TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763158.2.1
(826 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch... 149 7e-043
gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response R... 97 3e-041
gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism... 139 3e-041
gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus pota... 132 2e-038
gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus pota... 132 2e-038
gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine r... 145 2e-038
gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch... 79 2e-036
gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus add... 150 1e-035
gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2... 146 2e-034
gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response R... 89 2e-034
gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response R... 89 2e-034
gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calc... 89 7e-034
gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iro... 89 7e-034
gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch... 89 7e-034
gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calc... 89 7e-034
gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch... 89 7e-034
gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch... 89 7e-034
gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus cal... 89 7e-034
gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pin... 79 6e-033
gb|DR744663.1|DR744663 RTCU1_24_B09.b1_A029 Roots plus adde... 138 5e-032
gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus... 97 6e-032
gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus add... 136 2e-031
gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus add... 135 4e-031
gb|CX650807.1|CX650807 COLD1_48_F06.b1_A029 Root cold Pinus... 134 8e-031
gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered lob... 89 9e-031
gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinu... 115 3e-030
gb|DR013536.1|DR013536 HEAT1_19_H11.g1_A029 Root at 37 C fo... 132 3e-030
gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus pota... 79 4e-030
gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus pota... 79 4e-030
gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pin... 83 9e-030
gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo li... 111 1e-029
gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side ... 72 2e-029
gb|DR385366.1|DR385366 RTHG1_8_F01.b1_A029 Roots plus added... 128 4e-029
gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus ad... 89 8e-029
gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C fo... 89 8e-029
gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch... 89 9e-029
gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clon... 114 2e-028
gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine r... 78 6e-027
gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated wi... 104 1e-026
gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus... 73 1e-026
gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA... 102 4e-026
gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus... 89 6e-026
gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulf... 89 2e-025
gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciat... 67 2e-024
gb|CF390846.1|CF390846 RTDR3_2_H05.b1_A022 Loblolly pine ro... 110 2e-023
gb|CF392633.1|CF392633 RTDR3_5_G10.b1_A022 Loblolly pine ro... 108 6e-023
gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciat... 100 8e-023
gb|DR743165.1|DR743165 RTCU1_14_B08.b1_A029 Roots plus adde... 91 2e-022
gb|CO162371.1|CO162371 FLD1_34_H05.g1_A029 Root flooded Pin... 105 6e-022
gb|DR080921.1|DR080921 RTFEPL1_26_D08.b1_A029 Roots plus ad... 105 6e-022
gb|CF668848.1|CF668848 RTCNT1_39_C01.b1_A029 Root control P... 104 1e-021
gb|CX646890.1|CX646890 COLD1_12_D12.b1_A029 Root cold Pinus... 67 3e-021
gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C fo... 102 4e-021
>gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_C01_A034 3', mRNA sequence
Length = 903
Score = 149 bits (319), Expect(2) = 7e-043
Identities = 62/124 (50%), Positives = 84/124 (67%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
+G IG G S YP GL+D++ K++Y NPPIYITE+G GD D+G P+E AL+D
Sbjct: 301 NGVYIGSAEGLSEFRSYPAGLRDVISYTKHRYDNPPIYITESGYGDFDNGTTPLERALND 480
Query: 369 HKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRY 548
KRV Y H+++L ++ GA+V+GY AWSLLD+ EW SGY R+G+ YVD +D KRY
Sbjct: 481 SKRVKYHYEHLSSLLQAIREGADVRGYVAWSLLDSLEWSSGYNYRFGLHYVDYHDNLKRY 660
Query: 549 MKRS 560
+ S
Sbjct: 661 ARAS 672
Score = 45.5 bits (93), Expect(2) = 7e-043
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +3 / +1
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRFSKN 113
RLP FT +E E+L GS+D LG NYY++ F+ N
Sbjct: 133 RLPQFTIEEAEELKGSFDFLGFNYYSTDFTIN 228
>gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_18_E04_A033 5', mRNA sequence
Length = 813
Score = 96.8 bits (205), Expect(3) = 3e-041
Identities = 36/78 (46%), Positives = 54/78 (69%)
Frame = +3 / +1
Query: 327 VDHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERY 506
V++ D ++ AL+D R++Y H+ + ++ GA+V+G+FAWSL+DNFEW GYT R+
Sbjct: 454 VENSDPSLDEALNDTWRINYCSEHLHYILQAIREGADVRGFFAWSLMDNFEWGFGYTSRF 633
Query: 507 GIVYVDRNDGCKRYMKRS 560
G +Y+D DG KRY K S
Sbjct: 634 GFIYIDYKDGLKRYPKAS 687
Score = 61.1 bits (127), Expect(3) = 3e-041
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = +3 / +1
Query: 225 WIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGD 326
W+Y+Y GL+DLL+ +K +Y NPPI+ITENG+ D
Sbjct: 346 WLYVYAPGLRDLLIYIKQRYNNPPIFITENGVND 447
Score = 49.6 bits (102), Expect(3) = 3e-041
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3 / +1
Query: 6 RARERLPFFTDKEQEKLVGSYDMLGLNYYTSRFSKN 113
R +RL FT++E E+L GS+D LG+NYYTS+++ N
Sbjct: 136 RLGDRLLKFTEQESEQLKGSFDFLGMNYYTSQYAIN 243
>gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_C06_A032 3', mRNA sequence
Length = 870
Score = 139 bits (299), Expect(2) = 3e-041
Identities = 58/124 (46%), Positives = 80/124 (64%)
Frame = +3 / +3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
+G IG G S YP GL+D++ K++Y NPPIYITE G D D+G P++ AL+D
Sbjct: 192 NGVYIGSDEGVSDFRSYPAGLRDVINYTKHRYNNPPIYITETGYADFDNGTTPLQRALND 371
Query: 369 HKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRY 548
R+ Y H++ L +S GA+V+GY AWSL+D+FEW SGY R+G+ +VD D KRY
Sbjct: 372 SGRLKYHSEHLSHLLQSIKEGADVRGYIAWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRY 551
Query: 549 MKRS 560
+ S
Sbjct: 552 PRSS 563
Score = 49.2 bits (101), Expect(2) = 3e-041
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +3 / +3
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRFSKNIDISPN 131
+ RLP FT KE ++L GS+D LG NYYT++++ + PN
Sbjct: 18 KSRLPRFTAKEAKELKGSFDFLGYNYYTTQYTTSNPNPPN 137
>gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 3', mRNA sequence
Length = 811
Score = 132 bits (282), Expect(2) = 2e-038
Identities = 53/120 (44%), Positives = 77/120 (64%)
Frame = +3 / +2
Query: 201 IGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRV 380
IG G++ YP GL +LL KN+Y NP +YITE G D D+G + A++D RV
Sbjct: 350 IGSTEGDNDFRSYPAGLSELLNYTKNRYNNPTVYITETGYADFDNGTTSLARAVNDPGRV 529
Query: 381 HYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
Y +H++ L+E+ G++V+GY WSL+D+FEW G+T R+G+ YVD N+ KRY + S
Sbjct: 530 KYHYQHLSHLREAIRAGSDVRGYLVWSLMDDFEWSFGFTYRFGLYYVDLNNHLKRYARAS 709
Score = 47.3 bits (97), Expect(2) = 2e-038
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3 / +2
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRFSKNIDISPN 131
RLP F+++E + L GS+D +G NYY ++F N I PN
Sbjct: 167 RLPRFSNEEAKDLKGSFDFIGFNYYITQFCINNPIQPN 280
>gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 5', mRNA sequence
Length = 805
Score = 132 bits (282), Expect(2) = 2e-038
Identities = 53/120 (44%), Positives = 77/120 (64%)
Frame = +3 / +1
Query: 201 IGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRV 380
IG G++ YP GL +LL KN+Y NP +YITE G D D+G + A++D RV
Sbjct: 340 IGSTEGDNDFRSYPAGLSELLNYTKNRYNNPTVYITETGYADFDNGTTSLARAVNDPGRV 519
Query: 381 HYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
Y +H++ L+E+ G++V+GY WSL+D+FEW G+T R+G+ YVD N+ KRY + S
Sbjct: 520 KYHYQHLSHLREAIRAGSDVRGYLVWSLMDDFEWSFGFTYRFGLYYVDLNNHLKRYARAS 699
Score = 47.3 bits (97), Expect(2) = 2e-038
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3 / +1
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRFSKNIDISPN 131
RLP F+++E + L GS+D +G NYY ++F N I PN
Sbjct: 157 RLPRFSNEEAKDLKGSFDFIGFNYYITQFCINNPIQPN 270
>gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_D05_A021 5', mRNA
sequence
Length = 796
Score = 145 bits (312), Expect(2) = 2e-038
Identities = 60/124 (48%), Positives = 80/124 (64%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
+G +G G S YP GL+D++ K++Y NPPIYITE G D D+G +E AL D
Sbjct: 155 NGVYLGSDEGVSAFRSYPAGLRDVINYTKHRYNNPPIYITETGYADFDNGTTRLEEALHD 334
Query: 369 HKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRY 548
+RV Y +H++ L E+ GA+V+GY WSLLDNFEW SGY R+G+ Y+D ND KRY
Sbjct: 335 SRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRY 514
Query: 549 MKRS 560
+ S
Sbjct: 515 ARES 526
Score = 33.6 bits (67), Expect(2) = 2e-038
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3 / +2
Query: 33 TDKEQEKLVGSYDMLGLNYYTSRFSKN 113
+ +E + L GS+D LG NYY++ F+ N
Sbjct: 2 SSEEAKDLKGSFDFLGFNYYSTDFTIN 82
>gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_B04_A034 3', mRNA sequence
Length = 868
Score = 79.4 bits (167), Expect(3) = 2e-036
Identities = 28/74 (37%), Positives = 49/74 (66%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
+G IG ++W+Y+ P G++ L+ +K +Y NPP+ ITENGM D ++ +P++ AL+D
Sbjct: 272 NGRAIGDKASSAWLYIVPHGIRSLMNYIKRRYNNPPVIITENGMDDPNNILIPLKNALND 451
Query: 369 HKRVHYLQRHIATL 410
KR+ Y +++ L
Sbjct: 452 QKRIKYHAHYLSNL 493
Score = 68.4 bits (143), Expect(3) = 2e-036
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +3 / +2
Query: 429 GANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
G NV GYF WSLLDN+EW +GYT R+G+ +VD RY K S
Sbjct: 515 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKAS 646
Score = 43.2 bits (88), Expect(3) = 2e-036
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +3 / +2
Query: 6 RARERLPFFTDKEQEKLVGSYDMLGLNYYTSRFSKN 113
R RLP F+ +E ++ GS D +G+N+YT+ +++N
Sbjct: 89 RVGNRLPLFSSEESNRVKGSLDFVGINHYTTYYARN 196
>gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 5', mRNA sequence
Length = 667
Score = 150 bits (322), Expect = 1e-035
Identities = 59/123 (47%), Positives = 82/123 (66%)
Frame = +3 / +3
Query: 192 GNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDH 371
GN IG + W+Y+ P G + +L + +Y PPIY+TENGM D D ++ AL+D
Sbjct: 6 GNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALNDT 185
Query: 372 KRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYM 551
KRV+Y + ++ L E+ GA+V+GYFAWSL+DNFEW GYT+R+G+V+VD D KRY
Sbjct: 186 KRVNYFKGYLKALAEAIREGADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDYKDDLKRYP 365
Query: 552 KRS 560
K S
Sbjct: 366 KSS 374
>gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 3', mRNA sequence
Length = 786
Score = 146 bits (314), Expect = 2e-034
Identities = 61/124 (49%), Positives = 78/124 (62%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
DG IG G S YP GLKD++ K++Y NP IY+TE G D D G P+E AL+D
Sbjct: 110 DGVYIGSVEGVSTYRSYPAGLKDIINYTKHRYNNPTIYVTETGYVDFDDGKTPLEQALND 289
Query: 369 HKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRY 548
+RV Y H++ L E+ GA+++GY WSLLDNFEW GYT R+G+ YVD D KRY
Sbjct: 290 SRRVMYHSEHLSELLEAISEGADIRGYLVWSLLDNFEWSFGYTYRFGLYYVDYKDNLKRY 469
Query: 549 MKRS 560
+ S
Sbjct: 470 PRAS 481
>gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 5', mRNA sequence
Length = 864
Score = 89.0 bits (188), Expect(3) = 2e-034
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 327 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 148
Query: 510 IVYVD 524
+VYVD
Sbjct: 147 VVYVD 133
Score = 58.3 bits (121), Expect(3) = 2e-034
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 462 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 304
Score = 36.8 bits (74), Expect(3) = 2e-034
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3 / -1
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
RLP FT K+ + + GS D LG+N YT+ +
Sbjct: 627 RLPKFTKKQSQMVKGSIDYLGVNQYTAYY 541
>gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_E06_A033 5', mRNA sequence
Length = 788
Score = 89.0 bits (188), Expect(3) = 2e-034
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 368 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 189
Query: 510 IVYVD 524
+VYVD
Sbjct: 188 VVYVD 174
Score = 58.3 bits (121), Expect(3) = 2e-034
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 503 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 345
Score = 36.8 bits (74), Expect(3) = 2e-034
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3 / -1
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
RLP FT K+ + + GS D LG+N YT+ +
Sbjct: 668 RLPKFTKKQSQMVKGSIDYLGVNQYTAYY 582
>gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 5', mRNA sequence
Length = 932
Score = 89.0 bits (188), Expect(3) = 7e-034
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / +1
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 622 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 801
Query: 510 IVYVD 524
+VYVD
Sbjct: 802 VVYVD 816
Score = 58.3 bits (121), Expect(3) = 7e-034
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 487 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 645
Score = 35.0 bits (70), Expect(3) = 7e-034
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3 / +1
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
RLP FT ++ + + GS D LG+N YT+ +
Sbjct: 322 RLPKFTKEQSQMVKGSIDYLGVNQYTAYY 408
>gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_D09_A029 3', mRNA sequence
Length = 868
Score = 89.0 bits (188), Expect(3) = 7e-034
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / +3
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 492 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 671
Query: 510 IVYVD 524
+VYVD
Sbjct: 672 VVYVD 686
Score = 58.3 bits (121), Expect(3) = 7e-034
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / +3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 357 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 515
Score = 35.0 bits (70), Expect(3) = 7e-034
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3 / +3
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
RLP FT ++ + + GS D LG+N YT+ +
Sbjct: 192 RLPKFTKEQSQMVKGSIDYLGVNQYTAYY 278
>gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 3', mRNA sequence
Length = 865
Score = 89.0 bits (188), Expect(3) = 7e-034
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 379 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 200
Query: 510 IVYVD 524
+VYVD
Sbjct: 199 VVYVD 185
Score = 58.3 bits (121), Expect(3) = 7e-034
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 514 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 356
Score = 35.0 bits (70), Expect(3) = 7e-034
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3 / -1
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
RLP FT ++ + + GS D LG+N YT+ +
Sbjct: 679 RLPKFTKEQSQMVKGSIDYLGVNQYTAYY 593
>gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 3', mRNA sequence
Length = 865
Score = 89.0 bits (188), Expect(3) = 7e-034
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / +1
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 481 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 660
Query: 510 IVYVD 524
+VYVD
Sbjct: 661 VVYVD 675
Score = 58.3 bits (121), Expect(3) = 7e-034
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 346 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 504
Score = 35.0 bits (70), Expect(3) = 7e-034
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3 / +1
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
RLP FT ++ + + GS D LG+N YT+ +
Sbjct: 181 RLPKFTKEQSQMVKGSIDYLGVNQYTAYY 267
>gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 3', mRNA sequence
Length = 794
Score = 89.0 bits (188), Expect(3) = 7e-034
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / +2
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 410 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 589
Query: 510 IVYVD 524
+VYVD
Sbjct: 590 VVYVD 604
Score = 58.3 bits (121), Expect(3) = 7e-034
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 275 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 433
Score = 35.0 bits (70), Expect(3) = 7e-034
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3 / +2
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
RLP FT ++ + + GS D LG+N YT+ +
Sbjct: 110 RLPKFTKEQSQMVKGSIDYLGVNQYTAYY 196
>gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 5', mRNA sequence
Length = 756
Score = 89.0 bits (188), Expect(3) = 7e-034
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 351 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 172
Query: 510 IVYVD 524
+VYVD
Sbjct: 171 VVYVD 157
Score = 58.3 bits (121), Expect(3) = 7e-034
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 486 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 328
Score = 35.0 bits (70), Expect(3) = 7e-034
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3 / -1
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
RLP FT ++ + + GS D LG+N YT+ +
Sbjct: 651 RLPKFTKEQSQMVKGSIDYLGVNQYTAYY 565
>gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_C02_A029 5', mRNA sequence
Length = 687
Score = 89.0 bits (188), Expect(3) = 7e-034
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / -3
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 352 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 173
Query: 510 IVYVD 524
+VYVD
Sbjct: 172 VVYVD 158
Score = 58.3 bits (121), Expect(3) = 7e-034
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / -3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 487 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 329
Score = 35.0 bits (70), Expect(3) = 7e-034
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3 / -3
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
RLP FT ++ + + GS D LG+N YT+ +
Sbjct: 652 RLPKFTKEQSQMVKGSIDYLGVNQYTAYY 566
>gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 3', mRNA sequence
Length = 751
Score = 79.4 bits (167), Expect(3) = 6e-033
Identities = 28/74 (37%), Positives = 49/74 (66%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
+G IG ++W+Y+ P G++ L+ +K +Y NPP+ ITENGM D ++ +P++ AL+D
Sbjct: 154 NGRAIGDKASSAWLYIVPHGIRSLMNYIKRRYNNPPVIITENGMDDPNNILIPLKNALND 333
Query: 369 HKRVHYLQRHIATL 410
KR+ Y +++ L
Sbjct: 334 QKRIKYHAHYLSNL 375
Score = 68.4 bits (143), Expect(3) = 6e-033
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +3 / +1
Query: 429 GANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
G NV GYF WSLLDN+EW +GYT R+G+ +VD RY K S
Sbjct: 397 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKAS 528
Score = 31.3 bits (62), Expect(3) = 6e-033
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +3 / +1
Query: 39 KEQEKLVGSYDMLGLNYYTSRFSKN 113
+E ++ GS D +G+N+YT+ +++N
Sbjct: 4 EESNRVKGSLDFVGINHYTTYYARN 78
>gb|DR744663.1|DR744663 RTCU1_24_B09.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B09_A029 3', mRNA sequence
Length = 727
Score = 138 bits (296), Expect = 5e-032
Identities = 57/124 (45%), Positives = 80/124 (64%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
+G IG G S YP GL+D++ +K++Y NPPIYITE G D D+G P++ AL+D
Sbjct: 106 NGVYIGSDEGVSDFRSYPAGLRDVINYIKHRYNNPPIYITETGYADFDNGTTPLQRALND 285
Query: 369 HKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRY 548
R+ Y H++ L +S GA+V+GY WSL+D+FEW SGY R+G+ +VD D KRY
Sbjct: 286 SGRLKYHSEHLSHLLQSIKEGADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRY 465
Query: 549 MKRS 560
+ S
Sbjct: 466 PRSS 477
>gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_F11_A029 3', mRNA sequence
Length = 805
Score = 96.8 bits (205), Expect(2) = 6e-032
Identities = 36/78 (46%), Positives = 54/78 (69%)
Frame = +3 / +3
Query: 327 VDHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERY 506
V++ D ++ AL+D R++Y H+ + ++ GA+V+G+FAWSL+DNFEW GYT R+
Sbjct: 189 VENSDPSLDEALNDTWRINYCSEHLHYILQAIREGADVRGFFAWSLMDNFEWGFGYTSRF 368
Query: 507 GIVYVDRNDGCKRYMKRS 560
G +Y+D DG KRY K S
Sbjct: 369 GFIYIDYKDGLKRYPKAS 422
Score = 61.1 bits (127), Expect(2) = 6e-032
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = +3 / +3
Query: 225 WIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGD 326
W+Y+Y GL+DLL+ +K +Y NPPI+ITENG+ D
Sbjct: 81 WLYVYAPGLRDLLIYIKQRYNNPPIFITENGVND 182
>gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 3', mRNA sequence
Length = 734
Score = 136 bits (291), Expect = 2e-031
Identities = 53/104 (50%), Positives = 71/104 (68%)
Frame = +3 / +3
Query: 249 LKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKESRDL 428
L+D++ K++Y NPPIYITE G D D+G +E AL D +RV Y +H++ L E+
Sbjct: 3 LRDVINYTKHRYNNPPIYITETGYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIRE 182
Query: 429 GANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
GA+V+GY WSLLDNFEW SGY R+G+ Y+D ND KRY + S
Sbjct: 183 GADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARES 314
>gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 5', mRNA sequence
Length = 770
Score = 135 bits (289), Expect = 4e-031
Identities = 52/104 (50%), Positives = 71/104 (68%)
Frame = +3 / +3
Query: 249 LKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKESRDL 428
++D++ K++Y NPPIYITE G D D+G +E AL D +RV Y +H++ L E+
Sbjct: 9 IRDVINYTKHRYNNPPIYITETGYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIRE 188
Query: 429 GANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
GA+V+GY WSLLDNFEW SGY R+G+ Y+D ND KRY + S
Sbjct: 189 GADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARES 320
>gb|CX650807.1|CX650807 COLD1_48_F06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_F06_A029 3', mRNA sequence
Length = 594
Score = 134 bits (287), Expect = 8e-031
Identities = 51/108 (47%), Positives = 73/108 (67%)
Frame = +3 / +2
Query: 237 YPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKE 416
YP GL+D++ +K++Y NPPIYITE G D D+G P++ AL+D R+ Y H++ L +
Sbjct: 26 YPAGLRDVINYIKHRYNNPPIYITETGYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQ 205
Query: 417 SRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
S GA+V+ Y WSL+D+FEW SGY R+G+ +VD D KRY + S
Sbjct: 206 SIKEGADVRSYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSS 349
>gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_B03_A022 3', mRNA sequence
Length = 667
Score = 89.0 bits (188), Expect(3) = 9e-031
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / +1
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 283 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 462
Query: 510 IVYVD 524
+VYVD
Sbjct: 463 VVYVD 477
Score = 58.3 bits (121), Expect(3) = 9e-031
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 148 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 306
Score = 24.4 bits (47), Expect(3) = 9e-031
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3 / +1
Query: 39 KEQEKLVGSYDMLGLNYYTSRF 104
++ + + GS D LG+N YT+ +
Sbjct: 4 EQSQMVKGSIDYLGVNQYTAYY 69
>gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_4_C03_A029 3', mRNA sequence
Length = 548
Score = 115 bits (246), Expect(2) = 3e-030
Identities = 45/89 (50%), Positives = 60/89 (67%)
Frame = +3 / +2
Query: 294 PIYITENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDN 473
PIYITE G D D+G P++ +L D KRV Y +H++ L ++ GA+V+GY W+LLDN
Sbjct: 158 PIYITETGYADFDNGTTPLKKSLQDSKRVKYHYQHLSNLLKAIREGADVRGYIVWALLDN 337
Query: 474 FEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
FEWF+GY R+G+ YVD KRY K S
Sbjct: 338 FEWFNGYNVRFGLNYVDYRHNLKRYAKAS 424
Score = 36.8 bits (74), Expect(2) = 3e-030
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPP 296
+G+ IG G S YP+G++D++ K++Y NPP
Sbjct: 52 NGDVIGSNEGISAFRSYPKGIRDVINYTKHRYNNPP 159
>gb|DR013536.1|DR013536 HEAT1_19_H11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_H11_A029 5', mRNA sequence
Length = 729
Score = 132 bits (283), Expect = 3e-030
Identities = 55/124 (44%), Positives = 77/124 (62%)
Frame = +3 / -2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
+G IG G S YP GL+ ++ K++Y NPPIYITE G D D+G P++ AL+D
Sbjct: 629 NGVYIGSDEGVSDFRSYPAGLRGVINYTKHRYNNPPIYITETGYADFDNGTTPLQRALND 450
Query: 369 HKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRY 548
R+ Y H++ L + GA+V+GY WSL+D+FEW SGY R+G+ +VD D KRY
Sbjct: 449 SGRLKYHSEHLSHLLQGIKEGADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRY 270
Query: 549 MKRS 560
+ S
Sbjct: 269 PRSS 258
>gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D02_A029 3', mRNA sequence
Length = 863
Score = 79.4 bits (167), Expect(2) = 4e-030
Identities = 29/61 (47%), Positives = 41/61 (67%)
Frame = +3 / -1
Query: 237 YPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKE 416
YP GLKD++ K++Y NPP+Y+TE G D D G P+E AL+D +RV Y H++ L E
Sbjct: 665 YPAGLKDIINYTKHRYNNPPLYVTETGYADFDDGTTPLEQALNDSRRVMYHSEHLSELLE 486
Query: 417 S 419
+
Sbjct: 485 A 483
Score = 72.5 bits (152), Expect(2) = 4e-030
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +3 / -3
Query: 411 KESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
K + GA+++GY WSLLDNFEW GY R+G+ YVD D KRY K S
Sbjct: 405 KNNGSEGADIRGYLVWSLLDNFEWAHGYNYRFGLYYVDYKDNLKRYPKAS 256
>gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D02_A029 5', mRNA sequence
Length = 849
Score = 79.4 bits (167), Expect(2) = 4e-030
Identities = 29/61 (47%), Positives = 41/61 (67%)
Frame = +3 / -1
Query: 237 YPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKE 416
YP GLKD++ K++Y NPP+Y+TE G D D G P+E AL+D +RV Y H++ L E
Sbjct: 654 YPAGLKDIINYTKHRYNNPPLYVTETGYADFDDGTTPLEQALNDSRRVMYHSEHLSELLE 475
Query: 417 S 419
+
Sbjct: 474 A 472
Score = 72.5 bits (152), Expect(2) = 4e-030
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +3 / -3
Query: 411 KESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
K + GA+++GY WSLLDNFEW GY R+G+ YVD D KRY K S
Sbjct: 394 KNNGSEGADIRGYLVWSLLDNFEWAHGYNYRFGLYYVDYKDNLKRYPKAS 245
>gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_36_C02_A029 3', mRNA sequence
Length = 649
Score = 82.6 bits (174), Expect(2) = 9e-030
Identities = 30/74 (40%), Positives = 48/74 (64%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
DG IG + W+Y+ P+G++ L+ +K +Y NPP+ ITENGM D + +P++ AL D
Sbjct: 11 DGKAIGDKASSIWLYIVPQGIRSLMNYIKQRYNNPPVIITENGMDDSNDIFIPLKKALKD 190
Query: 369 HKRVHYLQRHIATL 410
KR+ YL +++ L
Sbjct: 191 QKRIKYLTDYLSNL 232
Score = 68.0 bits (142), Expect(2) = 9e-030
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +3 / +2
Query: 429 GANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
G NV GYF WSLLDN+EW +GYT R+G+ +VD RY K S
Sbjct: 254 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKDS 385
>gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACW86 3' end, mRNA sequence
Length = 754
Score = 111 bits (237), Expect(2) = 1e-029
Identities = 44/97 (45%), Positives = 64/97 (65%)
Frame = +3 / +3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
+GN IG + W+Y+ P G + +L + +Y PPIY+TENGM D D ++ AL+D
Sbjct: 462 EGNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALND 641
Query: 369 HKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFE 479
KRV+Y + ++ L E+ GA+V+GYFAWSL+DNFE
Sbjct: 642 TKRVNYFKGYLKALAEAIWEGADVRGYFAWSLIDNFE 752
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3 / +3
Query: 15 ERLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
+RLP F+ E L GS D LGLN+YT+R+
Sbjct: 297 DRLPQFSPDEVAVLRGSSDFLGLNHYTTRY 386
>gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_101_H03 5' similar to Arabidopsis thaliana
sequence At5g54570 beta-glucosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 71.6 bits (150), Expect(3) = 2e-029
Identities = 27/73 (36%), Positives = 47/73 (64%)
Frame = +3 / +2
Query: 192 GNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDH 371
G IG + W+Y+ P G++ L++ +K +Y NPPI+ITENG+ D + + ++ AL D
Sbjct: 158 GVMIGERGASRWLYVVPWGIRSLMIYIKQRYDNPPIFITENGIDDTNSPLISLDKALQDT 337
Query: 372 KRVHYLQRHIATL 410
KR+ Y + +++ L
Sbjct: 338 KRIDYHRDYLSNL 376
Score = 65.2 bits (136), Expect(3) = 2e-029
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +3 / +2
Query: 429 GANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
G +V+GYF WSLLDN+EW SG+T R+G+ +VD RY K S
Sbjct: 398 GCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYXXNLTRYPKAS 529
Score = 30.4 bits (60), Expect(3) = 2e-029
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +3 / +2
Query: 42 EQEKLVGSYDMLGLNYYTSRFSKN 113
+ + L GS+D +G+N+YT+ +++N
Sbjct: 8 QSKLLRGSFDFVGINHYTTIYTRN 79
>gb|DR385366.1|DR385366 RTHG1_8_F01.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F01_A029 3', mRNA sequence
Length = 558
Score = 128 bits (275), Expect = 4e-029
Identities = 49/108 (45%), Positives = 71/108 (65%)
Frame = +3 / +2
Query: 237 YPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKE 416
YP GL+ ++ K++Y +PPIYITE G D D+G P++ AL+D R+ Y H++ L +
Sbjct: 32 YPAGLRGVINYTKHRYNDPPIYITETGYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQ 211
Query: 417 SRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
GA+V+GY WSL+D+FEW SGY R+G+ +VD D KRY + S
Sbjct: 212 GIKEGADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSS 355
>gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_30_D11_A029 3', mRNA sequence
Length = 761
Score = 89.0 bits (188), Expect(2) = 8e-029
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / +2
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 257 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 436
Query: 510 IVYVD 524
+VYVD
Sbjct: 437 VVYVD 451
Score = 58.3 bits (121), Expect(2) = 8e-029
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 122 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 280
>gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_F02_A029 3', mRNA sequence
Length = 740
Score = 89.0 bits (188), Expect(2) = 8e-029
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / +1
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 217 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 396
Query: 510 IVYVD 524
+VYVD
Sbjct: 397 VVYVD 411
Score = 58.3 bits (121), Expect(2) = 8e-029
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 82 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 240
>gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_A03_A034 3', mRNA sequence
Length = 605
Score = 89.0 bits (188), Expect(2) = 9e-029
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / +2
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 215 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 394
Query: 510 IVYVD 524
+VYVD
Sbjct: 395 VVYVD 409
Score = 58.3 bits (121), Expect(2) = 9e-029
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+G PIGP ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 80 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 238
>gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clone RS67H05, mRNA sequence
Length = 585
Score = 114 bits (243), Expect(2) = 2e-028
Identities = 44/95 (46%), Positives = 63/95 (66%)
Frame = +3 / +1
Query: 237 YPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKE 416
YP GL+ ++ K++Y NPPIYITE G D D+G +E AL+D R+ Y H++ L +
Sbjct: 301 YPAGLRGVINYTKHRYNNPPIYITETGYADFDNGTTLLERALNDSGRMKYHSEHLSHLLQ 480
Query: 417 SRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYV 521
GA+V+GY WSL+D+FEW SGY R+G+ +V
Sbjct: 481 GIKDGADVRGYIIWSLMDSFEWSSGYNYRFGLYHV 585
Score = 33.6 bits (67), Expect(2) = 2e-028
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3 / +3
Query: 48 EKLVGSYDMLGLNYYTSRFSKNIDISPN 131
++L GS+D LG NYYT+ ++ + PN
Sbjct: 3 KELKGSFDFLGYNYYTTHYTTSNPNPPN 86
>gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_E07_A021 3', mRNA
sequence
Length = 587
Score = 78.0 bits (164), Expect(3) = 6e-027
Identities = 30/78 (38%), Positives = 48/78 (61%)
Frame = +3 / +2
Query: 327 VDHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERY 506
V+ ++ AL+D R+ + H+ + E+ G++++G++AWSL+DNFEW GY +
Sbjct: 248 VNESTTSLDEALNDTGRISFCSEHLWYILEAIREGSDIRGFYAWSLMDNFEWSLGYEC*F 427
Query: 507 GIVYVDRNDGCKRYMKRS 560
G Y+D DG KRY K S
Sbjct: 428 GFHYIDYKDGLKRYPKAS 481
Score = 57.9 bits (120), Expect(3) = 6e-027
Identities = 19/36 (52%), Positives = 30/36 (83%)
Frame = +3 / +2
Query: 219 NSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGD 326
+ ++Y+Y G+KDLL+ +K++Y NPPI+ITENG+ D
Sbjct: 134 SDYLYVYAPGIKDLLIYIKHQYNNPPIFITENGVND 241
Score = 23.1 bits (44), Expect(3) = 6e-027
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3 / +2
Query: 78 GLNYYTSRFSKN 113
G+NYYTS+++ N
Sbjct: 2 GVNYYTSQYAIN 37
>gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_5_F12_A032 5', mRNA sequence
Length = 836
Score = 104 bits (222), Expect(2) = 1e-026
Identities = 46/123 (37%), Positives = 71/123 (57%)
Frame = +3 / +3
Query: 192 GNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDH 371
G IG G +++ P G++ ++ +K Y NP I ITENG + + ++ L+D
Sbjct: 246 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDV 425
Query: 372 KRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYM 551
+R+ + ++ L + G++V+GYF WSLLDNFEW GYT R+G+ +VD KRY
Sbjct: 426 RRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYP 605
Query: 552 KRS 560
K S
Sbjct: 606 KLS 614
Score = 35.4 bits (71), Expect(2) = 1e-026
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3 / +3
Query: 6 RARERLPFFTDKEQEKLVGSYDMLGLNYYTSRFS 107
R RLP + + KL GS+D +G+N+YT+ ++
Sbjct: 63 RLGSRLPSISSELSAKLRGSFDYMGINHYTTLYA 164
>gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D12_A029 5', mRNA sequence
Length = 794
Score = 73.0 bits (153), Expect(2) = 1e-026
Identities = 26/70 (37%), Positives = 46/70 (65%)
Frame = +3 / +1
Query: 201 IGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRV 380
IG ++W+Y + G++ L+ +K +Y NPP+ ITENGM D ++ +P++ AL+D KR+
Sbjct: 1 IGDKAASAWLYPFSHGIRSLMNYIKQRYNNPPVIITENGMDDSNNILIPLKKALNDQKRI 180
Query: 381 HYLQRHIATL 410
Y +++ L
Sbjct: 181 KYHAHYLSNL 210
Score = 67.0 bits (140), Expect(2) = 1e-026
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +3 / +1
Query: 420 RDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
+D G V GYFAWSLLDN+EW +GYT R+G+ +VD R+ K S
Sbjct: 223 KDDGCKVGGYFAWSLLDNWEWAAGYTSRFGLYFVDYRHNLTRHPKAS 363
>gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA, complete cds
Length = 1909
Score = 102 bits (218), Expect(2) = 4e-026
Identities = 45/123 (36%), Positives = 70/123 (56%)
Frame = +3 / +3
Query: 192 GNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDH 371
G IG G +++ P G++ ++ +K Y NP I I ENG + + ++ L+D
Sbjct: 1287 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIIAENGYPESEESSSTLQENLNDV 1466
Query: 372 KRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYM 551
+R+ + ++ L + G++V+GYF WSLLDNFEW GYT R+G+ +VD KRY
Sbjct: 1467 RRIRFHGDCLSYLSAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYP 1646
Query: 552 KRS 560
K S
Sbjct: 1647 KLS 1655
Score = 35.4 bits (71), Expect(2) = 4e-026
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3 / +3
Query: 6 RARERLPFFTDKEQEKLVGSYDMLGLNYYTSRFS 107
R RLP + + KL GS+D +G+N+YT+ ++
Sbjct: 1104 RLGSRLPSISSELSAKLRGSFDYMGINHYTTLYA 1205
>gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_E05_A029 3', mRNA sequence
Length = 502
Score = 89.0 bits (188), Expect(2) = 6e-026
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / +3
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 120 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 299
Query: 510 IVYVD 524
+VYVD
Sbjct: 300 VVYVD 314
Score = 48.7 bits (100), Expect(2) = 6e-026
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3 / +3
Query: 207 PWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
P ++W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 3 PRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 143
>gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_F03_A029 3', mRNA sequence
Length = 628
Score = 89.0 bits (188), Expect(2) = 2e-025
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +3 / +3
Query: 330 DHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYG 509
D G++ + L+D RV+Y + ++ L + + GANV GYFAWSLLDNFEW SGYT R+G
Sbjct: 105 DPGNVTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFG 284
Query: 510 IVYVD 524
+VYVD
Sbjct: 285 VVYVD 299
Score = 46.9 bits (96), Expect(2) = 2e-025
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3 / +3
Query: 222 SWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
+W+Y+ P GL + +K YGNP + ++ENGM D + LP
Sbjct: 3 NWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 128
>gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP097C12, mRNA sequence
Length = 664
Score = 66.6 bits (139), Expect(2) = 2e-024
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3 / +2
Query: 420 RDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
R+ G +V+GYF WSLLDN+EW SG+T R+G+ +VD RY K S
Sbjct: 335 RNDGCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKAS 475
Score = 66.1 bits (138), Expect(2) = 2e-024
Identities = 26/73 (35%), Positives = 45/73 (61%)
Frame = +3 / +2
Query: 192 GNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDH 371
G IG + W+Y+ P G++ ++ +K +Y NPPI ITENG+ D + + ++ AL D
Sbjct: 104 GVMIGERGASRWLYVVPWGIRSSMIYIKQRYDNPPIIITENGIDDPNSPLISLDKALQDT 283
Query: 372 KRVHYLQRHIATL 410
KR+ Y + +++ L
Sbjct: 284 KRIDYHRDYLSNL 322
>gb|CF390846.1|CF390846 RTDR3_2_H05.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_H05_A022 3', mRNA
sequence
Length = 631
Score = 110 bits (234), Expect = 2e-023
Identities = 44/86 (51%), Positives = 57/86 (66%)
Frame = +3 / +1
Query: 303 ITENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEW 482
ITE G D D+G +E AL D +RV Y +H++ L E+ GA+V+GY WSLLDNFEW
Sbjct: 1 ITETGYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEW 180
Query: 483 FSGYTERYGIVYVDRNDGCKRYMKRS 560
SGY R+G+ Y+D ND KRY + S
Sbjct: 181 ASGYDYRFGLYYIDYNDNLKRYARES 258
>gb|CF392633.1|CF392633 RTDR3_5_G10.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_G10_A022 3', mRNA
sequence
Length = 615
Score = 108 bits (230), Expect = 6e-023
Identities = 43/85 (50%), Positives = 56/85 (65%)
Frame = +3 / +1
Query: 306 TENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWF 485
TE G D D+G +E AL D +RV Y +H++ L E+ GA+V+GY WSLLDNFEW
Sbjct: 1 TETGYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWA 180
Query: 486 SGYTERYGIVYVDRNDGCKRYMKRS 560
SGY R+G+ Y+D ND KRY + S
Sbjct: 181 SGYDYRFGLYYIDYNDNLKRYARES 255
>gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP043D06, mRNA sequence
Length = 675
Score = 100 bits (214), Expect(2) = 8e-023
Identities = 45/123 (36%), Positives = 69/123 (56%)
Frame = +3 / +2
Query: 192 GNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDH 371
G IG +++ P G++ ++ +K Y NP I ITENG + + ++ L D
Sbjct: 131 GVSIGERTAMDGLFVVPHGIQKIVEYVKEFYDNPIIIITENGYPESEESSSTLQENLSDV 310
Query: 372 KRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYM 551
+R+ + ++ L + G++V+GYF WSLLDNFEW GYT R+G+ +VD KRY
Sbjct: 311 RRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISAQKRYP 490
Query: 552 KRS 560
K S
Sbjct: 491 KLS 499
Score = 26.3 bits (51), Expect(2) = 8e-023
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = +3 / +2
Query: 60 GSYDMLGLNYYTSRFS 107
GS+D +G+N+YT+ ++
Sbjct: 2 GSFDYMGINHYTTLYA 49
>gb|DR743165.1|DR743165 RTCU1_14_B08.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_14_B08_A029 3', mRNA sequence
Length = 761
Score = 91.3 bits (193), Expect(2) = 2e-022
Identities = 39/107 (36%), Positives = 64/107 (59%)
Frame = +3 / +2
Query: 240 PEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRVHYLQRHIATLKES 419
P+ ++ L ++++ N PI + ENG + ++ +P+ AL+D R+ Q + + +
Sbjct: 266 PQSMQAALEYIEDRSHNIPIIVYENGFSEHNNSSIPLSEALNDQFRMDLHQDVLQYVLAA 445
Query: 420 RDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
G++V+GYF W+LLD+FE GYT +G+ YVD ND KRY K S
Sbjct: 446 IRNGSDVRGYFIWTLLDDFEVLDGYTRSFGLHYVDFNDNLKRYPKLS 586
Score = 36.8 bits (74), Expect(2) = 2e-022
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3 / +2
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYY 92
RLP FT ++ +KL GS D +G+N+Y
Sbjct: 53 RLPSFTKEQTQKLQGSLDFIGVNHY 127
>gb|CO162371.1|CO162371 FLD1_34_H05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H05_A029 5', mRNA sequence
Length = 738
Score = 105 bits (223), Expect = 6e-022
Identities = 46/123 (37%), Positives = 71/123 (57%)
Frame = +3 / -3
Query: 192 GNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDH 371
G IG G +++ P G++ ++ +K Y NP I ITENG + + ++ L+D
Sbjct: 724 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDV 545
Query: 372 KRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYM 551
+R+ + ++ L + G++V+GYF WSLLDNFEW GYT R+G+ +VD KRY
Sbjct: 544 RRIRFHGDCLSYLNAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYP 365
Query: 552 KRS 560
K S
Sbjct: 364 KLS 356
>gb|DR080921.1|DR080921 RTFEPL1_26_D08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_D08_A029 3', mRNA sequence
Length = 707
Score = 105 bits (223), Expect = 6e-022
Identities = 46/123 (37%), Positives = 71/123 (57%)
Frame = +3 / +2
Query: 192 GNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDH 371
G IG G +++ P G++ ++ +K Y NP I ITENG + + ++ L+D
Sbjct: 89 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTLQENLNDV 268
Query: 372 KRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYM 551
+R+ + ++ L + G++V+GYF WSLLDNFEW GYT R+G+ +VD KRY
Sbjct: 269 RRIRFHGDCLSYLNAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYP 448
Query: 552 KRS 560
K S
Sbjct: 449 KLS 457
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 484,715,334
Number of Sequences: 355925
Number of extensions: 7692118
Number of successful extensions: 53017
Number of sequences better than 1.0e-020: 60
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11969717190
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)