TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO368510.1|CO368510 RTK1_41_C06.b1_A029 Roots minus pota... 119 2e-026
gb|CF402055.1|CF402055 RTWW1_16_A10.g1_A015 Well-watered lo... 117 7e-026
gb|CF672703.1|CF672703 RTCNT1_73_H09.b1_A029 Root control P... 117 7e-026
gb|AW437952.1|AW437952 ST78G04 Pine TriplEx shoot tip libra... 114 6e-025
gb|CF388364.1|CF388364 RTDR2_2_B10.g1_A021 Loblolly pine ro... 114 6e-025
gb|DR015097.1|DR015097 STRS1_1_B05.g1_A034 Shoot tip pitch ... 114 6e-025
gb|DR687398.1|DR687398 EST1077480 Normalized pine embryo li... 109 2e-023
gb|DR687613.1|DR687613 EST1077695 Normalized pine embryo li... 109 2e-023
gb|DT633915.1|DT633915 EST1148846 Normalized pine embryo li... 109 2e-023
gb|DT634194.1|DT634194 EST1149125 Normalized pine embryo li... 109 2e-023
gb|DT634300.1|DT634300 EST1149231 Normalized pine embryo li... 109 2e-023
gb|CX715022.1|CX715022 RTPQ1_30_A01.b1_A032 Roots treated w... 108 3e-023
>gb|CO368510.1|CO368510 RTK1_41_C06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C06_A029 3', mRNA sequence
Length = 865
Score = 119 bits (254), Expect = 2e-026
Identities = 45/56 (80%), Positives = 53/56 (94%)
Frame = +1 / -2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+V+STD KPRLKWTPELHERFV+AV QLGGPDKATPK+++R+MG+ GLTLYHLKSH
Sbjct: 696 VVVSTDPKPRLKWTPELHERFVDAVTQLGGPDKATPKSVLRVMGVKGLTLYHLKSH 529
>gb|CF402055.1|CF402055 RTWW1_16_A10.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_A10_A015 5', mRNA sequence
Length = 700
Score = 117 bits (250), Expect = 7e-026
Identities = 45/56 (80%), Positives = 53/56 (94%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELH+RFV+AV+QLGGPDKATPKTIM++MG+ GLTLYHLKSH
Sbjct: 180 LVLTTDPKPRLRWTVELHDRFVDAVNQLGGPDKATPKTIMKVMGVKGLTLYHLKSH 347
>gb|CF672703.1|CF672703 RTCNT1_73_H09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_73_H09_A029 3', mRNA sequence
Length = 612
Score = 117 bits (250), Expect = 7e-026
Identities = 45/56 (80%), Positives = 53/56 (94%)
Frame = +1 / -2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELH+RFV+AV+QLGGPDKATPKTIM++MG+ GLTLYHLKSH
Sbjct: 521 LVLTTDPKPRLRWTVELHDRFVDAVNQLGGPDKATPKTIMKVMGVKGLTLYHLKSH 354
>gb|AW437952.1|AW437952 ST78G04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST78G04, mRNA sequence
Length = 349
Score = 114 bits (243), Expect = 6e-025
Identities = 43/56 (76%), Positives = 51/56 (91%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+V+S D KPRL+WTPELHERFV+AV QLGGPDKATPK+++R MG+ GLTLYHLKSH
Sbjct: 82 VVVSADPKPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSH 249
>gb|CF388364.1|CF388364 RTDR2_2_B10.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_2_B10_A021 5', mRNA
sequence
Length = 732
Score = 114 bits (243), Expect = 6e-025
Identities = 43/56 (76%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+V+S D KPRL+WTPELHERFV+AV QLGGPDKATPK+++R MG+ GLTLYHLKSH
Sbjct: 191 VVVSADPKPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSH 358
>gb|DR015097.1|DR015097 STRS1_1_B05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_B05_A034 5', mRNA sequence
Length = 853
Score = 114 bits (243), Expect = 6e-025
Identities = 43/56 (76%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+V+S D KPRL+WTPELHERFV+AV QLGGPDKATPK+++R MG+ GLTLYHLKSH
Sbjct: 56 VVVSADPKPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSH 223
>gb|DR687398.1|DR687398 EST1077480 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABR96 3' end, mRNA sequence
Length = 694
Score = 109 bits (232), Expect = 2e-023
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTD KPRL+WT ELHERFV+AV +LGGPDKATPK + MG+ GLTLYHLKSH
Sbjct: 220 LVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSH 387
>gb|DR687613.1|DR687613 EST1077695 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABU53 3' end, mRNA sequence
Length = 739
Score = 109 bits (232), Expect = 2e-023
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTD KPRL+WT ELHERFV+AV +LGGPDKATPK + MG+ GLTLYHLKSH
Sbjct: 220 LVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSH 387
>gb|DT633915.1|DT633915 EST1148846 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG017 3' end, mRNA sequence
Length = 930
Score = 109 bits (232), Expect = 2e-023
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTD KPRL+WT ELHERFV+AV +LGGPDKATPK + MG+ GLTLYHLKSH
Sbjct: 228 LVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSH 395
>gb|DT634194.1|DT634194 EST1149125 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG331 3' end, mRNA sequence
Length = 921
Score = 109 bits (232), Expect = 2e-023
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTD KPRL+WT ELHERFV+AV +LGGPDKATPK + MG+ GLTLYHLKSH
Sbjct: 228 LVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSH 395
>gb|DT634300.1|DT634300 EST1149231 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG449 3' end, mRNA sequence
Length = 776
Score = 109 bits (232), Expect = 2e-023
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTD KPRL+WT ELHERFV+AV +LGGPDKATPK + MG+ GLTLYHLKSH
Sbjct: 228 LVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSH 395
>gb|CX715022.1|CX715022 RTPQ1_30_A01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_30_A01_A032 3', mRNA sequence
Length = 408
Score = 108 bits (231), Expect = 3e-023
Identities = 43/52 (82%), Positives = 47/52 (90%)
Frame = +1 / -1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYH 570
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYH
Sbjct: 156 LVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRAMGVKGLTLYH 1
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 312,448,725
Number of Sequences: 355925
Number of extensions: 4259658
Number of successful extensions: 43348
Number of sequences better than 1.0e-020: 13
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7706846940
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)