TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2850725.2.1
(847 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism... 96 3e-027
gb|U39301.1|PTU39301 Pinus taeda xylem caffeic acid O-methy... 95 5e-026
gb|CF390447.1|CF390447 RTDR2_19_C10.g1_A021 Loblolly pine r... 93 2e-025
gb|DR385848.1|DR385848 RTHG1_11_F05.b1_A029 Roots plus adde... 93 2e-025
gb|CF478857.1|CF478857 RTWW3_15_E06.g1_A022 Well-watered lo... 93 2e-025
gb|CF387289.1|CF387289 RTDR1_12_B04.b1_A015 Loblolly pine r... 93 2e-025
gb|CF398420.1|CF398420 RTDS3_12_G12.g1_A022 Drought-stresse... 93 2e-025
gb|CF665309.1|CF665309 RTCNT1_15_E12.b1_A029 Root control P... 93 2e-025
gb|U70873.1|PRU70873 Pinus radiata O-methyltransferase (omt... 92 3e-025
gb|CF664309.1|CF664309 RTCNT1_9_A12.b1_A029 Root control Pi... 90 2e-024
gb|CF665472.1|CF665472 RTCNT1_16_E12.b1_A029 Root control P... 93 7e-023
gb|CX652953.1|CX652953 COLD1_62_B07.g1_A029 Root cold Pinus... 93 1e-022
gb|CF385489.1|CF385489 RTDR1_4_C03.b1_A015 Loblolly pine ro... 78 1e-022
gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clon... 91 6e-022
gb|DR161217.1|DR161217 RTFE1_10_C01.g1_A029 Roots minus iro... 78 6e-021
gb|CF385119.1|CF385119 RTDR1_2_H01.b1_A015 Loblolly pine ro... 78 6e-021
>gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_B10_A029 5', mRNA sequence
Length = 777
Score = 96.4 bits (204), Expect(3) = 3e-027
Identities = 37/79 (46%), Positives = 50/79 (63%)
Frame = -1 / -1
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P IK DLP + P V++VGGDMF+S+P + +K ++H
Sbjct: 642 GTGTAVAEIVRAYPSIKGINYDLPHVVSTAPHLTGVDHVGGDMFESVPMGDAIFMKWIMH 463
Query: 652 HWSDEDCVKILANCRKAIP 596
W DEDC+KIL NCRKAIP
Sbjct: 462 DWDDEDCIKILKNCRKAIP 406
Score = 39.1 bits (79), Expect(3) = 3e-027
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1 / -1
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ L+ ++GF DY ++ + V+E +P
Sbjct: 270 GGKERTEEEWKKLLWESGFGDYNIIDIPALQSVIEAFP 157
Score = 24.4 bits (47), Expect(3) = 3e-027
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / -1
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 399 GKVIIVDVVLDADEG 355
>gb|U39301.1|PTU39301 Pinus taeda xylem caffeic acid O-methyltransferase (COMT-1) mRNA,
partial cds
Length = 1279
Score = 95.0 bits (201), Expect(3) = 5e-026
Identities = 35/79 (44%), Positives = 51/79 (64%)
Frame = -1 / +1
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I+ DLP + + V +VGGDMF+++P A + +K ++H
Sbjct: 685 GTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTADAIFMKWIMH 864
Query: 652 HWSDEDCVKILANCRKAIP 596
W+DEDC+KIL NCRKAIP
Sbjct: 865 DWNDEDCIKILKNCRKAIP 921
Score = 36.3 bits (73), Expect(3) = 5e-026
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +1
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 1057 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 1170
Score = 24.4 bits (47), Expect(3) = 5e-026
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 928 GKVIIVDVVLDADQG 972
>gb|CF390447.1|CF390447 RTDR2_19_C10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_C10_A021 5', mRNA
sequence
Length = 847
Score = 93.2 bits (197), Expect(3) = 2e-025
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = -1 / +1
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I+ DLP + + V +VGGDMF+++P + +K ++H
Sbjct: 271 GTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMH 450
Query: 652 HWSDEDCVKILANCRKAIP 596
W+DEDC+KIL NCRKAIP
Sbjct: 451 DWNDEDCIKILKNCRKAIP 507
Score = 36.3 bits (73), Expect(3) = 2e-025
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +1
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 643 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 756
Score = 24.4 bits (47), Expect(3) = 2e-025
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 514 GKVIIVDVVLDADQG 558
>gb|DR385848.1|DR385848 RTHG1_11_F05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_F05_A029 3', mRNA sequence
Length = 757
Score = 93.2 bits (197), Expect(3) = 2e-025
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = -1 / +3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I+ DLP + + V +VGGDMF+++P + +K ++H
Sbjct: 198 GTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMH 377
Query: 652 HWSDEDCVKILANCRKAIP 596
W+DEDC+KIL NCRKAIP
Sbjct: 378 DWNDEDCIKILKNCRKAIP 434
Score = 36.3 bits (73), Expect(3) = 2e-025
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +3
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 570 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 683
Score = 24.4 bits (47), Expect(3) = 2e-025
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +3
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 441 GKVIIVDVVLDADQG 485
>gb|CF478857.1|CF478857 RTWW3_15_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_15_E06_A022 5', mRNA sequence
Length = 662
Score = 93.2 bits (197), Expect(3) = 2e-025
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = -1 / -3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I+ DLP + + V +VGGDMF+++P + +K ++H
Sbjct: 561 GTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMH 382
Query: 652 HWSDEDCVKILANCRKAIP 596
W+DEDC+KIL NCRKAIP
Sbjct: 381 DWNDEDCIKILKNCRKAIP 325
Score = 36.3 bits (73), Expect(3) = 2e-025
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / -3
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 189 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 76
Score = 24.4 bits (47), Expect(3) = 2e-025
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / -3
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 318 GKVIIVDVVLDADQG 274
>gb|CF387289.1|CF387289 RTDR1_12_B04.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_B04_A015 3', mRNA
sequence
Length = 641
Score = 93.2 bits (197), Expect(3) = 2e-025
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = -1 / +3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I+ DLP + + V +VGGDMF+++P + +K ++H
Sbjct: 84 GTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMH 263
Query: 652 HWSDEDCVKILANCRKAIP 596
W+DEDC+KIL NCRKAIP
Sbjct: 264 DWNDEDCIKILKNCRKAIP 320
Score = 36.3 bits (73), Expect(3) = 2e-025
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +3
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 456 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 569
Score = 24.4 bits (47), Expect(3) = 2e-025
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +3
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 327 GKVIIVDVVLDADQG 371
>gb|CF398420.1|CF398420 RTDS3_12_G12.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_G12_A022 5', mRNA sequence
Length = 609
Score = 93.2 bits (197), Expect(3) = 2e-025
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = -1 / +3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I+ DLP + + V +VGGDMF+++P + +K ++H
Sbjct: 72 GTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMH 251
Query: 652 HWSDEDCVKILANCRKAIP 596
W+DEDC+KIL NCRKAIP
Sbjct: 252 DWNDEDCIKILKNCRKAIP 308
Score = 36.3 bits (73), Expect(3) = 2e-025
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +3
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 444 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 557
Score = 24.4 bits (47), Expect(3) = 2e-025
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +3
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 315 GKVIIVDVVLDADQG 359
>gb|CF665309.1|CF665309 RTCNT1_15_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_E12_A029 3', mRNA sequence
Length = 592
Score = 93.2 bits (197), Expect(3) = 2e-025
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = -1 / +1
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I+ DLP + + V +VGGDMF+++P + +K ++H
Sbjct: 49 GTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMH 228
Query: 652 HWSDEDCVKILANCRKAIP 596
W+DEDC+KIL NCRKAIP
Sbjct: 229 DWNDEDCIKILKNCRKAIP 285
Score = 36.3 bits (73), Expect(3) = 2e-025
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +1
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 421 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 534
Score = 24.4 bits (47), Expect(3) = 2e-025
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 292 GKVIIVDVVLDADQG 336
>gb|U70873.1|PRU70873 Pinus radiata O-methyltransferase (omt) mRNA, complete cds
Length = 1421
Score = 91.8 bits (194), Expect(3) = 3e-025
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = -1 / +2
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I DLP + + V +VGGDMF+++P + +K ++H
Sbjct: 692 GTGTAVAEIVRAYPFITGINYDLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMH 871
Query: 652 HWSDEDCVKILANCRKAIP 596
W+DEDC+KIL NCRKAIP
Sbjct: 872 DWNDEDCIKILKNCRKAIP 928
Score = 36.8 bits (74), Expect(3) = 3e-025
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +2
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 1064 GGKERSEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 1177
Score = 24.4 bits (47), Expect(3) = 3e-025
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +2
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 935 GKVIIVDVVLDADQG 979
>gb|CF664309.1|CF664309 RTCNT1_9_A12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_A12_A029 3', mRNA sequence
Length = 649
Score = 89.5 bits (189), Expect(3) = 2e-024
Identities = 33/79 (41%), Positives = 50/79 (63%)
Frame = -1 / +1
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT+ + +A+P I+ DLP + + V +VGGDMF+++P + +K ++H
Sbjct: 49 GTGTSVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMH 228
Query: 652 HWSDEDCVKILANCRKAIP 596
W+ EDC+KIL NCRKAIP
Sbjct: 229 DWNVEDCIKILQNCRKAIP 285
Score = 36.8 bits (74), Expect(3) = 2e-024
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +1
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 421 GGKERSEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 534
Score = 24.4 bits (47), Expect(3) = 2e-024
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 292 GKVIIVDVVLDADQG 336
>gb|CF665472.1|CF665472 RTCNT1_16_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_E12_A029 3', mRNA sequence
Length = 597
Score = 93.2 bits (197), Expect(2) = 7e-023
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = -1 / +1
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I+ DLP + + V +VGGDMF+++P + +K ++H
Sbjct: 49 GTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMH 228
Query: 652 HWSDEDCVKILANCRKAIP 596
W+DEDC+KIL NCRKAIP
Sbjct: 229 DWNDEDCIKILKNCRKAIP 285
Score = 36.3 bits (73), Expect(2) = 7e-023
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +3
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 426 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 539
>gb|CX652953.1|CX652953 COLD1_62_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_B07_A029 5', mRNA sequence
Length = 828
Score = 93.2 bits (197), Expect(2) = 1e-022
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = -1 / -3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I+ DLP + + V +VGGDMF+++P + +K ++H
Sbjct: 553 GTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTGDAIFMKWIMH 374
Query: 652 HWSDEDCVKILANCRKAIP 596
W+DEDC+KIL NCRKAIP
Sbjct: 373 DWNDEDCIKILKNCRKAIP 317
Score = 36.3 bits (73), Expect(2) = 1e-022
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / -3
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 181 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 68
>gb|CF385489.1|CF385489 RTDR1_4_C03.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_4_C03_A015 3', mRNA
sequence
Length = 649
Score = 77.6 bits (163), Expect(4) = 1e-022
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1 / +1
Query: 727 VNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCVKILANCRKAIP 596
V +VGGDMF+++P + +K ++H W+DEDC+KIL NCRKAIP
Sbjct: 190 VQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 321
Score = 36.3 bits (73), Expect(4) = 1e-022
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +1
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 457 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 570
Score = 24.4 bits (47), Expect(4) = 1e-022
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 328 GKVIIVDVVLDADQG 372
Score = 22.6 bits (43), Expect(4) = 1e-022
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1 / +3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLP 761
G GT + +A+P I+ DLP
Sbjct: 84 GTGTAVAEIVRAYPFIRGINYDLP 155
>gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clone RS16A04, mRNA sequence
Length = 591
Score = 90.9 bits (192), Expect(2) = 6e-022
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = -1 / +3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +A+P I+ DLP + P V ++GGDMF+++P A + +K ++H
Sbjct: 69 GTGTAIAEIVRAYPSIRGINYDLPHVVATAPHLPGVEHMGGDMFETVPSADAIFMKWIMH 248
Query: 652 HWSDEDCVKILANCRKAIP 596
W DEDC+KIL +CRKAIP
Sbjct: 249 DWGDEDCIKILKSCRKAIP 305
Score = 35.4 bits (71), Expect(2) = 6e-022
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -1 / +3
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GF YK++ + V+E +P
Sbjct: 453 GGKERTEEEWKKILSEGGFHCYKIITIPDFQSVIEAFP 566
>gb|DR161217.1|DR161217 RTFE1_10_C01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_C01_A029 5', mRNA sequence
Length = 784
Score = 77.6 bits (163), Expect(3) = 6e-021
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1 / +1
Query: 727 VNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCVKILANCRKAIP 596
V +VGGDMF+++P + +K ++H W+DEDC+KIL NCRKAIP
Sbjct: 16 VQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 147
Score = 36.3 bits (73), Expect(3) = 6e-021
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +1
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 283 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 396
Score = 24.4 bits (47), Expect(3) = 6e-021
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 154 GKVIIVDVVLDADQG 198
>gb|CF385119.1|CF385119 RTDR1_2_H01.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_H01_A015 3', mRNA
sequence
Length = 491
Score = 77.6 bits (163), Expect(3) = 6e-021
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1 / +2
Query: 727 VNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCVKILANCRKAIP 596
V +VGGDMF+++P + +K ++H W+DEDC+KIL NCRKAIP
Sbjct: 8 VQHVGGDMFETVPTGDAIFMKWIMHDWNDEDCIKILKNCRKAIP 139
Score = 36.3 bits (73), Expect(3) = 6e-021
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1 / +2
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ ++ + GFS Y +++ + V+E +P
Sbjct: 275 GGKERTEKEWKRILLEGGFSRYNIIEIPALQSVIEAFP 388
Score = 24.4 bits (47), Expect(3) = 6e-021
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +2
Query: 580 GKVVIADIILDPASG 536
GKV+I D++LD G
Sbjct: 146 GKVIIVDVVLDADQG 190
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 484,460,527
Number of Sequences: 355925
Number of extensions: 7158926
Number of successful extensions: 43237
Number of sequences better than 1.0e-020: 17
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12347140705
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)