TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750951.2.1
(1014 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR054674.1|DR054674 RTCA1_18_G02.g1_A029 Roots minus cal... 169 2e-051
gb|CF666831.1|CF666831 RTCNT1_26_A11.g1_A029 Root control P... 167 8e-051
gb|CF477776.1|CF477776 RTWW3_9_B03.g1_A022 Well-watered lob... 167 8e-051
gb|DR091066.1|DR091066 RTAL1_19_E03.b1_A029 Roots plus adde... 167 3e-049
gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus adde... 152 3e-046
gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch... 152 3e-046
gb|BX680137.1|BX680137 BX680137 RS Pinus pinaster cDNA clon... 149 1e-045
gb|DR013664.1|DR013664 HEAT1_20_F02.g1_A029 Root at 37 C fo... 148 4e-045
gb|DR024643.1|DR024643 STRS1_66_A03.g1_A034 Shoot tip pitch... 166 8e-045
gb|DR081573.1|DR081573 RTFEPL1_30_D11.g1_A029 Roots plus ad... 167 1e-040
gb|DR691145.1|DR691145 EST1081231 Normalized pine embryo li... 151 3e-039
gb|DR690457.1|DR690457 EST1080543 Normalized pine embryo li... 110 5e-039
gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response R... 124 4e-038
gb|DT634385.1|DT634385 EST1149316 Normalized pine embryo li... 157 1e-037
gb|BX251956.1|BX251956 BX251956 Pinus pinaster differenciat... 127 1e-037
gb|CF671986.1|CF671986 RTCNT1_60_C07.g1_A029 Root control P... 156 2e-037
gb|DR014719.1|DR014719 HEAT1_51_E12.b1_A029 Root at 37 C fo... 156 2e-037
gb|DR687799.1|DR687799 EST1077881 Normalized pine embryo li... 156 2e-037
gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA... 156 2e-037
gb|CO169954.1|CO169954 NDL1_10_E11.g1_A029 Needles control ... 113 3e-036
gb|CF473575.1|CF473575 RTWW2_3_H10.g1_A021 Well-watered lob... 122 2e-035
gb|CO174896.1|CO174896 NDL1_47_A06.b1_A029 Needles control ... 70 3e-035
gb|DR094305.1|DR094305 STRR1_13_F01.g1_A033 Stem Response R... 119 3e-035
gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus cal... 113 8e-035
gb|DR091441.1|DR091441 RTAL1_21_D07.g1_A029 Roots plus adde... 113 7e-034
gb|DR080995.1|DR080995 RTFEPL1_26_D08.g1_A029 Roots plus ad... 139 3e-032
gb|CO164857.1|CO164857 FLD1_50_F04.g1_A029 Root flooded Pin... 104 5e-031
gb|BX249328.1|BX249328 BX249328 Pinus pinaster differenciat... 133 1e-030
dbj|BD224351.1| Materials and methods for the modification ... 100 1e-029
dbj|BD224414.1| Materials and methods for the modification ... 100 1e-029
gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine ro... 90 2e-027
gb|DR387499.1|DR387499 RTHG1_22_E08.b1_A029 Roots plus adde... 123 2e-027
gb|CX650887.1|CX650887 COLD1_48_F06.g1_A029 Root cold Pinus... 117 2e-027
gb|AW056671.1|AW056671 ST54D07 Pine TriplEx shoot tip libra... 86 1e-026
gb|DR178543.1|DR178543 RTMNUT1_12_A07.g1_A029 Roots minus m... 83 1e-024
gb|DR118138.1|DR118138 RTMG1_11_H09.b1_A029 Roots minus mag... 112 3e-024
gb|BE657071.1|BE657071 NXCI_042_A09_F NXCI (Nsf Xylem Compr... 108 6e-024
gb|CF478204.1|CF478204 RTWW3_19_D01.g1_A022 Well-watered lo... 108 6e-023
gb|DT636147.1|DT636147 EST1151078 Normalized pine embryo li... 106 3e-022
gb|CF671491.1|CF671491 RTCNT1_57_A06.g1_A029 Root control P... 104 1e-021
gb|CO362034.1|CO362034 NDL2_8_E08.g1_A029 Needles control 2... 66 6e-021
>gb|DR054674.1|DR054674 RTCA1_18_G02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G02_A029 5', mRNA sequence
Length = 784
Score = 169 bits (363), Expect(2) = 2e-051
Identities = 69/133 (51%), Positives = 86/133 (64%)
Frame = -3 / +1
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM D FSIS RI G +N +GV Y NNLI YLL++G T
Sbjct: 94 VDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGIT 273
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
PY NLYHYDLP ALE YGG L++++ + + +A+FCFKT+GDRVK+W FNEPR+VA L
Sbjct: 274 PYANLYHYDLPEALETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAAL 453
Query: 601 GYDTGSNPPQRCT 563
GYD G P RC+
Sbjct: 454 GYDNGIFAPGRCS 492
Score = 86.3 bits (182), Expect(2) = 3e-022
Identities = 53/108 (49%), Positives = 63/108 (58%)
Frame = +3 / -3
Query: 567 HL*GGFDPVS*PSSATILGSLNXNQCFTRSP*VLKQKSA*SVNKSAIFALNHPPYFFSSA 746
HL G P+S*P +AT GSLN Q FT SP VLKQ SA S ++PP SSA
Sbjct: 488 HLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNPP*AVSSA 309
Query: 747 RGRS*W*RLM*GVMPC*SR*XIKLLXYATPSGLTXXSPSXXILXXEIE 890
G+S* *R *GV+P SR* ++LL Y TP L +P IL +IE
Sbjct: 308 SGKS***RFA*GVIPLLSR*LMRLL*YWTPL*LIRPAPFGKILDQDIE 165
Score = 54.2 bits (112), Expect(2) = 2e-051
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / +1
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNSATEPYIVAHN LL+HATAV YR
Sbjct: 517 GNSATEPYIVAHNLLLSHATAVKIYR 594
Score = 39.6 bits (80), Expect(2) = 3e-022
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = +3 / -3
Query: 483 TAVACAKRKL*ATM*GSVAEFP 548
TAVAC KL ATM*GSVAEFP
Sbjct: 581 TAVACESSKLCATM*GSVAEFP 516
>gb|CF666831.1|CF666831 RTCNT1_26_A11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_A11_A029 5', mRNA sequence
Length = 860
Score = 167 bits (359), Expect(2) = 8e-051
Identities = 68/133 (51%), Positives = 85/133 (63%)
Frame = -3 / +1
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM D FSIS RI G +N +GV Y NNLI YLL++G T
Sbjct: 283 VDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGIT 462
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
PY NLYHYDLP LE YGG L++++ + + +A+FCFKT+GDRVK+W FNEPR+VA L
Sbjct: 463 PYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAAL 642
Query: 601 GYDTGSNPPQRCT 563
GYD G P RC+
Sbjct: 643 GYDNGIFAPGRCS 681
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 52/108 (48%), Positives = 62/108 (57%)
Frame = +3 / -1
Query: 567 HL*GGFDPVS*PSSATILGSLNXNQCFTRSP*VLKQKSA*SVNKSAIFALNHPPYFFSSA 746
HL G P+S*P +AT GSLN Q FT SP VLKQ SA S ++PP SS
Sbjct: 677 HLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNPP*AVSSP 498
Query: 747 RGRS*W*RLM*GVMPC*SR*XIKLLXYATPSGLTXXSPSXXILXXEIE 890
G+S* *R *GV+P SR* ++LL Y TP L +P IL +IE
Sbjct: 497 SGKS***RFA*GVIPLLSR*LMRLL*Y*TPL*LIRPAPFGKILDQDIE 354
Score = 54.2 bits (112), Expect(2) = 8e-051
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / +1
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNSATEPYIVAHN LL+HATAV YR
Sbjct: 706 GNSATEPYIVAHNLLLSHATAVKIYR 783
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = +3 / -1
Query: 483 TAVACAKRKL*ATM*GSVAEFP 548
TAVAC KL ATM*GSVAEFP
Sbjct: 770 TAVACESSKLCATM*GSVAEFP 705
>gb|CF477776.1|CF477776 RTWW3_9_B03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_B03_A022 5', mRNA sequence
Length = 735
Score = 167 bits (359), Expect(2) = 8e-051
Identities = 68/133 (51%), Positives = 85/133 (63%)
Frame = -3 / +2
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM D FSIS RI G +N +GV Y NNLI YLL++G T
Sbjct: 221 VDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGIT 400
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
PY NLYHYDLP LE YGG L++++ + + +A+FCFKT+GDRVK+W FNEPR+VA L
Sbjct: 401 PYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAAL 580
Query: 601 GYDTGSNPPQRCT 563
GYD G P RC+
Sbjct: 581 GYDNGIFAPGRCS 619
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 52/108 (48%), Positives = 62/108 (57%)
Frame = +3 / -1
Query: 567 HL*GGFDPVS*PSSATILGSLNXNQCFTRSP*VLKQKSA*SVNKSAIFALNHPPYFFSSA 746
HL G P+S*P +AT GSLN Q FT SP VLKQ SA S ++PP SS
Sbjct: 615 HLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNPP*AVSSP 436
Query: 747 RGRS*W*RLM*GVMPC*SR*XIKLLXYATPSGLTXXSPSXXILXXEIE 890
G+S* *R *GV+P SR* ++LL Y TP L +P IL +IE
Sbjct: 435 SGKS***RFA*GVIPLLSR*LMRLL*Y*TPL*LIRPAPFGKILDQDIE 292
Score = 54.2 bits (112), Expect(2) = 8e-051
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / +2
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNSATEPYIVAHN LL+HATAV YR
Sbjct: 644 GNSATEPYIVAHNLLLSHATAVKIYR 721
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = +3 / -1
Query: 483 TAVACAKRKL*ATM*GSVAEFP 548
TAVAC KL ATM*GSVAEFP
Sbjct: 708 TAVACESSKLCATM*GSVAEFP 643
>gb|DR091066.1|DR091066 RTAL1_19_E03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_E03_A029 3', mRNA sequence
Length = 774
Score = 167 bits (359), Expect(2) = 3e-049
Identities = 68/133 (51%), Positives = 85/133 (63%)
Frame = -3 / -2
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM D FSIS RI G +N +GV Y NNLI YLL++G T
Sbjct: 488 VDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGIT 309
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
PY NLYHYDLP LE YGG L++++ + + +A+FCFKT+GDRVK+W FNEPR+VA L
Sbjct: 308 PYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAAL 129
Query: 601 GYDTGSNPPQRCT 563
GYD G P RC+
Sbjct: 128 GYDNGIFAPGRCS 90
Score = 83.5 bits (176), Expect(2) = 2e-021
Identities = 52/108 (48%), Positives = 62/108 (57%)
Frame = +3 / +1
Query: 567 HL*GGFDPVS*PSSATILGSLNXNQCFTRSP*VLKQKSA*SVNKSAIFALNHPPYFFSSA 746
HL G P+S*P +AT GSLN Q FT SP VLKQ SA S ++PP SS
Sbjct: 94 HLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNPP*AVSSP 273
Query: 747 RGRS*W*RLM*GVMPC*SR*XIKLLXYATPSGLTXXSPSXXILXXEIE 890
G+S* *R *GV+P SR* ++LL Y TP L +P IL +IE
Sbjct: 274 SGKS***RFA*GVIPLLSR*LMRLL*Y*TPL*LIRPAPFGKILDQDIE 417
Score = 48.7 bits (100), Expect(2) = 3e-049
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -3 / -2
Query: 547 GNSATEPYIVAHNFLLAHATA 485
GNSATEPYIVAHN LL+HATA
Sbjct: 65 GNSATEPYIVAHNLLLSHATA 3
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = +3 / +1
Query: 483 TAVACAKRKL*ATM*GSVAEFP 548
TAVAC KL ATM*GSVAEFP
Sbjct: 1 TAVACESSKLCATM*GSVAEFP 66
>gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_A01_A029 5', mRNA sequence
Length = 788
Score = 152 bits (326), Expect(2) = 3e-046
Identities = 57/99 (57%), Positives = 73/99 (73%)
Frame = -3 / +2
Query: 859 GEXXVNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYA 680
G +N +GV Y NNLI YLL++G TPY NLYHYDLP LE YGG L++++ + + +A
Sbjct: 23 GAGRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFA 202
Query: 679 DFCFKTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
+FCFKT+GDRVK+W FNEPR+VA LGYD G P RC+
Sbjct: 203 EFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 319
Score = 54.2 bits (112), Expect(2) = 3e-046
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / +2
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNSATEPYIVAHN LL+HATAV YR
Sbjct: 344 GNSATEPYIVAHNLLLSHATAVKIYR 421
>gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 5', mRNA sequence
Length = 739
Score = 152 bits (326), Expect(2) = 3e-046
Identities = 57/99 (57%), Positives = 73/99 (73%)
Frame = -3 / +1
Query: 859 GEXXVNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYA 680
G +N +GV Y NNLI YLL++G TPY NLYHYDLP LE YGG L++++ + + +A
Sbjct: 10 GAGRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFA 189
Query: 679 DFCFKTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
+FCFKT+GDRVK+W FNEPR+VA LGYD G P RC+
Sbjct: 190 EFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 306
Score = 54.2 bits (112), Expect(2) = 3e-046
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / +1
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNSATEPYIVAHN LL+HATAV YR
Sbjct: 331 GNSATEPYIVAHNLLLSHATAVKIYR 408
>gb|BX680137.1|BX680137 BX680137 RS Pinus pinaster cDNA clone RS39F11, mRNA sequence
Length = 388
Score = 149 bits (321), Expect(2) = 1e-045
Identities = 56/92 (60%), Positives = 71/92 (77%)
Frame = -3 / +1
Query: 838 EGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTY 659
+GV Y NNLI YLL++G TPY NLYHYDLP ALE YGG L++++ + + +A+FCFKT+
Sbjct: 4 KGVQYYNNLINYLLKRGITPYANLYHYDLPEALETAYGGLLNSRVVEDYAKFAEFCFKTF 183
Query: 658 GDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
GDRVK+W FNEPR+VA LGYD G P RC+
Sbjct: 184 GDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 279
Score = 54.2 bits (112), Expect(2) = 1e-045
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / +1
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNSATEPYIVAHN LL+HATAV YR
Sbjct: 304 GNSATEPYIVAHNLLLSHATAVKIYR 381
>gb|DR013664.1|DR013664 HEAT1_20_F02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_F02_A029 5', mRNA sequence
Length = 726
Score = 148 bits (317), Expect(2) = 4e-045
Identities = 55/92 (59%), Positives = 70/92 (76%)
Frame = -3 / +2
Query: 838 EGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTY 659
+GV Y NNLI YLL++G TPY NLYHYDLP LE YGG L++++ + + +A+FCFKT+
Sbjct: 14 KGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTF 193
Query: 658 GDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
GDRVK+W FNEPR+VA LGYD G P RC+
Sbjct: 194 GDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 289
Score = 54.2 bits (112), Expect(2) = 4e-045
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / +2
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNSATEPYIVAHN LL+HATAV YR
Sbjct: 314 GNSATEPYIVAHNLLLSHATAVKIYR 391
>gb|DR024643.1|DR024643 STRS1_66_A03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_A03_A034 5', mRNA sequence
Length = 448
Score = 166 bits (357), Expect(2) = 8e-045
Identities = 66/122 (54%), Positives = 83/122 (68%)
Frame = -3 / +3
Query: 928 DLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLP 749
+LM D FSIS RI G +N +GV Y NNLI YLL++G TPY NLYHYDLP
Sbjct: 9 ELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGITPYANLYHYDLP 188
Query: 748 LALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQR 569
LE YGG L++++ + + +A+FCFKT+GDRVK+W FNEPR+VA LGYD G P R
Sbjct: 189 EGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGR 368
Query: 568 CT 563
C+
Sbjct: 369 CS 374
Score = 35.0 bits (70), Expect(2) = 8e-045
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -3 / +3
Query: 547 GNSATEPYIVAHNFLL 500
GNSATEPYIVAH LL
Sbjct: 399 GNSATEPYIVAHYLLL 446
>gb|DR081573.1|DR081573 RTFEPL1_30_D11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_30_D11_A029 5', mRNA sequence
Length = 678
Score = 167 bits (359), Expect = 1e-040
Identities = 68/133 (51%), Positives = 85/133 (63%)
Frame = -3 / +3
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM D FSIS RI G +N +GV Y NNLI YLL++G T
Sbjct: 261 VDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGIT 440
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
PY NLYHYDLP LE YGG L++++ + + +A+FCFKT+GDRVK+W FNEPR+VA L
Sbjct: 441 PYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAAL 620
Query: 601 GYDTGSNPPQRCT 563
GYD G P RC+
Sbjct: 621 GYDNGIFAPGRCS 659
>gb|DR691145.1|DR691145 EST1081231 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD479 3' end, mRNA sequence
Length = 748
Score = 151 bits (325), Expect(2) = 3e-039
Identities = 61/132 (46%), Positives = 77/132 (58%)
Frame = -3 / +2
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM S D FSIS RI +G +N G+ Y NNLI LLQ G
Sbjct: 266 VDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQ 445
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
P++ L+H+DLP ALE YGGWLS ++ + F YA+ CF+ +GDRVK+W NEP + L
Sbjct: 446 PFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPL 625
Query: 601 GYDTGSNPPQRC 566
GY G PP RC
Sbjct: 626 GYTVGIFPPTRC 661
Score = 30.9 bits (61), Expect(2) = 3e-039
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3 / +2
Query: 559 CAAGGNSATEPYIVAHNFLLA 497
C G S+ EPY+ AH+ LLA
Sbjct: 686 CITGNCSSAEPYLAAHHVLLA 748
>gb|DR690457.1|DR690457 EST1080543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACV28 3' end, mRNA sequence
Length = 915
Score = 110 bits (234), Expect(3) = 5e-039
Identities = 47/100 (47%), Positives = 59/100 (59%)
Frame = -3 / +3
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD LM D FSIS RI G +N +GV Y NNLI YLL++G T
Sbjct: 432 VDEYHLYKSDVQLMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGIT 611
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKT 662
PY NLYHYDLP LE YGG L++++ + + +A+FCFKT
Sbjct: 612 PYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKT 731
Score = 46.9 bits (96), Expect(3) = 5e-039
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 547 GNSATEPYIVAHNFLLAHAT 488
GNSATEPYIVAHN LL+HAT
Sbjct: 854 GNSATEPYIVAHNLLLSHAT 913
Score = 43.2 bits (88), Expect(3) = 5e-039
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -3 / +2
Query: 667 KTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
+ +GDR FNEPR+VA LGYD G P C+
Sbjct: 725 QNFGDR*NTGMTFNEPRVVAALGYDNGIFAPGMCS 829
>gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 3', mRNA sequence
Length = 910
Score = 124 bits (266), Expect(2) = 4e-038
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = -3 / -2
Query: 793 QGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRI 614
+G TPY NLYHYDLP LE YGG L++++ + + +A+FCFKT+GDRVK+W FNEPR+
Sbjct: 909 RGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRV 730
Query: 613 VALLGYDTGSNPPQRCT 563
VA LGYD G P RC+
Sbjct: 729 VAALGYDNGIFAPGRCS 679
Score = 54.2 bits (112), Expect(2) = 4e-038
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / -2
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNSATEPYIVAHN LL+HATAV YR
Sbjct: 654 GNSATEPYIVAHNLLLSHATAVKIYR 577
>gb|DT634385.1|DT634385 EST1149316 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG541 3' end, mRNA sequence
Length = 820
Score = 157 bits (338), Expect = 1e-037
Identities = 70/174 (40%), Positives = 89/174 (51%)
Frame = -3 / +3
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM S D FSIS RI +G +N G+ Y NNLI LLQ G
Sbjct: 282 VDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQ 461
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
P++ L+H+DLP ALE YGGWLS ++ + F YA+ CF+ +GDRVK+W NEP + L
Sbjct: 462 PFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPL 641
Query: 601 GYDTGSNPPQRCTRCAAGGNSATEPYIVAHNFLLAHATAVARYRTIATIRRQSR 440
GY G PP RC A T A +L AH +A + R R
Sbjct: 642 GYTVGIFPPTRCAAPHANPLCITGNCSSAEPYLAAHHVLLAHASAVEKYRENIR 803
>gb|BX251956.1|BX251956 BX251956 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP057G03, mRNA sequence
Length = 673
Score = 127 bits (271), Expect(2) = 1e-037
Identities = 48/95 (50%), Positives = 65/95 (68%)
Frame = -3 / +3
Query: 847 VNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCF 668
VN EG+AY NNLI LL+ G P++ LYH+DLP ALE +YGG+ S K+ D F +++ CF
Sbjct: 297 VNKEGIAYYNNLINELLKNGVEPFVTLYHWDLPQALEDEYGGFRSKKVVDDFGIFSEECF 476
Query: 667 KTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
+ +GDRVK+W NEP I + YD G + P RC+
Sbjct: 477 RAFGDRVKYWVTVNEPLIFSYFSYDVGLHAPGRCS 581
Score = 50.6 bits (104), Expect(2) = 1e-037
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3 / +2
Query: 547 GNSATEPYIVAHNFLLAHATAV 482
GNSATEPYIVAHN LLAH+TAV
Sbjct: 605 GNSATEPYIVAHNMLLAHSTAV 670
>gb|CF671986.1|CF671986 RTCNT1_60_C07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_C07_A029 5', mRNA sequence
Length = 792
Score = 156 bits (336), Expect = 2e-037
Identities = 69/172 (40%), Positives = 89/172 (51%)
Frame = -3 / +3
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM S D FSIS RI +G +N G+ Y NNLI LLQ G
Sbjct: 126 VDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQ 305
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
P++ L+H+DLP ALE YGGWLS ++ + F YA+ CF+ +GDRVK+W NEP + L
Sbjct: 306 PFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPL 485
Query: 601 GYDTGSNPPQRCTRCAAGGNSATEPYIVAHNFLLAHATAVARYRTIATIRRQ 446
GY G PP RC A T A +L AH +A + R +
Sbjct: 486 GYTVGIFPPTRCAAPHANPLCITGNCSSAEPYLAAHHVLLAHASAVEKYREK 641
>gb|DR014719.1|DR014719 HEAT1_51_E12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E12_A029 3', mRNA sequence
Length = 838
Score = 156 bits (336), Expect = 2e-037
Identities = 69/172 (40%), Positives = 89/172 (51%)
Frame = -3 / -3
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM S D FSIS RI +G +N G+ Y NNLI LLQ G
Sbjct: 578 VDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQ 399
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
P++ L+H+DLP ALE YGGWLS ++ + F YA+ CF+ +GDRVK+W NEP + L
Sbjct: 398 PFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPL 219
Query: 601 GYDTGSNPPQRCTRCAAGGNSATEPYIVAHNFLLAHATAVARYRTIATIRRQ 446
GY G PP RC A T A +L AH +A + R +
Sbjct: 218 GYTVGIFPPTRCAAPHANPLCITGNCSSAEPYLAAHHVLLAHASAVEKYREK 63
>gb|DR687799.1|DR687799 EST1077881 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABW68 3' end, mRNA sequence
Length = 801
Score = 156 bits (336), Expect = 2e-037
Identities = 69/172 (40%), Positives = 89/172 (51%)
Frame = -3 / +1
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM S D FSIS RI +G +N G+ Y NNLI LLQ G
Sbjct: 274 VDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQ 453
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
P++ L+H+DLP ALE YGGWLS ++ + F YA+ CF+ +GDRVK+W NEP + L
Sbjct: 454 PFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPL 633
Query: 601 GYDTGSNPPQRCTRCAAGGNSATEPYIVAHNFLLAHATAVARYRTIATIRRQ 446
GY G PP RC A T A +L AH +A + R +
Sbjct: 634 GYTVGIFPPTRCAAPHANPLCITGNCSSAEPYLAAHHVLLAHASAVEKYREK 789
>gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA, complete cds
Length = 1909
Score = 156 bits (336), Expect = 2e-037
Identities = 69/172 (40%), Positives = 89/172 (51%)
Frame = -3 / +3
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM S D FSIS RI +G +N G+ Y NNLI LLQ G
Sbjct: 417 VDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQ 596
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
P++ L+H+DLP ALE YGGWLS ++ + F YA+ CF+ +GDRVK+W NEP + L
Sbjct: 597 PFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPL 776
Query: 601 GYDTGSNPPQRCTRCAAGGNSATEPYIVAHNFLLAHATAVARYRTIATIRRQ 446
GY G PP RC A T A +L AH +A + R +
Sbjct: 777 GYTVGIFPPTRCAAPHANPLCMTGNCSSAEPYLAAHHVLLAHASAVEKYREK 932
>gb|CO169954.1|CO169954 NDL1_10_E11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_E11_A029 5', mRNA sequence
Length = 683
Score = 113 bits (242), Expect(3) = 3e-036
Identities = 41/85 (48%), Positives = 58/85 (68%)
Frame = -3 / +3
Query: 817 NLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHW 638
NLI L+ G PY+ LYH+DLP +L+ +YGGWLS ++ D FT +A+ CF +GDRV++W
Sbjct: 324 NLINELVYHGIEPYVTLYHFDLPQSLQDEYGGWLSRQIVDDFTVFANVCFVEFGDRVRNW 503
Query: 637 XXFNEPRIVALLGYDTGSNPPQRCT 563
FNEP ++ GY + PQRC+
Sbjct: 504 MTFNEPNFFSMSGYGSDIFAPQRCS 578
Score = 46.4 bits (95), Expect(3) = 3e-036
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -3 / +3
Query: 553 AGGNSATEPYIVAHNFLLAHATAVARYR 470
+ GNS+ EPYIV HN LLAHA V YR
Sbjct: 597 SAGNSSVEPYIVGHNVLLAHAAVVELYR 680
Score = 30.9 bits (61), Expect(3) = 3e-036
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3 / +3
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEG 833
VD +LM D SIS R+ DG+ +NP+G
Sbjct: 177 VDQYHRYKEDVELMHQLGIDAYRLSISWSRLLPDGKGTINPKG 305
>gb|CF473575.1|CF473575 RTWW2_3_H10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_H10_A021 5', mRNA sequence
Length = 728
Score = 122 bits (262), Expect(2) = 2e-035
Identities = 48/95 (50%), Positives = 61/95 (64%)
Frame = -3 / +1
Query: 847 VNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCF 668
VN EG+AY NNLI LLQ+G P + LYH+DLP L + GGWL+ ++ + F YA+ CF
Sbjct: 343 VNKEGIAYYNNLIDTLLQKGVRPSVTLYHWDLPQKLHESMGGWLNREIVNYFALYAETCF 522
Query: 667 KTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
+GDRVK W NEP A+ GY TG P RC+
Sbjct: 523 SAFGDRVKQWITLNEPLQTAVNGYATGIFAPGRCS 627
Score = 46.9 bits (96), Expect(2) = 2e-035
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = -3 / +1
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
G+S+TEPY+VAHN LLAHA AV YR
Sbjct: 649 GDSSTEPYLVAHNQLLAHAAAVDIYR 726
>gb|CO174896.1|CO174896 NDL1_47_A06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_47_A06_A029 3', mRNA sequence
Length = 596
Score = 70.3 bits (147), Expect(3) = 3e-035
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = -3 / -1
Query: 694 FTDYADFCFKTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
F YA+ CF+ +GDRVKHW FNEPR +++ GYD G P RC+
Sbjct: 407 FARYAEACFQAFGDRVKHWITFNEPRGISIHGYDIGIQAPGRCS 276
Score = 67.0 bits (140), Expect(3) = 3e-035
Identities = 28/59 (47%), Positives = 35/59 (59%)
Frame = -3 / -2
Query: 904 DXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKY 728
D FSIS R+ +G +N G+ Y N LI LL +G PY+ LYH+DLP ALE Y
Sbjct: 595 DTYRFSISWSRLFLNGNQDINKAGLDYYNALIDTLLAKGIDPYVTLYHWDLPQALEDAY 419
Score = 50.1 bits (103), Expect(3) = 3e-035
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = -3 / -1
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNS+TEPYIVAHN LL+HA AV YR
Sbjct: 248 GNSSTEPYIVAHNLLLSHAAAVDIYR 171
>gb|DR094305.1|DR094305 STRR1_13_F01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_F01_A033 5', mRNA sequence
Length = 850
Score = 119 bits (254), Expect(2) = 3e-035
Identities = 43/95 (45%), Positives = 65/95 (68%)
Frame = -3 / +3
Query: 847 VNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCF 668
VN G+ Y NN I LL+ G P++ L+H+D+P ALE +YGG+ S ++ + F+ +A+ CF
Sbjct: 42 VNKVGIVYYNNFINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFAEECF 221
Query: 667 KTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
+ +GDRVK+W NEP + +L GYD G + P RC+
Sbjct: 222 RAFGDRVKYWVTVNEPLVFSLGGYDLGIHAPGRCS 326
Score = 50.1 bits (103), Expect(2) = 3e-035
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = -3 / +3
Query: 547 GNSATEPYIVAHNFLLAHATAVARYRT 467
GNSATEPYIV HN LLAH V YRT
Sbjct: 351 GNSATEPYIVTHNMLLAHRAVVKLYRT 431
>gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_C02_A029 3', mRNA sequence
Length = 696
Score = 113 bits (242), Expect(2) = 8e-035
Identities = 41/70 (58%), Positives = 53/70 (75%)
Frame = -3 / -3
Query: 772 NLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALLGYD 593
NLYHYDLP LE YGG L++++ + + +A+FCFKT+GDRVK+W FNEPR+VA LGYD
Sbjct: 676 NLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYD 497
Query: 592 TGSNPPQRCT 563
G P RC+
Sbjct: 496 NGIFAPGRCS 467
Score = 54.2 bits (112), Expect(2) = 8e-035
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / -3
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNSATEPYIVAHN LL+HATAV YR
Sbjct: 442 GNSATEPYIVAHNLLLSHATAVKIYR 365
>gb|DR091441.1|DR091441 RTAL1_21_D07.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_21_D07_A029 5', mRNA sequence
Length = 831
Score = 113 bits (242), Expect(2) = 7e-034
Identities = 40/91 (43%), Positives = 63/91 (69%)
Frame = -3 / +2
Query: 835 GVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYG 656
G+ Y NNLI LL+ G P++ L+H+D+P ALE +YGG+ S ++ + F+ +A+ CF+ +G
Sbjct: 11 GIVYYNNLINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFAEECFRAFG 190
Query: 655 DRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
DRVK+W NEP + ++ GYD + P RC+
Sbjct: 191 DRVKYWVTVNEPLVFSVGGYDLAIHAPGRCS 283
Score = 51.0 bits (105), Expect(2) = 7e-034
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = -3 / +2
Query: 547 GNSATEPYIVAHNFLLAHATAVARYRT 467
GNSATEPYIV HN LLAH+ V YRT
Sbjct: 308 GNSATEPYIVTHNMLLAHSAVVKLYRT 388
>gb|DR080995.1|DR080995 RTFEPL1_26_D08.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_D08_A029 5', mRNA sequence
Length = 691
Score = 139 bits (298), Expect = 3e-032
Identities = 56/122 (45%), Positives = 72/122 (59%)
Frame = -3 / +2
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM S D FSIS RI +G +N G+ Y NNLI LLQ G
Sbjct: 326 VDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQ 505
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALL 602
P++ L+H+DLP ALE YGGWLS ++ + F YA+ CF+ +GDRVK+W NEP + L
Sbjct: 506 PFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPL 685
Query: 601 GY 596
GY
Sbjct: 686 GY 691
>gb|CO164857.1|CO164857 FLD1_50_F04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 5', mRNA sequence
Length = 873
Score = 104 bits (221), Expect(2) = 5e-031
Identities = 37/72 (51%), Positives = 50/72 (69%)
Frame = -3 / +1
Query: 790 GXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIV 611
G PY+ LYH+DLP ALE Y GWLS+K+ + + +A+ CF+ +GDRVK+W FNEP
Sbjct: 85 GIEPYVTLYHWDLPQALEDAYKGWLSSKIIEDYAKFAETCFEKFGDRVKNWMTFNEPHTF 264
Query: 610 ALLGYDTGSNPP 575
A+ GYD G + P
Sbjct: 265 AIQGYDIGLSAP 300
Score = 51.0 bits (105), Expect(2) = 5e-031
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -3 / +1
Query: 547 GNSATEPYIVAHNFLLAHATAVARYRT 467
GNSATEPYIVAHN LL+HA V YRT
Sbjct: 343 GNSATEPYIVAHNVLLSHAKTVDIYRT 423
>gb|BX249328.1|BX249328 BX249328 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP022G02, mRNA sequence
Length = 671
Score = 133 bits (286), Expect = 1e-030
Identities = 55/117 (47%), Positives = 71/117 (60%)
Frame = -3 / +1
Query: 925 LMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPL 746
L+K D FSIS R+ G+ +N EGVAY NNLI LL+ G + L+H+D P
Sbjct: 292 LIKDMGVDVYRFSISWSRMFSKGKGEINEEGVAYYNNLINELLENGIQVSVTLFHWDAPQ 471
Query: 745 ALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALLGYDTGSNPP 575
LE +YGG+LS M +T YA+ CF+ +GDRVK W FNEP +V GYD G + P
Sbjct: 472 CLEDEYGGFLSPCMVTDYTAYAETCFRLFGDRVKQWITFNEPYLVCYFGYDRGLHAP 642
>dbj|BD224351.1| Materials and methods for the modification of plant lignin content
Length = 463
Score = 100 bits (212), Expect(2) = 1e-029
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = -3 / +2
Query: 790 GXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIV 611
G P++ LYH+DLP ALE +YGG+ S K+ D F +++ CF+ +GDRVK+W NEP I
Sbjct: 119 GVEPFVTLYHWDLPQALEDEYGGFRSKKVVDDFGIFSEECFRAFGDRVKYWVTVNEPLIF 298
Query: 610 ALLGYDTGSNPPQRCT 563
+ YD G + P RC+
Sbjct: 299 SYFSYDVGLHAPGRCS 346
Score = 50.6 bits (104), Expect(2) = 1e-029
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3 / +2
Query: 547 GNSATEPYIVAHNFLLAHATAV 482
GNSATEPYIVAHN LLAH+TAV
Sbjct: 371 GNSATEPYIVAHNMLLAHSTAV 436
>dbj|BD224414.1| Materials and methods for the modification of plant lignin content
Length = 424
Score = 100 bits (212), Expect(2) = 1e-029
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = -3 / +2
Query: 790 GXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIV 611
G P++ LYH+DLP ALE +YGG+ S K+ D F +++ CF+ +GDRVK+W NEP I
Sbjct: 80 GVEPFVTLYHWDLPQALEDEYGGFRSKKVVDDFGIFSEECFRAFGDRVKYWVTVNEPLIF 259
Query: 610 ALLGYDTGSNPPQRCT 563
+ YD G + P RC+
Sbjct: 260 SYFSYDVGLHAPGRCS 307
Score = 50.6 bits (104), Expect(2) = 1e-029
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3 / +2
Query: 547 GNSATEPYIVAHNFLLAHATAV 482
GNSATEPYIVAHN LLAH+TAV
Sbjct: 332 GNSATEPYIVAHNMLLAHSTAV 397
>gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_H05_A022 5', mRNA
sequence
Length = 685
Score = 90.4 bits (191), Expect(2) = 2e-027
Identities = 32/68 (47%), Positives = 47/68 (69%)
Frame = -3 / +3
Query: 766 YHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALLGYDTG 587
YH+D+P ALE +YGG+ S ++ + F +A+ CF+ +GDRVK+W NEP +L GYD G
Sbjct: 3 YHWDMPQALEDEYGGFRSKRVVEDFGVFAEECFRAFGDRVKYWTTINEPLTFSLYGYDLG 182
Query: 586 SNPPQRCT 563
+ P RC+
Sbjct: 183 LHAPGRCS 206
Score = 52.8 bits (109), Expect(2) = 2e-027
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -3 / +3
Query: 547 GNSATEPYIVAHNFLLAHATAVARYRT 467
GNSATEPYIV HN LLAH+ AV YRT
Sbjct: 231 GNSATEPYIVTHNMLLAHSAAVKLYRT 311
>gb|DR387499.1|DR387499 RTHG1_22_E08.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_22_E08_A029 3', mRNA sequence
Length = 657
Score = 123 bits (263), Expect = 2e-027
Identities = 48/95 (50%), Positives = 61/95 (64%)
Frame = -3 / -3
Query: 847 VNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCF 668
VN EG+AY NNLI LLQ+G P + LYH+DLP L + GGWL+ ++ + F YA+ CF
Sbjct: 295 VNKEGIAYYNNLIDTLLQKGVRPSVTLYHWDLPQKLHESMGGWLNREIVNYFALYAETCF 116
Query: 667 KTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
+GDRVK W NEP A+ GY TG P RC+
Sbjct: 115 SAFGDRVKQWITLNEPLQTAINGYATGIFAPGRCS 11
>gb|CX650887.1|CX650887 COLD1_48_F06.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_F06_A029 5', mRNA sequence
Length = 778
Score = 117 bits (251), Expect(2) = 2e-027
Identities = 42/95 (44%), Positives = 65/95 (68%)
Frame = -3 / +2
Query: 847 VNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCF 668
VN G+ Y NN I LL+ G P++ L+H+D+P ALE +YGG+ S ++ + F+ +A+ CF
Sbjct: 443 VNKVGIVYYNNFINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFAEECF 622
Query: 667 KTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
+ +GDRVK+W NEP + ++ GYD G + P RC+
Sbjct: 623 RAFGDRVKYWVTVNEPLVFSVGGYDLGIHAPGRCS 727
Score = 24.9 bits (48), Expect(2) = 2e-027
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 547 GNSATEPYI 521
GNSATEPYI
Sbjct: 752 GNSATEPYI 778
>gb|AW056671.1|AW056671 ST54D07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST54D07, mRNA sequence
Length = 432
Score = 86.3 bits (182), Expect(2) = 1e-026
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = -3 / +1
Query: 727 GGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALLGYDTGSNPPQRCT 563
GG L++++ + + +A+FCFKT+GDRVK+W FNEPR+VA LGYD G P RC+
Sbjct: 1 GGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 165
Score = 54.2 bits (112), Expect(2) = 1e-026
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -3 / +1
Query: 547 GNSATEPYIVAHNFLLAHATAVARYR 470
GNSATEPYIVAHN LL+HATAV YR
Sbjct: 190 GNSATEPYIVAHNLLLSHATAVKIYR 267
>gb|DR178543.1|DR178543 RTMNUT1_12_A07.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_12_A07_A029 5', mRNA sequence
Length = 701
Score = 83.1 bits (175), Expect(2) = 1e-024
Identities = 29/66 (43%), Positives = 47/66 (71%)
Frame = -3 / +1
Query: 760 YDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRIVALLGYDTGSN 581
+D+P ALE +YGG+ S ++ + F+ +A+ CF+ +GDRVK+W NEP + ++ GYD G +
Sbjct: 1 WDMPQALEDEYGGFRSKRVVEDFSIFAEECFRAFGDRVKYWVTVNEPLVFSVGGYDLGIH 180
Query: 580 PPQRCT 563
P RC+
Sbjct: 181 APGRCS 198
Score = 51.0 bits (105), Expect(2) = 1e-024
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = -3 / +1
Query: 547 GNSATEPYIVAHNFLLAHATAVARYRT 467
GNSATEPYIV HN LLAH+ V YRT
Sbjct: 223 GNSATEPYIVTHNMLLAHSAVVKLYRT 303
>gb|DR118138.1|DR118138 RTMG1_11_H09.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_11_H09_A029 3', mRNA sequence
Length = 656
Score = 112 bits (240), Expect = 3e-024
Identities = 44/86 (51%), Positives = 56/86 (65%)
Frame = -3 / -1
Query: 847 VNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCF 668
VN EG+AY NNLI LLQ+G P + LYH+DLP L + GGWL+ ++ + F YA+ CF
Sbjct: 260 VNKEGIAYYNNLIDTLLQKGVRPSVTLYHWDLPQKLHELMGGWLNREIVNYFALYAETCF 81
Query: 667 KTYGDRVKHWXXFNEPRIVALLGYDT 590
+GDRVK W NEP A+ GY T
Sbjct: 80 SAFGDRVKQWITLNEPLQTAVNGYAT 3
>gb|BE657071.1|BE657071 NXCI_042_A09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_042_A09 5' similar to Arabidopsis
thaliana sequence At4g21760 beta-glucosidase -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 300
Score = 108 bits (231), Expect(2) = 6e-024
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = -3 / +2
Query: 793 QGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCFKTYGDRVKHWXXFNEPRI 614
+G P++ L HYD+P ALE YGGWLS + D +T YA CFK +G RVK+W FNEP I
Sbjct: 2 RGIQPFVTLCHYDIPQALEDLYGGWLSPNIIDDYTLYAXACFKNFGGRVKYWSTFNEPNI 181
Query: 613 VALLGYDTGSNPPQRCT 563
YD G PP RC+
Sbjct: 182 FVPXXYDAGKYPPARCS 232
Score = 22.6 bits (43), Expect(2) = 6e-024
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3 / +2
Query: 547 GNSATEPYIVAHN 509
GNS+ YI AHN
Sbjct: 257 GNSSXXXYIAAHN 295
>gb|CF478204.1|CF478204 RTWW3_19_D01.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_D01_A022 5', mRNA sequence
Length = 620
Score = 108 bits (231), Expect = 6e-023
Identities = 39/85 (45%), Positives = 59/85 (69%)
Frame = -3 / +1
Query: 847 VNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCF 668
VN G+ Y NN I LL+ G P++ L+H+D+P ALE +YGG+ S ++ + F+ +A+ CF
Sbjct: 364 VNKVGIVYYNNFINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFAEECF 543
Query: 667 KTYGDRVKHWXXFNEPRIVALLGYD 593
+ +GDRVK+W NEP + +L GYD
Sbjct: 544 RAFGDRVKYWVTVNEPLVFSLGGYD 618
>gb|DT636147.1|DT636147 EST1151078 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGO51 3' end, mRNA sequence
Length = 735
Score = 106 bits (226), Expect = 3e-022
Identities = 45/98 (45%), Positives = 58/98 (59%)
Frame = -3 / +2
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM D FSIS RI G +N +GV Y NNLI YLL++G T
Sbjct: 440 VDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGIT 619
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCF 668
PY NLYHYDLP LE YGG L++++ + + +A+FCF
Sbjct: 620 PYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCF 733
>gb|CF671491.1|CF671491 RTCNT1_57_A06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_A06_A029 5', mRNA sequence
Length = 689
Score = 104 bits (222), Expect = 1e-021
Identities = 44/98 (44%), Positives = 56/98 (57%)
Frame = -3 / +3
Query: 961 VDXXXXXXXXXDLMKSXXXDXXXFSISXXRIXXDGEXXVNPEGVAYXNNLIXYLLQQGXT 782
VD +LM S D FSIS RI +G +N G+ Y NNLI LLQ G
Sbjct: 396 VDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQ 575
Query: 781 PYINLYHYDLPLALEKKYGGWLSAKMADLFTDYADFCF 668
P++ L+H+DLP ALE YGGWLS ++ + F YA+ CF
Sbjct: 576 PFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICF 689
>gb|CO362034.1|CO362034 NDL2_8_E08.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 5', mRNA sequence
Length = 729
Score = 66.1 bits (138), Expect(3) = 6e-021
Identities = 27/48 (56%), Positives = 34/48 (70%)
Frame = -3 / +2
Query: 847 VNPEGVAYXNNLIXYLLQQGXTPYINLYHYDLPLALEKKYGGWLSAKM 704
VN EG+AY NNLI LL P+I L+H+DLP ALE +Y G+LS K+
Sbjct: 146 VNQEGIAYYNNLINELLNNDIEPFITLFHWDLPQALEDEYMGFLSQKV 289
Score = 48.7 bits (100), Expect(3) = 6e-021
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -3 / +1
Query: 547 GNSATEPYIVAHNFLLAHATAVARYRT 467
G+SATEPYIV HN LLAH+ AV Y+T
Sbjct: 373 GDSATEPYIVGHNMLLAHSAAVKIYKT 453
Score = 24.0 bits (46), Expect(3) = 6e-021
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -3 / +1
Query: 601 GYDTGSNPPQRCT 563
GYD G++ P RC+
Sbjct: 310 GYDVGADAPGRCS 348
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 443,610,049
Number of Sequences: 355925
Number of extensions: 6003893
Number of successful extensions: 38966
Number of sequences better than 1.0e-020: 44
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 15211528480
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)