooded Pin... 264 1e-071
>gb|DR052117.1|DR052117 RTCA1_2_B11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_B11_A029 5', mRNA sequence
Length = 921
Score = 264 bits (571), Expect(2) = 1e-071
Identities = 99/140 (70%), Positives = 120/140 (85%)
Frame = +2 / +2
Query: 119 LRHVNIGDLVREKSLHDGWDADLECHVINEDLVCDELEDMMEEGGILVDYHGCDFFPERW 298
LRH+N+G+LV++K+LH+GWD + EC+++NEDLV DELE +M+EGG +VDYH CDFFPERW
Sbjct: 278 LRHINLGELVKQKNLHNGWDDEFECYILNEDLVNDELEGVMDEGGNIVDYHSCDFFPERW 457
Query: 299 FDLVVVLQTDNSILHDRLTGRGYMGSKLANNIECEIFQVLLEEARESYREDIVMPLRSDN 478
FD V VLQTDNS+L+DRLT RGYMG KL NNIECEIFQVLLEEA ESY +DI+M L+SD
Sbjct: 458 FDCVAVLQTDNSVLYDRLTNRGYMGQKLQNNIECEIFQVLLEEAHESYSKDIIMTLQSDT 637
Query: 479 VEDISRNVGALTDWVNNWRP 538
+EDISRNV L +WV NW P
Sbjct: 638 IEDISRNVDLLKEWVANWSP 697
Score = 116 bits (249), Expect(2) = 8e-031
Identities = 50/118 (42%), Positives = 79/118 (66%)
Frame = -3 / -3
Query: 535 SPIVYPVCQCTYVPTNILHVVTSQWHHDVLSVALPRLLEEHLEDFALYVVGELGTHVTSA 356
+PI P+ Q +P I + +T Q H +VL VAL R LE+HL+DF ++ EL +HVT
Sbjct: 694 TPICNPLFQQVNIPAYIFNCITLQSHDNVL*VALMRFLEQHLKDFTFNIILELLSHVTPI 515
Query: 355 RQAIMQN*VVSLEHNYEVKPTFWKEITSVVIY*YTTFFHHVLKLVAHQVLVDDMALEV 182
QAI+ + V+ L++ + +KP+ WKEI ++VI +T HH KL+ +QVLV+++AL++
Sbjct: 514 SQAII*DRVICLQNRHTIKPSLWKEIAAMVINYVSTLIHHAFKLIIYQVLVENVALKL 341
Score = 36.8 bits (74), Expect(2) = 8e-031
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1 / -1
Query: 192 HSRSASQPS*RLFSRTRSPMLTWRR 118
HS S+SQP R F T SP L WRR
Sbjct: 351 HSNSSSQPLCRFFCLTNSPRLMWRR 277
Score = 26.3 bits (51), Expect(2) = 1e-071
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2 / +2
Query: 41 RPNVLVXXXXXXXXXXXCSLLADAAGL 121
+PN+LV CSLLAD L
Sbjct: 194 KPNILVTGTPGTGKTTICSLLADDPNL 274
>gb|DR052128.1|DR052128 RTCA1_2_C11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_C11_A029 5', mRNA sequence
Length = 903
Score = 264 bits (571), Expect(2) = 1e-071
Identities = 99/140 (70%), Positives = 120/140 (85%)
Frame = +2 / +1
Query: 119 LRHVNIGDLVREKSLHDGWDADLECHVINEDLVCDELEDMMEEGGILVDYHGCDFFPERW 298
LRH+N+G+LV++K+LH+GWD + EC+++NEDLV DELE +M+EGG +VDYH CDFFPERW
Sbjct: 268 LRHINLGELVKQKNLHNGWDDEFECYILNEDLVNDELEGVMDEGGNIVDYHSCDFFPERW 447
Query: 299 FDLVVVLQTDNSILHDRLTGRGYMGSKLANNIECEIFQVLLEEARESYREDIVMPLRSDN 478
FD V VLQTDNS+L+DRLT RGYMG KL NNIECEIFQVLLEEA ESY +DI+M L+SD
Sbjct: 448 FDCVAVLQTDNSVLYDRLTNRGYMGQKLQNNIECEIFQVLLEEAHESYSKDIIMTLQSDT 627
Query: 479 VEDISRNVGALTDWVNNWRP 538
+EDISRNV L +WV NW P
Sbjct: 628 IEDISRNVDLLKEWVANWSP 687
Score = 116 bits (249), Expect(2) = 8e-031
Identities = 50/118 (42%), Positives = 79/118 (66%)
Frame = -3 / -1
Query: 535 SPIVYPVCQCTYVPTNILHVVTSQWHHDVLSVALPRLLEEHLEDFALYVVGELGTHVTSA 356
+PI P+ Q +P I + +T Q H +VL VAL R LE+HL+DF ++ EL +HVT
Sbjct: 684 TPICNPLFQQVNIPAYIFNCITLQSHDNVL*VALMRFLEQHLKDFTFNIILELLSHVTPI 505
Query: 355 RQAIMQN*VVSLEHNYEVKPTFWKEITSVVIY*YTTFFHHVLKLVAHQVLVDDMALEV 182
QAI+ + V+ L++ + +KP+ WKEI ++VI +T HH KL+ +QVLV+++AL++
Sbjct: 504 SQAII*DRVICLQNRHTIKPSLWKEIAAMVINYVSTLIHHAFKLIIYQVLVENVALKL 331
Score = 36.8 bits (74), Expect(2) = 8e-031
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1 / -2
Query: 192 HSRSASQPS*RLFSRTRSPMLTWRR 118
HS S+SQP R F T SP L WRR
Sbjct: 341 HSNSSSQPLCRFFCLTNSPRLMWRR 267
Score = 26.3 bits (51), Expect(2) = 1e-071
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2 / +1
Query: 41 RPNVLVXXXXXXXXXXXCSLLADAAGL 121
+PN+LV CSLLAD L
Sbjct: 184 KPNILVTGTPGTGKTTICSLLADDPNL 264
>gb|DR052039.1|DR052039 RTCA1_2_B11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_B11_A029 3', mRNA sequence
Length = 824
Score = 264 bits (571), Expect(2) = 1e-071
Identities = 99/140 (70%), Positives = 120/140 (85%)
Frame = +2 / +3
Query: 119 LRHVNIGDLVREKSLHDGWDADLECHVINEDLVCDELEDMMEEGGILVDYHGCDFFPERW 298
LRH+N+G+LV++K+LH+GWD + EC+++NEDLV DELE +M+EGG +VDYH CDFFPERW
Sbjct: 135 LRHINLGELVKQKNLHNGWDDEFECYILNEDLVNDELEGVMDEGGNIVDYHSCDFFPERW 314
Query: 299 FDLVVVLQTDNSILHDRLTGRGYMGSKLANNIECEIFQVLLEEARESYREDIVMPLRSDN 478
FD V VLQTDNS+L+DRLT RGYMG KL NNIECEIFQVLLEEA ESY +DI+M L+SD
Sbjct: 315 FDCVAVLQTDNSVLYDRLTNRGYMGQKLQNNIECEIFQVLLEEAHESYSKDIIMTLQSDT 494
Query: 479 VEDISRNVGALTDWVNNWRP 538
+EDISRNV L +WV NW P
Sbjct: 495 IEDISRNVDLLKEWVANWSP 554
Score = 116 bits (249), Expect(2) = 8e-031
Identities = 50/118 (42%), Positives = 79/118 (66%)
Frame = -3 / -1
Query: 535 SPIVYPVCQCTYVPTNILHVVTSQWHHDVLSVALPRLLEEHLEDFALYVVGELGTHVTSA 356
+PI P+ Q +P I + +T Q H +VL VAL R LE+HL+DF ++ EL +HVT
Sbjct: 551 TPICNPLFQQVNIPAYIFNCITLQSHDNVL*VALMRFLEQHLKDFTFNIILELLSHVTPI 372
Query: 355 RQAIMQN*VVSLEHNYEVKPTFWKEITSVVIY*YTTFFHHVLKLVAHQVLVDDMALEV 182
QAI+ + V+ L++ + +KP+ WKEI ++VI +T HH KL+ +QVLV+++AL++
Sbjct: 371 SQAII*DRVICLQNRHTIKPSLWKEIAAMVINYVSTLIHHAFKLIIYQVLVENVALKL 198
Score = 36.8 bits (74), Expect(2) = 8e-031
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1 / -2
Query: 192 HSRSASQPS*RLFSRTRSPMLTWRR 118
HS S+SQP R F T SP L WRR
Sbjct: 208 HSNSSSQPLCRFFCLTNSPRLMWRR 134
Score = 26.3 bits (51), Expect(2) = 1e-071
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2 / +3
Query: 41 RPNVLVXXXXXXXXXXXCSLLADAAGL 121
+PN+LV CSLLAD L
Sbjct: 51 KPNILVTGTPGTGKTTICSLLADDPNL 131
>gb|DR052048.1|DR052048 RTCA1_2_C11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_C11_A029 3', mRNA sequence
Length = 812
Score = 264 bits (571), Expect(2) = 1e-071
Identities = 99/140 (70%), Positives = 120/140 (85%)
Frame = +2 / +3
Query: 119 LRHVNIGDLVREKSLHDGWDADLECHVINEDLVCDELEDMMEEGGILVDYHGCDFFPERW 298
LRH+N+G+LV++K+LH+GWD + EC+++NEDLV DELE +M+EGG +VDYH CDFFPERW
Sbjct: 123 LRHINLGELVKQKNLHNGWDDEFECYILNEDLVNDELEGVMDEGGNIVDYHSCDFFPERW 302
Query: 299 FDLVVVLQTDNSILHDRLTGRGYMGSKLANNIECEIFQVLLEEARESYREDIVMPLRSDN 478
FD V VLQTDNS+L+DRLT RGYMG KL NNIECEIFQVLLEEA ESY +DI+M L+SD
Sbjct: 303 FDCVAVLQTDNSVLYDRLTNRGYMGQKLQNNIECEIFQVLLEEAHESYSKDIIMTLQSDT 482
Query: 479 VEDISRNVGALTDWVNNWRP 538
+EDISRNV L +WV NW P
Sbjct: 483 IEDISRNVDLLKEWVANWSP 542
Score = 116 bits (249), Expect(2) = 8e-031
Identities = 50/118 (42%), Positives = 79/118 (66%)
Frame = -3 / -1
Query: 535 SPIVYPVCQCTYVPTNILHVVTSQWHHDVLSVALPRLLEEHLEDFALYVVGELGTHVTSA 356
+PI P+ Q +P I + +T Q H +VL VAL R LE+HL+DF ++ EL +HVT
Sbjct: 539 TPICNPLFQQVNIPAYIFNCITLQSHDNVL*VALMRFLEQHLKDFTFNIILELLSHVTPI 360
Query: 355 RQAIMQN*VVSLEHNYEVKPTFWKEITSVVIY*YTTFFHHVLKLVAHQVLVDDMALEV 182
QAI+ + V+ L++ + +KP+ WKEI ++VI +T HH KL+ +QVLV+++AL++
Sbjct: 359 SQAII*DRVICLQNRHTIKPSLWKEIAAMVINYVSTLIHHAFKLIIYQVLVENVALKL 186
Score = 36.8 bits (74), Expect(2) = 8e-031
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1 / -2
Query: 192 HSRSASQPS*RLFSRTRSPMLTWRR 118
HS S+SQP R F T SP L WRR
Sbjct: 196 HSNSSSQPLCRFFCLTNSPRLMWRR 122
Score = 26.3 bits (51), Expect(2) = 1e-071
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2 / +3
Query: 41 RPNVLVXXXXXXXXXXXCSLLADAAGL 121
+PN+LV CSLLAD L
Sbjct: 39 KPNILVTGTPGTGKTTICSLLADDPNL 119
>gb|CF477053.1|CF477053 RTWW3_5_G01.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_G01_A022 5', mRNA sequence
Length = 750
Score = 264 bits (571), Expect(2) = 1e-071
Identities = 99/140 (70%), Positives = 120/140 (85%)
Frame = +2 / +1
Query: 119 LRHVNIGDLVREKSLHDGWDADLECHVINEDLVCDELEDMMEEGGILVDYHGCDFFPERW 298
LRH+N+G+LV++K+LH+GWD + EC+++NEDLV DELE +M+EGG +VDYH CDFFPERW
Sbjct: 253 LRHINLGELVKQKNLHNGWDDEFECYILNEDLVNDELEGVMDEGGNIVDYHSCDFFPERW 432
Query: 299 FDLVVVLQTDNSILHDRLTGRGYMGSKLANNIECEIFQVLLEEARESYREDIVMPLRSDN 478
FD V VLQTDNS+L+DRLT RGYMG KL NNIECEIFQVLLEEA ESY +DI+M L+SD
Sbjct: 433 FDCVAVLQTDNSVLYDRLTNRGYMGQKLQNNIECEIFQVLLEEAHESYSKDIIMTLQSDT 612
Query: 479 VEDISRNVGALTDWVNNWRP 538
+EDISRNV L +WV NW P
Sbjct: 613 IEDISRNVDLLKEWVANWSP 672
Score = 116 bits (249), Expect(2) = 8e-031
Identities = 50/118 (42%), Positives = 79/118 (66%)
Frame = -3 / -1
Query: 535 SPIVYPVCQCTYVPTNILHVVTSQWHHDVLSVALPRLLEEHLEDFALYVVGELGTHVTSA 356
+PI P+ Q +P I + +T Q H +VL VAL R LE+HL+DF ++ EL +HVT
Sbjct: 669 TPICNPLFQQVNIPAYIFNCITLQSHDNVL*VALMRFLEQHLKDFTFNIILELLSHVTPI 490
Query: 355 RQAIMQN*VVSLEHNYEVKPTFWKEITSVVIY*YTTFFHHVLKLVAHQVLVDDMALEV 182
QAI+ + V+ L++ + +KP+ WKEI ++VI +T HH KL+ +QVLV+++AL++
Sbjct: 489 SQAII*DRVICLQNRHTIKPSLWKEIAAMVINYVSTLIHHAFKLIIYQVLVENVALKL 316
Score = 36.8 bits (74), Expect(2) = 8e-031
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1 / -2
Query: 192 HSRSASQPS*RLFSRTRSPMLTWRR 118
HS S+SQP R F T SP L WRR
Sbjct: 326 HSNSSSQPLCRFFCLTNSPRLMWRR 252
Score = 26.3 bits (51), Expect(2) = 1e-071
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2 / +1
Query: 41 RPNVLVXXXXXXXXXXXCSLLADAAGL 121
+PN+LV CSLLAD L
Sbjct: 169 KPNILVTGTPGTGKTTICSLLADDPNL 249
>gb|CO165824.1|CO165824 FLD1_57_G09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_G09_A029 3', mRNA sequence
Length = 709
Score = 264 bits (571), Expect(2) = 1e-071
Identities = 99/140 (70%), Positives = 120/140 (85%)
Frame = +2 / -3
Query: 119 LRHVNIGDLVREKSLHDGWDADLECHVINEDLVCDELEDMMEEGGILVDYHGCDFFPERW 298
LRH+N+G+LV++K+LH+GWD + EC+++NEDLV DELE +M+EGG +VDYH CDFFPERW
Sbjct: 449 LRHINLGELVKQKNLHNGWDDEFECYILNEDLVNDELEGVMDEGGNIVDYHSCDFFPERW 270
Query: 299 FDLVVVLQTDNSILHDRLTGRGYMGSKLANNIECEIFQVLLEEARESYREDIVMPLRSDN 478
FD V VLQTDNS+L+DRLT RGYMG KL NNIECEIFQVLLEEA ESY +DI+M L+SD
Sbjct: 269 FDCVAVLQTDNSVLYDRLTNRGYMGQKLQNNIECEIFQVLLEEAHESYSKDIIMTLQSDT 90
Query: 479 VEDISRNVGALTDWVNNWRP 538
+EDISRNV L +WV NW P
Sbjct: 89 IEDISRNVDLLKEWVANWSP 30
Score = 116 bits (247), Expect(2) = 2e-030
Identities = 50/118 (42%), Positives = 79/118 (66%)
Frame = -3 / +3
Query: 535 SPIVYPVCQCTYVPTNILHVVTSQWHHDVLSVALPRLLEEHLEDFALYVVGELGTHVTSA 356
+PI P+ Q +P I + +T Q H +VL VAL LE+HL+DF ++ EL +HVT
Sbjct: 33 TPICNPLFQQVNIPAYIFNCITLQSHDNVL*VALMCFLEQHLKDFTFNIILELLSHVTPI 212
Query: 355 RQAIMQN*VVSLEHNYEVKPTFWKEITSVVIY*YTTFFHHVLKLVAHQVLVDDMALEV 182
RQAI+ + V+ L++ + +KP+ WKEI ++VI +T HH KL+ +QVLV+++AL++
Sbjct: 213 RQAII*DRVICLQNRHTIKPSLWKEIAAMVINYVSTLIHHAFKLIIYQVLVENVALKL 386
Score = 36.8 bits (74), Expect(2) = 2e-030
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1 / +1
Query: 192 HSRSASQPS*RLFSRTRSPMLTWRR 118
HS S+SQP R F T SP L WRR
Sbjct: 376 HSNSSSQPLCRFFCLTNSPRLMWRR 450
Score = 26.3 bits (51), Expect(2) = 1e-071
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2 / -3
Query: 41 RPNVLVXXXXXXXXXXXCSLLADAAGL 121
+PN+LV CSLLAD L
Sbjct: 533 KPNILVTGTPGTGKTTICSLLADDPNL 453
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 299,768,490
Number of Sequences: 355925
Number of extensions: 3797989
Number of successful extensions: 35982
Number of sequences better than 1.0e-020: 6
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9489505520
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)