TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2835489.2.1
(885 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF475218.1|CF475218 RTWW2_14_H06.g1_A021 Well-watered lo... 266 2e-093
gb|DR682125.1|DR682125 EST1072200 Normalized pine embryo li... 235 1e-089
gb|CF671079.1|CF671079 RTCNT1_54_C10.g1_A029 Root control P... 247 2e-088
gb|DR024206.1|DR024206 STRS1_63_B11.b1_A034 Shoot tip pitch... 232 6e-088
gb|DR099434.1|DR099434 STRR1_55_C05.g1_A033 Stem Response R... 261 3e-079
gb|DR099170.1|DR099170 STRR1_53_D05.g1_A033 Stem Response R... 261 9e-075
gb|CO363132.1|CO363132 RTK1_7_G05.g1_A029 Roots minus potas... 182 1e-071
gb|DR024240.1|DR024240 STRS1_63_B11.g1_A034 Shoot tip pitch... 260 2e-070
gb|DR056258.1|DR056258 RTCA1_29_C09.b1_A029 Roots minus cal... 177 2e-069
gb|CO162180.1|CO162180 FLD1_33_D11.g1_A029 Root flooded Pin... 168 2e-067
dbj|BD224350.1| Materials and methods for the modification ... 238 4e-062
dbj|BD224413.1| Materials and methods for the modification ... 238 4e-062
gb|CF671009.1|CF671009 RTCNT1_54_C10.b1_A029 Root control P... 144 4e-060
gb|DR694469.1|DR694469 EST1084561 Normalized pine embryo li... 218 5e-056
gb|DR055806.1|DR055806 RTCA1_26_B12.b1_A029 Roots minus cal... 121 3e-054
gb|DT638708.1|DT638708 EST1153639 Normalized pine embryo li... 180 7e-054
gb|DR169238.1|DR169238 RTPHOS1_31_B02.b1_A029 Roots minus p... 117 4e-052
gb|DR018345.1|DR018345 STRS1_22_G03.b1_A034 Shoot tip pitch... 112 1e-051
gb|DR018410.1|DR018410 STRS1_22_G03.g1_A034 Shoot tip pitch... 171 2e-050
gb|BF516660.1|BF516660 NXSI_001_G06_F NXSI (Nsf Xylem Side ... 198 4e-050
gb|CF666460.1|CF666460 RTCNT1_23_A10.g1_A029 Root control P... 196 2e-049
gb|DR100370.1|DR100370 STRR1_63_D08.g1_A033 Stem Response R... 136 2e-049
gb|BE762088.1|BE762088 NXCI_076_H01_F NXCI (Nsf Xylem Compr... 179 3e-044
gb|DR099098.1|DR099098 STRR1_53_D05.b1_A033 Stem Response R... 109 1e-043
gb|BX680507.1|BX680507 BX680507 RS Pinus pinaster cDNA clon... 177 1e-043
gb|DR099363.1|DR099363 STRR1_55_C05.b1_A033 Stem Response R... 109 1e-042
gb|DR068751.1|DR068751 RTDK1_2_E04.g1_A029 Roots, dark Pinu... 171 4e-042
gb|AW754572.1|AW754572 PC03H01 Pine TriplEx pollen cone lib... 111 7e-042
gb|DR169308.1|DR169308 RTPHOS1_31_B02.g1_A029 Roots minus p... 156 7e-042
gb|AW290744.1|AW290744 NXNV046D07F Nsf Xylem Normal wood Ve... 96 2e-034
gb|CD027404.1|CD027404 NXNV046D07 Nsf Xylem Normal wood Ver... 96 2e-034
gb|CF666393.1|CF666393 RTCNT1_23_A10.b1_A029 Root control P... 108 7e-030
gb|DR068670.1|DR068670 RTDK1_2_E04.b1_A029 Roots, dark Pinu... 105 9e-029
gb|CO162092.1|CO162092 FLD1_33_D11.b1_A029 Root flooded Pin... 108 2e-025
gb|BF518339.1|BF518339 NXSI_038_B12_F NXSI (Nsf Xylem Side ... 94 1e-024
gb|AW064907.1|AW064907 ST37C08 Pine TriplEx shoot tip libra... 109 3e-023
>gb|CF475218.1|CF475218 RTWW2_14_H06.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_H06_A021 5', mRNA sequence
Length = 777
Score = 266 bits (576), Expect(2) = 2e-093
Identities = 114/184 (61%), Positives = 138/184 (75%)
Frame = -3 / +3
Query: 871 RRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLA 692
RRILRVKF G+FEHP ++ SL++ +G K HR LAREAVRKSLVLLKNGK +KP LPL
Sbjct: 39 RRILRVKFTMGLFEHPMANPSLVNQLGNKVHRELAREAVRKSLVLLKNGKSASKPLLPLN 218
Query: 691 KDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCP 512
K+A +ILVAGTHAD++GYQCGGWTI W G SG T GT+ILEAI+ V TEVVY++ P
Sbjct: 219 KNAAKILVAGTHADNLGYQCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVYQENP 398
Query: 511 TEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRP 332
+E GFSYA+V+VGE PYAE GD +L+IP G+D I V + LVI+ISGRP
Sbjct: 399 DAKYVEGQGFSYAIVLVGEAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILISGRP 578
Query: 331 LIIE 320
L+IE
Sbjct: 579 LVIE 590
Score = 160 bits (344), Expect(2) = 1e-054
Identities = 88/182 (48%), Positives = 106/182 (58%)
Frame = +3 / -3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
SI +GLPDI ITR T +I S P GI++ LSP SA G SPT T A ENP S
Sbjct: 589 SITSGLPDIKITRHFTEPHTFLIVSAPPKGIVKLRLSPNVSA*GASPTRTMAYENPCPST 410
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSIL 680
+ G TTSV T +AS ++VP V FPL+PC IV PPH* P SA VPAT I
Sbjct: 409 YFASGFS**TTSVEGLTVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIF 230
Query: 681 FASLANGRNGLF*SLPFFRSTKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTL 860
A L G GL PFF ST+D TAS A++ C+L P+ +R GCS +P +N TL
Sbjct: 229 AAFLFKGSKGLLADFPFFNSTRDFLTASLANSLCTLLPSWLTRLGLAMGCSKSPMVNFTL 50
Query: 861 RI 866
+I
Sbjct: 49 KI 44
Score = 96.8 bits (205), Expect(2) = 2e-093
Identities = 37/60 (61%), Positives = 45/60 (75%)
Frame = -3 / +3
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L I+A VAAWLPG+ G G+TD +FGD F G L TW KSVDQLP++ GD +YDPLFP+
Sbjct: 597 LPLIDAFVAAWLPGTXGQGVTDVIFGDQGFRGKLSRTWFKSVDQLPMNVGDKHYDPLFPL 776
Score = 73.9 bits (155), Expect(2) = 1e-054
Identities = 36/56 (64%), Positives = 41/56 (73%)
Frame = +3 / -3
Query: 135 GNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATRASI 302
GN GS* SP IG+*ST L+HV + P K *SPK SV P PS+PGSQAAT+ASI
Sbjct: 772 GNRGS*CLSPTFIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKASI 605
>gb|DR682125.1|DR682125 EST1072200 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA729, mRNA sequence
Length = 896
Score = 235 bits (508), Expect(2) = 1e-089
Identities = 101/167 (60%), Positives = 124/167 (74%)
Frame = -3 / -1
Query: 820 SDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIG 641
+D SL + +G KEHR LAREAVRKSLVLLKNGK +KP LPL K+A +ILVAGTH D++G
Sbjct: 857 ADPSLANQLGSKEHRELAREAVRKSLVLLKNGKSASKPLLPLDKNAPKILVAGTHPDNLG 678
Query: 640 YQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVV 461
YQCGGWTI W G SG T+GT+ILEAI+ V T+VVY++ P ++ GFSYA+VVV
Sbjct: 677 YQCGGWTIEWQGLSGNSTIGTTILEAIKFSVSPSTDVVYQQNPDANYVKGQGFSYAIVVV 498
Query: 460 GEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
GE PYAE GD +L+IP +G D I V + LVI+ISGRPL+IE
Sbjct: 497 GEAPYAEMKGDNFNLTIPLSGGDTIKNVCGSLKCLVILISGRPLVIE 357
Score = 115 bits (246), Expect(2) = 1e-089
Identities = 42/64 (65%), Positives = 52/64 (81%)
Frame = -3 / -1
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGDH F G LP TW KSVDQLP++ GD +YDPLFP+
Sbjct: 350 LPLVDAFVAAWLPGTEGQGVTDVIFGDHGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPL 171
Query: 130 GYGL 119
G+GL
Sbjct: 170 GFGL 159
Score = 104 bits (222), Expect(4) = 3e-049
Identities = 49/94 (52%), Positives = 62/94 (65%)
Frame = +3 / +1
Query: 528 TTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRN 707
TTSV T + +AS ++VP V FPL+PCH+IV PPH* P S VPAT IL A L+ G
Sbjct: 565 TTSVEGLTENLIASRIVVPMVEFPLNPCHSIVHPPH**PRLSG*VPATRILGAFLSRGSK 744
Query: 708 GLF*SLPFFRSTKDLRTASRASNRCSLQPTMSSR 809
GL PFF +T+D TAS A++ CSL P+ +R
Sbjct: 745 GLLADFPFFNNTRDFLTASLANSLCSLLPSWLAR 846
Score = 78.0 bits (164), Expect(4) = 3e-049
Identities = 37/60 (61%), Positives = 42/60 (70%)
Frame = +3 / +1
Query: 120 SPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATRAS 299
+P P GN GS* SP IGN*ST L+HV G+ P *SPK SV P PS+PGS AAT+AS
Sbjct: 160 NPNPKGNKGS*CLSPTFIGN*STLLNHVLGSFP*NP*SPKITSVTPWPSVPGSHAATKAS 339
Score = 45.1 bits (92), Expect(4) = 3e-049
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +3 / +1
Query: 378 TRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENP 488
T +I S PL GI++ LSP SA G SPTTT A ENP
Sbjct: 415 TFLIVSPPLKGIVKLKLSPFISA*GASPTTTIAYENP 525
Score = 24.9 bits (48), Expect(4) = 3e-049
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 321 SIINGLPDITITR 359
SI GLPDI ITR
Sbjct: 358 SITRGLPDINITR 396
>gb|CF671079.1|CF671079 RTCNT1_54_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_54_C10_A029 5', mRNA sequence
Length = 713
Score = 247 bits (533), Expect(2) = 2e-088
Identities = 105/174 (60%), Positives = 129/174 (74%)
Frame = -3 / +2
Query: 841 GVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAG 662
G+F HP ++ SL++ +G K HR LAREAVRKSLVLLKNGK +KP LPL K+A +ILVAG
Sbjct: 5 GLF*HPMANPSLVNQLGSKVHRELAREAVRKSLVLLKNGKSASKPLLPLNKNAAKILVAG 184
Query: 661 THADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGF 482
THAD++GYQCGGWTI W G SG T GT+ILEAI+ V TEVVY++ P +E GF
Sbjct: 185 THADNLGYQCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVYQENPDAKYVEGQGF 364
Query: 481 SYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
SYA+V+VGE PYAE GD +L+IP G+D I V + LVI+ISGRPL+IE
Sbjct: 365 SYAIVLVGEAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIE 526
Score = 146 bits (314), Expect(2) = 1e-050
Identities = 83/174 (47%), Positives = 99/174 (56%)
Frame = +3 / -3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
SI +GLPDI ITR T +I S P GI++ LSP SA G SPT T A ENP S
Sbjct: 525 SITSGLPDIKITRHFTEPHTFLIVSAPPKGIVKLRLSPNVSA*GASPTRTMAYENPCPST 346
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSIL 680
+ G TTSV T +AS ++VP V FPL+PC IV PPH* P SA VPAT I
Sbjct: 345 YFASGFS**TTSVEGLTVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIF 166
Query: 681 FASLANGRNGLF*SLPFFRSTKDLRTASRASNRCSLQPTMSSRDWSENGCSNTP 842
A L G GL PFF ST+D TAS A++ C+L P+ +R GC +P
Sbjct: 165 AAFLFKGSKGLLADFPFFNSTRDFLTASLANSLCTLLPSWLTRLGLAMGC*KSP 4
Score = 99.6 bits (211), Expect(2) = 2e-088
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = -3 / +2
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L I+A VAAWLPG+EG G+TD +FGD F G L TW KSVDQLP++ GD +YDPLFP+
Sbjct: 533 LPLIDAFVAAWLPGTEGQGVTDVIFGDQGFRGKLSRTWFKSVDQLPMNVGDKHYDPLFPL 712
Score = 73.9 bits (155), Expect(2) = 1e-050
Identities = 36/56 (64%), Positives = 41/56 (73%)
Frame = +3 / -3
Query: 135 GNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATRASI 302
GN GS* SP IG+*ST L+HV + P K *SPK SV P PS+PGSQAAT+ASI
Sbjct: 708 GNRGS*CLSPTFIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKASI 541
>gb|DR024206.1|DR024206 STRS1_63_B11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_B11_A034 3', mRNA sequence
Length = 869
Score = 232 bits (501), Expect(2) = 6e-088
Identities = 98/164 (59%), Positives = 121/164 (73%)
Frame = -3 / +2
Query: 811 SLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIGYQC 632
SL + +G KEHR LAREAVRKSLVLLKNGK N P LPL K+A +ILV GTHAD++GYQC
Sbjct: 8 SLANQLGSKEHRELAREAVRKSLVLLKNGKSTNNPLLPLNKNASKILVVGTHADNLGYQC 187
Query: 631 GGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEV 452
GGWTI W G SG T+GT+ LEAI+ V T+VVY+K P ++ GFSYA+VV+GE
Sbjct: 188 GGWTIEWQGLSGNSTIGTTFLEAIKLAVSSSTKVVYKKNPDADYVKGKGFSYAIVVIGEA 367
Query: 451 PYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
PYAE+ GD +L+IP +G D I V + LVI+ISGRPL+I+
Sbjct: 368 PYAEYYGDNLNLTIPLSGGDTIKNVCGSLKCLVILISGRPLVIK 499
Score = 135 bits (289), Expect(3) = 7e-049
Identities = 71/144 (49%), Positives = 89/144 (61%)
Frame = +3 / -3
Query: 378 TRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNS 557
T +I S PL G+++ LSP +SA G SP TT A ENP ++ G F TT V T +
Sbjct: 441 TFLIVSPPLKGMVKLRLSP*YSA*GASPITTIAYENPFPLT*SASGFFL*TTLVEELTAN 262
Query: 558 CMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFR 737
+AS +VP V FPL+PCH+IV PPH* P SA VP T IL A L G GLF PFF
Sbjct: 261 LIASRNVVPIVEFPLNPCHSIVHPPH**PRLSA*VPTTRILEAFLFKGSKGLFVDFPFFN 82
Query: 738 STKDLRTASRASNRCSLQPTMSSR 809
+T+D TAS A++ CSL P+ +R
Sbjct: 81 NTRDFLTASLANSLCSLLPSWLAR 10
Score = 112 bits (240), Expect(2) = 6e-088
Identities = 41/64 (64%), Positives = 52/64 (81%)
Frame = -3 / +2
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGD+ F G LP TW KSVDQLP++ GD +YDPLFP+
Sbjct: 506 LPLVDAFVAAWLPGTEGQGVTDVIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPL 685
Query: 130 GYGL 119
G+GL
Sbjct: 686 GFGL 697
Score = 74.8 bits (157), Expect(3) = 7e-049
Identities = 35/63 (55%), Positives = 43/63 (68%)
Frame = +3 / -3
Query: 111 NIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAAT 290
N+ +P P GN GS* SP +G+ ST L+HV G+ P *SPK SV P PS+PGS AAT
Sbjct: 705 NVDNPKPKGNKGS*CLSPTFMGSWSTLLNHVLGSFP*NP*SPKITSVTPWPSVPGSHAAT 526
Query: 291 RAS 299
+AS
Sbjct: 525 KAS 517
Score = 23.1 bits (44), Expect(3) = 7e-049
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / -3
Query: 324 IINGLPDITITR 359
I +GLPDI ITR
Sbjct: 495 ITSGLPDIKITR 460
>gb|DR099434.1|DR099434 STRR1_55_C05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_55_C05_A033 5', mRNA sequence
Length = 719
Score = 261 bits (564), Expect(2) = 3e-079
Identities = 110/184 (59%), Positives = 134/184 (72%)
Frame = -3 / +1
Query: 871 RRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLA 692
RRILRVKF G+FE P +D +L +G KEHR LAREAVRKSLVLLKNGK ++PFLPL
Sbjct: 61 RRILRVKFTMGLFEQPLADPNLAGHLGSKEHRNLAREAVRKSLVLLKNGKSTSEPFLPLD 240
Query: 691 KDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCP 512
K+ +ILVAGTH D++GYQCGGWT+ W G SG T+GT+ILEAI+ V TEVVY++ P
Sbjct: 241 KNVSKILVAGTHPDNLGYQCGGWTMQWQGSSGNSTIGTTILEAIKLAVSPSTEVVYQQNP 420
Query: 511 TEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRP 332
++ GFSY +VVVGE PYAE GD +L+IP G D I V + LVI+ISGRP
Sbjct: 421 DANYVKEQGFSYGIVVVGEAPYAEMFGDNLNLTIPMGGGDTIKNVCGSLKCLVILISGRP 600
Query: 331 LIIE 320
L+IE
Sbjct: 601 LVIE 612
Score = 119 bits (254), Expect(4) = 3e-041
Identities = 57/113 (50%), Positives = 67/113 (59%)
Frame = +3 / -1
Query: 528 TTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRN 707
TTSV T + +AS ++VP V FPL PCH IV PPH P S VPAT IL L+ GR
Sbjct: 404 TTSVEGLTANLIASRIVVPMVEFPLDPCHCIVHPPHW*PRLSGWVPATRILETFLSKGRK 225
Query: 708 GLF*SLPFFRSTKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
G PFF ST+D TAS A CSL P +R S GCS +P +N TL+I
Sbjct: 224 GSLVDFPFFNSTRDFLTASLAKFLCSLLPRWPARFGSARGCSKSPIVNFTLKI 66
Score = 55.1 bits (114), Expect(2) = 3e-079
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = -3 / +1
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVG 215
L ++A VAAWLPG++G G+TD +FGD+DF G
Sbjct: 619 LPLVDAFVAAWLPGTKGRGVTDVIFGDYDFEG 714
Score = 43.7 bits (89), Expect(4) = 3e-041
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3 / -1
Query: 216 PTKS*SPKRQSVIPMPSLPGSQAATRAS 299
P+KS*SPK SV P P +PGS AAT+AS
Sbjct: 713 PSKS*SPKITSVTPRPFVPGSHAATKAS 630
Score = 37.3 bits (75), Expect(4) = 3e-041
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +3 / -1
Query: 378 TRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENP 488
T +I S P GI++ LSP SA G SPTTT ENP
Sbjct: 554 TFLIVSPPPMGIVKLRLSPNISA*GASPTTTIPYENP 444
Score = 24.9 bits (48), Expect(4) = 3e-041
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3 / -1
Query: 321 SIINGLPDITITR 359
SI +GLPDI ITR
Sbjct: 611 SITSGLPDIKITR 573
>gb|DR099170.1|DR099170 STRR1_53_D05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_53_D05_A033 5', mRNA sequence
Length = 693
Score = 261 bits (564), Expect(2) = 9e-075
Identities = 110/184 (59%), Positives = 134/184 (72%)
Frame = -3 / +2
Query: 871 RRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLA 692
RRILRVKF G+FE P +D +L +G KEHR LAREAVRKSLVLLKNGK ++PFLPL
Sbjct: 65 RRILRVKFTMGLFEQPLADPNLAGHLGSKEHRNLAREAVRKSLVLLKNGKSTSEPFLPLD 244
Query: 691 KDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCP 512
K+ +ILVAGTH D++GYQCGGWT+ W G SG T+GT+ILEAI+ V TEVVY++ P
Sbjct: 245 KNVSKILVAGTHPDNLGYQCGGWTMQWQGSSGNSTIGTTILEAIKLAVSPSTEVVYQQNP 424
Query: 511 TEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRP 332
++ GFSY +VVVGE PYAE GD +L+IP G D I V + LVI+ISGRP
Sbjct: 425 DANYVKEQGFSYGIVVVGEAPYAEMFGDNLNLTIPMGGGDTIKNVCGSLKCLVILISGRP 604
Query: 331 LIIE 320
L+IE
Sbjct: 605 LVIE 616
Score = 119 bits (254), Expect(4) = 5e-038
Identities = 57/113 (50%), Positives = 67/113 (59%)
Frame = +3 / -1
Query: 528 TTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRN 707
TTSV T + +AS ++VP V FPL PCH IV PPH P S VPAT IL L+ GR
Sbjct: 408 TTSVEGLTANLIASRIVVPMVEFPLDPCHCIVHPPHW*PRLSGWVPATRILETFLSKGRK 229
Query: 708 GLF*SLPFFRSTKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
G PFF ST+D TAS A CSL P +R S GCS +P +N TL+I
Sbjct: 228 GSLVDFPFFNSTRDFLTASLAKFLCSLLPRWPARFGSARGCSKSPIVNFTLKI 70
Score = 40.0 bits (81), Expect(2) = 9e-075
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = -3 / +2
Query: 310 LEKIEALVAAWLPGSEGMGITD 245
L ++A VAAWLPG+EG G+TD
Sbjct: 623 LPLVDAFVAAWLPGTEGRGVTD 688
Score = 37.3 bits (75), Expect(4) = 5e-038
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +3 / -1
Query: 378 TRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENP 488
T +I S P GI++ LSP SA G SPTTT ENP
Sbjct: 558 TFLIVSPPPMGIVKLRLSPNISA*GASPTTTIPYENP 448
Score = 32.7 bits (65), Expect(4) = 5e-038
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3 / -1
Query: 246 SVIPMPSLPGSQAATRAS 299
SV P PS+PGS AAT+AS
Sbjct: 687 SVTPRPSVPGSHAATKAS 634
Score = 24.9 bits (48), Expect(4) = 5e-038
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3 / -1
Query: 321 SIINGLPDITITR 359
SI +GLPDI ITR
Sbjct: 615 SITSGLPDIKITR 577
>gb|CO363132.1|CO363132 RTK1_7_G05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_G05_A029 5', mRNA sequence
Length = 743
Score = 182 bits (392), Expect(2) = 1e-071
Identities = 76/128 (59%), Positives = 93/128 (72%)
Frame = -3 / -3
Query: 703 LPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVY 524
LPL K+A +ILVAGTHAD++GYQCGGWTI W G SG T GT+ILEAI+ V TEVVY
Sbjct: 741 LPLNKNAAKILVAGTHADNLGYQCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVY 562
Query: 523 EKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVI 344
++ P +E GFSYA+V+VGE PYAE GD +L+IP G+D I V + LVI+I
Sbjct: 561 QENPDAKYVEGQGFSYAIVLVGEAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILI 382
Query: 343 SGRPLIIE 320
SGRPL+IE
Sbjct: 381 SGRPLVIE 358
Score = 108 bits (230), Expect(2) = 1e-071
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = -3 / -3
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L I+A VAAWLPG+EG G+TD +FGD F G L TW KSVDQLP++ GD +YDPLFP+
Sbjct: 351 LPLIDAFVAAWLPGTEGQGVTDVIFGDQGFRGKLSRTWFKSVDQLPMNVGDKHYDPLFPL 172
Query: 130 GYGL 119
G+GL
Sbjct: 171 GFGL 160
Score = 107 bits (229), Expect(2) = 1e-040
Identities = 64/127 (50%), Positives = 73/127 (57%)
Frame = +3 / +2
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
SI +GLPDI ITR T +I S P GI++ LSP SA G SPT T A ENP S
Sbjct: 359 SITSGLPDIKITRHFTEPHTFLIVSAPPKGIVKLRLSPNVSA*GASPTRTMAYENPCPST 538
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSIL 680
+ G TTSV T +AS ++VP V FPL+PC IV PPH* P SA VPAT I
Sbjct: 539 YFASGFS**TTSVEGLTVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIF 718
Query: 681 FASLANG 701
A L G
Sbjct: 719 AAFLFKG 739
Score = 79.4 bits (167), Expect(2) = 1e-040
Identities = 38/61 (62%), Positives = 44/61 (72%)
Frame = +3 / +2
Query: 120 SPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATRAS 299
+P P GN GS* SP IG+*ST L+HV + P K *SPK SV P PS+PGSQAAT+AS
Sbjct: 161 NPKPKGNRGS*CLSPTFIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKAS 340
Query: 300 I 302
I
Sbjct: 341 I 343
>gb|DR024240.1|DR024240 STRS1_63_B11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_B11_A034 5', mRNA sequence
Length = 864
Score = 260 bits (563), Expect(2) = 2e-070
Identities = 110/184 (59%), Positives = 136/184 (73%)
Frame = -3 / +2
Query: 871 RRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLA 692
RRILRVKF G+FE P ++ SL + +G KEHR LAREAVRKSLVLLKNGK N P LPL
Sbjct: 260 RRILRVKFAMGLFEQPLANPSLANQLGSKEHRELAREAVRKSLVLLKNGKSTNNPLLPLN 439
Query: 691 KDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCP 512
K+A +ILV GTHAD++GYQCGGWTI W G SG T+GT+ LEAI+ V T+VVY+K P
Sbjct: 440 KNASKILVVGTHADNLGYQCGGWTIEWQGLSGNSTIGTTFLEAIKLAVSSSTKVVYKKNP 619
Query: 511 TEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRP 332
++ GFSYA+VV+GE PYAE+ GD +L+IP +G D I V + LVI+ISGRP
Sbjct: 620 DADYVKGKGFSYAIVVIGEAPYAEYYGDNLNLTIPLSGGDTIKNVCGSLKCLVILISGRP 799
Query: 331 LIIE 320
L+I+
Sbjct: 800 LVIK 811
Score = 151 bits (324), Expect(3) = 2e-038
Identities = 79/163 (48%), Positives = 99/163 (60%)
Frame = +3 / -1
Query: 378 TRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNS 557
T +I S PL G+++ LSP +SA G SP TT A ENP ++ G F TT V T +
Sbjct: 753 TFLIVSPPLKGMVKLRLSP*YSA*GASPITTIAYENPFPLT*SASGFFL*TTLVEELTAN 574
Query: 558 CMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFR 737
+AS +VP V FPL+PCH+IV PPH* P SA VP T IL A L G GLF PFF
Sbjct: 573 LIASRNVVPIVEFPLNPCHSIVHPPH**PRLSA*VPTTRILEAFLFKGSKGLFVDFPFFN 394
Query: 738 STKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
+T+D TAS A++ CSL P+ +R GCS +P N TL+I
Sbjct: 393 NTRDFLTASLANSLCSLLPSWLARLGLARGCSKSPIANFTLKI 265
Score = 26.3 bits (51), Expect(2) = 2e-070
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / +2
Query: 310 LEKIEALVAAWLPGS 266
L ++A VAAWLPG+
Sbjct: 818 LPLVDAFVAAWLPGT 862
Score = 23.5 bits (45), Expect(3) = 2e-038
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3 / -1
Query: 264 SLPGSQAATRAS 299
S+PGS AAT+AS
Sbjct: 864 SVPGSHAATKAS 829
Score = 23.1 bits (44), Expect(3) = 2e-038
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / -1
Query: 324 IINGLPDITITR 359
I +GLPDI ITR
Sbjct: 807 ITSGLPDIKITR 772
>gb|DR056258.1|DR056258 RTCA1_29_C09.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_29_C09_A029 3', mRNA sequence
Length = 714
Score = 177 bits (382), Expect(2) = 2e-069
Identities = 74/126 (58%), Positives = 91/126 (72%)
Frame = -3 / +1
Query: 697 LAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEK 518
L K+A +ILVAGTHAD++GYQCGGWTI W G SG T GT+ILEAI+ V TEVVY++
Sbjct: 1 LNKNAAKILVAGTHADNLGYQCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVYQE 180
Query: 517 CPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISG 338
P +E GFSYA+V+VGE PYAE GD +L+IP G+D I V + LVI+ISG
Sbjct: 181 NPDAKYVEEQGFSYAIVLVGEAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILISG 360
Query: 337 RPLIIE 320
RPL+IE
Sbjct: 361 RPLVIE 378
Score = 108 bits (231), Expect(2) = 7e-041
Identities = 64/124 (51%), Positives = 73/124 (58%)
Frame = +3 / -2
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
SI +GLPDI ITR T +I S P NGI++ LSP SA G SPT T A ENP S
Sbjct: 377 SITSGLPDIKITRHFTEPHTFLIVSAPPNGIVKLRLSPNVSA*GASPTRTMAYENPCSST 198
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSIL 680
+ G TTSV T +AS ++VP V FPL+PC IV PPH* P SA VPAT I
Sbjct: 197 YFASGFS**TTSVEGLTVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIF 18
Query: 681 FASL 692
A L
Sbjct: 17 AAFL 6
Score = 105 bits (225), Expect(2) = 2e-069
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = -3 / +1
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L I+A VAAWLPG+EG G+TD +FGD F G L TW K VDQLP++ GD +YDPLFP+
Sbjct: 385 LPLIDAFVAAWLPGTEGQGVTDVIFGDQGFRGKLSRTWFKRVDQLPMNVGDKHYDPLFPL 564
Query: 130 GYGL 119
G+GL
Sbjct: 565 GFGL 576
Score = 79.4 bits (167), Expect(2) = 7e-041
Identities = 38/61 (62%), Positives = 44/61 (72%)
Frame = +3 / -2
Query: 120 SPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATRAS 299
+P P GN GS* SP IG+*ST L+HV + P K *SPK SV P PS+PGSQAAT+AS
Sbjct: 575 NPKPKGNRGS*CLSPTFIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKAS 396
Query: 300 I 302
I
Sbjct: 395 I 393
>gb|CO162180.1|CO162180 FLD1_33_D11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_D11_A029 5', mRNA sequence
Length = 846
Score = 168 bits (362), Expect(2) = 2e-067
Identities = 70/119 (58%), Positives = 86/119 (72%)
Frame = -3 / +1
Query: 676 ILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMI 497
+LVAGTH D++GYQCGGWT+ W G SG IT+GT+ILEAI+ V TEVVYE+ P +
Sbjct: 1 VLVAGTHPDNLGYQCGGWTMEWQGLSGNITVGTTILEAIKLAVSPSTEVVYEQNPDANYV 180
Query: 496 ETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
+ GFSYA+VVVGE PYAE GD +L+IP G D I V + LVI+ISGRPL+IE
Sbjct: 181 KGQGFSYAIVVVGEAPYAETFGDNLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIE 357
Score = 108 bits (230), Expect(2) = 2e-067
Identities = 40/64 (62%), Positives = 51/64 (79%)
Frame = -3 / +1
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGD+ F G L TW KSVDQLP++ GD +YDPLFP+
Sbjct: 364 LPLVDAFVAAWLPGTEGQGVTDVIFGDYRFQGKLARTWFKSVDQLPMNIGDQHYDPLFPL 543
Query: 130 GYGL 119
G+GL
Sbjct: 544 GFGL 555
Score = 100 bits (214), Expect(3) = 2e-039
Identities = 52/98 (53%), Positives = 63/98 (64%)
Frame = +3 / -2
Query: 378 TRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNS 557
T +I S P G+++ LSP SAYG SPTTT A ENP + G S TTSV T S
Sbjct: 299 TVLIVSPPPRGMVKLRLSPNVSAYGASPTTTMAYENPCPLT*LASGFCS*TTSVEGLTAS 120
Query: 558 CMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPAT 671
+AS ++VP V+FPL+PCH+IV PPH* P S VPAT
Sbjct: 119 LIASRIVVPTVMFPLNPCHSIVHPPH**PRLSGWVPAT 6
Score = 75.3 bits (158), Expect(3) = 2e-039
Identities = 36/60 (60%), Positives = 43/60 (71%)
Frame = +3 / -2
Query: 120 SPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATRAS 299
+P P GN GS* SP IG+*ST L+HV ++P K *SPK SV P PS+PGS AAT+AS
Sbjct: 554 NPKPKGNRGS*CWSPMFIGS*STLLNHVLASLP*KR*SPKITSVTPWPSVPGSHAATKAS 375
Score = 24.9 bits (48), Expect(3) = 2e-039
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3 / -2
Query: 321 SIINGLPDITITR 359
SI +GLPDI ITR
Sbjct: 356 SITSGLPDIKITR 318
>dbj|BD224350.1| Materials and methods for the modification of plant lignin content
Length = 545
Score = 238 bits (514), Expect = 4e-062
Identities = 102/164 (62%), Positives = 122/164 (74%)
Frame = -3 / +3
Query: 811 SLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIGYQC 632
SL + +G KEHR LAREAVRKSLVLLKNGK NKP LPL K+A ++LVAGTH D++GYQC
Sbjct: 27 SLANQLGSKEHRELAREAVRKSLVLLKNGKSANKPLLPLEKNASKVLVAGTHPDNLGYQC 206
Query: 631 GGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEV 452
GGWT+ W G SG IT+GT+ILEAI+ V TEVVYE+ P ++ GFSYA+VVVGE
Sbjct: 207 GGWTMEWQGLSGNITVGTTILEAIKLAVSPSTEVVYEQNPDANYVKGQGFSYAIVVVGEA 386
Query: 451 PYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
PYAE GD +L+IP G D I V + LVI+ISGRPL+IE
Sbjct: 387 PYAETFGDNLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIE 518
Score = 141 bits (302), Expect(2) = 2e-034
Identities = 72/144 (50%), Positives = 89/144 (61%)
Frame = +3 / -2
Query: 378 TRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNS 557
T +I S P G+++ LSP SAYG SPTTT A ENP + G S TTSV T S
Sbjct: 460 TVLIVSPPPRGMVKLRLSPNVSAYGASPTTTMAYENPCPLT*LASGFCS*TTSVEGLTAS 281
Query: 558 CMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFR 737
+AS ++VP V+FPL+PCH+IV PPH* P S VPAT L A + G GL PFF
Sbjct: 280 LIASRIVVPTVMFPLNPCHSIVHPPH**PRLSGWVPATRTLEAFFSKGSKGLLADFPFFN 101
Query: 738 STKDLRTASRASNRCSLQPTMSSR 809
+TKD TAS A++ CSL P+ +R
Sbjct: 100 NTKDFLTASLANSLCSLLPSWLAR 29
Score = 24.9 bits (48), Expect(2) = 2e-034
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3 / -2
Query: 321 SIINGLPDITITR 359
SI +GLPDI ITR
Sbjct: 517 SITSGLPDIKITR 479
>dbj|BD224413.1| Materials and methods for the modification of plant lignin content
Length = 528
Score = 238 bits (514), Expect = 4e-062
Identities = 102/164 (62%), Positives = 122/164 (74%)
Frame = -3 / +1
Query: 811 SLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIGYQC 632
SL + +G KEHR LAREAVRKSLVLLKNGK NKP LPL K+A ++LVAGTH D++GYQC
Sbjct: 10 SLANQLGSKEHRELAREAVRKSLVLLKNGKSANKPLLPLEKNASKVLVAGTHPDNLGYQC 189
Query: 631 GGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEV 452
GGWT+ W G SG IT+GT+ILEAI+ V TEVVYE+ P ++ GFSYA+VVVGE
Sbjct: 190 GGWTMEWQGLSGNITVGTTILEAIKLAVSPSTEVVYEQNPDANYVKGQGFSYAIVVVGEA 369
Query: 451 PYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
PYAE GD +L+IP G D I V + LVI+ISGRPL+IE
Sbjct: 370 PYAETFGDNLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIE 501
Score = 141 bits (302), Expect(2) = 2e-034
Identities = 72/144 (50%), Positives = 89/144 (61%)
Frame = +3 / -2
Query: 378 TRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNS 557
T +I S P G+++ LSP SAYG SPTTT A ENP + G S TTSV T S
Sbjct: 443 TVLIVSPPPRGMVKLRLSPNVSAYGASPTTTMAYENPCPLT*LASGFCS*TTSVEGLTAS 264
Query: 558 CMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFR 737
+AS ++VP V+FPL+PCH+IV PPH* P S VPAT L A + G GL PFF
Sbjct: 263 LIASRIVVPTVMFPLNPCHSIVHPPH**PRLSGWVPATRTLEAFFSKGSKGLLADFPFFN 84
Query: 738 STKDLRTASRASNRCSLQPTMSSR 809
+TKD TAS A++ CSL P+ +R
Sbjct: 83 NTKDFLTASLANSLCSLLPSWLAR 12
Score = 24.9 bits (48), Expect(2) = 2e-034
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3 / -2
Query: 321 SIINGLPDITITR 359
SI +GLPDI ITR
Sbjct: 500 SITSGLPDIKITR 462
>gb|CF671009.1|CF671009 RTCNT1_54_C10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_54_C10_A029 3', mRNA sequence
Length = 692
Score = 144 bits (308), Expect(2) = 4e-060
Identities = 60/106 (56%), Positives = 73/106 (68%)
Frame = -3 / +1
Query: 637 QCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVG 458
QCGGWTI W G SG T GT+ILEAI+ V TEVVY++ P +E GFSYA+V+VG
Sbjct: 1 QCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVYQENPDAXYVEGQGFSYAIVLVG 180
Query: 457 EVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
E PYAE GD +L+IP G+D I V + LVI+ISGRPL+IE
Sbjct: 181 EAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIE 318
Score = 108 bits (230), Expect(2) = 4e-060
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = -3 / +1
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L I+A VAAWLPG+EG G+TD +FGD F G L TW KSVDQLP++ GD +YDPLFP+
Sbjct: 325 LPLIDAFVAAWLPGTEGQGVTDVIFGDQGFRGKLSRTWFKSVDQLPMNVGDKHYDPLFPL 504
Query: 130 GYGL 119
G+GL
Sbjct: 505 GFGL 516
Score = 92.3 bits (195), Expect(2) = 5e-036
Identities = 52/105 (49%), Positives = 61/105 (58%)
Frame = +3 / -1
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
SI +GLPDI ITR T +I S P GI++ LSP SA G SPT T A ENP S
Sbjct: 317 SITSGLPDIKITRHFTEPHTFLIVSAPPKGIVKLRLSPNVSA*GASPTRTMAYENPCPST 138
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH 635
+ G TTSV T +AS ++VP V FPL+PC IV PPH
Sbjct: 137 YXASGFS**TTSVEGLTVDLIASRIVVPLVEFPLNPCQVIVHPPH 3
Score = 79.4 bits (167), Expect(2) = 5e-036
Identities = 38/61 (62%), Positives = 44/61 (72%)
Frame = +3 / -1
Query: 120 SPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATRAS 299
+P P GN GS* SP IG+*ST L+HV + P K *SPK SV P PS+PGSQAAT+AS
Sbjct: 515 NPKPKGNRGS*CLSPTFIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKAS 336
Query: 300 I 302
I
Sbjct: 335 I 333
>gb|DR694469.1|DR694469 EST1084561 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC87 3' end, mRNA sequence
Length = 838
Score = 218 bits (470), Expect = 5e-056
Identities = 91/146 (62%), Positives = 112/146 (76%)
Frame = -3 / +1
Query: 883 ESRTRRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPF 704
+ RRILRVKF++G+FEHP +D+SLL +VG HR LAREAVRKSLVLLKNGK KP
Sbjct: 400 DDAVRRILRVKFVAGLFEHPKTDRSLLGMVGNLAHRELAREAVRKSLVLLKNGKMPGKPL 579
Query: 703 LPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVY 524
LPL K A +ILVAG+HAD++GYQCGGWTI+W G SG T+GT+IL+AI++ V TEVVY
Sbjct: 580 LPLDKKAPKILVAGSHADNLGYQCGGWTISWEGGSGATTVGTTILDAIKQAVSPSTEVVY 759
Query: 523 EKCPTEAMIETGGFSYAVVVVGEVPY 446
E+ P + GFSYA+ V+GE PY
Sbjct: 760 EQNPDANFTKGKGFSYAIAVIGEPPY 837
Score = 149 bits (319), Expect = 3e-035
Identities = 74/139 (53%), Positives = 87/139 (62%)
Frame = +3 / -3
Query: 450 GTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQP 629
G SP T A*ENP + + G SYTTSV T MAS M+VP V+ PL P IV P
Sbjct: 833 GGSPITAMA*ENPFPLVKFASGFCSYTTSVDGLTACFMASRMVVPTVVAPLPPSQLIVHP 654
Query: 630 PH*YPISSACVPATSILFASLANGRNGLF*SLPFFRSTKDLRTASRASNRCSLQPTMSSR 809
PH YP SA +PATSI A L+ G NG PFF+ T+DLRTAS AS+ C+ PTM ++
Sbjct: 653 PHWYPRLSA*LPATSIFGAFLSRGNNGFPGIFPFFKRTRDLRTASLASSLCARLPTMPNK 474
Query: 810 DWSENGCSNTPEINLTLRI 866
+ S GCSN P NLTLRI
Sbjct: 473 ERSVFGCSNKPATNLTLRI 417
>gb|DR055806.1|DR055806 RTCA1_26_B12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_26_B12_A029 3', mRNA sequence
Length = 623
Score = 121 bits (259), Expect(2) = 3e-054
Identities = 52/97 (53%), Positives = 64/97 (65%)
Frame = -3 / +2
Query: 613 WHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWT 434
W G SG T GT+ILEAIQ V TEVVY++ P ++ GFSYA+VVVGE PYAE
Sbjct: 5 WQGLSGNTTKGTTILEAIQSAVSPSTEVVYQENPDANYVKGQGFSYAIVVVGEAPYAETA 184
Query: 433 GDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLII 323
GD +L+IP G D I V + LVI++SGRPL+I
Sbjct: 185 GDNLNLTIPLGGGDTINNVCGSVKCLVILVSGRPLVI 295
Score = 111 bits (237), Expect(2) = 3e-054
Identities = 42/70 (60%), Positives = 53/70 (75%)
Frame = -3 / +2
Query: 328 IIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNY 149
++ + L +EA VAAWLPGSEG G+TD +FGD+ F G L TW KSVDQLP++ GD +Y
Sbjct: 287 LVITPYLPLVEAFVAAWLPGSEGQGVTDVIFGDYGFQGKLSRTWFKSVDQLPMNVGDKHY 466
Query: 148 DPLFPVGYGL 119
DPLFP G+GL
Sbjct: 467 DPLFPFGFGL 496
Score = 73.5 bits (154), Expect(3) = 1e-028
Identities = 36/62 (58%), Positives = 42/62 (67%)
Frame = +3 / -3
Query: 114 IFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATR 293
+ +P P GN GS* SP IG+*ST L+HV + P K *SPK SV P PS PGS AAT+
Sbjct: 501 VVNPKPKGNRGS*CLSPTFIGS*STLLNHVLESFPWKP*SPKITSVTPWPSDPGSHAATK 322
Query: 294 AS 299
AS
Sbjct: 321 AS 316
Score = 51.9 bits (107), Expect(3) = 1e-028
Identities = 28/55 (50%), Positives = 33/55 (60%)
Frame = +3 / -3
Query: 324 IINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENP 488
I +GLPD ITR T +I S P G+++ LSP SA G SPTTT A ENP
Sbjct: 294 ITSGLPDTKITRHFTEPHTLLIVSPPPKGMVKLRLSPAVSA*GASPTTTMAYENP 130
Score = 39.1 bits (79), Expect(3) = 1e-028
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3 / -3
Query: 528 TTSVCTPTNSCMASNMLVPRVIFPLSPCH 614
TTSV T +AS ++VP V+FPL+PCH
Sbjct: 90 TTSVEGLTADWIASRIVVPLVVFPLNPCH 4
>gb|DT638708.1|DT638708 EST1153639 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHI44 3' end, mRNA sequence
Length = 865
Score = 180 bits (388), Expect(2) = 7e-054
Identities = 75/116 (64%), Positives = 92/116 (79%)
Frame = -3 / +3
Query: 883 ESRTRRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPF 704
+ RRILRVKF++G+FEHP +D+SLL +VG HR LAREAVRKSLVLLKNGK KP
Sbjct: 408 DDAVRRILRVKFVAGLFEHPKTDRSLLGMVGNLAHRELAREAVRKSLVLLKNGKMPGKPL 587
Query: 703 LPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQT 536
LPL K A +ILVAG+HAD++GYQCGGWTI+W G SG T+GT+IL+AI++ V T
Sbjct: 588 LPLDKKAPKILVAGSHADNLGYQCGGWTISWEGGSGATTVGTTILDAIKQAVSPST 755
Score = 124 bits (265), Expect(2) = 1e-032
Identities = 57/102 (55%), Positives = 68/102 (66%)
Frame = +3 / -1
Query: 561 MASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRS 740
MAS M+VP V+ PL P IV PPH YP SA +PATSI A L+ G NG PFF+
Sbjct: 730 MASRMVVPTVVAPLPPSQLIVHPPHWYPRLSA*LPATSIFGAFLSRGNNGFPGIFPFFKR 551
Query: 741 TKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
T+DLRTAS AS+ C+ PTM +++ S GCSN P NLTLRI
Sbjct: 550 TRDLRTASLASSLCARLPTMPNKERSVFGCSNKPATNLTLRI 425
Score = 51.0 bits (105), Expect(2) = 7e-054
Identities = 21/38 (55%), Positives = 25/38 (65%)
Frame = -3 / +1
Query: 541 QTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGD 428
Q EVVYE+ P + GFSYA+ V+GE PY E TGD
Sbjct: 751 QPEVVYEQNPDANFTKGKGFSYAIAVIGEPPYVESTGD 864
Score = 35.9 bits (72), Expect(2) = 1e-032
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = +3 / -3
Query: 429 SPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTS 536
SPV S G SP T A*ENP + + G SYTTS
Sbjct: 863 SPVDST*GGSPITAMA*ENPFPLVKFASGFCSYTTS 756
>gb|DR169238.1|DR169238 RTPHOS1_31_B02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_31_B02_A029 3', mRNA sequence
Length = 666
Score = 117 bits (250), Expect(2) = 4e-052
Identities = 52/96 (54%), Positives = 65/96 (67%)
Frame = -3 / +3
Query: 607 GDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGD 428
G SG T GT+ILEAI+ V TEVVY++ P +E GFSYA+V+VGE PYAE GD
Sbjct: 6 GLSGNSTKGTTILEAIKSTVSPSTEVVYQENPDAKYVEGQGFSYAIVLVGEAPYAETFGD 185
Query: 427 RTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
+L+IP G+D I V + LVI+ISGRPL+IE
Sbjct: 186 NLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIE 293
Score = 108 bits (230), Expect(2) = 4e-052
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = -3 / +3
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L I+A VAAWLPG+EG G+TD +FGD F G L TW KSVDQLP++ GD +YDPLFP+
Sbjct: 300 LPLIDAFVAAWLPGTEGQGVTDVIFGDQGFRGKLSRTWFKSVDQLPMNVGDKHYDPLFPL 479
Query: 130 GYGL 119
G+GL
Sbjct: 480 GFGL 491
Score = 79.4 bits (167), Expect(2) = 1e-031
Identities = 38/61 (62%), Positives = 44/61 (72%)
Frame = +3 / -3
Query: 120 SPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATRAS 299
+P P GN GS* SP IG+*ST L+HV + P K *SPK SV P PS+PGSQAAT+AS
Sbjct: 490 NPKPKGNRGS*CLSPTFIGS*STLLNHVLESFPLKP*SPKITSVTPWPSVPGSQAATKAS 311
Query: 300 I 302
I
Sbjct: 310 I 308
Score = 77.6 bits (163), Expect(2) = 1e-031
Identities = 47/97 (48%), Positives = 56/97 (57%)
Frame = +3 / -3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
SI +GLPDI ITR T +I S P GI++ LSP SA G SPT T A ENP S
Sbjct: 292 SITSGLPDIKITRHFTEPHTFLIVSAPPKGIVKLRLSPNVSA*GASPTRTMAYENPCPST 113
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVIFPLSPC 611
+ G TTSV T +AS ++VP V FPL+PC
Sbjct: 112 YFASGFS**TTSVEGLTVDLIASRIVVPLVEFPLNPC 2
>gb|DR018345.1|DR018345 STRS1_22_G03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_22_G03_A034 3', mRNA sequence
Length = 755
Score = 112 bits (240), Expect(3) = 1e-051
Identities = 41/64 (64%), Positives = 52/64 (81%)
Frame = -3 / +3
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGD+ F G LP TW KSVDQLP++ GD +YDPLFP+
Sbjct: 312 LPLVDAFVAAWLPGTEGQGVTDVIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPL 491
Query: 130 GYGL 119
G+GL
Sbjct: 492 GFGL 503
Score = 91.3 bits (193), Expect(3) = 1e-051
Identities = 38/73 (52%), Positives = 52/73 (71%)
Frame = -3 / +3
Query: 538 TEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPT 359
++VVY+K P ++ GFSYA+VVVGE PYAE+ GD +L+IP +G D I V +
Sbjct: 87 SKVVYKKNPDVDYVKGKGFSYAIVVVGEAPYAEYYGDNLNLTIPLSGGDTIKNVCGSLKC 266
Query: 358 LVIVISGRPLIIE 320
LVI+ISGRPL+I+
Sbjct: 267 LVILISGRPLVIK 305
Score = 75.8 bits (159), Expect(3) = 2e-022
Identities = 35/63 (55%), Positives = 43/63 (68%)
Frame = +3 / -2
Query: 111 NIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAAT 290
N+ +P P GN GS* SP +G+ ST L+HV G+ P *SPK SV P PS+PGS AAT
Sbjct: 511 NVVNPKPKGNKGS*CLSPTFMGSWSTLLNHVLGSFP*NP*SPKITSVTPWPSVPGSHAAT 332
Query: 291 RAS 299
+AS
Sbjct: 331 KAS 323
Score = 45.1 bits (92), Expect(3) = 2e-022
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +3 / -2
Query: 378 TRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTT 533
T +I S PL G+++ LSP +SA G SPTTT A ENP ++ G F TT
Sbjct: 247 TFLIVSPPLKGMVKLRLSP*YSA*GASPTTTIAYENPFPLT*STSGFFL*TT 92
Score = 38.2 bits (77), Expect(3) = 1e-051
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -3 / +3
Query: 625 WTIAWHGDSGKITLGTSILEAIQ 557
WTI W G SG T+GT+ LEAI+
Sbjct: 3 WTIEWQGLSGNSTIGTTFLEAIK 71
Score = 23.1 bits (44), Expect(3) = 2e-022
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / -2
Query: 324 IINGLPDITITR 359
I +GLPDI ITR
Sbjct: 301 ITSGLPDIKITR 266
>gb|DR018410.1|DR018410 STRS1_22_G03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_22_G03_A034 5', mRNA sequence
Length = 747
Score = 171 bits (369), Expect(2) = 2e-050
Identities = 71/105 (67%), Positives = 83/105 (79%)
Frame = -3 / +3
Query: 871 RRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLA 692
RRILRVKF G+FE P ++ SL + +G KEHR LAREAVRKSLVLLKNGK N P LPL
Sbjct: 291 RRILRVKFTMGLFEQPLANPSLANQLGSKEHRELAREAVRKSLVLLKNGKSMNNPLLPLN 470
Query: 691 KDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQ 557
K+A +ILV GTHAD++GYQCGGWTI W G SG T+GT+ LEAI+
Sbjct: 471 KNASKILVVGTHADNLGYQCGGWTIEWQGLSGNSTIGTTFLEAIK 605
Score = 120 bits (256), Expect = 2e-026
Identities = 61/134 (45%), Positives = 78/134 (58%)
Frame = +3 / -3
Query: 465 TTTA*ENPPVSIIASVGHFSYTTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH*YP 644
TTT P + S F T++ T + +AS +VP V FPL+PCH+IV PPH* P
Sbjct: 697 TTTIAYENPFPLT*STSGFFL*TTLEELTANLIASRNVVPIVEFPLNPCHSIVHPPH**P 518
Query: 645 ISSACVPATSILFASLANGRNGLF*SLPFFRSTKDLRTASRASNRCSLQPTMSSRDWSEN 824
SA VP T IL A L G GLF PFF +T+D TAS A++ CSL P+ +R
Sbjct: 517 RLSA*VPTTRILEAFLFKGSKGLFIDFPFFNNTRDFLTASLANSLCSLLPSWLARLGLAR 338
Query: 825 GCSNTPEINLTLRI 866
GCS +P +N TL+I
Sbjct: 337 GCSKSPIVNFTLKI 296
Score = 48.3 bits (99), Expect(2) = 2e-050
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = -3 / +3
Query: 538 TEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEW 437
++VVY+K P ++ GFSYA+VVVGE PYAE+
Sbjct: 621 SKVVYKKNPDVDYVKGKGFSYAIVVVGEAPYAEY 722
>gb|BF516660.1|BF516660 NXSI_001_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_001_G06 5' similar to Arabidopsis thaliana
sequence At5g20950 beta-D-glucan exohydrolase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 422
Score = 198 bits (427), Expect = 4e-050
Identities = 83/130 (63%), Positives = 99/130 (76%)
Frame = -3 / +2
Query: 796 VGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIGYQCGGWTI 617
+G KEHR LAREAVRKSLVLLKNGK ++P LPL K+A +ILVAGTH D++GYQCGGWTI
Sbjct: 11 LGSKEHRDLAREAVRKSLVLLKNGKSASQPLLPLNKNAPKILVAGTHPDNLGYQCGGWTI 190
Query: 616 AWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEW 437
W G SG IT+GT+IL AIQ V TEVVY++ P ++ GFSYA+VVVGE PY E
Sbjct: 191 EWQGLSGNITIGTTILSAIQSAVSSSTEVVYQQNPDANYVKEQGFSYAIVVVGEPPYTEM 370
Query: 436 TGDRTDLSIP 407
GD +L+IP
Sbjct: 371 FGDNLNLTIP 400
Score = 97.7 bits (207), Expect(2) = 4e-023
Identities = 47/90 (52%), Positives = 54/90 (60%)
Frame = +3 / -3
Query: 528 TTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRN 707
TTSV T +A ++VP V+FPL PCH+IV PPH* P S VPAT IL A L G
Sbjct: 279 TTSVEELTADWIAERIVVPMVMFPLKPCHSIVHPPH**PRLSG*VPATRILGAFLFKGSK 100
Query: 708 GLF*SLPFFRSTKDLRTASRASNRCSLQPT 797
G PFF TKD TAS A + CSL P+
Sbjct: 99 GWLADFPFFNKTKDFLTASLAKSLCSLLPS 10
Score = 30.9 bits (61), Expect(2) = 4e-023
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3 / -3
Query: 408 GILRSVLSPVHSAYGTSPTTTTA*ENP 488
G+++ LSP S G SPTTT A ENP
Sbjct: 399 GMVKLRLSPNISV*GGSPTTTIAYENP 319
>gb|CF666460.1|CF666460 RTCNT1_23_A10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_23_A10_A029 5', mRNA sequence
Length = 780
Score = 196 bits (422), Expect = 2e-049
Identities = 82/120 (68%), Positives = 96/120 (80%)
Frame = -3 / +1
Query: 871 RRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLA 692
RRILRVKF G+FEHP S+ SL + +G KEHR LAREAVRKSLVLLKNGK NKP LPL
Sbjct: 409 RRILRVKFTMGLFEHPLSNPSLANQLGSKEHRELAREAVRKSLVLLKNGKSANKPLLPLE 588
Query: 691 KDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCP 512
K+A ++LVAGTH D++GYQCGGWT+ W G SG IT+GT+ILEAI+ V TEVVYE+ P
Sbjct: 589 KNASKVLVAGTHPDNLGYQCGGWTMEWQGLSGNITVGTTILEAIKLAVSPSTEVVYEQNP 768
Score = 126 bits (270), Expect = 2e-028
Identities = 61/120 (50%), Positives = 75/120 (62%)
Frame = +3 / -2
Query: 513 GHFSYTTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASL 692
G S TTSV T S +AS ++VP V+FPL+PCH+IV PPH* P S VPAT L A
Sbjct: 767 GFCS*TTSVEGLTASLIASRIVVPTVMFPLNPCHSIVHPPH**PRLSGWVPATRTLEAFF 588
Query: 693 ANGRNGLF*SLPFFRSTKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRIRL 872
+ G GL PFF +TKD TAS A++ CSL P+ +R GCSN+P +N TL I L
Sbjct: 587 SKGSKGLLADFPFFNNTKDFLTASLANSLCSLLPSWLARLGLLRGCSNSPMVNFTLNILL 408
>gb|DR100370.1|DR100370 STRR1_63_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_63_D08_A033 5', mRNA sequence
Length = 467
Score = 136 bits (291), Expect(2) = 2e-049
Identities = 57/103 (55%), Positives = 69/103 (66%)
Frame = -3 / +3
Query: 631 GGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEV 452
GGWTI W G SG T GT+ILEAIQ V TEVVY++ P ++ GFSYA+VVVGE
Sbjct: 3 GGWTITWQGLSGNTTKGTTILEAIQSAVSPSTEVVYQENPDANYVKGQGFSYAIVVVGEA 182
Query: 451 PYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLII 323
PYAE GD +L+IP G D I V + LVI++SGRPL+I
Sbjct: 183 PYAETAGDNLNLTIPLGGGDTINNVCGSVKCLVILVSGRPLVI 311
Score = 80.3 bits (169), Expect(2) = 2e-049
Identities = 31/54 (57%), Positives = 40/54 (74%)
Frame = -3 / +3
Query: 328 IIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPID 167
++ + L +EA VAAWLPGSEG G+TD +FGD+ F G L TW KSVDQLP++
Sbjct: 303 LVITPYLPLVEAFVAAWLPGSEGQGVTDVIFGDYGFQGKLSRTWFKSVDQLPMN 464
Score = 54.7 bits (113), Expect(3) = 5e-026
Identities = 27/43 (62%), Positives = 31/43 (72%)
Frame = +3 / -2
Query: 171 IGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATRAS 299
IG+*ST L+HV + P K *SPK SV P PS PGS AAT+AS
Sbjct: 460 IGS*STLLNHVLESFPWKP*SPKITSVTPWPSDPGSHAATKAS 332
Score = 51.9 bits (107), Expect(3) = 5e-026
Identities = 28/55 (50%), Positives = 33/55 (60%)
Frame = +3 / -2
Query: 324 IINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENP 488
I +GLPD ITR T +I S P G+++ LSP SA G SPTTT A ENP
Sbjct: 310 ITSGLPDTKITRHFTEPHTLLIVSPPPKGMVKLRLSPAVSA*GASPTTTMAYENP 146
Score = 49.2 bits (101), Expect(3) = 5e-026
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +3 / -2
Query: 528 TTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPP 632
TTSV T +AS ++VP V+FPL+PCH IV PP
Sbjct: 106 TTSVEGLTADWIASRIVVPLVVFPLNPCHVIVHPP 2
>gb|BE762088.1|BE762088 NXCI_076_H01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_076_H01 5' similar to Arabidopsis
thaliana sequence At5g20950 beta-D-glucan
exohydrolase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 179 bits (385), Expect = 3e-044
Identities = 76/120 (63%), Positives = 89/120 (74%)
Frame = -3 / +3
Query: 871 RRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLA 692
RRILRVKF G+FEHP ++ SL + +G K HR LAREAVRKSLVLLKNGK +KP LPL
Sbjct: 6 RRILRVKFTMGLFEHPMANPSLANQLGSKAHRELAREAVRKSLVLLKNGKSDSKPLLPLD 185
Query: 691 KDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCP 512
K+A +ILVAGTH D++GYQC GWTI W G SG T GT+ILEAIQ TE Y++ P
Sbjct: 186 KNATKILVAGTHPDNLGYQCXGWTITWQGLSGNTTKGTTILEAIQSAXSPTTEXXYQENP 365
Score = 113 bits (241), Expect = 2e-024
Identities = 51/102 (50%), Positives = 65/102 (63%)
Frame = +3 / -2
Query: 561 MASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRS 740
+AS ++VP V+FPL+PCH IV P H* P S VPAT IL A L+ G GL PFF
Sbjct: 316 IASRIVVPLVVFPLNPCHVIVHPXH**PRLSG*VPATRILVAFLSKGSKGLLSDFPFFNK 137
Query: 741 TKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
T+D TAS A++ C+L P+ +R GCS +P +N TLRI
Sbjct: 136 TRDFLTASLANSLCALLPSWLARLGFAIGCSKSPMVNFTLRI 11
>gb|DR099098.1|DR099098 STRR1_53_D05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_53_D05_A033 3', mRNA sequence
Length = 672
Score = 109 bits (232), Expect(2) = 1e-043
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = -3 / +3
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGD+DF G LP TW ++VDQLP++ GD Y PLFP+
Sbjct: 222 LPLVDAFVAAWLPGTEGRGVTDVIFGDYDFEGKLPRTWFRNVDQLPMNVGDKRYHPLFPL 401
Query: 130 GYGL 119
G+GL
Sbjct: 402 GFGL 413
Score = 88.1 bits (186), Expect(2) = 1e-043
Identities = 37/71 (52%), Positives = 47/71 (66%)
Frame = -3 / +3
Query: 532 VVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLV 353
VVY++ P ++ GFSY +VVVGE PYAE GD +L+IP G D I V + LV
Sbjct: 3 VVYQQNPDANYVKEQGFSYGIVVVGEAPYAEMFGDNLNLTIPMGGGDTIKNVCGSLKCLV 182
Query: 352 IVISGRPLIIE 320
I+ISGRPL+IE
Sbjct: 183 ILISGRPLVIE 215
>gb|BX680507.1|BX680507 BX680507 RS Pinus pinaster cDNA clone RS44E12, mRNA sequence
Length = 611
Score = 177 bits (380), Expect = 1e-043
Identities = 74/108 (68%), Positives = 87/108 (80%)
Frame = -3 / +3
Query: 871 RRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLA 692
RRILRVKF G+FEHP ++ SL++ +G K HR LAREAVRKSLVLLKNGK +KP LPL
Sbjct: 288 RRILRVKFTMGLFEHPMANPSLVNQLGSKAHRELAREAVRKSLVLLKNGKSDSKPLLPLN 467
Query: 691 KDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELV 548
K+A +ILVAGTHAD++GYQCGGWTI W G SG T GT+ILEAI+ V
Sbjct: 468 KNAAKILVAGTHADNLGYQCGGWTITWQGLSGNSTKGTTILEAIKSTV 611
Score = 111 bits (237), Expect = 7e-024
Identities = 52/106 (49%), Positives = 65/106 (61%)
Frame = +3 / -2
Query: 549 TNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLP 728
T +AS ++VP V FPL+PC IV PPH* P SA VPAT I A L G GL P
Sbjct: 610 TVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIFAAFLFKGSKGLLSDFP 431
Query: 729 FFRSTKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
FF ST+D TAS A++ C+L P+ +R GCS +P +N TL+I
Sbjct: 430 FFNSTRDFLTASLANSLCALLPSWLTRLGLAMGCSKSPMVNFTLKI 293
>gb|DR099363.1|DR099363 STRR1_55_C05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_55_C05_A033 3', mRNA sequence
Length = 665
Score = 109 bits (232), Expect(2) = 1e-042
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = -3 / +2
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGD+DF G LP TW ++VDQLP++ GD Y PLFP+
Sbjct: 215 LPLVDAFVAAWLPGTEGRGVTDVIFGDYDFEGKLPRTWFRNVDQLPMNVGDKRYHPLFPL 394
Query: 130 GYGL 119
G+GL
Sbjct: 395 GFGL 406
Score = 84.5 bits (178), Expect(2) = 1e-042
Identities = 35/69 (50%), Positives = 45/69 (65%)
Frame = -3 / +2
Query: 526 YEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIV 347
Y++ P ++ GFSY +VVVGE PYAE GD +L+IP G D I V + LVI+
Sbjct: 2 YQQNPDANYVKEQGFSYGIVVVGEAPYAEMFGDNLNLTIPMGGGDTIKNVCGSLKCLVIL 181
Query: 346 ISGRPLIIE 320
ISGRPL+IE
Sbjct: 182 ISGRPLVIE 208
Score = 76.7 bits (161), Expect(3) = 5e-021
Identities = 35/67 (52%), Positives = 47/67 (70%)
Frame = +3 / -3
Query: 99 LSLRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGS 278
+ + ++ +P P G G * SP +G+*ST L+HV G+ P+KS*SPK SV P PS+PGS
Sbjct: 426 ICIYDVVNPKPNGKRG**RLSPTFMGS*STFLNHVLGSFPSKS*SPKITSVTPRPSVPGS 247
Query: 279 QAATRAS 299
AAT+AS
Sbjct: 246 HAATKAS 226
Score = 37.3 bits (75), Expect(3) = 5e-021
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +3 / -3
Query: 378 TRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENP 488
T +I S P GI++ LSP SA G SPTTT ENP
Sbjct: 150 TFLIVSPPPMGIVKLRLSPNISA*GASPTTTIPYENP 40
Score = 24.9 bits (48), Expect(3) = 5e-021
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3 / -3
Query: 321 SIINGLPDITITR 359
SI +GLPDI ITR
Sbjct: 207 SITSGLPDIKITR 169
>gb|DR068751.1|DR068751 RTDK1_2_E04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_2_E04_A029 5', mRNA sequence
Length = 780
Score = 171 bits (369), Expect = 4e-042
Identities = 71/105 (67%), Positives = 83/105 (79%)
Frame = -3 / +2
Query: 871 RRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLA 692
RRILRVKF G+FE P ++ SL + +G KEHR LAREAVRKSLVLLKNGK N P LPL
Sbjct: 446 RRILRVKFTMGLFEQPLANPSLANQLGSKEHRELAREAVRKSLVLLKNGKSMNNPLLPLN 625
Query: 691 KDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQ 557
K+A +ILV GTHAD++GYQCGGWTI W G SG T+GT+ LEAI+
Sbjct: 626 KNASKILVVGTHADNLGYQCGGWTIEWQGLSGNSTIGTTFLEAIK 760
Score = 116 bits (248), Expect = 2e-025
Identities = 54/106 (50%), Positives = 68/106 (64%)
Frame = +3 / -1
Query: 549 TNSCMASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLP 728
T + +AS +VP V FPL+PCH+IV PPH* P SA VP T IL A L G GLF P
Sbjct: 768 TANLIASRNVVPIVEFPLNPCHSIVHPPH**PRLSA*VPTTRILEAFLFKGSKGLFIDFP 589
Query: 729 FFRSTKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
FF +T+D TAS A++ CSL P+ +R GCS +P +N TL+I
Sbjct: 588 FFNNTRDFLTASLANSLCSLLPSWLARLGLARGCSKSPIVNFTLKI 451
>gb|AW754572.1|AW754572 PC03H01 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC03H01, mRNA sequence
Length = 505
Score = 111 bits (237), Expect(2) = 7e-042
Identities = 42/70 (60%), Positives = 53/70 (75%)
Frame = -3 / +3
Query: 328 IIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNY 149
++ + L +EA VAAWLPGSEG G+TD +FGD+ F G L TW KSVDQLP++ GD +Y
Sbjct: 162 LVITPYLPLVEAFVAAWLPGSEGQGVTDVIFGDYGFQGKLSRTWFKSVDQLPMNVGDKHY 341
Query: 148 DPLFPVGYGL 119
DPLFP G+GL
Sbjct: 342 DPLFPFGFGL 371
Score = 79.9 bits (168), Expect(2) = 7e-042
Identities = 32/55 (58%), Positives = 39/55 (70%)
Frame = -3 / +3
Query: 487 GFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLII 323
GFSYA+VVVGE PYAE GD +L+IP G D I V + LVI++SGRPL+I
Sbjct: 6 GFSYAIVVVGEAPYAETAGDNLNLTIPLGGDDTINNVCGSVKCLVILVSGRPLVI 170
Score = 73.5 bits (154), Expect(2) = 2e-022
Identities = 36/62 (58%), Positives = 42/62 (67%)
Frame = +3 / -1
Query: 114 IFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATR 293
+ +P P GN GS* SP IG+*ST L+HV + P K *SPK SV P PS PGS AAT+
Sbjct: 376 VVNPKPKGNRGS*CLSPTFIGS*STLLNHVLESFPWKP*SPKITSVTPWPSDPGSHAATK 197
Query: 294 AS 299
AS
Sbjct: 196 AS 191
Score = 52.4 bits (108), Expect(2) = 2e-022
Identities = 28/55 (50%), Positives = 33/55 (60%)
Frame = +3 / -1
Query: 324 IINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENP 488
I +GLPD ITR T +I S P G+++ LSP SA G SPTTT A ENP
Sbjct: 169 ITSGLPDTKITRHFTEPHTLLIVSSPPKGMVKLRLSPAVSA*GASPTTTMAYENP 5
>gb|DR169308.1|DR169308 RTPHOS1_31_B02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_31_B02_A029 5', mRNA sequence
Length = 433
Score = 156 bits (336), Expect(2) = 7e-042
Identities = 67/101 (66%), Positives = 79/101 (78%)
Frame = -3 / +2
Query: 826 PFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADD 647
P ++ SL++ +G K HR LAREAVRKSLVLLKNGK +KP LPL K+A +ILVAGTHAD+
Sbjct: 131 PVANPSLVNQLGNKVHRELAREAVRKSLVLLKNGKSASKPLLPLNKNAAKILVAGTHADN 310
Query: 646 IGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVY 524
+GYQCGGWTI W G SG T GT+ILEAI+ V TEVVY
Sbjct: 311 LGYQCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVY 433
Score = 34.5 bits (69), Expect(2) = 7e-042
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3 / +1
Query: 871 RRILRVKFISGVFEHP 824
RRILRVKF G+FEHP
Sbjct: 85 RRILRVKFTMGLFEHP 132
>gb|AW290744.1|AW290744 NXNV046D07F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046D07 5', mRNA sequence
Length = 391
Score = 96.4 bits (204), Expect(2) = 2e-034
Identities = 36/63 (57%), Positives = 47/63 (74%)
Frame = -3 / +3
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGD+ F G L TW KSVDQLP++ D +Y LFP+
Sbjct: 165 LPLVDAFVAAWLPGTEGQGVTDVIFGDYRFXGKLARTWFKSVDQLPMNIXDXHYXXLFPL 344
Query: 130 GYG 122
G+G
Sbjct: 345 GFG 353
Score = 70.3 bits (147), Expect(2) = 2e-034
Identities = 30/52 (57%), Positives = 36/52 (69%)
Frame = -3 / +3
Query: 475 AVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
A+VVVGE PYAE GD +L+IP G D I V + LVI+ISGRPL+IE
Sbjct: 3 AIVVVGEAPYAETFGDNLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIE 158
>gb|CD027404.1|CD027404 NXNV046D07 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046D07 5' similar to Arabidopsis thaliana sequence
At5g20950 beta-D-glucan exohydrolase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 391
Score = 96.4 bits (204), Expect(2) = 2e-034
Identities = 36/63 (57%), Positives = 47/63 (74%)
Frame = -3 / +3
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGD+ F G L TW KSVDQLP++ D +Y LFP+
Sbjct: 165 LPLVDAFVAAWLPGTEGQGVTDVIFGDYRFXGKLARTWFKSVDQLPMNIXDXHYXXLFPL 344
Query: 130 GYG 122
G+G
Sbjct: 345 GFG 353
Score = 70.3 bits (147), Expect(2) = 2e-034
Identities = 30/52 (57%), Positives = 36/52 (69%)
Frame = -3 / +3
Query: 475 AVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
A+VVVGE PYAE GD +L+IP G D I V + LVI+ISGRPL+IE
Sbjct: 3 AIVVVGEAPYAETFGDNLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIE 158
>gb|CF666393.1|CF666393 RTCNT1_23_A10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_23_A10_A029 3', mRNA sequence
Length = 696
Score = 108 bits (230), Expect(2) = 7e-030
Identities = 40/64 (62%), Positives = 51/64 (79%)
Frame = -3 / +2
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGD+ F G L TW KSVDQLP++ GD +YDPLFP+
Sbjct: 110 LPLVDAFVAAWLPGTEGQGVTDVIFGDYRFQGKLARTWFKSVDQLPMNIGDQHYDPLFPL 289
Query: 130 GYGL 119
G+GL
Sbjct: 290 GFGL 301
Score = 42.8 bits (87), Expect(2) = 7e-030
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -3 / +2
Query: 421 DLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
+L+IP G D I V + LVI+ISGRPL+IE
Sbjct: 2 NLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIE 103
>gb|DR068670.1|DR068670 RTDK1_2_E04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_2_E04_A029 3', mRNA sequence
Length = 394
Score = 105 bits (223), Expect(2) = 9e-029
Identities = 39/64 (60%), Positives = 49/64 (76%)
Frame = -3 / +3
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A V AWL G EG G+TD +FGD+ F G LP TW KSVDQLP++ GD +YDPLFP+
Sbjct: 120 LPLVDAFVDAWLSGIEGQGVTDVIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPL 299
Query: 130 GYGL 119
G+GL
Sbjct: 300 GFGL 311
Score = 42.3 bits (86), Expect(2) = 9e-029
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = -3 / +3
Query: 430 DRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
D +L+IP +G D I V + LVI+ISGRPL+I+
Sbjct: 3 DNFNLTIPLSGGDTIKNVWGSLKCLVILISGRPLVIK 113
>gb|CO162092.1|CO162092 FLD1_33_D11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_D11_A029 3', mRNA sequence
Length = 644
Score = 108 bits (230), Expect(2) = 2e-025
Identities = 40/64 (62%), Positives = 51/64 (79%)
Frame = -3 / +1
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGD+ F G L TW KSVDQLP++ GD +YDPLFP+
Sbjct: 58 LPLVDAFVAAWLPGTEGQGVTDVIFGDYRFQGKLARTWFKSVDQLPMNIGDQHYDPLFPL 237
Query: 130 GYGL 119
G+GL
Sbjct: 238 GFGL 249
Score = 28.1 bits (55), Expect(2) = 2e-025
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3 / +1
Query: 358 LVIVISGRPLIIE 320
LVI+ISGRPL+IE
Sbjct: 13 LVILISGRPLVIE 51
>gb|BF518339.1|BF518339 NXSI_038_B12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_038_B12 5' similar to Arabidopsis thaliana
sequence At5g20950 beta-D-glucan exohydrolase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 364
Score = 93.6 bits (198), Expect(2) = 1e-024
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = -3 / +2
Query: 310 LEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPV 131
L ++A VAAWLPG+EG G+TD +FGD+ F G L TW K+V LP++ GD +Y LFP+
Sbjct: 101 LPLVDAFVAAWLPGTEGQGVTDVIFGDYRFQGKLARTWFKNVXXLPMNIGDQHYXXLFPL 280
Query: 130 GYGL 119
G+GL
Sbjct: 281 GFGL 292
Score = 40.0 bits (81), Expect(2) = 1e-024
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -3 / +2
Query: 412 IPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
IP G D I V + LVI+ISGRPL+IE
Sbjct: 2 IPLGGGDTIKTVCGSLKCLVILISGRPLVIE 94
>gb|AW064907.1|AW064907 ST37C08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST37C08, mRNA sequence
Length = 578
Score = 109 bits (232), Expect = 3e-023
Identities = 41/80 (51%), Positives = 56/80 (70%)
Frame = -3 / +2
Query: 328 IIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNY 149
++ L ++A VAAWLPG+EG G+TD +FGD+ F G L TW KS DQLP++AGD Y
Sbjct: 5 LVTEPYLPLVDAFVAAWLPGTEGQGVTDVIFGDYSFQGKLSRTWFKSADQLPMNAGDQQY 184
Query: 148 DPLFPVGYGLKMFRSDNDST 89
DP FP+G+GL ++N S+
Sbjct: 185 DPQFPLGFGLTTTVAENISS 244
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 533,141,128
Number of Sequences: 355925
Number of extensions: 8593851
Number of successful extensions: 51417
Number of sequences better than 1.0e-020: 45
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 12908374520
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)