TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2655972.2.1
         (666 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF396446.1|CF396446  RTDS2_22_H09.b1_A021 Drought-stresse...   204   5e-052

>gb|CF396446.1|CF396446 RTDS2_22_H09.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
           taeda cDNA clone RTDS2_22_H09_A021 3', mRNA sequence
          Length = 638

 Score =  204 bits (440), Expect = 5e-052
 Identities = 78/127 (61%), Positives = 101/127 (79%)
 Frame = +2 / +2

                                                                       
Query: 32  SPVLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKE 211
           +P+LFFFGCRN+  DFLYKDFW +H ++  VLS ++GGGFFVAFSRDQPQKVYVQ KI+E
Sbjct: 92  APILFFFGCRNETKDFLYKDFWFSHTKNCKVLSEQKGGGFFVAFSRDQPQKVYVQHKIQE 271

                                                                       
Query: 212 QSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQADASKWLRDLERAGRL 391
           +  ++W  L S A +Y+AGS+TKMPADV + LEEVI +EGG  +  AS+WL+ LE+ GR 
Sbjct: 272 EGIKVWKFLKSGAWVYVAGSATKMPADVMSTLEEVISREGGFSKESASRWLKQLEKIGRY 451

                  
Query: 392 NIETWS* 412
           ++E WS*
Sbjct: 452 HVEAWS* 472




 Score =  145 bits (311), Expect = 3e-034
 Identities = 71/126 (56%), Positives = 76/126 (60%)
 Frame = -1 / -3

                                                                       
Query: 411 YDHVSMLSLPALSRSLSHFEASACLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNK 232
           YD  S   LP  S   SH EA +   PPSL +TSS   +TSAGIFV EPA    A D   
Sbjct: 471 YDQAST*YLPIFSNCFSHLEADSFEKPPSLDMTSSRVDITSAGIFVAEPATYTQAPDFKN 292

                                                                       
Query: 231 FHSLELCSFILGCT*TFCG*SREKATKKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQP 52
           FH+L   S IL CT*TFCG*S EKATK PPP   DNT       +QKSLYRKS   FLQP
Sbjct: 291 FHTLMPSSCILCCT*TFCG*SLEKATKNPPPFCSDNTLQFFVCENQKSLYRKSLVSFLQP 112

                 
Query: 51  KKNRTG 34
           KK R G
Sbjct: 111 KKKRIG 94



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 380,558,227
Number of Sequences: 355925
Number of extensions: 5722982
Number of successful extensions: 41655
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9112082005
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)