TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2943856.2.2
         (661 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR014350.1|DR014350  HEAT1_49_A07.b1_A029 Root at 37 C fo...   103   1e-021
gb|CV034926.1|CV034926  RTNACL1_12_B09.g1_A029 Roots plus ad...   102   2e-021
gb|DR023194.1|DR023194  STRS1_56_C06.b1_A034 Shoot tip pitch...   102   2e-021

>gb|DR014350.1|DR014350 HEAT1_49_A07.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
           HEAT1_49_A07_A029 3', mRNA sequence
          Length = 879

 Score =  103 bits (219), Expect = 1e-021
 Identities = 39/59 (66%), Positives = 48/59 (81%)
 Frame = +3 / +2

                                                                      
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEM 293
           ++LR L+D S+VESFG GGK CI +R YP++A+GKDAHLYVFNNG   VT + LTAWEM
Sbjct: 242 LSLRVLVDHSIVESFGEGGKACITARAYPTLAIGKDAHLYVFNNGTSTVTANKLTAWEM 418



>gb|CV034926.1|CV034926 RTNACL1_12_B09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
           RTNACL1_12_B09_A029 5', mRNA sequence
          Length = 611

 Score =  102 bits (218), Expect = 2e-021
 Identities = 39/59 (66%), Positives = 47/59 (79%)
 Frame = +3 / +3

                                                                      
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEM 293
           ++LR L+D S+VESFG GGK CI +R YP++A+GKDAHLY FNNG   VT S LTAWEM
Sbjct: 429 LSLRVLVDHSIVESFGEGGKACITARAYPTLAIGKDAHLYAFNNGTSTVTASKLTAWEM 605



>gb|DR023194.1|DR023194 STRS1_56_C06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_56_C06_A034 3', mRNA sequence
          Length = 763

 Score =  102 bits (218), Expect = 2e-021
 Identities = 39/59 (66%), Positives = 47/59 (79%)
 Frame = +3 / +3

                                                                      
Query: 117 ITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEM 293
           ++LR L+D S+VESFG GGK CI +R YP++A+GKDAHLY FNNG   VT S LTAWEM
Sbjct: 108 LSLRVLVDHSIVESFGEGGKACITARAYPTLAIGKDAHLYAFNNGTSTVTASKLTAWEM 284



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 283,504,420
Number of Sequences: 355925
Number of extensions: 3458437
Number of successful extensions: 31378
Number of sequences better than 1.0e-020: 4
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9004246715
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)