TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2751069.2.1
(940 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR384908.1|DR384908 RTHG1_5_H11.b1_A029 Roots plus added... 225 e-108
gb|CO166241.1|CO166241 FLD1_60_A12.g1_A029 Root flooded Pin... 245 e-100
gb|CO200632.1|CO200632 GEO2_8_C12.g1_A032 Root gravitropism... 238 2e-071
gb|BQ701554.1|BQ701554 NXSI_111_A02_F NXSI (Nsf Xylem Side ... 249 2e-065
gb|CO165410.1|CO165410 FLD1_54_H04.b1_A029 Root flooded Pin... 242 3e-063
gb|BX250453.1|BX250453 BX250453 Pinus pinaster differenciat... 237 6e-062
gb|BX250784.1|BX250784 BX250784 Pinus pinaster differenciat... 236 2e-061
gb|BG317976.1|BG317976 NXPV_008_A12_F NXPV (Nsf Xylem Plani... 135 7e-061
gb|AA867891.1|AA867891 1095 Loblolly pine NA Pinus taeda cD... 222 3e-057
gb|DR088734.1|DR088734 RTAL1_4_D02.b1_A029 Roots plus added... 191 8e-048
gb|CF470607.1|CF470607 RTDS1_13_D09.g1_A015 Drought-stresse... 160 1e-038
gb|BF777533.1|BF777533 NXSI_069_F09_F NXSI (Nsf Xylem Side ... 159 3e-038
gb|CF393839.1|CF393839 RTDS2_1_A05.g1_A021 Drought-stressed... 142 4e-033
gb|BE996850.1|BE996850 NXCI_103_C02_F NXCI (Nsf Xylem Compr... 140 2e-032
gb|BE607302.1|BE607302 NXCI_036_E08_F NXCI (Nsf Xylem Compr... 128 6e-029
gb|BI077174.1|BI077174 NXPV_089_G10_F NXPV (Nsf Xylem Plani... 119 3e-026
gb|BE187179.1|BE187179 NXNV_160_C01_F Nsf Xylem Normal wood... 109 3e-023
gb|BF609961.1|BF609961 NXSI_053_B01_F NXSI (Nsf Xylem Side ... 109 4e-023
gb|DR180787.1|DR180787 RTMNUT1_34_G11.g1_A029 Roots minus m... 56 2e-021
>gb|DR384908.1|DR384908 RTHG1_5_H11.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_5_H11_A029 3', mRNA sequence
Length = 845
Score = 225 bits (486), Expect(2) = e-108
Identities = 89/122 (72%), Positives = 104/122 (85%)
Frame = -2 / -2
Query: 915 AEMLPSGYLVRPCEGXGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTVALRHLR 736
AEM PSGYL+RPCEG GS++HIVDH+DLE WSVPEVLRPLYESS V+AQK+T ALRHLR
Sbjct: 757 AEMQPSGYLIRPCEGGGSLIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKVTMSALRHLR 578
Query: 735 QIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSVMGGDGIEDVVVACN 556
QIAQE S +VV GRQPA LRTFSQRL +GFN+A++GF DDGWS+MG DG+EDV + N
Sbjct: 577 QIAQEVSSDVVLGWGRQPAALRTFSQRLCKGFNEAVNGFTDDGWSLMGNDGMEDVTILVN 398
Query: 555 ST 550
S+
Sbjct: 397 SS 392
Score = 188 bits (405), Expect(2) = e-108
Identities = 78/110 (70%), Positives = 93/110 (84%)
Frame = -2 / -2
Query: 501 GGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFS 322
GGI+CAKASMLLQ+VPPA+LVRFLREHRSEWAD NIDAY A+S K S C++P R F
Sbjct: 334 GGILCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAASWKASPCTVPSSRVGGFG 155
Query: 321 GGQMIMPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDE 172
GGQ+I+PLAHTVE+EE LEV++LE LT +EALLSRD+ LLQLC+G+DE
Sbjct: 154 GGQVILPLAHTVEHEEFLEVIKLENHGLTXEEALLSRDMFLLQLCSGLDE 5
Score = 148 bits (317), Expect(3) = 2e-054
Identities = 67/107 (62%), Positives = 77/107 (71%)
Frame = +2 / +3
Query: 596 ITDQPSSLKPLMASLNPLLSL*LKVRRTAGCLPKAYTTSPLVS*AICLRWRSATVVIF*A 775
I D PSS+KPL ASL PL +L L VR AGCLP+ TTS S AI +WR A +V F A
Sbjct: 438 IKDHPSSVKPLTASLKPLHNLWLNVRNAAGCLPQPRTTSEDTSCAI*RKWRKADIVTFWA 617
Query: 776 TTLEDSYSGRSTSGTLHASRSRWSTICTIEPXPSHGRTKYPLGSISA 916
+T++DSY GRSTSGTLH S+S WSTI +P PSHGR KYPLG ISA
Sbjct: 618 STVDDSYRGRSTSGTLHGSKSIWSTI*IRDPPPSHGRIKYPLGCISA 758
Score = 74.8 bits (157), Expect(3) = 2e-054
Identities = 33/69 (47%), Positives = 43/69 (62%)
Frame = +2 / +3
Query: 296 ASGMIICPPENLMGRNPGSEHALVFNDEAKYASIL*SAHSDLCSLRNRTSTAGGTLCSNM 475
A+G + PP R G+ L F + A+ ASIL SAHSD CS + RTS AGGT C+++
Sbjct: 129 ANGRMTWPPPKPPTREDGTVQGLAFQEAAE*ASILLSAHSDRCSRKKRTSNAGGTFCNSI 308
Query: 476 DAFAQIMPP 502
+A A MPP
Sbjct: 309 EALAHRMPP 335
Score = 29.0 bits (57), Expect(3) = 2e-054
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2 / +3
Query: 170 FSSIPVQSWRRWMSLERRASS*VR 241
FSS P+QS R +SL+ +ASS VR
Sbjct: 3 FSSSPLQSCNRNISLDSKASSCVR 74
>gb|CO166241.1|CO166241 FLD1_60_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_60_A12_A029 5', mRNA sequence
Length = 776
Score = 245 bits (529), Expect(2) = e-100
Identities = 103/148 (69%), Positives = 124/148 (83%)
Frame = -2 / +1
Query: 501 GGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFS 322
GGI+CAKASMLLQ+VPPA+LVRFLREHRSEWAD NIDAY A++LK+S S+PG R FS
Sbjct: 289 GGILCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAAALKSSPYSVPGSRAGGFS 468
Query: 321 GGQMIMPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLV 142
G Q+I+PLAHTVE+EE LEV++LEG LT +EA+LSRD+ LLQLC+GIDE + G+ +LV
Sbjct: 469 GSQVILPLAHTVEHEEFLEVIKLEGHGLTQEEAVLSRDMFLLQLCSGIDENAAGACAELV 648
Query: 141 FAPIDEHFPDDAPLISSGFRVIPLDMKT 58
FAPIDE F DDAPL+ SGF VIPL +T
Sbjct: 649 FAPIDESFADDAPLLPSGFTVIPLASRT 732
Score = 142 bits (304), Expect(2) = e-100
Identities = 57/77 (74%), Positives = 67/77 (87%)
Frame = -2 / +1
Query: 780 VVAQKMTTVALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWS 601
V+AQKMT ALR LRQIAQE +GEVV+ GRQPAVLRTFSQRLSRGFN+A++GF DDGWS
Sbjct: 1 VLAQKMTIAALRRLRQIAQEATGEVVFGWGRQPAVLRTFSQRLSRGFNEAVNGFTDDGWS 180
Query: 600 VMGGDGIEDVVVACNST 550
+MG DG+EDV +A NS+
Sbjct: 181 LMGSDGVEDVTIAINSS 231
Score = 138 bits (296), Expect(2) = 1e-049
Identities = 73/149 (48%), Positives = 87/149 (58%)
Frame = +2 / -1
Query: 56 TVFISSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQSWRRWMSLERRASS* 235
+V + G+T PE GASS K SSIGA TS P FSSIP+QS +R +SL+R ASS*
Sbjct: 734 SVLDAKGITVNPEGSKGASSAKDSSIGAKTSSAHAPAAFSSIPLQSCKRNISLDRTASS* 555
Query: 236 VRGCPXXXXXXXXXXXXXV*ASGMIICPPENLMGRNPGSEHALVFNDEAKYASIL*SAHS 415
VR P V A G + PE +PG+ L F A+ AS+L SAHS
Sbjct: 554 VRP*PSSLMTSKNSSCSTVCAKGRMT*LPEKPPALDPGTL*GLDFKAAAE*ASMLESAHS 375
Query: 416 DLCSLRNRTSTAGGTLCSNMDAFAQIMPP 502
D CS + RTS AGGT C +MDAFAQ MPP
Sbjct: 374 DRCSRKKRTSNAGGTFCKSMDAFAQRMPP 288
Score = 79.0 bits (166), Expect(2) = 1e-049
Identities = 40/79 (50%), Positives = 48/79 (60%)
Frame = +2 / -1
Query: 542 IFLVELQAXXXXXXXXXXITDQPSSLKPLMASLNPLLSL*LKVRRTAGCLPKAYTTSPLV 721
+F EL A I D PSS+ P ASL PLL+L L VRRTAGCLP+ TTSP+
Sbjct: 239 LFGDELIAIVTSSTPSLPINDHPSSVNPFTASLKPLLNLWLNVRRTAGCLPQPKTTSPVA 60
Query: 722 S*AICLRWRSATVVIF*AT 778
S AI R+A +VIF A+
Sbjct: 59 SCAIWRNRRNAAIVIFWAS 3
Score = 60.2 bits (125), Expect(3) = 2e-024
Identities = 29/76 (38%), Positives = 46/76 (60%)
Frame = +1 / -3
Query: 553 *VASNNNVFNAISPHYRPTIIIETTNGIIKPPA*SLTKGP*NCRLPSQGIHYFSTCFLSN 732
*+ SN+++ ++I+ H P II ++ +G+++ PA* L K N L S +YF+ FL N
Sbjct: 228 *IDSNSDILHSITTH**PPIICKSIHGLVETPA*PLAKCSQNSWLSSPTKNYFTCGFLCN 49
Query: 733 LSKVAQCHSSHFLSNY 780
L+ QC + HFL Y
Sbjct: 48 LA*STQCCNCHFLGKY 1
Score = 55.1 bits (114), Expect(3) = 2e-024
Identities = 28/80 (35%), Positives = 44/80 (55%)
Frame = +1 / -3
Query: 91 RGNQWSIIRKMLINWCKHKLEGGTHRFLIYSSAKLEKVDVP*KKGFIMSKRLSFKADNFK 270
R Q SII K INWCK+K + I S+AKL + + + F++SK ++F+ ++
Sbjct: 699 RRKQRSIISKGFINWCKNKFSTCSSCIFINSAAKL*EKHISGQDSFLLSKAMTFQLNDL* 520
Query: 271 NLLVLHCVSKWHDHLPPRKS 330
LL+ H + D L P K+
Sbjct: 519 ELLMFHSMC*GKDDLTP*KA 460
Score = 35.4 bits (71), Expect(3) = 2e-024
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1 / -3
Query: 382 QIRINIVISPFRSMLPQKSYQYCRWDALQ*HGCLRTNNAS 501
+I IN+ I P S+L Q++Y+ C L HGCL T +A+
Sbjct: 408 RIGINVGICPL*SVLAQETYK*CGRHIL*EHGCLCTKDAT 289
>gb|CO200632.1|CO200632 GEO2_8_C12.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_C12_A032 5', mRNA sequence
Length = 819
Score = 238 bits (514), Expect(2) = 2e-071
Identities = 99/145 (68%), Positives = 119/145 (82%)
Frame = -2 / +2
Query: 501 GGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFS 322
GGI+CAKASMLLQ+VPPA+LVRFLREHRSEWAD NIDAY A+S K S C++P R F
Sbjct: 146 GGILCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAASWKASPCTVPSSRVGGFG 325
Query: 321 GGQMIMPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLV 142
GGQ+I+PLAHTVE+EE LEV++LE LT +EALLSRD+ LLQLC+G+DE +VG+ +LV
Sbjct: 326 GGQVILPLAHTVEHEEFLEVIKLENHGLTQEEALLSRDMFLLQLCSGLDENAVGACAELV 505
Query: 141 FAPIDEHFPDDAPLISSGFRVIPLD 67
FAPID D +PL+ SGFRVIPLD
Sbjct: 506 FAPIDASLADSSPLLPSGFRVIPLD 580
Score = 74.8 bits (157), Expect(3) = 4e-028
Identities = 33/69 (47%), Positives = 43/69 (62%)
Frame = +2 / -1
Query: 296 ASGMIICPPENLMGRNPGSEHALVFNDEAKYASIL*SAHSDLCSLRNRTSTAGGTLCSNM 475
A+G + PP R G+ L F + A+ ASIL SAHSD CS + RTS AGGT C+++
Sbjct: 351 ANGRMTWPPPKPPTREDGTVQGLAFQEAAE*ASILLSAHSDRCSRKKRTSNAGGTFCNSI 172
Query: 476 DAFAQIMPP 502
+A A MPP
Sbjct: 171 EALAHRMPP 145
Score = 63.4 bits (132), Expect(3) = 4e-028
Identities = 32/58 (55%), Positives = 38/58 (65%)
Frame = +2 / -1
Query: 68 SSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQSWRRWMSLERRASS*VR 241
S GMT KPE G S K +SIGA TS + PT FSS P+QS R +SL+ +ASS VR
Sbjct: 579 SKGMTLKPEGSKGELSAKDASIGAKTSSAQAPTAFSSSPLQSCNRNISLDSKASSCVR 406
Score = 51.9 bits (107), Expect(2) = 2e-071
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = -2 / +2
Query: 636 DAISGFNDDGWSVMGGDGIEDVVVACNST 550
+A++GF DDGWS+MG DG+EDV + NS+
Sbjct: 2 EAVNGFTDDGWSLMGNDGMEDVTILVNSS 88
Score = 24.9 bits (48), Expect(3) = 4e-028
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / -1
Query: 596 ITDQPSSLKPLMAS 637
I D PSS+KPL AS
Sbjct: 42 IKDHPSSVKPLTAS 1
>gb|BQ701554.1|BQ701554 NXSI_111_A02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_111_A02 5' similar to Arabidopsis thaliana
sequence At2g34710 homeodomain transcription factor
(ATHB-14) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 249 bits (539), Expect = 2e-065
Identities = 104/148 (70%), Positives = 126/148 (85%)
Frame = -2 / +2
Query: 501 GGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFS 322
GGI+CAKASMLLQ+VPPA+LVRFLREHRSEWAD NIDAY A++LK+S S+PG R FS
Sbjct: 59 GGILCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAAALKSSPYSVPGSRAGGFS 238
Query: 321 GGQMIMPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLV 142
G Q+I+PLAHTVE+EE LEV++LEG LT +EA+LSRD+ LLQLC+GIDE + G+ +LV
Sbjct: 239 GSQVILPLAHTVEHEEFLEVIKLEGHGLTQEEAVLSRDMFLLQLCSGIDENAAGACAELV 418
Query: 141 FAPIDEHFPDDAPLISSGFRVIPLDMKT 58
FAPIDE F DDAPL+ SGFRVIPL+ +T
Sbjct: 419 FAPIDESFADDAPLLPSGFRVIPLESRT 502
Score = 140 bits (300), Expect = 2e-032
Identities = 74/149 (49%), Positives = 87/149 (58%)
Frame = +2 / -1
Query: 56 TVFISSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQSWRRWMSLERRASS* 235
+V S G+T PE GASS K SSIGA TS P FSSIP+QS +R +SL+R ASS*
Sbjct: 504 SVLDSKGITLNPEGSKGASSAKDSSIGAKTSSAHAPAAFSSIPLQSCKRNISLDRTASS* 325
Query: 236 VRGCPXXXXXXXXXXXXXV*ASGMIICPPENLMGRNPGSEHALVFNDEAKYASIL*SAHS 415
VR P V A G + PE +PG+ L F A+ AS+L SAHS
Sbjct: 324 VRP*PSSLMTSKNSSCSTVCAKGRMT*LPEKPPALDPGTL*GLDFKAAAE*ASMLESAHS 145
Query: 416 DLCSLRNRTSTAGGTLCSNMDAFAQIMPP 502
D CS + RTS AGGT C +MDAFAQ MPP
Sbjct: 144 DRCSRKKRTSNAGGTFCKSMDAFAQRMPP 58
>gb|CO165410.1|CO165410 FLD1_54_H04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_54_H04_A029 3', mRNA sequence
Length = 840
Score = 242 bits (523), Expect = 3e-063
Identities = 101/145 (69%), Positives = 123/145 (84%)
Frame = -2 / -1
Query: 492 ICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFSGGQ 313
+CAKASMLLQ+VPPA+LVRFLREHRSEWAD NIDAY A++LK+S S+PG R FSG Q
Sbjct: 837 LCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAAALKSSPYSVPGSRAGGFSGSQ 658
Query: 312 MIMPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAP 133
+I+PLAHTVE+EE LEV++LEG LT +EA+LSRD+ LLQLC+GIDE + G+ +LVFAP
Sbjct: 657 VILPLAHTVEHEEFLEVIKLEGHGLTQEEAVLSRDMFLLQLCSGIDENAAGACAELVFAP 478
Query: 132 IDEHFPDDAPLISSGFRVIPLDMKT 58
IDE F DDAPL+ SGFRVIPL+ +T
Sbjct: 477 IDESFADDAPLLPSGFRVIPLESRT 403
Score = 133 bits (284), Expect = 2e-030
Identities = 71/145 (48%), Positives = 84/145 (57%)
Frame = +2 / +2
Query: 56 TVFISSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQSWRRWMSLERRASS* 235
+V S G+T PE GASS K SSIGA TS P FSSIP+QS +R +SL+R ASS*
Sbjct: 401 SVLDSKGITLNPEGSKGASSAKDSSIGAKTSSAHAPAAFSSIPLQSCKRNISLDRTASS* 580
Query: 236 VRGCPXXXXXXXXXXXXXV*ASGMIICPPENLMGRNPGSEHALVFNDEAKYASIL*SAHS 415
VR P V A G + PE +PG+ L F A+ AS+L SAHS
Sbjct: 581 VRP*PSSLMTSKNSSCSTVCAKGRMT*LPEKPPALDPGTL*GLDFKAAAE*ASMLESAHS 760
Query: 416 DLCSLRNRTSTAGGTLCSNMDAFAQ 490
D CS + RTS AGGT C +MDAFAQ
Sbjct: 761 DRCSRKKRTSNAGGTFCKSMDAFAQ 835
>gb|BX250453.1|BX250453 BX250453 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP037B05, mRNA sequence
Length = 680
Score = 237 bits (513), Expect = 6e-062
Identities = 99/145 (68%), Positives = 119/145 (82%)
Frame = -2 / +1
Query: 501 GGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFS 322
GGI+CAKASMLLQ+VPPA+LVRFLREHRSEWAD NIDAY A+S K S C++P R F
Sbjct: 46 GGILCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAASWKASPCTVPSSRIGGFG 225
Query: 321 GGQMIMPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLV 142
GGQ+I+PLAHTVE+EE LEV++LE LT +EALLSRD+ LLQLC+G+DE +VG+ +LV
Sbjct: 226 GGQVILPLAHTVEHEEFLEVIKLENNGLTQEEALLSRDMFLLQLCSGLDENAVGACAELV 405
Query: 141 FAPIDEHFPDDAPLISSGFRVIPLD 67
FAPID D +PL+ SGFRVIPLD
Sbjct: 406 FAPIDASLADSSPLLPSGFRVIPLD 480
Score = 126 bits (269), Expect = 3e-028
Identities = 65/145 (44%), Positives = 82/145 (56%)
Frame = +2 / -1
Query: 68 SSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQSWRRWMSLERRASS*VRGC 247
S GMT KP+ G S K +SIGA TS + PT FSS P+QS R +SL+ +ASS VR
Sbjct: 479 SRGMTLKPDGSKGELSAKDASIGAKTSSAQAPTAFSSSPLQSCNRNISLDSKASSCVRPL 300
Query: 248 PXXXXXXXXXXXXXV*ASGMIICPPENLMGRNPGSEHALVFNDEAKYASIL*SAHSDLCS 427
V A+G + PP R G+ L F + A+ ASIL SAHSD CS
Sbjct: 299 FSNLITSKNSSCSTVWANGRMTWPPPKPPIREDGTVQGLAFQEAAE*ASILLSAHSDRCS 120
Query: 428 LRNRTSTAGGTLCSNMDAFAQIMPP 502
+ RTS AGGT C++++A A MPP
Sbjct: 119 RKKRTSNAGGTFCNSIEALAHRMPP 45
>gb|BX250784.1|BX250784 BX250784 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041C02, mRNA sequence
Length = 653
Score = 236 bits (509), Expect = 2e-061
Identities = 94/122 (77%), Positives = 108/122 (88%)
Frame = -2 / +2
Query: 915 AEMLPSGYLVRPCEGXGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTVALRHLR 736
AEMLPSGYL++PCEG GSI+ IVDH+DLE WSVPEVLRPLYESS V+AQKMT ALR LR
Sbjct: 245 AEMLPSGYLIQPCEGGGSIIRIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTIAALRRLR 424
Query: 735 QIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSVMGGDGIEDVVVACN 556
QIAQE +GEVV+ GRQPAVLRTFSQRLSRGFN+A++GF DDGWS+MG DG+EDV +A N
Sbjct: 425 QIAQEATGEVVFGWGRQPAVLRTFSQRLSRGFNEAVNGFTDDGWSLMGSDGVEDVTIAIN 604
Query: 555 ST 550
S+
Sbjct: 605 SS 610
Score = 151 bits (324), Expect = 8e-036
Identities = 73/125 (58%), Positives = 84/125 (67%)
Frame = +2 / -3
Query: 542 IFLVELQAXXXXXXXXXXITDQPSSLKPLMASLNPLLSL*LKVRRTAGCLPKAYTTSPLV 721
+F EL A I D PSS+ P ASL PLL+L L VRRTAGCLP+ TTSP+
Sbjct: 618 LFGDELIAIVTSSTPSLPINDHPSSVNPFTASLKPLLNLWLNVRRTAGCLPQPKTTSPVA 439
Query: 722 S*AICLRWRSATVVIF*ATTLEDSYSGRSTSGTLHASRSRWSTICTIEPXPSHGRTKYPL 901
S AI R+A +VIF A+T++DSYSGR TSGTLH SRS STI +EP PS G KYPL
Sbjct: 438 SCAIWRNRRNAAIVIFWASTVDDSYSGRKTSGTLHGSRSM*STIRIMEPPPSQGCIKYPL 259
Query: 902 GSISA 916
GSISA
Sbjct: 258 GSISA 244
>gb|BG317976.1|BG317976 NXPV_008_A12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_008_A12 5' similar to Arabidopsis
thaliana sequence At2g34710 homeodomain transcription
factor (ATHB-14) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 533
Score = 135 bits (289), Expect(2) = 7e-061
Identities = 55/81 (67%), Positives = 66/81 (81%)
Frame = -2 / +1
Query: 792 ESSRVVAQKMTTVALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFND 613
ESS V+AQK+T ALRHLRQIAQE S +VV GRQPA LRTFSQRL +GFN+A++GF D
Sbjct: 1 ESSTVLAQKVTMSALRHLRQIAQEVSSDVVLGWGRQPAALRTFSQRLCKGFNEAVNGFTD 180
Query: 612 DGWSVMGGDGIEDVVVACNST 550
DGWS+MG DG+EDV + NS+
Sbjct: 181 DGWSLMGNDGMEDVTILVNSS 243
Score = 119 bits (255), Expect(2) = 7e-061
Identities = 51/76 (67%), Positives = 58/76 (76%)
Frame = -2 / +1
Query: 501 GGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFS 322
GGI+CAKASMLLQ+VPPA+LVRFLREHR EWAD NIDAY A+S S C++P R F
Sbjct: 301 GGILCAKASMLLQNVPPALLVRFLREHRXEWADSNIDAYSAASWXXSPCTVPSSRIGXFX 480
Query: 321 GGQMIMPLAHTVENEE 274
G I LAHTVE+EE
Sbjct: 481 XGXXIXXLAHTVEHEE 528
Score = 76.7 bits (161), Expect(2) = 5e-026
Identities = 36/65 (55%), Positives = 44/65 (67%)
Frame = +2 / -1
Query: 596 ITDQPSSLKPLMASLNPLLSL*LKVRRTAGCLPKAYTTSPLVS*AICLRWRSATVVIF*A 775
I D PSS+KPL ASL PL +L L VR AGCLP+ TTS S AI +WR A +V F A
Sbjct: 197 IKDHPSSVKPLTASLKPLHNLWLNVRNAAGCLPQPRTTSEDTSCAI*RKWRKADIVTFWA 18
Query: 776 TTLED 790
+T++D
Sbjct: 17 STVDD 3
Score = 61.6 bits (128), Expect(2) = 5e-026
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +2 / -1
Query: 338 RNPGSEHALVFNDEAKYASIL*SAHSDLCSLRNRTSTAGGTLCSNMDAFAQIMPP 502
R G+ L + A+ ASIL SAHS CS + RTS AGGT C++++A A MPP
Sbjct: 464 REDGTVQGLXXQEAAE*ASILLSAHSXRCSRKKRTSNAGGTFCNSIEALAHRMPP 300
>gb|AA867891.1|AA867891 1095 Loblolly pine NA Pinus taeda cDNA clone 0NA4N, mRNA sequence
Length = 605
Score = 222 bits (479), Expect = 3e-057
Identities = 93/138 (67%), Positives = 114/138 (82%)
Frame = -2 / +1
Query: 471 LLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFSGGQMIMPLAH 292
LLQ+VPPA+LVRFLREHRSEWAD NIDAY A++LK+S S+PG R FSG Q+I+PL H
Sbjct: 1 LLQNVPPALLVRFLREHRSEWADSNIDAYSAAALKSSPYSVPGSRAGGFSGSQVILPLXH 180
Query: 291 TVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPD 112
TVE+EE LEV++LEG LT +EA+LSR + LLQLC+GIDE + G+ +LVFAPIDE F D
Sbjct: 181 TVEHEEFLEVIKLEGHGLTQEEAVLSRXMFLLQLCSGIDENAAGACAELVFAPIDESFAD 360
Query: 111 DAPLISSGFRVIPLDMKT 58
DAPL+ SGFRVIPL+ +T
Sbjct: 361 DAPLLPSGFRVIPLESRT 414
Score = 115 bits (245), Expect = 6e-025
Identities = 63/137 (45%), Positives = 75/137 (54%)
Frame = +2 / -1
Query: 56 TVFISSGMTRKPEEINGASSGKCSSIGANTSWKEEPTDFSSIPVQSWRRWMSLERRASS* 235
+V S G+T PE GASS K SSIGA TS P FSSIP+QS +R + L+R ASS*
Sbjct: 416 SVLDSKGITLNPEGSKGASSAKDSSIGAKTSSAHAPAAFSSIPLQSCKRNIXLDRTASS* 237
Query: 236 VRGCPXXXXXXXXXXXXXV*ASGMIICPPENLMGRNPGSEHALVFNDEAKYASIL*SAHS 415
VR P V G + PE +PG+ L F A+ AS+L SAHS
Sbjct: 236 VRP*PSSLMTSKNSSCSTVCXKGRMT*LPEKPPALDPGTL*GLDFKAAAE*ASMLESAHS 57
Query: 416 DLCSLRNRTSTAGGTLC 466
D CS + RTS AGGT C
Sbjct: 56 DRCSRKKRTSNAGGTFC 6
>gb|DR088734.1|DR088734 RTAL1_4_D02.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_4_D02_A029 3', mRNA sequence
Length = 452
Score = 191 bits (411), Expect = 8e-048
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -2 / -1
Query: 420 RSEWADYNIDAYLASSLKTSACSLPGLRPMRFSGGQMIMPLAHTVENEEILEVVRLEGQP 241
RSEWAD NIDAY A++LK+S S+PG R FSG Q+I+PLAHTVE+EE LEV++LEG
Sbjct: 452 RSEWADSNIDAYSAAALKSSPYSVPGSRAGGFSGSQVILPLAHTVEHEEFLEVIKLEGHG 273
Query: 240 LTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPLDMK 61
LT +EA+LSRD+ LLQLC+GIDE + G+ +LVFAPIDE F DDAPL+ SGFRVIPLD +
Sbjct: 272 LTQEEAVLSRDMFLLQLCSGIDENAAGACAELVFAPIDESFADDAPLLPSGFRVIPLDQE 93
>gb|CF470607.1|CF470607 RTDS1_13_D09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_D09_A015 5', mRNA sequence
Length = 784
Score = 160 bits (344), Expect = 1e-038
Identities = 67/109 (61%), Positives = 84/109 (77%)
Frame = -2 / +3
Query: 393 DAYLASSLKTSACSLPGLRPMRFSGGQMIMPLAHTVENEEILEVVRLEGQPLTHDEALLS 214
DAY A+S K S C++P R F GGQ+I+PLAHTVE+EE LEV++LE LT +EALLS
Sbjct: 3 DAYSAASWKASPCTVPSSRVGGFGGGQVILPLAHTVEHEEFLEVIKLENHGLTQEEALLS 182
Query: 213 RDIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPLD 67
RD+ LLQLC+G+DE +VG+ +LVFAPID D +PL+ SGFRVIPLD
Sbjct: 183 RDMFLLQLCSGLDENAVGACAELVFAPIDASLADSSPLLPSGFRVIPLD 329
>gb|BF777533.1|BF777533 NXSI_069_F09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_069_F09 5' similar to Arabidopsis thaliana
sequence At4g32880 HD-zip transcription factor (athb-8)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 426
Score = 159 bits (341), Expect = 3e-038
Identities = 65/86 (75%), Positives = 72/86 (83%)
Frame = -2 / +1
Query: 915 AEMLPSGYLVRPCEGXGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTVALRHLR 736
AEMLPSGYL++PCEG GSI+ IVDH+DLE WSVPEVLRPLYESS V+AQKMT ALR LR
Sbjct: 169 AEMLPSGYLIQPCEGGGSIIRIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTIAALRRLR 348
Query: 735 QIAQETSGEVVYALGRQPAVLRTFSQ 658
QIAQE +GE + GRQP VLRTF Q
Sbjct: 349 QIAQEATGEXXFGWGRQPXVLRTFXQ 426
Score = 115 bits (246), Expect = 4e-025
Identities = 53/85 (62%), Positives = 61/85 (71%)
Frame = +2 / -2
Query: 662 LKVRRTAGCLPKAYTTSPLVS*AICLRWRSATVVIF*ATTLEDSYSGRSTSGTLHASRSR 841
L VRRT GCLP+ SP+ S AI R+A +VIF A+T++DSYSGR TSGTLH SRS
Sbjct: 422 LNVRRTXGCLPQPKXXSPVASCAIWRNRRNAAIVIFWASTVDDSYSGRKTSGTLHGSRSM 243
Query: 842 WSTICTIEPXPSHGRTKYPLGSISA 916
STI +EP PS G KYPLGSISA
Sbjct: 242 *STIRIMEPPPSQGCIKYPLGSISA 168
>gb|CF393839.1|CF393839 RTDS2_1_A05.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_A05_A021 5', mRNA sequence
Length = 806
Score = 142 bits (304), Expect = 4e-033
Identities = 58/92 (63%), Positives = 76/92 (82%)
Frame = -2 / +2
Query: 306 MPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPID 127
+PLAHTVE+EE LEV++LEG LT +EA+LSRD+ LLQLC+GIDE + G+ +LVFAPID
Sbjct: 2 LPLAHTVEHEEFLEVIKLEGHGLTQEEAVLSRDMFLLQLCSGIDENAAGACAELVFAPID 181
Query: 126 EHFPDDAPLISSGFRVIPLDMKTVKHH*QHYL 31
E F DDAPL+ SGFRVIPL+ +TV++ Q ++
Sbjct: 182 ESFADDAPLLPSGFRVIPLESRTVEYILQTFM 277
>gb|BE996850.1|BE996850 NXCI_103_C02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_103_C02 5' similar to Arabidopsis
thaliana sequence At1g52150 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 387
Score = 140 bits (300), Expect = 2e-032
Identities = 57/84 (67%), Positives = 71/84 (84%)
Frame = -2 / +3
Query: 309 IMPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPI 130
I+PLAHTVE+EE LEV++LEG LT +EA+LSRD+ LLQLC+GIDE + G+ +LVFAPI
Sbjct: 3 ILPLAHTVEHEEFLEVIKLEGHGLTQEEAVLSRDMFLLQLCSGIDENAAGACAELVFAPI 182
Query: 129 DEHFPDDAPLISSGFRVIPLDMKT 58
DE F DDAPL+ SGFRVIPL+ +T
Sbjct: 183 DESFADDAPLLPSGFRVIPLESRT 254
>gb|BE607302.1|BE607302 NXCI_036_E08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_036_E08 5' similar to Arabidopsis
thaliana sequence At2g34710 homeodomain transcription
factor (ATHB-14) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 238
Score = 128 bits (274), Expect = 6e-029
Identities = 54/79 (68%), Positives = 65/79 (82%)
Frame = -2 / +1
Query: 471 LLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKTSACSLPGLRPMRFSGGQMIMPLAH 292
LLQ+VPPA+LVRFLREHRSEWAD NIDAY A++LK+S S+PG R FSG Q+I+PLAH
Sbjct: 1 LLQNVPPALLVRFLREHRSEWADSNIDAYSAAALKSSPYSVPGSRAGGFSGSQVILPLAH 180
Query: 291 TVENEEILEVVRLEGQPLT 235
T E+EE LE ++LEG LT
Sbjct: 181 TXEHEEFLEXIKLEGHXLT 237
>gb|BI077174.1|BI077174 NXPV_089_G10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_089_G10 5' similar to Arabidopsis
thaliana sequence At2g34710 homeodomain transcription
factor (ATHB-14) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 319
Score = 119 bits (254), Expect = 3e-026
Identities = 50/81 (61%), Positives = 59/81 (72%)
Frame = -2 / +1
Query: 792 ESSRVVAQKMTTVALRHLRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFND 613
ESS V+AQK+T ALRHLRQIAQE S +VV GRQPA LRTF QRL +GFN +GF D
Sbjct: 1 ESSTVLAQKVTMSALRHLRQIAQEVSSDVVLGWGRQPAALRTFXQRLCKGFNXXXNGFTD 180
Query: 612 DGWSVMGGDGIEDVVVACNST 550
DGWS+MG +ED + NS+
Sbjct: 181 DGWSLMGNXXMEDXXILVNSS 243
>gb|BE187179.1|BE187179 NXNV_160_C01_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_160_C01 5' similar to Arabidopsis thaliana
sequence At2g34710 homeodomain transcription factor
(ATHB-14) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 109 bits (233), Expect = 3e-023
Identities = 44/68 (64%), Positives = 56/68 (82%)
Frame = -2 / +3
Query: 261 VRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFR 82
++LEG LT +EA+LSRD+ LLQLC+GIDE + G+ +LVFAPIDE F DDAPL+ SGFR
Sbjct: 3 IKLEGHGLTQEEAVLSRDMFLLQLCSGIDENAAGACAELVFAPIDESFADDAPLLPSGFR 182
Query: 81 VIPLDMKT 58
VIPL+ +T
Sbjct: 183 VIPLESRT 206
>gb|BF609961.1|BF609961 NXSI_053_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_053_B01 5' similar to Arabidopsis thaliana
sequence At4g32880 HD-zip transcription factor (athb-8)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 333
Score = 109 bits (232), Expect = 4e-023
Identities = 45/63 (71%), Positives = 50/63 (79%)
Frame = -2 / +3
Query: 915 AEMLPSGYLVRPCEGXGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTVALRHLR 736
AEMLPSGYL++PCE GSI+ IVDH+DLE WSVP LRPLYESS V+AQKMT ALR
Sbjct: 144 AEMLPSGYLIQPCEXGGSIIRIVDHMDLEPWSVPXXLRPLYESSTVLAQKMTIAALRXXX 323
Query: 735 QIA 727
IA
Sbjct: 324 XIA 332
>gb|DR180787.1|DR180787 RTMNUT1_34_G11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_G11_A029 5', mRNA sequence
Length = 480
Score = 56.1 bits (116), Expect(3) = 2e-021
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = -2 / +1
Query: 216 SRDIHLLQLCTGIDEKSVGSSFQLVFAPIDEHFPDDAPLISSGFRVIPLD 67
S + +LQLC GI + QLVFAP+D D+ PL+ SGFR+I ++
Sbjct: 265 SNETFILQLCNGISGTTASGWAQLVFAPVDASLSDELPLLPSGFRIITIN 414
Score = 55.1 bits (114), Expect(3) = 2e-021
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = -2 / +1
Query: 498 GIICAKASMLLQSVPPAVLVRFLREHRSEWADYNID 391
G + KAS+LLQ V P +L RFLREHR+EW DY ++
Sbjct: 1 GHLECKASLLLQEVSPTMLARFLREHRTEWMDYELN 108
Score = 29.5 bits (58), Expect(3) = 2e-021
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2 / +1
Query: 396 IDAYLASSLKTSACSLPGLRPMRFSGGQMIMPLAHTVENEEILEVVRLE 250
+D L + K S C + S Q+ +PL + + +E LEV++LE
Sbjct: 91 MDYELNFNYKASYCQNMQTAGLHGSFRQVSLPLTQSADQDESLEVIKLE 237
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 556,176,243
Number of Sequences: 355925
Number of extensions: 8750546
Number of successful extensions: 43865
Number of sequences better than 1.0e-020: 32
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 13872485480
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)