TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750753.2.1
(1126 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo lib... 293 9e-091
gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo li... 293 9e-091
gb|BX250119.1|BX250119 BX250119 Pinus pinaster differenciat... 248 3e-081
gb|CF386566.1|CF386566 RTDR1_15_D11.b1_A015 Loblolly pine r... 220 1e-056
gb|DR054271.1|DR054271 RTCA1_16_G04.b1_A029 Roots minus cal... 175 6e-043
gb|DR685262.1|DR685262 EST1075339 Normalized pine embryo li... 79 3e-031
gb|DT632793.1|DT632793 EST1147724 Normalized pine embryo li... 79 3e-031
gb|DR180737.1|DR180737 RTMNUT1_34_B08.g1_A029 Roots minus m... 101 9e-028
gb|BF516651.1|BF516651 NXSI_001_F05_F NXSI (Nsf Xylem Side ... 114 1e-024
>gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABL95, mRNA sequence
Length = 596
Score = 293 bits (634), Expect(3) = 9e-091
Identities = 119/135 (88%), Positives = 129/135 (95%)
Frame = +2 / -1
Query: 92 THGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWS 271
THGGFSVLRRHADECLPPLDM++QPP+Q+LVAKDLHGVEWRFRHIFRGQPRRHLL +GWS
Sbjct: 596 THGGFSVLRRHADECLPPLDMSQQPPSQDLVAKDLHGVEWRFRHIFRGQPRRHLLTTGWS 417
Query: 272 VFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATAWHAV 451
VFVS+KRL AGDAFIFLRG++GELRVGVRRAMRQQ NVPSSVISSHSMHLGV+ATA HAV
Sbjct: 416 VFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQNNVPSSVISSHSMHLGVIATASHAV 237
Query: 452 NTGTMFTVYYKPRTS 496
T TMF+VYYKPRTS
Sbjct: 236 TTKTMFSVYYKPRTS 192
Score = 169 bits (363), Expect(2) = 2e-046
Identities = 75/105 (71%), Positives = 84/105 (80%)
Frame = -2 / +1
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRK 316
LVLGL**T+NMV V+TAC AVA TPRCML LDIT+DGT C MARLTPTRSSP SPL+K
Sbjct: 193 LVLGL**TLNMVFVVTACDAVAMTPRCML*LDITDDGTLFCWRMARLTPTRSSPFSPLKK 372
Query: 315 MKASPAPRRLALTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSLAT 181
+ ASPA L LTKTLQP+ +CL G*P + R RHSTPC+SLAT
Sbjct: 373 INASPATSLLELTKTLQPVVSKCLLG*PRKICRNRHSTPCKSLAT 507
Score = 155 bits (332), Expect(2) = 2e-040
Identities = 64/133 (48%), Positives = 92/133 (69%)
Frame = -1 / +3
Query: 493 CPRLVVDSKHGPSVNSMPCCSKNTKMHAVA*YY*RWNICLLPHGTPDSYTKLPTITS*KD 314
CP ++D+KHG N M C +TKMHAV Y WNI LL HGTP+S+T+ T KD
Sbjct: 195 CPWFIIDTKHGLRCNCM*CSCNDTKMHAVTGYNR*WNIVLLAHGTPNSHTQFTIFTPQKD 374
Query: 313 EGISSTKTLGTNKNTPATLQKMPSWLTSEYVAKAPFHTMQVLGYKLLCWRLTGHIQWRKT 134
+ IS K+ NK+TPA+ ++MP WLT++ +++ PF++MQVLG+++L WRL HIQ KT
Sbjct: 375 KCISCHKSFRANKDTPASGKQMPPWLTAKDMSEPPFNSMQVLGHQILRWRLLTHIQRWKT 554
Query: 133 LICMAPQHRESTM 95
I M+P++R+ +M
Sbjct: 555 FISMSPENRKPSM 593
Score = 124 bits (266), Expect(2) = 4e-039
Identities = 56/133 (42%), Positives = 77/133 (57%)
Frame = +1 / -3
Query: 97 WWILGAAAPCR*VSSATGYDPSTSNTRACSQGPAWCGMALSPHIQRSTTKASFAEWLECF 276
W + + C *+SS +GY+ +TS +R+ QG AW MA+ ++ RS +A WLEC
Sbjct: 591 WRVFCSQETC**MSSTSGYESATSISRSGGQGLAWS*MAVPTYLSRSAKEAFAYHWLECL 412
Query: 277 C*CQASWCWRCLHLSKR**WGASCRSQACHEAASKCSIFSNIKPQHASWCSCYSMACC*H 456
C* + RC++L + * W +C S ACH A +CSI I+ QHASWC C + C +
Sbjct: 411 C*L*KTCGRRCIYLFEG*KW*TACGS*ACHAPAKQCSIICYIQSQHASWCHCNCITCSYN 232
Query: 457 WDHVYCLLQA*DK 495
DHV CLL DK
Sbjct: 231 EDHV*CLL*TKDK 193
Score = 98.7 bits (209), Expect(2) = 5e-024
Identities = 60/126 (47%), Positives = 67/126 (53%)
Frame = +3 / -2
Query: 117 GAMQMSVFRHWI*PVNLQHKSL*PRTCMVWNGAFATYSEVNHEGIFCRVAGVFLLVPSVL 296
G M M+VF WI* NL K PRTCM NG V+ GI +AGV LL L
Sbjct: 571 GDMLMNVFHLWI*VSNLHLKIWWPRTCMELNGGSDISFAVSQGGICLPLAGVSLLALKDL 392
Query: 297 VLEMPSSF*EVIVGSFV*ESGVP*GSKQMFHLQ*YQATACILVFLLQHGMLLTLGPCLLS 476
EM SF* V + + V E GVP SK MFH Y TACILV L H M L PCL+S
Sbjct: 391 WQEMHLSF*GVKMVNCVWELGVPCASKTMFHHLLYPVTACILVSLQLHHMQLQRRPCLVS 212
Query: 477 TTSLGQ 494
+ GQ
Sbjct: 211 IINQGQ 194
Score = 58.3 bits (121), Expect(3) = 9e-091
Identities = 23/33 (69%), Positives = 23/33 (69%)
Frame = +3 / -1
Query: 588 GEEAPEQRFTGTIVGNVDPDQAGWAESKWRYLK 686
GEE PEQRFTGTIVG D D W SKWR LK
Sbjct: 101 GEEVPEQRFTGTIVGISDADPVNWPNSKWRCLK 3
Score = 57.9 bits (120), Expect(2) = 4e-039
Identities = 20/45 (44%), Positives = 34/45 (75%)
Frame = +1 / -1
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFKVKRLQNKGSLGPLL 630
SP+EF++P D+YMES+K N+ +GMRFKM+F+ + + + G ++
Sbjct: 194 SPSEFIIPYDQYMESMKINFSVGMRFKMKFEGEEVPEQRFTGTIV 60
Score = 37.7 bits (76), Expect(2) = 2e-046
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = -1 / +1
Query: 688 TLR*RHLDSAHPA*SGSTFPTMVPVNLCSG 599
TLR H + S S PTMVPVNLCSG
Sbjct: 1 TLRHLHFEFGQFTGSASLIPTMVPVNLCSG 90
Score = 33.1 bits (66), Expect(2) = 5e-024
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2 / -3
Query: 593 RGSRTKVHWDHCWKCGS*SSWMG*I*MALPQG 688
R R K++W+HCW *S + + +PQG
Sbjct: 96 RSPRAKIYWNHCWNK*C*SCELAEFKVEMPQG 1
Score = 32.2 bits (64), Expect(2) = 2e-040
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3 / +3
Query: 686 LEVTPFRFSPSSLIRIHISNNGPSEPLFWSLF 591
LE +P P I I SNNG S+ L W F
Sbjct: 3 LEASPL*IRPVHRISITYSNNGSSKSLLWDFF 98
Score = 22.6 bits (43), Expect(3) = 9e-091
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3 / -3
Query: 531 YGITETKLPYRDEI*NEV*GEEAPEQR 611
YG+ E + +EI +EV*G +P +
Sbjct: 159 YGVNENQFLGWNEIQDEV*GGRSPRAK 79
>gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD303 5' end, mRNA sequence
Length = 596
Score = 293 bits (634), Expect(3) = 9e-091
Identities = 119/135 (88%), Positives = 129/135 (95%)
Frame = +2 / +1
Query: 92 THGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWS 271
THGGFSVLRRHADECLPPLDM++QPP+Q+LVAKDLHGVEWRFRHIFRGQPRRHLL +GWS
Sbjct: 1 THGGFSVLRRHADECLPPLDMSQQPPSQDLVAKDLHGVEWRFRHIFRGQPRRHLLTTGWS 180
Query: 272 VFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATAWHAV 451
VFVS+KRL AGDAFIFLRG++GELRVGVRRAMRQQ NVPSSVISSHSMHLGV+ATA HAV
Sbjct: 181 VFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQNNVPSSVISSHSMHLGVIATASHAV 360
Query: 452 NTGTMFTVYYKPRTS 496
T TMF+VYYKPRTS
Sbjct: 361 TTKTMFSVYYKPRTS 405
Score = 169 bits (363), Expect(2) = 2e-046
Identities = 75/105 (71%), Positives = 84/105 (80%)
Frame = -2 / -1
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRK 316
LVLGL**T+NMV V+TAC AVA TPRCML LDIT+DGT C MARLTPTRSSP SPL+K
Sbjct: 404 LVLGL**TLNMVFVVTACDAVAMTPRCML*LDITDDGTLFCWRMARLTPTRSSPFSPLKK 225
Query: 315 MKASPAPRRLALTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSLAT 181
+ ASPA L LTKTLQP+ +CL G*P + R RHSTPC+SLAT
Sbjct: 224 INASPATSLLELTKTLQPVVSKCLLG*PRKICRNRHSTPCKSLAT 90
Score = 155 bits (332), Expect(2) = 2e-040
Identities = 64/133 (48%), Positives = 92/133 (69%)
Frame = -1 / -3
Query: 493 CPRLVVDSKHGPSVNSMPCCSKNTKMHAVA*YY*RWNICLLPHGTPDSYTKLPTITS*KD 314
CP ++D+KHG N M C +TKMHAV Y WNI LL HGTP+S+T+ T KD
Sbjct: 402 CPWFIIDTKHGLRCNCM*CSCNDTKMHAVTGYNR*WNIVLLAHGTPNSHTQFTIFTPQKD 223
Query: 313 EGISSTKTLGTNKNTPATLQKMPSWLTSEYVAKAPFHTMQVLGYKLLCWRLTGHIQWRKT 134
+ IS K+ NK+TPA+ ++MP WLT++ +++ PF++MQVLG+++L WRL HIQ KT
Sbjct: 222 KCISCHKSFRANKDTPASGKQMPPWLTAKDMSEPPFNSMQVLGHQILRWRLLTHIQRWKT 43
Query: 133 LICMAPQHRESTM 95
I M+P++R+ +M
Sbjct: 42 FISMSPENRKPSM 4
Score = 124 bits (266), Expect(2) = 4e-039
Identities = 56/133 (42%), Positives = 77/133 (57%)
Frame = +1 / +3
Query: 97 WWILGAAAPCR*VSSATGYDPSTSNTRACSQGPAWCGMALSPHIQRSTTKASFAEWLECF 276
W + + C *+SS +GY+ +TS +R+ QG AW MA+ ++ RS +A WLEC
Sbjct: 6 WRVFCSQETC**MSSTSGYESATSISRSGGQGLAWS*MAVPTYLSRSAKEAFAYHWLECL 185
Query: 277 C*CQASWCWRCLHLSKR**WGASCRSQACHEAASKCSIFSNIKPQHASWCSCYSMACC*H 456
C* + RC++L + * W +C S ACH A +CSI I+ QHASWC C + C +
Sbjct: 186 C*L*KTCGRRCIYLFEG*KW*TACGS*ACHAPAKQCSIICYIQSQHASWCHCNCITCSYN 365
Query: 457 WDHVYCLLQA*DK 495
DHV CLL DK
Sbjct: 366 EDHV*CLL*TKDK 404
Score = 98.7 bits (209), Expect(2) = 5e-024
Identities = 60/126 (47%), Positives = 67/126 (53%)
Frame = +3 / +2
Query: 117 GAMQMSVFRHWI*PVNLQHKSL*PRTCMVWNGAFATYSEVNHEGIFCRVAGVFLLVPSVL 296
G M M+VF WI* NL K PRTCM NG V+ GI +AGV LL L
Sbjct: 26 GDMLMNVFHLWI*VSNLHLKIWWPRTCMELNGGSDISFAVSQGGICLPLAGVSLLALKDL 205
Query: 297 VLEMPSSF*EVIVGSFV*ESGVP*GSKQMFHLQ*YQATACILVFLLQHGMLLTLGPCLLS 476
EM SF* V + + V E GVP SK MFH Y TACILV L H M L PCL+S
Sbjct: 206 WQEMHLSF*GVKMVNCVWELGVPCASKTMFHHLLYPVTACILVSLQLHHMQLQRRPCLVS 385
Query: 477 TTSLGQ 494
+ GQ
Sbjct: 386 IINQGQ 403
Score = 58.3 bits (121), Expect(3) = 9e-091
Identities = 23/33 (69%), Positives = 23/33 (69%)
Frame = +3 / +1
Query: 588 GEEAPEQRFTGTIVGNVDPDQAGWAESKWRYLK 686
GEE PEQRFTGTIVG D D W SKWR LK
Sbjct: 496 GEEVPEQRFTGTIVGISDADPVNWPNSKWRCLK 594
Score = 57.9 bits (120), Expect(2) = 4e-039
Identities = 20/45 (44%), Positives = 34/45 (75%)
Frame = +1 / +1
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFKVKRLQNKGSLGPLL 630
SP+EF++P D+YMES+K N+ +GMRFKM+F+ + + + G ++
Sbjct: 403 SPSEFIIPYDQYMESMKINFSVGMRFKMKFEGEEVPEQRFTGTIV 537
Score = 37.7 bits (76), Expect(2) = 2e-046
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = -1 / -1
Query: 688 TLR*RHLDSAHPA*SGSTFPTMVPVNLCSG 599
TLR H + S S PTMVPVNLCSG
Sbjct: 596 TLRHLHFEFGQFTGSASLIPTMVPVNLCSG 507
Score = 33.1 bits (66), Expect(2) = 5e-024
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2 / +3
Query: 593 RGSRTKVHWDHCWKCGS*SSWMG*I*MALPQG 688
R R K++W+HCW *S + + +PQG
Sbjct: 501 RSPRAKIYWNHCWNK*C*SCELAEFKVEMPQG 596
Score = 32.2 bits (64), Expect(2) = 2e-040
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3 / -3
Query: 686 LEVTPFRFSPSSLIRIHISNNGPSEPLFWSLF 591
LE +P P I I SNNG S+ L W F
Sbjct: 594 LEASPL*IRPVHRISITYSNNGSSKSLLWDFF 499
Score = 22.6 bits (43), Expect(3) = 9e-091
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3 / +3
Query: 531 YGITETKLPYRDEI*NEV*GEEAPEQR 611
YG+ E + +EI +EV*G +P +
Sbjct: 438 YGVNENQFLGWNEIQDEV*GGRSPRAK 518
>gb|BX250119.1|BX250119 BX250119 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP032F08, mRNA sequence
Length = 674
Score = 248 bits (537), Expect(2) = 3e-081
Identities = 101/140 (72%), Positives = 119/140 (85%)
Frame = +2 / +1
Query: 77 ASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLL 256
ASDTSTHGGFSV RR A++C PPLD ++Q P+QELVAKDLHG EWRFRHIFRGQPRRHLL
Sbjct: 1 ASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFRHIFRGQPRRHLL 180
Query: 257 QSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMHLGVLAT 436
+GWSVFVS KRL AGDA +FLR ++GELR+G+RRA +QQ++VPSSV+SSH +H GVLA
Sbjct: 181 TTGWSVFVSYKRLVAGDAVLFLRDENGELRLGIRRASQQQSSVPSSVLSSHGIHSGVLAA 360
Query: 437 AWHAVNTGTMFTVYYKPRTS 496
HAV T +MF +YY PRTS
Sbjct: 361 VAHAVATKSMFHIYYNPRTS 420
Score = 124 bits (265), Expect(4) = 1e-038
Identities = 58/105 (55%), Positives = 67/105 (63%)
Frame = -2 / -1
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRK 316
LVLGL** N++ V TA A TP CM WL+ TE+GT CC A P +SP S RK
Sbjct: 419 LVLGL**MWNILFVATA*ATAASTPECMPWLESTEEGTLLCCWEALRIPNLNSPFSSRRK 240
Query: 315 MKASPAPRRLALTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSLAT 181
ASPA L LTKTL P+ +CLRG*PLN+ R HS PC+S AT
Sbjct: 239 STASPATSLL*LTKTLHPVVSKCLRG*PLNICRNLHSLPCKSFAT 105
Score = 93.2 bits (197), Expect(3) = 9e-035
Identities = 45/138 (32%), Positives = 72/138 (52%)
Frame = +1 / +3
Query: 82 *YQHSWWILGAAAPCR*VSSATGYDPSTSNTRACSQGPAWCGMALSPHIQRSTTKASFAE 261
*Y+++W + ++ CR + SA G P+ + +RAC +G AW M + +IQ S ++A
Sbjct: 6 *YKYTWRVFSSSKGCRGLLSALGL*PTKAFSRACRKGFAWKRMEIPAYIQGSASQAFAHY 185
Query: 262 WLECFC*CQASWCWRCLHLSKR**WGASCRSQACHEAASKCSIFSNIKPQHASWCSCYSM 441
+EC C* Q + WRC S * W R+ A +C+ FS ++P H +
Sbjct: 186 RMECLC*LQKACSWRCCTFSAG*KWRIEVRNSKSFPATKQCTFFSALQPWHTFGGASCCS 365
Query: 442 ACC*HWDHVYCLLQA*DK 495
+C H +V LLQ+ D+
Sbjct: 366 SCSCHKKYVPHLLQSKDE 419
Score = 74.4 bits (156), Expect(2) = 3e-081
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = +3 / +1
Query: 591 EEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIE 749
E+A E+R+TGTIVG D D W S+WR KV WDE ++ R +RVSPW+IE
Sbjct: 514 EDATERRYTGTIVGIGDVDPMRWPNSRWRSFKVGWDEHAAQXRQDRVSPWEIE 672
Score = 49.2 bits (101), Expect(3) = 9e-035
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1 / +1
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFKVKRLQNKGSLGPLL 630
SP EFV+P +Y++S ++ IGMRFKMRF+ + + G ++
Sbjct: 418 SPTEFVIPYHKYVKSFNHSFSIGMRFKMRFETEDATERRYTGTIV 552
Score = 43.7 bits (89), Expect(3) = 9e-035
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2 / +3
Query: 608 KVHWDHCWKCGS*SSWMG*I*MALPQGEVG*SFLHSTS*KGFSLANR 748
KVHW++CW *S M * M + QG +G*+ + +GFS+ NR
Sbjct: 531 KVHWNNCWNR*C*SYEMA*FKMEIVQGRMG*ACSTGXAGQGFSMGNR 671
Score = 40.9 bits (83), Expect(4) = 1e-038
Identities = 23/47 (48%), Positives = 25/47 (53%)
Frame = -1 / -1
Query: 736 GETLSGRGMEEASSHLTLR*RHLDSAHPA*SGSTFPTMVPVNLCSGA 596
GETLS SSH TL HL+ H S S PT+VPV L S A
Sbjct: 659 GETLSCLSCAACSSHPTLNDLHLELGHLIGSTSPIPTIVPVYLLSVA 519
Score = 26.7 bits (52), Expect(4) = 1e-038
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2 / -1
Query: 117 RSTENPP*VLVSE 79
R TENPP VLVSE
Sbjct: 41 RGTENPPCVLVSE 3
Score = 24.4 bits (47), Expect(4) = 1e-038
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2 / -3
Query: 585 KPHFKSHPYRVISFQ*FHIAITGNNK 508
K HF+ HP R + F++ + N+K
Sbjct: 507 KSHFEPHPNRK*VVETFYVLVIWNHK 430
>gb|CF386566.1|CF386566 RTDR1_15_D11.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_15_D11_A015 3', mRNA
sequence
Length = 419
Score = 220 bits (475), Expect = 1e-056
Identities = 87/95 (91%), Positives = 92/95 (96%)
Frame = +2 / -2
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDM++QPPTQELVAKDLHG EWRFRHIF
Sbjct: 286 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPTQELVAKDLHGTEWRFRHIF 107
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDS 334
RGQPRRHLL +GWSVFVSAKRL AGDAFIFLRG++
Sbjct: 106 RGQPRRHLLTTGWSVFVSAKRLVAGDAFIFLRGEN 2
>gb|DR054271.1|DR054271 RTCA1_16_G04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_16_G04_A029 3', mRNA sequence
Length = 631
Score = 175 bits (376), Expect = 6e-043
Identities = 74/92 (80%), Positives = 82/92 (89%)
Frame = +2 / +2
Query: 239 PRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMH 418
PRRHLL +GWSVFVS+KRL AGDAFIFLRG++GELRVGVRRAMRQQ NVPSSVISSHSMH
Sbjct: 2 PRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQNNVPSSVISSHSMH 181
Query: 419 LGVLATAWHAVNTGTMFTVYYKPRTSLQLSLL 514
LGV+ATA HAV T TMF+VYYKPR L + +L
Sbjct: 182 LGVIATASHAVTTKTMFSVYYKPRWGLSVKML 277
Score = 134 bits (288), Expect = 9e-031
Identities = 60/84 (71%), Positives = 67/84 (79%)
Frame = -2 / -2
Query: 489 LGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRKMK 310
LGL**T+NMV V+TAC AVA TPRCML LDIT+DGT C MARLTPTRSSP SPL+K+
Sbjct: 252 LGL**TLNMVFVVTACDAVAMTPRCML*LDITDDGTLFCWRMARLTPTRSSPFSPLKKIN 73
Query: 309 ASPAPRRLALTKTLQPLCKRCLRG 238
ASPA L LTKTLQP+ +CL G
Sbjct: 72 ASPATSLLELTKTLQPVVSKCLLG 1
>gb|DR685262.1|DR685262 EST1075339 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB186 3' end, mRNA sequence
Length = 841
Score = 79.0 bits (166), Expect(2) = 3e-031
Identities = 33/58 (56%), Positives = 45/58 (77%)
Frame = +2 / +2
Query: 323 RGDSGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
RG++GELR+G+RRA RQ++ + SSV+S+ + HL VLA A AV T +MF V+Y PRTS
Sbjct: 2 RGENGELRLGIRRATRQKSGILSSVLSNQNAHLSVLAAAASAVATKSMFHVFYNPRTS 175
Score = 77.1 bits (162), Expect(2) = 3e-031
Identities = 33/86 (38%), Positives = 50/86 (58%)
Frame = +3 / +2
Query: 591 EEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPPP 770
E+ E+ +TG I D D A W SKWR LKV WDE ++ + ERVS W+IEP+++
Sbjct: 269 EDTAERSYTGMITAIGDADPARWPGSKWRLLKVEWDEHAANEQQERVSAWEIEPSIAGAG 448
Query: 771 INPLPVHRPKRPRSNAVASLPESSAP 848
+N R KR R+ +++ + + P
Sbjct: 449 LNVSSGTRTKRLRTTLLSTPVDVAIP 526
>gb|DT632793.1|DT632793 EST1147724 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFN79 3' end, mRNA sequence
Length = 783
Score = 79.0 bits (166), Expect(2) = 3e-031
Identities = 33/58 (56%), Positives = 45/58 (77%)
Frame = +2 / +2
Query: 323 RGDSGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
RG++GELR+G+RRA RQ++ + SSV+S+ + HL VLA A AV T +MF V+Y PRTS
Sbjct: 2 RGENGELRLGIRRATRQKSGILSSVLSNQNAHLSVLAAAASAVATKSMFHVFYNPRTS 175
Score = 77.1 bits (162), Expect(2) = 3e-031
Identities = 33/86 (38%), Positives = 50/86 (58%)
Frame = +3 / +2
Query: 591 EEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPPP 770
E+ E+ +TG I D D A W SKWR LKV WDE ++ + ERVS W+IEP+++
Sbjct: 269 EDTAERSYTGMITAIGDADPARWPGSKWRLLKVEWDEHAANEQQERVSAWEIEPSIAGAG 448
Query: 771 INPLPVHRPKRPRSNAVASLPESSAP 848
+N R KR R+ +++ + + P
Sbjct: 449 LNVSSGTRTKRLRTTLLSTPVDVAIP 526
>gb|DR180737.1|DR180737 RTMNUT1_34_B08.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_B08_A029 5', mRNA sequence
Length = 690
Score = 101 bits (216), Expect(3) = 9e-028
Identities = 38/58 (65%), Positives = 46/58 (79%)
Frame = +3 / +2
Query: 588 GEEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVS 761
GEE+PE+RFTGTI+G + D W ESKWR LKV+WDE S +PRPERVSPW+IE V+
Sbjct: 14 GEESPERRFTGTIIGMGEVDNVRWPESKWRSLKVQWDETSVVPRPERVSPWEIETFVA 187
Score = 31.8 bits (63), Expect(3) = 9e-028
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3 / +2
Query: 759 SPPPINPLPVHRPKRPRSNAVASLPE 836
S +NPLP R K+PR N V+S E
Sbjct: 188 SSAALNPLPAPRTKKPRPNLVSSSQE 265
Score = 28.6 bits (56), Expect(3) = 9e-028
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1 / +3
Query: 952 ITVNWTLLISPPCDRQVLIWTRAPLACRGSWVQIFGC 1062
+TV W +L S C V ++ L W+Q GC
Sbjct: 372 VTVRWRVLKSH*CGDPVWTKSKIVLVLEEGWLQSIGC 482
>gb|BF516651.1|BF516651 NXSI_001_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_001_F05 5' similar to Arabidopsis thaliana
sequence At2g28350 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 398
Score = 114 bits (243), Expect = 1e-024
Identities = 44/69 (63%), Positives = 54/69 (78%)
Frame = +2 / +2
Query: 164 PPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGEL 343
PP Q ++AKD+HG W+FRHI+RG PRRHLL +GWS FV+ K+L AGDA +FLR +GEL
Sbjct: 8 PPVQTVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVFLRSVTGEL 187
Query: 344 RVGVRRAMR 370
VGVRR R
Sbjct: 188 CVGVRRXTR 214
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 684,604,540
Number of Sequences: 355925
Number of extensions: 11023895
Number of successful extensions: 73367
Number of sequences better than 1.0e-020: 11
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 17193312120
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)