TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750422.2.1
(1599 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR097823.1|DR097823 STRR1_37_F07.b1_A033 Stem Response R... 173 2e-099
gb|CV031895.1|CV031895 RTNACL1_4_A05.g1_A029 Roots plus add... 302 4e-082
gb|CF394129.1|CF394129 RTDS2_3_A12.g1_A021 Drought-stressed... 211 1e-078
gb|DR180721.1|DR180721 RTMNUT1_34_A04.g1_A029 Roots minus m... 130 1e-061
gb|CO363627.1|CO363627 RTK1_10_G12.g1_A029 Roots minus pota... 221 8e-057
gb|BX254416.1|BX254416 BX254416 Pinus pinaster differenciat... 216 4e-055
gb|CX715595.1|CX715595 RTPQ1_35_E12.b1_A032 Roots treated w... 185 6e-046
gb|CX715667.1|CX715667 RTPQ1_35_E12.g1_A032 Roots treated w... 185 9e-046
gb|BI076992.1|BI076992 NXPV_085_G02_F NXPV (Nsf Xylem Plani... 130 1e-040
gb|DR694411.1|DR694411 EST1084503 Normalized pine embryo li... 158 9e-038
gb|DR388741.1|DR388741 RTHG1_30_E09.b1_A029 Roots plus adde... 156 3e-037
gb|DR689917.1|DR689917 EST1080003 Normalized pine embryo li... 132 4e-033
gb|DT636041.1|DT636041 EST1150972 Normalized pine embryo li... 127 9e-032
gb|DR180645.1|DR180645 RTMNUT1_34_A04.b1_A029 Roots minus m... 137 2e-031
gb|AW587789.1|AW587789 ST67A07 Pine TriplEx shoot tip libra... 120 3e-029
gb|CX648466.1|CX648466 COLD1_28_G06.g1_A029 Root cold Pinus... 75 2e-028
gb|DR093332.1|DR093332 STRR1_7_C11.g1_A033 Stem Response Re... 101 2e-028
gb|CV031827.1|CV031827 RTNACL1_4_A05.b1_A029 Roots plus add... 121 2e-026
gb|DR097897.1|DR097897 STRR1_37_F07.g1_A033 Stem Response R... 114 2e-024
gb|DT625383.1|DT625383 EST1159658 Sequencing ESTs from lobl... 98 5e-024
gb|BI644032.1|BI644032 NXPV_127_C03_F NXPV (Nsf Xylem Plani... 112 5e-024
gb|DR052471.1|DR052471 RTCA1_4_G07.g1_A029 Roots minus calc... 76 8e-024
gb|DR165179.1|DR165179 RTPHOS1_3_D12.b1_A029 Roots minus ph... 101 1e-023
gb|DR072833.1|DR072833 RTDK1_28_H07.g1_A029 Roots, dark Pin... 111 1e-023
gb|CF394941.1|CF394941 RTDS2_8_E04.g1_A021 Drought-stressed... 76 2e-023
gb|CF388938.1|CF388938 RTDR2_16_D02.g1_A021 Loblolly pine r... 78 1e-021
gb|CO364567.1|CO364567 RTK1_16_B03.g1_A029 Roots minus pota... 78 2e-021
gb|DR056059.1|DR056059 RTCA1_27_G03.g1_A029 Roots minus cal... 78 2e-021
gb|DR181411.1|DR181411 RTMNUT1_38_F04.g2_A029 Roots minus m... 78 3e-021
gb|DR160875.1|DR160875 RTFE1_8_C02.g1_A029 Roots minus iron... 78 3e-021
gb|CO161876.1|CO161876 FLD1_31_F03.g1_A029 Root flooded Pin... 55 4e-021
gb|CR354690.1|CR354690 CR354690 Pinus pinaster differenciat... 103 4e-021
gb|DT626747.1|DT626747 EST1159823 Sequencing ESTs from lobl... 78 4e-021
gb|DN459677.1|DN459677 EST955476 Sequencing ESTs from loblo... 78 5e-021
gb|AL750997.1|AL750997 AL750997 RS Pinus pinaster cDNA clon... 70 8e-021
gb|CF396191.1|CF396191 RTDS2_15_B07.g1_A021 Drought-stresse... 76 8e-021
>gb|DR097823.1|DR097823 STRR1_37_F07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_F07_A033 3', mRNA sequence
Length = 840
Score = 173 bits (372), Expect(3) = 2e-099
Identities = 67/98 (68%), Positives = 83/98 (84%)
Frame = -3 / -2
Query: 898 DVELKQNKFLPPEKQIVTANPDINVVELCXXXXXXXVACDGIWDCMSSQQLVDFIHERIN 719
D+E+KQNKFLPPEKQI+TA PDINVVELC +ACDG+WD MSSQ++V+FIHE I+
Sbjct: 338 DMEMKQNKFLPPEKQIITACPDINVVELCEDDEFLVLACDGVWDVMSSQEVVNFIHEHID 159
Query: 718 TESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQFK 605
E +LSAVCE+VLD+CLAPST G+GCDNMT+I+VQ +
Sbjct: 158 VEKNLSAVCEKVLDKCLAPSTALGEGCDNMTIIVVQLQ 45
Score = 160 bits (344), Expect(3) = 2e-099
Identities = 65/91 (71%), Positives = 78/91 (85%)
Frame = -3 / -2
Query: 1174 QDDWASEEGPHSDFAGPTCGSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKP 995
+DD + E H DF+GPT GSTACV+LI+ +L+VANAGDSRCV+SR G+AYNLSRDHKP
Sbjct: 611 EDDDWTSEEAHEDFSGPTSGSTACVSLIQKNKLIVANAGDSRCVLSRKGQAYNLSRDHKP 432
Query: 994 ELAAERERIMKAGGFIHMGRVNGSLNLSRAI 902
+L ERERI++AGGFIH GRVNGSLNL+RAI
Sbjct: 431 DLEKERERIIQAGGFIHAGRVNGSLNLARAI 339
Score = 114 bits (244), Expect(3) = 4e-052
Identities = 51/97 (52%), Positives = 56/97 (57%)
Frame = +3 / +1
Query: 609 NCTRIMVMLSHPSPAIVDGARHLSSTLSHTADRLLSVFIRSWIKSTSCWLDMQSQMPXXX 788
+CT IMVMLS PSP V GARHLS T SHTA+R S + S +K T+ WLDM S P
Sbjct: 49 SCTTIMVMLSQPSPKAVLGARHLSRTFSHTAERFFSTSMCSCMKLTTSWLDMTSHTPSHA 228
Query: 789 XXXXXXXXXXXXXXXXGLAVTICFSGGRNLFCFNSTS 899
G AV ICFSGGRNLFCF S S
Sbjct: 229 RTRNSSSSQSSTTFMSGQAVMICFSGGRNLFCFISIS 339
Score = 94.5 bits (200), Expect(3) = 4e-052
Identities = 49/90 (54%), Positives = 53/90 (58%)
Frame = +3 / +1
Query: 903 IALDKFKLPFTRPIWMKPPAFIIXXXXXXXXXXXXXDKLYAFPPLEITHRESPAFATTSW 1082
IAL +FKLPFTRP +KPPA II D+L A P LE T RESPAFAT S
Sbjct: 340 IALARFKLPFTRPA*IKPPA*IILSLSFSRSGL*SLDRL*A*PFLERTQRESPAFATISL 519
Query: 1083 VFLINATHAVLPHVGPAKSE*GPSSEAQSS 1172
F I+ THAVLP VGP KS S SS
Sbjct: 520 FFWISETHAVLPEVGPEKSSWASSDVQSSS 609
Score = 73.5 bits (154), Expect(2) = 2e-022
Identities = 30/99 (30%), Positives = 56/99 (56%)
Frame = +2 / +3
Query: 608 ELHQDHGHVVAPVSSDR*WSQASVQHSLAHGRQAALRVYTLVDKIHQLLA*HAVPNAITC 787
ELH ++GHVV + WS+ V++ AH + L + + ++ LLA H +P+ ITC
Sbjct: 48 ELHYNNGHVVTTFT*SCTWSKTFVKNLFAHC*KILLNINVFMYEVDNLLARHDIPHPITC 227
Query: 788 YNNKVVIIAELHDVDIRIGRHNLLLGRQEFVLFQFHVSN 904
+ K++I + H++ + ++LL R E +L H+++
Sbjct: 228 QDKKLIIFTKFHNIYVWTSSYDLLFRR*ELILLHLHINS 344
Score = 69.8 bits (146), Expect(3) = 2e-099
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = -3 / -2
Query: 1372 QVLKSEAYSTGDLGAAVHRAFFRMDEMMQGQRGWRELSALGDKINKFSGMIEGLIWS 1202
QV+KSEA GDL ++ AF RMDEMM+GQRG REL+ LGDK ++ + +++ WS
Sbjct: 815 QVVKSEADKNGDLCESLQTAFLRMDEMMKGQRGRRELAILGDKQSRDTTLLDRSTWS 645
Score = 53.3 bits (110), Expect(2) = 2e-022
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +2 / +3
Query: 902 NCP*QV*TSIYSSHMDEAPCFHYPFSLSCKLWFVVPR*IVCLPTP*NNTSGITSICHNK 1078
N P Q+ TSI++ M++A + K+WF++P I+ L +T+GI SICHNK
Sbjct: 339 NSPCQIQTSIHAPSMNKASSLNNSLPFLFKIWFMIP*QIISLTLSRKDTTGIPSICHNK 515
Score = 35.9 bits (72), Expect(3) = 4e-052
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +3 / +1
Query: 1230 LNLFILSPSADSSRQPLCPCIISSILKKALWTAAPRSPVE*ASLLRT* 1373
++L LSP+ +S +PL P IISSIL+ A+ + +SP AS T*
Sbjct: 673 VSLLCLSPNIANSLRPL*PFIISSILRNAV*RLSHKSPFLSASDFTT* 816
>gb|CV031895.1|CV031895 RTNACL1_4_A05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_4_A05_A029 5', mRNA sequence
Length = 775
Score = 302 bits (653), Expect(2) = 4e-082
Identities = 120/162 (74%), Positives = 139/162 (85%)
Frame = -3 / +2
Query: 1087 NTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGGFIHMGRVNGSLNLSR 908
N QL+VANAGDSRCV+SR G++YNLSRDHKPEL ER+RI++AGGFIH GR+NGSLNL+R
Sbjct: 53 NNQLIVANAGDSRCVLSRKGQSYNLSRDHKPELEIERDRILRAGGFIHAGRINGSLNLAR 232
Query: 907 AIGDVELKQNKFLPPEKQIVTANPDINVVELCXXXXXXXVACDGIWDCMSSQQLVDFIHE 728
AIGD+E KQNKFLP EKQIVTANPDINVVELC +ACDG+WD MSSQQ+VDFIHE
Sbjct: 233 AIGDMEFKQNKFLPAEKQIVTANPDINVVELCEDDEFIVLACDGVWDVMSSQQVVDFIHE 412
Query: 727 RINTESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQFKK 602
IN + LS VCE+VL +CLAPST G+GCDNMT+I+VQFKK
Sbjct: 413 HINVDDKLSTVCEKVLAKCLAPSTALGEGCDNMTIIIVQFKK 538
Score = 195 bits (420), Expect = 8e-049
Identities = 90/162 (55%), Positives = 96/162 (59%)
Frame = +3 / -2
Query: 603 FLNCTRIMVMLSHPSPAIVDGARHLSSTLSHTADRLLSVFIRSWIKSTSCWLDMQSQMPX 782
FLNCT +MVMLS PSP VDGARHL+ST S T + L S + S IKST+CWLDM SQ P
Sbjct: 537 FLNCTMMMVMLSQPSPKAVDGARHLASTFSQTVESLSSTLMCSCIKSTTCWLDMTSQTPS 358
Query: 783 XXXXXXXXXXXXXXXXXXGLAVTICFSGGRNLFCFNSTSPIALDKFKLPFTRPIWMKPPA 962
G AVTICFS GRNLFC NS SPIAL KFKLP RP M PPA
Sbjct: 357 HAKTMNSSSSHSSTTFISGFAVTICFSAGRNLFCLNSISPIALAKFKLPLIRPA*MNPPA 178
Query: 963 FIIXXXXXXXXXXXXXDKLYAFPPLEITHRESPAFATTSWVF 1088
I DKLY P LE T RESPAFAT S +F
Sbjct: 177 RRIRSLSISSSGL*SRDKLYD*PFLERTQRESPAFATIS*LF 52
Score = 144 bits (309), Expect = 2e-033
Identities = 64/158 (40%), Positives = 98/158 (62%)
Frame = +2 / -1
Query: 608 ELHQDHGHVVAPVSSDR*WSQASVQHSLAHGRQAALRVYTLVDKIHQLLA*HAVPNAITC 787
ELH D GHV+ ++ *W + +H + + + L+ K+H LLA H +P++I C
Sbjct: 532 ELHYDDGHVITTLT*SC*WRKTFGKHFFTDC*KFIININVLMYKVHNLLARHDIPDSIAC 353
Query: 788 YNNKVVIIAELHDVDIRIGRHNLLLGRQEFVLFQFHVSNCP*QV*TSIYSSHMDEAPCFH 967
+N+++I+ LH++ I I +NLL R++FVLF+FH+SN P Q+* SI +S M+E+
Sbjct: 352 QDNELIILT*LHNIYIWIRSYNLLFSREKFVLFEFHISNSPRQI*ASIDTSSMNESSSSK 173
Query: 968 YPFSLSCKLWFVVPR*IVCLPTP*NNTSGITSICHNKL 1081
+ KLW V+ +V L * +T+GITSICHNKL
Sbjct: 172 NSIPFNLKLWLVIS*QVV*LTLS*EDTTGITSICHNKL 59
Score = 24.9 bits (48), Expect(2) = 4e-082
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 1123 TCGSTACVALIRNTQLV 1073
T GSTACVAL++ L+
Sbjct: 18 TSGSTACVALLQIISLL 68
>gb|CF394129.1|CF394129 RTDS2_3_A12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_A12_A021 5', mRNA sequence
Length = 702
Score = 211 bits (456), Expect(2) = 1e-078
Identities = 87/118 (73%), Positives = 101/118 (85%)
Frame = -3 / +3
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGGFIHMG 938
GSTACV+LI+ +L+VANAGDSRCV+SR G+AYNLSRDHKP+L ERERI++AGGFIH G
Sbjct: 6 GSTACVSLIQKNKLIVANAGDSRCVLSRKGQAYNLSRDHKPDLEKERERIIQAGGFIHAG 185
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDINVVELCXXXXXXXVACDGIWDC 764
RVNGSLNL+RAIGD+E+KQNKFLPPEKQI+TA PDINVVELC +ACDG C
Sbjct: 186 RVNGSLNLARAIGDMEMKQNKFLPPEKQIITACPDINVVELCEDDEFLVLACDGGVGC 359
Score = 123 bits (264), Expect(2) = 5e-044
Identities = 59/94 (62%), Positives = 63/94 (67%)
Frame = +3 / -3
Query: 837 GLAVTICFSGGRNLFCFNSTSPIALDKFKLPFTRPIWMKPPAFIIXXXXXXXXXXXXXDK 1016
G AV ICFSGGRNLFCF S SPIAL +FKLPFTRP +KPPA II D+
Sbjct: 286 GQAVMICFSGGRNLFCFISISPIALARFKLPFTRPA*IKPPA*IILSLSFSRSGL*SLDR 107
Query: 1017 LYAFPPLEITHRESPAFATTSWVFLINATHAVLP 1118
L A P LE T RESPAFAT S F I+ THAVLP
Sbjct: 106 L*A*PFLERTQRESPAFATISLFFWISETHAVLP 5
Score = 103 bits (219), Expect(2) = 1e-078
Identities = 38/57 (66%), Positives = 50/57 (87%)
Frame = -3 / +1
Query: 775 IWDCMSSQQLVDFIHERINTESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQFK 605
+WD MSSQ++V+FIHE I+ E +LSAVCE+VLD+CLAPST G+GCDNMT+I+VQ +
Sbjct: 349 VWDVMSSQEVVNFIHEHIDVEKNLSAVCEKVLDKCLAPSTALGEGCDNMTIIVVQLQ 519
Score = 88.1 bits (186), Expect(2) = 9e-023
Identities = 36/100 (36%), Positives = 59/100 (59%)
Frame = +2 / -2
Query: 779 ITCYNNKVVIIAELHDVDIRIGRHNLLLGRQEFVLFQFHVSNCP*QV*TSIYSSHMDEAP 958
ITC + K++I + H++ + ++LL R E +L H+SN P Q+ TSI++ M++A
Sbjct: 344 ITCQDKKLIIFTKFHNIYVWTSSYDLLFRR*ELILLHLHISNSPCQIQTSIHAPSMNKAS 165
Query: 959 CFHYPFSLSCKLWFVVPR*IVCLPTP*NNTSGITSICHNK 1078
+ K+WF++P I+ L +T+GI SICHNK
Sbjct: 164 SLNNSLPFLFKIWFMIP*QIISLTLSRKDTTGIPSICHNK 45
Score = 75.8 bits (159), Expect(2) = 5e-044
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = +3 / -2
Query: 609 NCTRIMVMLSHPSPAIVDGARHLSSTLSHTADRLLSVFIRSWIKSTSCWLDMQS 770
+CT IMVMLS PSP V GARHLS T SHTA+R S + S +K T+ WLDM S
Sbjct: 515 SCTTIMVMLSQPSPKAVLGARHLSRTFSHTAERFFSTSMCSCMKLTTSWLDMTS 354
Score = 40.0 bits (81), Expect(2) = 9e-023
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2 / -1
Query: 608 ELHQDHGHVVAPVSSDR*WSQASVQHSLAHGRQAALRVYTLVDKIHQLLA*HAVPN 775
ELH ++GHVV + WS+ V++ AH + L + + ++ LLA H +P+
Sbjct: 516 ELHYNNGHVVTTFT*SCTWSKTFVKNLFAHC*KILLNINVFMYEVDNLLARHDIPH 349
>gb|DR180721.1|DR180721 RTMNUT1_34_A04.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_A04_A029 5', mRNA sequence
Length = 689
Score = 130 bits (279), Expect(3) = 1e-061
Identities = 49/66 (74%), Positives = 61/66 (92%)
Frame = -3 / +1
Query: 1573 PKTDKLSENGENDRLKLGLSSMQGWRATMEDAHSALLDLDSETAFFGVFDGHGGRVVAKF 1394
P+TDK+SE+GEN ++K G S+MQGWRA+MEDAH+A+LD DS T+FFGV+DGHGG+VVAKF
Sbjct: 142 PRTDKVSEDGENCQIKYGASNMQGWRASMEDAHAAVLDFDSCTSFFGVYDGHGGKVVAKF 321
Query: 1393 CAKYLH 1376
CAKYLH
Sbjct: 322 CAKYLH 339
Score = 76.7 bits (161), Expect(3) = 1e-061
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = -3 / +1
Query: 1174 QDDWASEEGPHSDFAGPTCGSTACVALIRNTQLVVANAGDSRCVISR 1034
+DD + E H DF+GPT GSTACV+LI+ +L+VANAGDSRCV+SR
Sbjct: 544 EDDDWTSEEAHEDFSGPTSGSTACVSLIQKNKLIVANAGDSRCVLSR 684
Score = 69.8 bits (146), Expect(3) = 1e-061
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = -3 / +1
Query: 1372 QVLKSEAYSTGDLGAAVHRAFFRMDEMMQGQRGWRELSALGDKINKFSGMIEGLIWS 1202
QV+KSEA GDL ++ AF RMDEMM+GQRG REL+ LGDK ++ + +++ WS
Sbjct: 340 QVVKSEADKNGDLCESLQTAFLRMDEMMKGQRGRRELAILGDKQSRDTTLLDRSTWS 510
Score = 65.2 bits (136), Expect(3) = 5e-027
Identities = 34/68 (50%), Positives = 42/68 (61%)
Frame = +2 / -3
Query: 1376 MQIFCTEFGNDSSSMTIKNTKECCLAIKI*QC*MSIFHGCSPSLHR*KT*LKSIIFSIFR 1555
M+IF T+FGN+ +SM I + K+ C IKI C M IFH +P LH * T IFSIF
Sbjct: 339 MKIFGTKFGNNFTSMAIIDPKKRCATIKIKNCCMRIFHTGTPPLHI*CTIFDLAIFSIF* 160
Query: 1556 *LVSFWST 1579
LV W+T
Sbjct: 159 HLVCPWTT 136
Score = 59.3 bits (123), Expect(3) = 5e-027
Identities = 29/48 (60%), Positives = 30/48 (62%)
Frame = +3 / -1
Query: 1029 PPLEITHRESPAFATTSWVFLINATHAVLPHVGPAKSE*GPSSEAQSS 1172
P LE T RESPAFAT S F I+ THAVLP VGP KS S SS
Sbjct: 689 PFLERTQRESPAFATISLFFWISETHAVLPEVGPEKSSWASSDVQSSS 546
Score = 35.9 bits (72), Expect(3) = 5e-027
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +3 / -1
Query: 1230 LNLFILSPSADSSRQPLCPCIISSILKKALWTAAPRSPVE*ASLLRT* 1373
++L LSP+ +S +PL P IISSIL+ A+ + +SP AS T*
Sbjct: 482 VSLLCLSPNIANSLRPL*PFIISSILRNAV*RLSHKSPFLSASDFTT* 339
>gb|CO363627.1|CO363627 RTK1_10_G12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_10_G12_A029 5', mRNA sequence
Length = 680
Score = 221 bits (478), Expect = 8e-057
Identities = 88/119 (73%), Positives = 100/119 (84%)
Frame = -3 / -1
Query: 958 GGFIHMGRVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDINVVELCXXXXXXXVACD 779
GGFIH GR+NGSLNL+RAIGD+E KQNKFLP EKQIVTANPDINVVELC +ACD
Sbjct: 680 GGFIHAGRINGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDINVVELCEDDEFIVLACD 501
Query: 778 GIWDCMSSQQLVDFIHERINTESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQFKK 602
G+WD MSSQQ+VDFIHE IN + LS VCE+VL +CLAPST G+GCDNMT+I+VQFKK
Sbjct: 500 GVWDVMSSQQVVDFIHEHINVDDKLSTVCEKVLAKCLAPSTALGEGCDNMTIIIVQFKK 324
Score = 160 bits (345), Expect = 2e-038
Identities = 69/118 (58%), Positives = 74/118 (62%)
Frame = +3 / +1
Query: 603 FLNCTRIMVMLSHPSPAIVDGARHLSSTLSHTADRLLSVFIRSWIKSTSCWLDMQSQMPX 782
FLNCT +MVMLS PSP VDGARHL+ST S T + L S + S IKST+CWLDM SQ P
Sbjct: 325 FLNCTMMMVMLSQPSPKAVDGARHLASTFSQTVESLSSTLMCSCIKSTTCWLDMTSQTPS 504
Query: 783 XXXXXXXXXXXXXXXXXXGLAVTICFSGGRNLFCFNSTSPIALDKFKLPFTRPIWMKP 956
G AVTICFS GRNLFC NS SPIAL KFKLP RP M P
Sbjct: 505 HAKTMNSSSSHSSTTFISGFAVTICFSAGRNLFCLNSISPIALAKFKLPLIRPA*MNP 678
Score = 107 bits (229), Expect = 2e-022
Identities = 45/116 (38%), Positives = 74/116 (63%)
Frame = +2 / +3
Query: 608 ELHQDHGHVVAPVSSDR*WSQASVQHSLAHGRQAALRVYTLVDKIHQLLA*HAVPNAITC 787
ELH D GHV+ ++ *W + +H + + + L+ K+H LLA H +P++I C
Sbjct: 330 ELHYDDGHVITTLT*SC*WRKTFGKHFFTDC*KFIININVLMYKVHNLLARHDIPDSIAC 509
Query: 788 YNNKVVIIAELHDVDIRIGRHNLLLGRQEFVLFQFHVSNCP*QV*TSIYSSHMDEA 955
+N+++I+ LH++ I I +NL R++FVLF+FH+SN P Q+* SI +S M+E+
Sbjct: 510 QDNELIILT*LHNIYIWIRSYNLFFSREKFVLFEFHISNSPRQI*ASIDTSSMNES 677
>gb|BX254416.1|BX254416 BX254416 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP098D02, mRNA sequence
Length = 685
Score = 216 bits (466), Expect = 4e-055
Identities = 86/117 (73%), Positives = 98/117 (83%)
Frame = -3 / +3
Query: 952 FIHMGRVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDINVVELCXXXXXXXVACDGI 773
FIH GR+NGSLNL+RAIGD+E KQNKFLP EKQIVTANPDINVVELC +ACDG+
Sbjct: 3 FIHAGRINGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDINVVELCEDDEFIVLACDGV 182
Query: 772 WDCMSSQQLVDFIHERINTESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQFKK 602
WD MSSQQ+VDFIHE IN + LS VCE+VL +CLAPST G+GCDNMT+I+VQFKK
Sbjct: 183 WDVMSSQQVVDFIHEHINVDDKLSTVCEKVLAKCLAPSTALGEGCDNMTIIIVQFKK 353
Score = 157 bits (338), Expect = 2e-037
Identities = 67/113 (59%), Positives = 72/113 (63%)
Frame = +3 / -1
Query: 603 FLNCTRIMVMLSHPSPAIVDGARHLSSTLSHTADRLLSVFIRSWIKSTSCWLDMQSQMPX 782
FLNCT +MVMLS PSP VDGARHL+ST S T + L S + S IKST+CWLDM SQ P
Sbjct: 352 FLNCTMMMVMLSQPSPKAVDGARHLASTFSQTVESLSSTLMCSCIKSTTCWLDMTSQTPS 173
Query: 783 XXXXXXXXXXXXXXXXXXGLAVTICFSGGRNLFCFNSTSPIALDKFKLPFTRP 941
G AVTICFS GRNLFC NS SPIAL KFKLP RP
Sbjct: 172 HAKTMNSSSSHSSTTFISGFAVTICFSAGRNLFCLNSISPIALAKFKLPLIRP 14
Score = 104 bits (221), Expect = 2e-021
Identities = 44/115 (38%), Positives = 73/115 (63%)
Frame = +2 / -3
Query: 608 ELHQDHGHVVAPVSSDR*WSQASVQHSLAHGRQAALRVYTLVDKIHQLLA*HAVPNAITC 787
ELH D GHV+ ++ *W + +H + + + L+ K++ LLA H +P++I C
Sbjct: 347 ELHYDDGHVITTLT*SC*WCKTFGKHFFTDC*KFIININVLMYKVNNLLARHDIPDSIAC 168
Query: 788 YNNKVVIIAELHDVDIRIGRHNLLLGRQEFVLFQFHVSNCP*QV*TSIYSSHMDE 952
+N+++I+ LH++ I I +NL R++FVLF+FH+SN P Q+* SI +S M+E
Sbjct: 167 QDNELIILT*LHNIYIWIRSYNLFFSREKFVLFEFHISNSPRQI*ASIDTSSMNE 3
>gb|CX715595.1|CX715595 RTPQ1_35_E12.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_35_E12_A032 3', mRNA sequence
Length = 557
Score = 185 bits (399), Expect = 6e-046
Identities = 72/97 (74%), Positives = 89/97 (91%)
Frame = -3 / -2
Query: 1576 TPKTDKLSENGENDRLKLGLSSMQGWRATMEDAHSALLDLDSETAFFGVFDGHGGRVVAK 1397
+PKTDKLSE+GEN+R++ GLSSMQGWRATMEDAH+A+ DLD+ T+FFGV+DGHGG+VV+K
Sbjct: 292 SPKTDKLSEDGENERIRFGLSSMQGWRATMEDAHAAIPDLDNCTSFFGVYDGHGGKVVSK 113
Query: 1396 FCAKYLHGQVLKSEAYSTGDLGAAVHRAFFRMDEMMQ 1286
FCAKYLH QVLKSEAY+ GDL ++ RAF+RMDEMM+
Sbjct: 112 FCAKYLHTQVLKSEAYTNGDLCGSLRRAFYRMDEMMR 2
>gb|CX715667.1|CX715667 RTPQ1_35_E12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_35_E12_A032 5', mRNA sequence
Length = 599
Score = 185 bits (398), Expect = 9e-046
Identities = 74/104 (71%), Positives = 85/104 (81%)
Frame = -3 / -3
Query: 913 SRAIGDVELKQNKFLPPEKQIVTANPDINVVELCXXXXXXXVACDGIWDCMSSQQLVDFI 734
+RAIGD+E KQNKFLP EKQIVTANPDINVVELC +ACDG+WD MSSQQ+VDFI
Sbjct: 597 ARAIGDMEFKQNKFLPAEKQIVTANPDINVVELCEDDEFIVLACDGVWDVMSSQQVVDFI 418
Query: 733 HERINTESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQFKK 602
HE IN + LS VCE+VL +C APST G+GCDNMT+I+VQFKK
Sbjct: 417 HEHINVDDKLSTVCEKVLAKCPAPSTALGEGCDNMTIIIVQFKK 286
Score = 138 bits (295), Expect = 1e-031
Identities = 59/103 (57%), Positives = 64/103 (62%)
Frame = +3 / +2
Query: 603 FLNCTRIMVMLSHPSPAIVDGARHLSSTLSHTADRLLSVFIRSWIKSTSCWLDMQSQMPX 782
FLNCT +MVMLS PSP VDGA HL+ST S T + L S + S IKST+CWLDM SQ P
Sbjct: 287 FLNCTMMMVMLSQPSPKAVDGAGHLASTFSQTVESLSSTLMCSCIKSTTCWLDMTSQTPS 466
Query: 783 XXXXXXXXXXXXXXXXXXGLAVTICFSGGRNLFCFNSTSPIAL 911
G AVTICFS GRNLFC NS SPIAL
Sbjct: 467 HAKTMNSSSSHSSTTFISGFAVTICFSAGRNLFCLNSISPIAL 595
>gb|BI076992.1|BI076992 NXPV_085_G02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_085_G02 5' similar to Arabidopsis
thaliana sequence At2g25070 putative protein phosphatase
2C see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 493
Score = 130 bits (279), Expect(2) = 1e-040
Identities = 49/66 (74%), Positives = 61/66 (92%)
Frame = -3 / +3
Query: 1573 PKTDKLSENGENDRLKLGLSSMQGWRATMEDAHSALLDLDSETAFFGVFDGHGGRVVAKF 1394
P+TDK+SE+GEN ++K G S+MQGWRA+MEDAH+A+LD DS T+FFGV+DGHGG+VVAKF
Sbjct: 123 PRTDKVSEDGENCQIKYGASNMQGWRASMEDAHAAVLDFDSCTSFFGVYDGHGGKVVAKF 302
Query: 1393 CAKYLH 1376
CAKYLH
Sbjct: 303 CAKYLH 320
Score = 57.4 bits (119), Expect(2) = 1e-040
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = -3 / +3
Query: 1372 QVLKSEAYSTGDLGAAVHRAFFRMDEMMQGQRGWRELSALGDKINKFSGMIEGLIWS 1202
QV+KS A GDL ++ AF RMDEMM+GQ RE LGDK + + +++ WS
Sbjct: 321 QVVKSXADKNGDLCESLXXAFLRMDEMMKGQXXRREXXILGDKQSXDTTLLDXXTWS 491
>gb|DR694411.1|DR694411 EST1084503 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC15 3' end, mRNA sequence
Length = 571
Score = 158 bits (340), Expect = 9e-038
Identities = 61/79 (77%), Positives = 74/79 (93%)
Frame = -3 / +1
Query: 1576 TPKTDKLSENGENDRLKLGLSSMQGWRATMEDAHSALLDLDSETAFFGVFDGHGGRVVAK 1397
+PKTDKLSE+GEN+R++ GLSSMQGWRATMEDAH+A+ DLD+ T+FFGV+DGHGG+VV+K
Sbjct: 334 SPKTDKLSEDGENERIRFGLSSMQGWRATMEDAHAAIPDLDNCTSFFGVYDGHGGKVVSK 513
Query: 1396 FCAKYLHGQVLKSEAYSTG 1340
FCAKYLH QVLKSEAY+ G
Sbjct: 514 FCAKYLHTQVLKSEAYTNG 570
>gb|DR388741.1|DR388741 RTHG1_30_E09.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_30_E09_A029 3', mRNA sequence
Length = 554
Score = 156 bits (336), Expect = 3e-037
Identities = 62/87 (71%), Positives = 71/87 (81%)
Frame = -3 / +2
Query: 862 EKQIVTANPDINVVELCXXXXXXXVACDGIWDCMSSQQLVDFIHERINTESSLSAVCERV 683
EKQIVTANPDINVVELC +ACDG+WD MSSQQ+VDFIHE IN + LS VCE+V
Sbjct: 2 EKQIVTANPDINVVELCEDDEFIVLACDGVWDVMSSQQVVDFIHEHINVDDKLSTVCEKV 181
Query: 682 LDRCLAPSTIAGDGCDNMTMILVQFKK 602
L +CLAPST G+GCDNMT+I+VQFKK
Sbjct: 182 LAKCLAPSTALGEGCDNMTIIIVQFKK 262
Score = 110 bits (234), Expect = 4e-023
Identities = 47/87 (54%), Positives = 52/87 (59%)
Frame = +3 / -3
Query: 603 FLNCTRIMVMLSHPSPAIVDGARHLSSTLSHTADRLLSVFIRSWIKSTSCWLDMQSQMPX 782
FLNCT +MVMLS PSP VDGARHL+ST S T + L S + S IKST+CWLDM SQ P
Sbjct: 261 FLNCTMMMVMLSQPSPKAVDGARHLASTFSQTVESLSSTLMCSCIKSTTCWLDMTSQTPS 82
Query: 783 XXXXXXXXXXXXXXXXXXGLAVTICFS 863
G AVTICFS
Sbjct: 81 HAKTMNSSSSHSSTTFISGFAVTICFS 1
>gb|DR689917.1|DR689917 EST1080003 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACO93 3' end, mRNA sequence
Length = 833
Score = 132 bits (283), Expect(2) = 4e-033
Identities = 57/154 (37%), Positives = 89/154 (57%)
Frame = -3 / +1
Query: 1129 GPTCGSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGGF 950
G + G+TA A++ L+VANAGD R V+SR GKA +SRDH+P ER+RI +GG+
Sbjct: 319 GLSSGTTALTAVVSGRILLVANAGDCRAVLSRCGKAVEMSRDHRPRCTRERKRIEGSGGY 498
Query: 949 IHMGRVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDINVVELCXXXXXXXVACDGIW 770
+ +NG LN++RA+GD ++ K L ++A P+I +L + CDGIW
Sbjct: 499 VVGDYLNGRLNVTRALGDWHIEGMKNLGAGGGPLSAEPEIKKAKLSKDDEFLIIGCDGIW 678
Query: 769 DCMSSQQLVDFIHERINTESSLSAVCERVLDRCL 668
+ +SQ VDF ++ + L C+ ++D +
Sbjct: 679 EAFTSQNAVDFARRKLQEHNDLETCCKELVDEAI 780
Score = 34.1 bits (68), Expect(2) = 4e-033
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3 / +1
Query: 1459 LDSETAFFGVFDGHGGRVVAKF 1394
+ S AF+GVFDGH G+ A F
Sbjct: 127 VQSPVAFYGVFDGHEGKAAAHF 192
>gb|DT636041.1|DT636041 EST1150972 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGN39 3' end, mRNA sequence
Length = 826
Score = 127 bits (273), Expect(2) = 9e-032
Identities = 56/147 (38%), Positives = 85/147 (57%)
Frame = -3 / +3
Query: 1129 GPTCGSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGGF 950
G + G+TA A++ L+VANAGD R V+SR GKA +SRDH+P ER+RI +GG+
Sbjct: 327 GLSSGTTALTAVVSGRILLVANAGDCRAVLSRCGKAVEMSRDHRPRCTRERKRIEGSGGY 506
Query: 949 IHMGRVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDINVVELCXXXXXXXVACDGIW 770
+ +NG LN++RA+GD ++ K L ++A P+I +L + CDGIW
Sbjct: 507 VVGDYLNGRLNVTRALGDWHIEGMKNLGAGGGPLSAEPEIKKAKLSKDDEFLIIGCDGIW 686
Query: 769 DCMSSQQLVDFIHERINTESSLSAVCE 689
+ +SQ VDF ++ + L C+
Sbjct: 687 EAFTSQNAVDFARRKLQEHNDLETCCK 767
Score = 34.1 bits (68), Expect(2) = 9e-032
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3 / +3
Query: 1459 LDSETAFFGVFDGHGGRVVAKF 1394
+ S AF+GVFDGH G+ A F
Sbjct: 135 VQSPVAFYGVFDGHEGKAAAHF 200
>gb|DR180645.1|DR180645 RTMNUT1_34_A04.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_A04_A029 3', mRNA sequence
Length = 840
Score = 137 bits (294), Expect = 2e-031
Identities = 55/85 (64%), Positives = 69/85 (81%)
Frame = -3 / +2
Query: 859 KQIVTANPDINVVELCXXXXXXXVACDGIWDCMSSQQLVDFIHERINTESSLSAVCERVL 680
KQI+TA PDINVVELC +ACDG+ D MSSQ++V+FIHE I+ E +LSAVCE+VL
Sbjct: 2 KQIITACPDINVVELCEDDEFLVLACDGVRDVMSSQEVVNFIHEHIDVEKNLSAVCEKVL 181
Query: 679 DRCLAPSTIAGDGCDNMTMILVQFK 605
D+CLAPST G+GCDNMT+I+VQ +
Sbjct: 182 DKCLAPSTALGEGCDNMTIIVVQLQ 256
>gb|AW587789.1|AW587789 ST67A07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST67A07, mRNA sequence
Length = 474
Score = 120 bits (256), Expect(2) = 3e-029
Identities = 46/66 (69%), Positives = 58/66 (87%)
Frame = -3 / +3
Query: 1573 PKTDKLSENGENDRLKLGLSSMQGWRATMEDAHSALLDLDSETAFFGVFDGHGGRVVAKF 1394
P+TDK+SE+GEN ++K G S+MQGWRA+MEDAH+A+LD DS T+FFGV+D G +VVAKF
Sbjct: 189 PRTDKVSEDGENCQIKYGASNMQGWRASMEDAHAAVLDFDSCTSFFGVYDXXGXKVVAKF 368
Query: 1393 CAKYLH 1376
CAKYLH
Sbjct: 369 CAKYLH 386
Score = 29.9 bits (59), Expect(2) = 3e-029
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3 / +3
Query: 1372 QVLKSEAYSTGDLGAAVHRAFFRMDEMMQ 1286
QV+KSEA L ++ A RMDEMM+
Sbjct: 387 QVVKSEADKNXXLCXSLXXAXLRMDEMMK 473
>gb|CX648466.1|CX648466 COLD1_28_G06.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_G06_A029 5', mRNA sequence
Length = 768
Score = 74.8 bits (157), Expect(4) = 2e-028
Identities = 34/62 (54%), Positives = 41/62 (66%)
Frame = -3 / +3
Query: 1006 DHKPELAAERERIMKAGGFIHMGRVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDIN 827
DHKP ER+RI +AGGF+ GRVNG L LSRAIGD LKQN L Q+V+ PD+
Sbjct: 534 DHKPTDFPERQRIERAGGFVVGGRVNGILALSRAIGDFSLKQNPSLHLFDQLVSPEPDVT 713
Query: 826 VV 821
+
Sbjct: 714 SI 719
Score = 48.7 bits (100), Expect(4) = 2e-028
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -3 / +3
Query: 1540 NDRLKLGLSSMQGWRATMEDAHSALLDLDSETAFFGVF 1427
N+++++G SMQG+RATMEDAHS LDL G F
Sbjct: 51 NEQVRVGACSMQGFRATMEDAHSVKLDLGDRHQGIGYF 164
Score = 41.8 bits (85), Expect(4) = 2e-028
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3 / +3
Query: 1441 FFGVFDGHGGRVVAKFCAKYLHGQVLKSEAYSTGDLGAAVHR 1316
+FG+FDGHGG + C+ LH + + + ++ VHR
Sbjct: 159 YFGLFDGHGGSRASAHCSDVLHNMCQELPTFGSSEIKQLVHR 284
Score = 24.4 bits (47), Expect(4) = 2e-028
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -3 / +3
Query: 1078 LVVANAGDSRCV 1043
++++N GDSRCV
Sbjct: 453 IMISNTGDSRCV 488
>gb|DR093332.1|DR093332 STRR1_7_C11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_7_C11_A033 5', mRNA sequence
Length = 900
Score = 101 bits (216), Expect(3) = 2e-028
Identities = 44/83 (53%), Positives = 57/83 (68%)
Frame = -3 / +3
Query: 1123 TCGSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGGFIH 944
+CG+T ALI LVVANAGD R V+ R GKA +SRDHKP+ +ER RI GGF+
Sbjct: 324 SCGTTVLTALIVGRSLVVANAGDCRAVLCRRGKAVEMSRDHKPDCLSERLRIESLGGFVD 503
Query: 943 MGRVNGSLNLSRAIGDVELKQNK 875
G VNG L+++RA+GD ++K K
Sbjct: 504 DGYVNGYLSVARALGDWDMKLPK 572
Score = 36.3 bits (73), Expect(3) = 2e-028
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = -3 / +3
Query: 850 VTANPDINVVELCXXXXXXXVACDGIWDCMSSQQLVDFIHERINTESSLSAVCERVLDRC 671
++A P+ + +L + CDGIWD MSS V + + E ++
Sbjct: 588 LSAEPEFRLADLTEEDEFLIIGCDGIWDVMSSDCAVSIARRELRRHNDPQQCSEELVLEA 767
Query: 670 LAPSTI 653
L T+
Sbjct: 768 LRRKTL 785
Score = 33.1 bits (66), Expect(3) = 2e-028
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3 / +3
Query: 1447 TAFFGVFDGHGGRVVAKF 1394
+AF+GVFDGHGG A F
Sbjct: 114 SAFYGVFDGHGGAEAAIF 167
>gb|CV031827.1|CV031827 RTNACL1_4_A05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_4_A05_A029 3', mRNA sequence
Length = 446
Score = 121 bits (258), Expect = 2e-026
Identities = 46/71 (64%), Positives = 55/71 (77%)
Frame = -3 / +2
Query: 814 CXXXXXXXVACDGIWDCMSSQQLVDFIHERINTESSLSAVCERVLDRCLAPSTIAGDGCD 635
C +ACDG+WD MSSQQ+VDFIHE IN + LS VCE+VL +CLAPST G+GCD
Sbjct: 2 CEDDEFIVLACDGVWDVMSSQQVVDFIHEHINVDDKLSTVCEKVLAKCLAPSTALGEGCD 181
Query: 634 NMTMILVQFKK 602
NMT+I+VQFKK
Sbjct: 182 NMTIIIVQFKK 214
>gb|DR097897.1|DR097897 STRR1_37_F07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_F07_A033 5', mRNA sequence
Length = 702
Score = 114 bits (244), Expect = 2e-024
Identities = 42/61 (68%), Positives = 54/61 (88%)
Frame = -3 / -2
Query: 787 ACDGIWDCMSSQQLVDFIHERINTESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQF 608
ACDG+WD MSSQ++V+FIHE I+ E +LSAVCE+VLD+CLAPST G+GCDNMT+I+VQ
Sbjct: 701 ACDGVWDVMSSQEVVNFIHEHIDVEKNLSAVCEKVLDKCLAPSTALGEGCDNMTIIVVQL 522
Query: 607 K 605
+
Sbjct: 521 Q 519
>gb|DT625383.1|DT625383 EST1159658 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAO95 5' end, mRNA sequence
Length = 947
Score = 98.2 bits (208), Expect(2) = 5e-024
Identities = 44/79 (55%), Positives = 55/79 (69%)
Frame = -3 / +1
Query: 1132 AGPTCGSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGG 953
AG G+TA VALI L+VANAGD R V+SR GKA +SRDH+P ER RI +GG
Sbjct: 700 AGLCSGTTALVALIIGRYLLVANAGDCRAVLSRRGKAIEMSRDHRPGCTKERIRIEASGG 879
Query: 952 FIHMGRVNGSLNLSRAIGD 896
+I G +NG LN++RA+GD
Sbjct: 880 YIDDGYLNGQLNVTRALGD 936
Score = 38.2 bits (77), Expect(2) = 5e-024
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3 / +1
Query: 1444 AFFGVFDGHGGRVVAKFCAKYLHGQVLK 1361
AF+GVFDGHGG+ A+F L ++K
Sbjct: 526 AFYGVFDGHGGKHAAQFACDKLPSLIVK 609
>gb|BI644032.1|BI644032 NXPV_127_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_127_C03 5' similar to Arabidopsis
thaliana sequence At2g25070 putative protein phosphatase
2C see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 112 bits (240), Expect = 5e-024
Identities = 41/60 (68%), Positives = 53/60 (88%)
Frame = -3 / +2
Query: 784 CDGIWDCMSSQQLVDFIHERINTESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQFK 605
CDG+WD MSSQ++V+FIHE I+ E +LSAVCE+VLD+CLAPST G+GCDNMT+I+VQ +
Sbjct: 2 CDGVWDVMSSQEVVNFIHEHIDVEKNLSAVCEKVLDKCLAPSTALGEGCDNMTIIVVQLQ 181
>gb|DR052471.1|DR052471 RTCA1_4_G07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_G07_A029 5', mRNA sequence
Length = 849
Score = 76.2 bits (160), Expect(4) = 8e-024
Identities = 32/60 (53%), Positives = 42/60 (70%)
Frame = -3 / +2
Query: 1132 AGPTCGSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGG 953
A T G+TA +A++ + Q+++AN GDSR V+ RGGKA LS DHKP+ A E RI AGG
Sbjct: 353 APETVGTTAVIAIVGSCQVIIANCGDSRAVLCRGGKAIPLSDDHKPQRADEMARIEAAGG 532
Score = 38.6 bits (78), Expect(4) = 8e-024
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +2
Query: 1441 FFGVFDGHGGRVVAKFCAKYLH 1376
FFGV+DGHGG + FC LH
Sbjct: 86 FFGVYDGHGGAQASNFCKDRLH 151
Score = 34.1 bits (68), Expect(4) = 8e-024
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3 / +2
Query: 859 KQIVTANPDINVVELCXXXXXXXVACDGIWDCMSSQQLVDFIHERI 722
K + +PDI E +A DG+WD +S+++ D RI
Sbjct: 608 KPSIIPDPDITFTERVKEDECLILASDGLWDVISNEEACDIARRRI 745
Score = 25.4 bits (49), Expect(4) = 8e-024
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3 / +2
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPE 860
RV G L +SRAIGD LK + P+
Sbjct: 557 RVLGVLAMSRAIGDRYLKPSIIPDPD 634
>gb|DR165179.1|DR165179 RTPHOS1_3_D12.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_3_D12_A029 3', mRNA sequence
Length = 814
Score = 101 bits (216), Expect(2) = 1e-023
Identities = 44/83 (53%), Positives = 57/83 (68%)
Frame = -3 / -1
Query: 1123 TCGSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGGFIH 944
+CG+T ALI LVVANAGD R V+ R GKA +SRDHKP+ +ER RI GGF+
Sbjct: 301 SCGTTVLTALIVGRSLVVANAGDCRAVLCRRGKAVEMSRDHKPDCLSERLRIESLGGFVD 122
Query: 943 MGRVNGSLNLSRAIGDVELKQNK 875
G VNG L+++RA+GD ++K K
Sbjct: 121 DGYVNGYLSVARALGDWDMKLPK 53
Score = 33.1 bits (66), Expect(2) = 1e-023
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3 / -1
Query: 1447 TAFFGVFDGHGGRVVAKF 1394
+AF+GVFDGHGG A F
Sbjct: 511 SAFYGVFDGHGGAEAAIF 458
>gb|DR072833.1|DR072833 RTDK1_28_H07.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_28_H07_A029 5', mRNA sequence
Length = 538
Score = 111 bits (238), Expect = 1e-023
Identities = 41/61 (67%), Positives = 54/61 (88%)
Frame = -3 / +2
Query: 787 ACDGIWDCMSSQQLVDFIHERINTESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQF 608
ACDG+WD MSSQ++V+FI+E I+ E +LSAVCE+VLD+CLAPST G+GCDNMT+I+VQ
Sbjct: 23 ACDGVWDVMSSQEVVNFIYEHIDVEKNLSAVCEKVLDKCLAPSTALGEGCDNMTIIVVQL 202
Query: 607 K 605
+
Sbjct: 203 Q 205
>gb|CF394941.1|CF394941 RTDS2_8_E04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_E04_A021 5', mRNA sequence
Length = 783
Score = 76.2 bits (160), Expect(4) = 2e-023
Identities = 34/55 (61%), Positives = 39/55 (70%)
Frame = -3 / +1
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGG 953
GSTA VA++ Q++VAN GDSR V+SRGGKA S DHKPE A E RI AGG
Sbjct: 304 GSTAVVAVLSPFQIIVANCGDSRAVLSRGGKAIPFSNDHKPERADEMLRIEAAGG 468
Score = 37.3 bits (75), Expect(4) = 2e-023
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3 / +1
Query: 1441 FFGVFDGHGGRVVAKFCAKYLH 1376
FFGV+DGHGG + FC + H
Sbjct: 1 FFGVYDGHGGSQASAFCRERFH 66
Score = 29.9 bits (59), Expect(4) = 2e-023
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = -3 / +1
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPE 860
RV G L +SRAIGD LKQ PE
Sbjct: 493 RVGGFLAMSRAIGDRFLKQYVISEPE 570
Score = 29.0 bits (57), Expect(4) = 2e-023
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3 / +1
Query: 859 KQIVTANPDINVVELCXXXXXXXVACDGIWDCMSS 755
KQ V + P++ E +A DG+WD +S+
Sbjct: 544 KQYVISEPEVTCTERTDEDECLILATDGLWDVLSN 648
>gb|CF388938.1|CF388938 RTDR2_16_D02.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_16_D02_A021 5', mRNA
sequence
Length = 693
Score = 78.0 bits (164), Expect(4) = 1e-021
Identities = 34/57 (59%), Positives = 40/57 (70%)
Frame = -3 / +1
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGGFI 947
GSTA A++ +L+VAN GDSR VI R GKA LSRDHKP ER+RI AGGF+
Sbjct: 277 GSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFV 447
Score = 30.9 bits (61), Expect(4) = 1e-021
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3 / +1
Query: 1438 FGVFDGHGGRVVAKFCAKYLHGQVL 1364
FGVFDGHGG A++ + L ++
Sbjct: 97 FGVFDGHGGARAAEYVKQKLFANLI 171
Score = 30.4 bits (60), Expect(4) = 1e-021
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3 / +1
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDINVVEL 815
RV G L +SRA GD LKQ PE Q A+ ++ + L
Sbjct: 466 RVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLIL 588
Score = 26.7 bits (52), Expect(4) = 1e-021
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3 / +1
Query: 787 ACDGIWDCMSSQQLVDFIHERINTESSLSAVCE 689
A DG+WD +S+Q V I + E + + E
Sbjct: 589 ASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTE 687
>gb|CO364567.1|CO364567 RTK1_16_B03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_16_B03_A029 5', mRNA sequence
Length = 806
Score = 78.0 bits (164), Expect(4) = 2e-021
Identities = 34/57 (59%), Positives = 40/57 (70%)
Frame = -3 / +1
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGGFI 947
GSTA A++ +L+VAN GDSR VI R GKA LSRDHKP ER+RI AGGF+
Sbjct: 328 GSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFV 498
Score = 30.9 bits (61), Expect(4) = 2e-021
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3 / +1
Query: 1438 FGVFDGHGGRVVAKFCAKYLHGQVL 1364
FGVFDGHGG A++ + L ++
Sbjct: 148 FGVFDGHGGARAAEYVKQKLFANLI 222
Score = 30.4 bits (60), Expect(4) = 2e-021
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3 / +1
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDINVVEL 815
RV G L +SRA GD LKQ PE Q A+ ++ + L
Sbjct: 517 RVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLIL 639
Score = 26.7 bits (52), Expect(4) = 2e-021
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3 / +1
Query: 787 ACDGIWDCMSSQQLVDFIHERINTESSLSAVCE 689
A DG+WD +S+Q V I + E + + E
Sbjct: 640 ASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTE 738
>gb|DR056059.1|DR056059 RTCA1_27_G03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_27_G03_A029 5', mRNA sequence
Length = 665
Score = 78.0 bits (164), Expect(4) = 2e-021
Identities = 34/57 (59%), Positives = 40/57 (70%)
Frame = -3 / +1
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGGFI 947
GSTA A++ +L+VAN GDSR VI R GKA LSRDHKP ER+RI AGGF+
Sbjct: 271 GSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFV 441
Score = 30.9 bits (61), Expect(4) = 2e-021
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3 / +1
Query: 1438 FGVFDGHGGRVVAKFCAKYLHGQVL 1364
FGVFDGHGG A++ + L ++
Sbjct: 91 FGVFDGHGGARAAEYVKQKLFANLI 165
Score = 29.9 bits (59), Expect(4) = 2e-021
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3 / +1
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDINVVEL 815
RV G L +SRA GD LKQ PE Q A+ ++ + L
Sbjct: 460 RVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADXNVEFLIL 582
Score = 25.8 bits (50), Expect(4) = 2e-021
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3 / +1
Query: 787 ACDGIWDCMSSQQLVDFIHERINTE 713
A DG+WD +S+Q V I + E
Sbjct: 583 ASDGLWDVVSNQDAVAMIQSTEDPE 657
>gb|DR181411.1|DR181411 RTMNUT1_38_F04.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_38_F04_A029 5', mRNA sequence
Length = 744
Score = 77.6 bits (163), Expect(3) = 3e-021
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = -3 / +2
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGG 953
G+TA VA++ ++Q+VVAN GDSR ++SRGGK LS+DHKP+ E ERI AGG
Sbjct: 401 GTTAVVAIVGSSQIVVANCGDSRAILSRGGKPVVLSQDHKPDRPDEMERIEAAGG 565
Score = 40.9 bits (83), Expect(3) = 3e-021
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3 / +2
Query: 1456 DSETAFFGVFDGHGGRVVAKFCAKYLH 1376
D FFGV+DGHGG A FC + LH
Sbjct: 122 DQTLHFFGVYDGHGGSQAALFCKERLH 202
Score = 27.6 bits (54), Expect(3) = 3e-021
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3 / +2
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPEKQI 851
RV G L +SRAIGD LK PE I
Sbjct: 590 RVLGVLAMSRAIGDKYLKPYVIAKPEVTI 676
>gb|DR160875.1|DR160875 RTFE1_8_C02.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_8_C02_A029 5', mRNA sequence
Length = 875
Score = 77.6 bits (163), Expect(3) = 3e-021
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = -3 / +3
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGG 953
G+TA VA++ ++Q+VVAN GDSR ++SRGGK LS+DHKP+ E ERI AGG
Sbjct: 420 GTTAVVAIVGSSQIVVANCGDSRAILSRGGKPVVLSQDHKPDRPDEMERIEAAGG 584
Score = 40.9 bits (83), Expect(3) = 3e-021
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3 / +3
Query: 1456 DSETAFFGVFDGHGGRVVAKFCAKYLH 1376
D FFGV+DGHGG A FC + LH
Sbjct: 141 DQTLHFFGVYDGHGGSQAALFCKERLH 221
Score = 28.1 bits (55), Expect(3) = 3e-021
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = -3 / +3
Query: 859 KQIVTANPDINVVELCXXXXXXXVACDGIWDCMSSQQLVDFIHERINTESSLSAVCERVL 680
K V A P++ + +A DG+WD +S++ + + ++ S S +
Sbjct: 660 KPYVIAKPEVTINARSNEDEFLILASDGLWDVLSNEVVCEVARRCLSGRSHRSCSGLQAD 839
Query: 679 DRCLAPSTIA 650
R P+ IA
Sbjct: 840 GRDDTPAAIA 869
>gb|CO161876.1|CO161876 FLD1_31_F03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_31_F03_A029 5', mRNA sequence
Length = 872
Score = 55.1 bits (114), Expect(4) = 4e-021
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = -3 / +3
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGGFIHM 941
G+ ALI N LVV+NAGD R VISR G + L+ DH+ ER+RI G + +
Sbjct: 504 GTACVTALIINGNLVVSNAGDCRAVISRDGASEALTCDHRAGREDERQRIENLSGIVDL 680
Score = 41.8 bits (85), Expect(4) = 4e-021
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -3 / +3
Query: 1453 SETAFFGVFDGHGGRVVAKFCAK 1385
S+ AFFGVFDGHGGR A F A+
Sbjct: 306 SQQAFFGVFDGHGGRNAAAFAAE 374
Score = 39.6 bits (80), Expect(4) = 4e-021
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -3 / +3
Query: 859 KQIVTANPDINVVELCXXXXXXXVACDGIWDCMSSQQLVD 740
K+ +TA PD +E+ +A DG+WD +S+Q+ VD
Sbjct: 747 KEWITAEPDTRKIEITSECEFLILASDGLWDKVSNQEAVD 866
Score = 28.6 bits (56), Expect(4) = 4e-021
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3 / +3
Query: 937 RVNGSLNLSRAIGDVELKQ 881
RV GSL ++RAIGD +K+
Sbjct: 696 RVQGSLAITRAIGDSHMKE 752
>gb|CR354690.1|CR354690 CR354690 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 124H09, mRNA sequence
Length = 759
Score = 103 bits (219), Expect = 4e-021
Identities = 38/57 (66%), Positives = 50/57 (87%)
Frame = -3 / -3
Query: 775 IWDCMSSQQLVDFIHERINTESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQFK 605
+WD MSSQ++V+FIHE I+ E +LSAVCE+VLD+CLAPST G+GCDNMT+I+VQ +
Sbjct: 757 VWDVMSSQEVVNFIHEHIDVEKNLSAVCEKVLDKCLAPSTALGEGCDNMTIIVVQLQ 587
>gb|DT626747.1|DT626747 EST1159823 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAQ81 5' end, mRNA sequence
Length = 878
Score = 77.6 bits (163), Expect(3) = 4e-021
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = -3 / +2
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGG 953
G+TA VA++ ++Q+VVAN GDSR ++SRGGK LS+DHKP+ E ERI AGG
Sbjct: 365 GTTAVVAIVGSSQIVVANCGDSRAILSRGGKPVVLSQDHKPDRPDEMERIEAAGG 529
Score = 40.9 bits (83), Expect(3) = 4e-021
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3 / +2
Query: 1456 DSETAFFGVFDGHGGRVVAKFCAKYLH 1376
D FFGV+DGHGG A FC + LH
Sbjct: 86 DQTLHFFGVYDGHGGSQAALFCKERLH 166
Score = 27.6 bits (54), Expect(3) = 4e-021
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3 / +2
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPEKQI 851
RV G L +SRAIGD LK PE I
Sbjct: 554 RVLGVLAMSRAIGDKYLKPYVIAKPEVTI 640
>gb|DN459677.1|DN459677 EST955476 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIHP81 5' end, mRNA sequence
Length = 959
Score = 77.6 bits (163), Expect(3) = 5e-021
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = -3 / +3
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGG 953
G+TA VA++ ++Q+VVAN GDSR ++SRGGK LS+DHKP+ E ERI AGG
Sbjct: 366 GTTAVVAIVGSSQIVVANCGDSRAILSRGGKPVVLSQDHKPDRPDEMERIEAAGG 530
Score = 40.9 bits (83), Expect(3) = 5e-021
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3 / +3
Query: 1456 DSETAFFGVFDGHGGRVVAKFCAKYLH 1376
D FFGV+DGHGG A FC + LH
Sbjct: 87 DQTLHFFGVYDGHGGSQAALFCKERLH 167
Score = 27.6 bits (54), Expect(3) = 5e-021
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3 / +3
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPEKQI 851
RV G L +SRAIGD LK PE I
Sbjct: 555 RVLGVLAMSRAIGDKYLKPYVIAKPEVTI 641
>gb|AL750997.1|AL750997 AL750997 RS Pinus pinaster cDNA clone RS02H08 similar to PHOSPHATASE
2C, mRNA sequence
Length = 625
Score = 69.8 bits (146), Expect(4) = 8e-021
Identities = 31/55 (56%), Positives = 37/55 (67%)
Frame = -3 / +2
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGG 953
GSTA A++ L VAN GDSR V+S+ G+A LS DHKP ERERI +AGG
Sbjct: 305 GSTASTAVLVGHNLYVANVGDSRAVMSKAGEAIPLSEDHKPNRVDERERIEQAGG 469
Score = 35.4 bits (71), Expect(4) = 8e-021
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3 / +2
Query: 1441 FFGVFDGHGGRVVAKFCAKYLHGQVLKSEAYST 1343
FFGVFDGHGG A++ ++L + + T
Sbjct: 122 FFGVFDGHGGSRAAQYLKQHLFDNLASHPKFMT 220
Score = 29.9 bits (59), Expect(4) = 8e-021
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3 / +2
Query: 1543 ENDRLKLGLSSMQGWRATMEDAHSA 1469
E+ R G +S QG RATMED + A
Sbjct: 14 EDKRCSYGYASCQGRRATMEDFYDA 88
Score = 27.2 bits (53), Expect(4) = 8e-021
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3 / +2
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDINVV 821
RV G L +SRA G+ LKQ PE Q + D ++
Sbjct: 494 RVGGVLAVSRAFGNRLLKQYVVAEPEIQEAIIDDDXELL 610
>gb|CF396191.1|CF396191 RTDS2_15_B07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_15_B07_A021 5', mRNA sequence
Length = 753
Score = 76.2 bits (160), Expect(3) = 8e-021
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = -3 / +2
Query: 1117 GSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRDHKPELAAERERIMKAGG 953
G+TA VA++ ++Q+VVAN GDSR ++SRGG+ LS+DHKP+ E ERI AGG
Sbjct: 434 GTTAVVAIVGSSQIVVANCGDSRAILSRGGRPVVLSQDHKPDRPDEMERIEAAGG 598
Score = 40.9 bits (83), Expect(3) = 8e-021
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3 / +2
Query: 1456 DSETAFFGVFDGHGGRVVAKFCAKYLH 1376
D FFGV+DGHGG A FC + LH
Sbjct: 155 DQTLHFFGVYDGHGGSQAALFCKERLH 235
Score = 27.6 bits (54), Expect(3) = 8e-021
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3 / +2
Query: 937 RVNGSLNLSRAIGDVELKQNKFLPPEKQI 851
RV G L +SRAIGD LK PE I
Sbjct: 623 RVLGVLAMSRAIGDKYLKPYVIAKPEVTI 709
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 978,957,311
Number of Sequences: 355925
Number of extensions: 16116932
Number of successful extensions: 73548
Number of sequences better than 1.0e-020: 44
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 25432370010
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)