TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647492.2.1
(1179 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR052739.1|DR052739 RTCA1_6_C05.g1_A029 Roots minus calc... 324 1e-092
gb|DR689906.1|DR689906 EST1079992 Normalized pine embryo li... 323 1e-087
gb|DR743864.1|DR743864 RTCU1_18_D03.g1_A029 Roots plus adde... 177 1e-080
gb|DR693988.1|DR693988 EST1084078 Normalized pine embryo li... 193 6e-076
gb|DR012391.1|DR012391 HEAT1_12_A10.g1_A029 Root at 37 C fo... 281 1e-075
gb|DR687878.1|DR687878 EST1077961 Normalized pine embryo li... 194 2e-075
gb|CX653326.1|CX653326 COLD1_64_H02.g1_A029 Root cold Pinus... 156 2e-074
gb|DT634457.1|DT634457 EST1149388 Normalized pine embryo li... 194 1e-073
gb|DR693406.1|DR693406 EST1083494 Normalized pine embryo li... 144 6e-071
gb|DR101181.1|DR101181 STRR1_71_C12.b1_A033 Stem Response R... 241 7e-068
gb|DR052665.1|DR052665 RTCA1_6_C05.b1_A029 Roots minus calc... 255 4e-067
gb|BX784252.1|BX784252 BX784252 Pinus pinaster differenciat... 221 2e-066
gb|DR101249.1|DR101249 STRR1_71_C12.g1_A033 Stem Response R... 200 2e-055
gb|DR686273.1|DR686273 EST1076351 Normalized pine embryo li... 201 2e-052
gb|DR689094.1|DR689094 EST1079180 Normalized pine embryo li... 181 1e-051
gb|BX679133.1|BX679133 BX679133 RS Pinus pinaster cDNA clon... 175 1e-051
gb|CF473056.1|CF473056 RTDS1_1_C08.g1_A015 Drought-stressed... 176 3e-048
gb|CX650550.1|CX650550 COLD1_46_A11.g1_A029 Root cold Pinus... 136 6e-047
gb|DR092456.1|DR092456 STRR1_1_B05.g1_A033 Stem Response Re... 134 9e-045
gb|BF186258.1|BF186258 NXCI_135_B12_F NXCI (Nsf Xylem Compr... 171 9e-044
gb|CF475746.1|CF475746 RTWW2_15_F08.b1_A021 Well-watered lo... 140 2e-041
gb|CR394425.1|CR394425 CR394425 RN Pinus pinaster cDNA clon... 155 1e-038
gb|BX249651.1|BX249651 BX249651 Pinus pinaster differenciat... 159 3e-038
gb|CO365000.1|CO365000 RTK1_23_C01.b1_A029 Roots minus pota... 98 4e-036
gb|BF610251.1|BF610251 NXSI_057_A04_F NXSI (Nsf Xylem Side ... 133 2e-035
gb|DT631683.1|DT631683 EST1146614 Normalized pine embryo li... 147 2e-034
gb|BQ696996.1|BQ696996 NXPV_047_H12_F NXPV (Nsf Xylem Plani... 132 2e-032
gb|BI398038.1|BI398038 NXPV_113_G02_F NXPV (Nsf Xylem Plani... 132 3e-032
gb|CX713880.1|CX713880 RTPQ1_14_H06.b1_A032 Roots treated w... 139 3e-032
gb|BG673788.1|BG673788 NXPV_075_A11_F NXPV (Nsf Xylem Plani... 132 1e-031
gb|DR119315.1|DR119315 RTMG1_22_B06.g1_A029 Roots minus mag... 125 6e-030
gb|DR688373.1|DR688373 EST1078457 Normalized pine embryo li... 106 9e-026
gb|DT634835.1|DT634835 EST1149766 Normalized pine embryo li... 106 9e-026
gb|AI812622.1|AI812622 17B4 Pine Lambda Zap Xylem library P... 98 3e-025
gb|CX647415.1|CX647415 COLD1_16_E06.b1_A029 Root cold Pinus... 103 6e-025
gb|AA739942.1|AA739942 707 PtIFG2 Pinus taeda cDNA clone 91... 69 6e-024
gb|CO365080.1|CO365080 RTK1_23_C01.g1_A029 Roots minus pota... 102 4e-021
>gb|DR052739.1|DR052739 RTCA1_6_C05.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_6_C05_A029 5', mRNA sequence
Length = 895
Score = 324 bits (701), Expect(2) = 1e-092
Identities = 124/199 (62%), Positives = 157/199 (78%)
Frame = -1 / -3
Query: 999 WNIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDE 820
WN+HPVYCSNVV+R +TI+AP DSPNTDGIDPDSSSN+CIEDCY+S GDD IAIKSGWDE
Sbjct: 893 WNVHPVYCSNVVVRGLTIIAPRDSPNTDGIDPDSSSNVCIEDCYVSNGDDGIAIKSGWDE 714
Query: 819 YGIAYGRPSSGITVRRITGSSPFAGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTG 640
YGI++ RPSS I VRRIT S+PF+G A+GSETSGG+ ++L E+++ ++S GI VKTN G
Sbjct: 713 YGISFNRPSSNIIVRRITISTPFSGIAIGSETSGGIRDILVENISIYSSTVGIRVKTNVG 534
Query: 639 RGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREA 460
RGG IRNIT S + LDNV G++ G+ G+HPD YN ALP+V + V NV G +++ A
Sbjct: 533 RGGIIRNITFSHIYLDNVGTGIKFSGNTGDHPDARYNPMALPVVGDIAVLNVVGSSIKTA 354
Query: 459 GLIKGIPNSAFSRICLSNV 403
G + G+ S FS ICL+N+
Sbjct: 353 GSLVGLQRSPFSNICLANI 297
Score = 160 bits (343), Expect = 2e-038
Identities = 86/141 (60%), Positives = 91/141 (64%)
Frame = +2 / +1
Query: 578 PYRTLSSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTAKPANG 757
P TLS E V+ M PPLP LVLT IP EL S R PPDVSLP A P G
Sbjct: 472 PVPTLSRYMWENVILRMIPPLPTLVLTRIPTVEL*MLIFSTRMSRIPPDVSLPMAIPEKG 651
Query: 758 EEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESC 937
E VI RT++ ELGR IPYSS PLLMA+ SSP+ *QSSMQ LESGSIPSVLGES
Sbjct: 652 VEMVILRTIMLELGRLKDIPYSSHPLLMAIPSSPLLT*QSSMQTFELESGSIPSVLGESR 831
Query: 938 GARIVTFLITTLLQ*TGWMFQ 1000
GA IV TTLLQ*TG FQ
Sbjct: 832 GAIIVNPRTTTLLQ*TGCTFQ 894
Score = 37.3 bits (75), Expect(2) = 1e-092
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / -3
Query: 393 GGAPVRPWKCEAVSGGALDVQPSPCTELTS 304
GG+ W C+ V G ++ V PSPC +L S
Sbjct: 278 GGSTGSSWDCKDVEGSSIGVTPSPCQQLQS 189
>gb|DR689906.1|DR689906 EST1079992 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACO80 3' end, mRNA sequence
Length = 676
Score = 323 bits (700), Expect = 1e-087
Identities = 126/201 (62%), Positives = 156/201 (77%)
Frame = -1 / +1
Query: 1173 GLQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWN 994
GL+DVV G WW+MW+ L YTR L+ELM+S DII+SN+V +SPFWN
Sbjct: 70 GLKDVVITGQNGTIDGQGEVWWNMWRDGTLKYTRGGLVELMNSKDIIISNLVLLNSPFWN 249
Query: 993 IHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYG 814
+HPVYCSNVV+R +TI+AP DSPNTDGIDPDSSSN+CIEDCY+S GDD IAIKSGWDEYG
Sbjct: 250 VHPVYCSNVVVRGLTIIAPRDSPNTDGIDPDSSSNVCIEDCYVSNGDDGIAIKSGWDEYG 429
Query: 813 IAYGRPSSGITVRRITGSSPFAGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRG 634
I++ RPSS I VRRIT S+PF+G A+GSETSGG+ ++L E+++ ++S GI VK N GRG
Sbjct: 430 ISFNRPSSNIIVRRITISTPFSGIAIGSETSGGIRDILVENISIYSSTVGIRVKANVGRG 609
Query: 633 GFIRNITVSDVTLDNVRYGLR 571
G IRNIT S + LDNV G++
Sbjct: 610 GIIRNITFSHIYLDNVGTGIK 672
Score = 208 bits (449), Expect = 6e-053
Identities = 113/199 (56%), Positives = 122/199 (61%)
Frame = +2 / -3
Query: 578 PYRTLSSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTAKPANG 757
P TLS E V+ M PPLP L LT IP EL S R PPDVSLP A P G
Sbjct: 665 PVPTLSRYMWENVILRMIPPLPTLALTRIPTVEL*MLIFSTRMSRIPPDVSLPMAIPEKG 486
Query: 758 EEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESC 937
E VI RT++ ELGR IPYSS PLLMA+ SSP+ *QSSMQ LESGSIPSVLGES
Sbjct: 485 VEMVILRTIMLELGRLKDIPYSSHPLLMAIPSSPLLT*QSSMQTFELESGSIPSVLGESR 306
Query: 938 GARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHHA 1117
GA IV TTLLQ*TG FQ GE +T + ++S E ISS R LV HI H
Sbjct: 305 GAIIVNPRTTTLLQ*TGCTFQKGEFSRTRFDIIMSFEFISSTRPPLVYFKVPSLHIFHQT 126
Query: 1118 LP*PPIVPFSPVMTTS*SP 1174
P P IVPF PVMTTS SP
Sbjct: 125 SPWPSIVPFCPVMTTSFSP 69
Score = 133 bits (285), Expect = 2e-030
Identities = 68/194 (35%), Positives = 106/194 (54%)
Frame = +1 / -2
Query: 589 VIQRHIRDSDVPDEAAPACVGLDMDPKP*VEEVQVFCKDVLHAT*CLASDREASKRGGAC 768
++Q ++ D+ D+ A + VGLD D + +F ++V + LA+D + +R
Sbjct: 654 IVQVYVGKCDIADDPASSYVGLDSDSDCRAVDADIFYQNVSDSAGRLAADGYS*ERR*NG 475
Query: 769 DPPHGDSRTGAAIGDSILIPATLDGDGIVTSRNVAILDADVAAGIWINSIRVGGVMWS*D 948
PP + S+LIP TLDG +VT ++A+ DAD+ AGIWI+S+ V + S +
Sbjct: 474 YPPDNNVGAWTVERYSVLIPPTLDGYPVVTVAHIAVFDADIRAGIWIDSVSVRRIPRSYN 295
Query: 949 SHVSDHNIAAINRMDVPEWRILKDDIGDNDIRRAHQLKKVRPCVEQXXXLPHIPPRAALT 1128
DHN+AA++ M +PE RI ++ I ++ HQL V Q PHIPP L
Sbjct: 294 RQSPDHNVAAVDGMYIPERRIQQNKIRYYNVF*VHQLN*TTSRVFQGAISPHIPPNFTLA 115
Query: 1129 TNSSILACDDNILK 1170
NS+IL C+D+I +
Sbjct: 114 INSAILPCNDDIFQ 73
Score = 111 bits (236), Expect = 1e-023
Identities = 68/183 (37%), Positives = 92/183 (50%)
Frame = -3 / +3
Query: 1162 CCHHRREWNYWWLRQRVVGYVEXXXXALHKASPS*ADELF*YHCLQCRLSGFAILEHPSC 983
C H+R +W+Y W +V YVE +H+ S*ADEL ++ ++ + FA LE S
Sbjct: 81 CRHYRAKWHY*WPG*SLVEYVERWHLEIHERWSS*ADELKRHYNIESCSAEFAFLECTSR 260
Query: 982 LLQQCCDQKRDYPSST*LPQHGWN*SRFQQQHLHRGLLHFDW*RFHRHQEWLG*VWNRLW 803
LLQQ C D SS H N SRFQ + LHR LL *R HQEW+G*V N
Sbjct: 261 LLQQRCGPGIDDYSSAGFA*H*RNRSRFQLECLHRRLLCEQR*RRDSHQEWVG*VRNIFQ 440
Query: 802 PPQFWNHRAADHRLLPVCWLRGRKRDIRWRGERPCRTLELLQLRVWDPCQDQHRQGRLHQ 623
P + ++ D+ R+RD+R R + LQL +P Q Q R+ R H
Sbjct: 441 PSKLQHYCPEDNHFNAFLRNSHRQRDVRRNPRHSGRKYQHLQLDSRNPSQGQRRKRRDHP 620
Query: 622 EHH 614
++H
Sbjct: 621 QYH 629
>gb|DR743864.1|DR743864 RTCU1_18_D03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_D03_A029 5', mRNA sequence
Length = 816
Score = 177 bits (380), Expect(3) = 1e-080
Identities = 68/103 (66%), Positives = 85/103 (82%)
Frame = -1 / +3
Query: 1062 LELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNIC 883
+ELM S+DII+SN+ F +SP WN+HPVY SN++I+ VTILAP DSPNTDGIDPDS S +
Sbjct: 6 VELMYSTDIIISNLTFLNSPAWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVR 185
Query: 882 IEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRITGSSP 754
IEDCY+ +GDD +AIKSGWDEYGI++G PS I +RR+ G SP
Sbjct: 186 IEDCYVVSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISP 314
Score = 136 bits (291), Expect(3) = 1e-080
Identities = 53/124 (42%), Positives = 83/124 (66%)
Frame = -1 / +3
Query: 741 AVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVG 562
A+GSE SGG+++V AE ++ NS GI +KT+ GRGGF+R+I V+ +T++N+++ + G
Sbjct: 330 ALGSEMSGGIQDVRAEDIHAINSETGIRIKTSAGRGGFVRDIFVNRMTMENMKWAFTMTG 509
Query: 561 DVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFTGGAP 382
G+HPD+ YN ALP+V+ ++ N+ NV AG ++GI + F ICLSNV T A
Sbjct: 510 SYGSHPDNKYNPDALPVVERISYSNIVATNVSVAGKLEGIAKAPFKDICLSNVTITMAAK 689
Query: 381 VRPW 370
+ +
Sbjct: 690 AKKY 701
Score = 101 bits (215), Expect(3) = 2e-032
Identities = 55/102 (53%), Positives = 63/102 (61%)
Frame = +2 / -3
Query: 755 GEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGES 934
G+ P RR I LG P IPYSSQPL +A SSP *QSS++ ESGSIPSV GES
Sbjct: 313 GDMPTRRRMTIC*LGMPKEIPYSSQPLFIATISSPETT*QSSIRTYEQESGSIPSVFGES 134
Query: 935 CGARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISS 1060
GARIVT+ + LL TG F GE K E +IS E I+S
Sbjct: 133 SGARIVTY*MRILLLYTGCKFHAGEFRKVKFEIIISVEYINS 8
Score = 46.4 bits (95), Expect(3) = 2e-032
Identities = 24/50 (48%), Positives = 28/50 (56%)
Frame = +2 / -3
Query: 593 SSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTA 742
S V T + L PPLP V IP EL + SART PPD+SLP+A
Sbjct: 478 SIVIRLTNISLTNPPLPADVFILIPVSELMAWISSARTSCIPPDISLPSA 329
Score = 30.4 bits (60), Expect(3) = 2e-032
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2 / -3
Query: 386 APPVNLTFDRQIREKAELGMPLISPASLTF 475
A V +TF+RQ+ L MP PA+LTF
Sbjct: 685 AAMVMVTFERQMSLNGALAMPSSFPATLTF 596
Score = 27.2 bits (53), Expect(3) = 1e-080
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1 / +3
Query: 375 PWKCEAVSGGALDVQPSPCTEL 310
PW C + G + V P PC+ L
Sbjct: 702 PWNCTYIHGLSNTVYPQPCSLL 767
>gb|DR693988.1|DR693988 EST1084078 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE671 3' end, mRNA sequence
Length = 760
Score = 193 bits (416), Expect(2) = 6e-076
Identities = 78/137 (56%), Positives = 98/137 (71%)
Frame = -1 / +1
Query: 1164 DVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHP 985
DVV G+ WW + L TR +L+ELM S+DII+SN+ F +SP WN+HP
Sbjct: 4 DVVITGDNGTIDGQGAIWWQKFHQKKLKNTRGYLVELMYSTDIIISNLTFLNSPAWNLHP 183
Query: 984 VYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAY 805
VY SN++I+ VTILAP DSPNTDGIDPDS S + IEDCY+ +GDD +AIKSGWDEYGI++
Sbjct: 184 VYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISF 363
Query: 804 GRPSSGITVRRITGSSP 754
G PS I +RR+ G SP
Sbjct: 364 GMPSQHIVIRRLVGISP 414
Score = 125 bits (267), Expect(2) = 8e-036
Identities = 69/137 (50%), Positives = 81/137 (59%)
Frame = +2 / -3
Query: 755 GEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGES 934
G+ P RR I LG P IPYSSQPL +A SSP *QSS++ ESGSIPSV GES
Sbjct: 413 GDMPTRRRMTIC*LGMPKEIPYSSQPLFIATISSPETT*QSSIRTYEQESGSIPSVFGES 234
Query: 935 CGARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHH 1114
GARIVT+ + LL TG F GE K E +IS E I+S +* V ++ H
Sbjct: 233 SGARIVTY*MRILLLYTGCKFHAGEFRKVKFEIIISVEYINSTK*PRVFFNFFWWNFCHQ 54
Query: 1115 ALP*PPIVPFSPVMTTS 1165
P P IVP SPV+TTS
Sbjct: 53 IAPCPSIVPLSPVITTS 3
Score = 112 bits (239), Expect(2) = 6e-076
Identities = 42/95 (44%), Positives = 67/95 (70%)
Frame = -1 / +1
Query: 741 AVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVG 562
A+GSE SGG+++V AE ++ NS GI +KT+ GRGGF+R+I V+ +T++N+++ + G
Sbjct: 430 ALGSEMSGGIQDVRAEDIHAINSETGIRIKTSAGRGGFVRDIFVNRMTMENMKWAFTMTG 609
Query: 561 DVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAG 457
G+HPD+ YN ALP+V+ ++ N+ NV AG
Sbjct: 610 SYGSHPDNKYNPDALPVVERISYSNIVATNVSVAG 714
Score = 46.4 bits (95), Expect(2) = 8e-036
Identities = 24/50 (48%), Positives = 28/50 (56%)
Frame = +2 / -3
Query: 593 SSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTA 742
S V T + L PPLP V IP EL + SART PPD+SLP+A
Sbjct: 578 SIVIRLTNISLTNPPLPADVFILIPVSELMAWISSARTSCIPPDISLPSA 429
>gb|DR012391.1|DR012391 HEAT1_12_A10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_12_A10_A029 5', mRNA sequence
Length = 543
Score = 281 bits (608), Expect(2) = 1e-075
Identities = 110/173 (63%), Positives = 135/173 (78%)
Frame = -1 / +3
Query: 1002 FWNIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWD 823
F HPVYCSNVV+R +TI+AP DSPNTD IDPDSSSN+CIEDCY+S GDD IAIKSGWD
Sbjct: 21 FLECHPVYCSNVVVRGLTIIAPRDSPNTDAIDPDSSSNVCIEDCYVSNGDDGIAIKSGWD 200
Query: 822 EYGIAYGRPSSGITVRRITGSSPFAGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNT 643
EYGI++ RPSS I VRRIT S+PF+G A+GSETSGG+ ++L E+++ ++S GI VKTN
Sbjct: 201 EYGISFNRPSSNIIVRRITISTPFSGIAIGSETSGGIRDILVENISIYSSTVGIRVKTNV 380
Query: 642 GRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDALTVKNV 484
GRGG IRNIT S + LDNV G++ + G+HPD YN ALP+V + V NV
Sbjct: 381 GRGGIIRNITFSHIYLDNVGTGIKFSSNTGDHPDARYNPMALPVVGDIAVLNV 539
Score = 152 bits (327), Expect = 4e-036
Identities = 83/137 (60%), Positives = 88/137 (64%)
Frame = +2 / -3
Query: 578 PYRTLSSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTAKPANG 757
P TLS E V+ M PPLP LVLT IP EL S R PPDVSLP A P G
Sbjct: 445 PVPTLSRYMWENVILRMIPPLPTLVLTRIPTVEL*MLIFSTRMSRIPPDVSLPMAIPEKG 266
Query: 758 EEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESC 937
E VI RT++ ELGR IPYSS PLLMA+ SSP+ *QSSMQ LESGSI SVLGES
Sbjct: 265 VEMVILRTIMLELGRLKDIPYSSHPLLMAIPSSPLLT*QSSMQTFELESGSIASVLGESR 86
Query: 938 GARIVTFLITTLLQ*TG 988
GA IV TTLLQ*TG
Sbjct: 85 GAIIVNPRTTTLLQ*TG 35
Score = 23.5 bits (45), Expect(2) = 1e-075
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1 / +1
Query: 1023 VVFQDSPFWNIHP 985
+V +SPFWN+ P
Sbjct: 1 LVLLNSPFWNVIP 39
>gb|DR687878.1|DR687878 EST1077961 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABX64 3' end, mRNA sequence
Length = 813
Score = 194 bits (419), Expect(2) = 2e-075
Identities = 79/139 (56%), Positives = 99/139 (71%)
Frame = -1 / +3
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DVV G+ WW + L TR +L+ELM S+DII+SN+ F +SP WN+
Sbjct: 105 LTDVVITGDNGTIDGQGAIWWQKFHQKKLKNTRGYLVELMYSTDIIISNLTFLNSPAWNL 284
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGI 811
HPVY SN++I+ VTILAP DSPNTDGIDPDS S + IEDCY+ +GDD +AIKSGWDEYGI
Sbjct: 285 HPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGI 464
Query: 810 AYGRPSSGITVRRITGSSP 754
++G PS I +RR+ G SP
Sbjct: 465 SFGMPSQHIVIRRLVGISP 521
Score = 125 bits (267), Expect(2) = 8e-036
Identities = 69/137 (50%), Positives = 81/137 (59%)
Frame = +2 / -3
Query: 755 GEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGES 934
G+ P RR I LG P IPYSSQPL +A SSP *QSS++ ESGSIPSV GES
Sbjct: 520 GDMPTRRRMTIC*LGMPKEIPYSSQPLFIATISSPETT*QSSIRTYEQESGSIPSVFGES 341
Query: 935 CGARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHH 1114
GARIVT+ + LL TG F GE K E +IS E I+S +* V ++ H
Sbjct: 340 SGARIVTY*MRILLLYTGCKFHAGEFRKVKFEIIISVEYINSTK*PRVFFNFFWWNFCHQ 161
Query: 1115 ALP*PPIVPFSPVMTTS 1165
P P IVP SPV+TTS
Sbjct: 160 IAPCPSIVPLSPVITTS 110
Score = 109 bits (232), Expect(2) = 2e-075
Identities = 40/91 (43%), Positives = 65/91 (71%)
Frame = -1 / +3
Query: 741 AVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVG 562
A+GSE SGG+++V AE ++ NS GI +KT+ GRGGF+R+I V+ +T++N+++ + G
Sbjct: 537 ALGSEMSGGIQDVRAEDIHAINSETGIRIKTSAGRGGFVRDIFVNRMTMENMKWAFTMTG 716
Query: 561 DVGNHPDDSYNRSALPIVDALTVKNVQGQNV 469
G+HPD+ YN ALP+V+ ++ N+ NV
Sbjct: 717 SYGSHPDNKYNPDALPVVERISYSNIVATNV 809
Score = 46.4 bits (95), Expect(2) = 8e-036
Identities = 24/50 (48%), Positives = 28/50 (56%)
Frame = +2 / -3
Query: 593 SSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTA 742
S V T + L PPLP V IP EL + SART PPD+SLP+A
Sbjct: 685 SIVIRLTNISLTNPPLPADVFILIPVSELMAWISSARTSCIPPDISLPSA 536
>gb|CX653326.1|CX653326 COLD1_64_H02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_H02_A029 5', mRNA sequence
Length = 893
Score = 156 bits (335), Expect(3) = 2e-074
Identities = 59/88 (67%), Positives = 72/88 (81%)
Frame = -1 / +3
Query: 1017 FQDSPFWNIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAI 838
F +SP WN+HPVY SN++I+ VTILAP DSPNTDGIDPDS S + IEDCY+ +GDD +AI
Sbjct: 6 FPNSPAWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAI 185
Query: 837 KSGWDEYGIAYGRPSSGITVRRITGSSP 754
KSGWDEYGI++G PS I +RR+ G SP
Sbjct: 186 KSGWDEYGISFGMPSQHIVIRRLVGISP 269
Score = 136 bits (291), Expect(3) = 2e-074
Identities = 53/124 (42%), Positives = 83/124 (66%)
Frame = -1 / +3
Query: 741 AVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVG 562
A+GSE SGG+++V AE ++ NS GI +KT+ GRGGF+R+I V+ +T++N+++ + G
Sbjct: 285 ALGSEMSGGIQDVRAEDIHAINSETGIRIKTSAGRGGFVRDIFVNRMTMENMKWAFTMTG 464
Query: 561 DVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFTGGAP 382
G+HPD+ YN ALP+V+ ++ N+ NV AG ++GI + F ICLSNV T A
Sbjct: 465 SYGSHPDNKYNPDALPVVERISYSNIVATNVSVAGKLEGIAKAPFKDICLSNVTITMAAK 644
Query: 381 VRPW 370
+ +
Sbjct: 645 AKKY 656
Score = 91.3 bits (193), Expect(3) = 2e-029
Identities = 48/85 (56%), Positives = 54/85 (63%)
Frame = +2 / -2
Query: 755 GEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGES 934
G+ P RR I LG P IPYSSQPL +A SSP *QSS++ ESGSIPSV GES
Sbjct: 268 GDMPTRRRMTIC*LGMPKEIPYSSQPLFIATISSPETT*QSSIRTYEQESGSIPSVFGES 89
Query: 935 CGARIVTFLITTLLQ*TGWMFQNGE 1009
GARIVT+ + LL TG F GE
Sbjct: 88 SGARIVTY*MRILLLYTGCKFHAGE 14
Score = 46.4 bits (95), Expect(3) = 2e-029
Identities = 24/50 (48%), Positives = 28/50 (56%)
Frame = +2 / -2
Query: 593 SSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTA 742
S V T + L PPLP V IP EL + SART PPD+SLP+A
Sbjct: 433 SIVIRLTNISLTNPPLPADVFILIPVSELMAWISSARTSCIPPDISLPSA 284
Score = 30.4 bits (60), Expect(3) = 2e-029
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2 / -2
Query: 386 APPVNLTFDRQIREKAELGMPLISPASLTF 475
A V +TF+RQ+ L MP PA+LTF
Sbjct: 640 AAMVMVTFERQMSLNGALAMPSSFPATLTF 551
Score = 27.2 bits (53), Expect(3) = 2e-074
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1 / +3
Query: 375 PWKCEAVSGGALDVQPSPCTEL 310
PW C + G + V P PC+ L
Sbjct: 657 PWNCTYIHGLSNTVYPQPCSLL 722
>gb|DT634457.1|DT634457 EST1149388 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG619 3' end, mRNA sequence
Length = 849
Score = 194 bits (419), Expect(2) = 1e-073
Identities = 79/139 (56%), Positives = 99/139 (71%)
Frame = -1 / +2
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DVV G+ WW + L TR +L+ELM S+DII+SN+ F +SP WN+
Sbjct: 113 LTDVVITGDNGTIDGQGAIWWQKFHQKKLKNTRGYLVELMYSTDIIISNLTFLNSPAWNL 292
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGI 811
HPVY SN++I+ VTILAP DSPNTDGIDPDS S + IEDCY+ +GDD +AIKSGWDEYGI
Sbjct: 293 HPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGI 472
Query: 810 AYGRPSSGITVRRITGSSP 754
++G PS I +RR+ G SP
Sbjct: 473 SFGMPSQHIVIRRLVGISP 529
Score = 125 bits (267), Expect(2) = 8e-036
Identities = 69/137 (50%), Positives = 81/137 (59%)
Frame = +2 / -1
Query: 755 GEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGES 934
G+ P RR I LG P IPYSSQPL +A SSP *QSS++ ESGSIPSV GES
Sbjct: 528 GDMPTRRRMTIC*LGMPKEIPYSSQPLFIATISSPETT*QSSIRTYEQESGSIPSVFGES 349
Query: 935 CGARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHH 1114
GARIVT+ + LL TG F GE K E +IS E I+S +* V ++ H
Sbjct: 348 SGARIVTY*MRILLLYTGCKFHAGEFRKVKFEIIISVEYINSTK*PRVFFNFFWWNFCHQ 169
Query: 1115 ALP*PPIVPFSPVMTTS 1165
P P IVP SPV+TTS
Sbjct: 168 IAPCPSIVPLSPVITTS 118
Score = 103 bits (219), Expect(2) = 1e-073
Identities = 37/83 (44%), Positives = 61/83 (73%)
Frame = -1 / +2
Query: 741 AVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVG 562
A+GSE SGG+++V AE ++ NS GI +KT+ GRGGF+R+I V+ +T++N+++ + G
Sbjct: 545 ALGSEMSGGIQDVRAEDIHAINSETGIRIKTSAGRGGFVRDIFVNRMTMENMKWAFTMTG 724
Query: 561 DVGNHPDDSYNRSALPIVDALTV 493
G+HPD+ YN ALP+V+ + +
Sbjct: 725 SYGSHPDNKYNPDALPVVERIAI 793
Score = 46.4 bits (95), Expect(2) = 8e-036
Identities = 24/50 (48%), Positives = 28/50 (56%)
Frame = +2 / -1
Query: 593 SSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTA 742
S V T + L PPLP V IP EL + SART PPD+SLP+A
Sbjct: 693 SIVIRLTNISLTNPPLPADVFILIPVSELMAWISSARTSCIPPDISLPSA 544
>gb|DR693406.1|DR693406 EST1083494 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADY73 3' end, mRNA sequence
Length = 843
Score = 144 bits (309), Expect(3) = 6e-071
Identities = 55/81 (67%), Positives = 67/81 (82%)
Frame = -1 / +3
Query: 996 NIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEY 817
N+HPVY SN++I+ VTILAP DSPNTDGIDPDS S + IEDCY+ +GDD +AIKSGWDEY
Sbjct: 3 NLHPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEY 182
Query: 816 GIAYGRPSSGITVRRITGSSP 754
GI++G PS I +RR+ G SP
Sbjct: 183 GISFGMPSQHIAIRRLVGISP 245
Score = 136 bits (291), Expect(3) = 6e-071
Identities = 53/124 (42%), Positives = 83/124 (66%)
Frame = -1 / +3
Query: 741 AVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVG 562
A+GSE SGG+++V AE ++ NS GI +KT+ GRGGF+R+I V+ +T++N+++ + G
Sbjct: 261 ALGSEMSGGIQDVRAEDIHAINSETGIRIKTSAGRGGFVRDIFVNRMTMENMKWAFTMTG 440
Query: 561 DVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFTGGAP 382
G+HPD+ YN ALP+V+ ++ N+ NV AG ++GI + F ICLSNV T A
Sbjct: 441 SYGSHPDNKYNPDALPVVERISYSNIVATNVSVAGKLEGIAKAPFKDICLSNVTITMAAK 620
Query: 381 VRPW 370
+ +
Sbjct: 621 AKKY 632
Score = 87.2 bits (184), Expect(3) = 3e-028
Identities = 46/81 (56%), Positives = 52/81 (64%)
Frame = +2 / -3
Query: 755 GEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGES 934
G+ P RR I LG P IPYSSQPL +A SSP *QSS++ ESGSIPSV GES
Sbjct: 244 GDMPTRRRMAIC*LGMPKEIPYSSQPLFIATISSPETT*QSSIRTYEQESGSIPSVFGES 65
Query: 935 CGARIVTFLITTLLQ*TGWMF 997
GARIVT+ + LL TG F
Sbjct: 64 SGARIVTY*MRILLLYTGCKF 2
Score = 46.4 bits (95), Expect(3) = 3e-028
Identities = 24/50 (48%), Positives = 28/50 (56%)
Frame = +2 / -3
Query: 593 SSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTA 742
S V T + L PPLP V IP EL + SART PPD+SLP+A
Sbjct: 409 SIVIRLTNISLTNPPLPADVFILIPVSELMAWISSARTSCIPPDISLPSA 260
Score = 30.4 bits (60), Expect(3) = 3e-028
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2 / -3
Query: 386 APPVNLTFDRQIREKAELGMPLISPASLTF 475
A V +TF+RQ+ L MP PA+LTF
Sbjct: 616 AAMVMVTFERQMSLNGALAMPSSFPATLTF 527
Score = 27.2 bits (53), Expect(3) = 6e-071
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1 / +3
Query: 375 PWKCEAVSGGALDVQPSPCTEL 310
PW C + G + V P PC+ L
Sbjct: 633 PWNCTYIHGLSNTVYPQPCSLL 698
>gb|DR101181.1|DR101181 STRR1_71_C12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_71_C12_A033 3', mRNA sequence
Length = 761
Score = 241 bits (521), Expect(2) = 7e-068
Identities = 94/164 (57%), Positives = 124/164 (75%)
Frame = -1 / +2
Query: 894 SNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRITGSSPFAGFAVGSETSGG 715
SN+CIEDCY+S GDD IAIKSGWDEYGI++ RPSS I VRRIT S+PF+G A+GSETSGG
Sbjct: 2 SNVCIEDCYVSNGDDGIAIKSGWDEYGISFNRPSSNIIVRRITISTPFSGIAIGSETSGG 181
Query: 714 VENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDS 535
+ ++L E+++ ++S GI VKTN GRGG IRNIT S + LDNV G++ G+ G+HPD
Sbjct: 182 IRDILVENISIYSSTVGIRVKTNVGRGGIIRNITFSHIYLDNVGTGIKFSGNTGDHPDAR 361
Query: 534 YNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNV 403
YN ALP+V + V +V G +++ AG + G+ S FS ICL+N+
Sbjct: 362 YNPMALPVVGDIAVLDVVGSSIKTAGSLVGLQRSPFSNICLANI 493
Score = 111 bits (238), Expect = 7e-024
Identities = 59/103 (57%), Positives = 64/103 (62%)
Frame = +2 / -3
Query: 578 PYRTLSSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTAKPANG 757
P TLS E V+ M PPLP LVLT IP EL S R PPDVSLP A P G
Sbjct: 318 PVPTLSRYMWENVILRMIPPLPTLVLTRIPTVEL*MLIFSTRMSRIPPDVSLPMAIPEKG 139
Query: 758 EEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQ 886
E VI RT++ ELGR IPYSS PLLMA+ SSP+ *QSSMQ
Sbjct: 138 VEMVILRTIMLELGRLKDIPYSSHPLLMAIPSSPLLT*QSSMQ 10
Score = 37.3 bits (75), Expect(2) = 7e-068
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / +2
Query: 393 GGAPVRPWKCEAVSGGALDVQPSPCTELTS 304
GG+ W C+ V G ++ V PSPC +L S
Sbjct: 512 GGSTGSSWDCKDVEGSSIGVTPSPCQQLQS 601
>gb|DR052665.1|DR052665 RTCA1_6_C05.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_6_C05_A029 3', mRNA sequence
Length = 755
Score = 255 bits (552), Expect = 4e-067
Identities = 98/149 (65%), Positives = 118/149 (79%)
Frame = -1 / -1
Query: 1173 GLQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWN 994
GL+DVV G WW+MW+ L YTR L+ELM+S D+I+SN+V +SPFWN
Sbjct: 449 GLKDVVITGQNGTIDGQGEVWWNMWRDGTLKYTRGGLVELMNSKDVIISNLVLLNSPFWN 270
Query: 993 IHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYG 814
+HPVYCSNVV+R +TI+AP DSPNTDGIDPDSSSN+CIEDCY+S GDD IAIKSGWDEYG
Sbjct: 269 VHPVYCSNVVVRGLTIIAPRDSPNTDGIDPDSSSNVCIEDCYVSNGDDGIAIKSGWDEYG 90
Query: 813 IAYGRPSSGITVRRITGSSPFAGFAVGSE 727
I++ RPSS I VRRIT S+PF+G A+GSE
Sbjct: 89 ISFNRPSSNIIVRRITISTPFSGIAIGSE 3
Score = 167 bits (359), Expect = 1e-040
Identities = 90/150 (60%), Positives = 97/150 (64%)
Frame = +2 / +1
Query: 725 VSLPTAKPANGEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLES 904
VSLP A P G E VI RT++ ELGR IPYSS PLLMA+ SSP+ *QSSMQ LES
Sbjct: 1 VSLPMAIPEKGVEMVILRTIMLELGRLKDIPYSSHPLLMAIPSSPLLT*QSSMQTFELES 180
Query: 905 GSIPSVLGESCGARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*S 1084
GSIPSVLGES GA IV TTLLQ*TG FQ GE +T + + S E ISS R LV
Sbjct: 181 GSIPSVLGESRGAIIVNPRTTTLLQ*TGCTFQKGEFSRTRFDIITSFEFISSTRPPLVYF 360
Query: 1085 XXXXFHISHHALP*PPIVPFSPVMTTS*SP 1174
HI H P P IVPF PVMTTS SP
Sbjct: 361 KVPSLHIFHQTSPWPSIVPFCPVMTTSFSP 450
Score = 112 bits (239), Expect = 5e-024
Identities = 51/119 (42%), Positives = 73/119 (61%)
Frame = +1 / +3
Query: 814 SILIPATLDGDGIVTSRNVAILDADVAAGIWINSIRVGGVMWS*DSHVSDHNIAAINRMD 993
S+LIP TLDG +VT ++A+ DAD+ AGIWI+S+ V + S + DHN+AA++ M
Sbjct: 90 SVLIPPTLDGYPVVTVAHIAVFDADIRAGIWIDSVSVRRIPRSYNRQSPDHNVAAVDGMY 269
Query: 994 VPEWRILKDDIGDNDIRRAHQLKKVRPCVEQXXXLPHIPPRAALTTNSSILACDDNILK 1170
+PE RI ++ I ++ HQL V Q PHIPP L NS+IL C+D+I +
Sbjct: 270 IPERRIQQNKIRYYNVF*VHQLN*TTSRVFQGAISPHIPPNFTLAINSAILPCNDDIFQ 446
>gb|BX784252.1|BX784252 BX784252 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 131E02, mRNA sequence
Length = 484
Score = 221 bits (478), Expect(2) = 2e-066
Identities = 81/119 (68%), Positives = 102/119 (85%)
Frame = -1 / +2
Query: 1110 WDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHD 931
WD + L YTRPHL+E++SS+DI++SN+ F +SPFWNIHPVYCSNV I N+TILAP
Sbjct: 2 WDSYHNHTLKYTRPHLIEVISSTDIVISNLTFLNSPFWNIHPVYCSNVHIHNLTILAPSH 181
Query: 930 SPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRITGSSP 754
SPNTDGIDPDSS+++CIEDCY+S GDD I+IKSGWD+YGI++GRPSS I +RR+TG +P
Sbjct: 182 SPNTDGIDPDSSNDVCIEDCYMSIGDDLISIKSGWDQYGISFGRPSSNIIIRRVTGETP 358
Score = 128 bits (275), Expect(2) = 7e-038
Identities = 68/108 (62%), Positives = 75/108 (69%)
Frame = +2 / -2
Query: 755 GEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGES 934
G PV RR +I ELGRP +PY SQPLL+ M SSP+ M*QSSMQ LLESGSIPSVLGE
Sbjct: 357 GVSPVTRRIMILELGRPKDMPY*SQPLLIEMRSSPMLM*QSSMQTSLLESGSIPSVLGE* 178
Query: 935 CGARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV 1078
GARIV + TLLQ TG +FQNGE E IS ELI+S R G V
Sbjct: 177 DGARIVRL*MCTLLQYTGCIFQNGEFKNVRFEMTISVELITSIRWGRV 34
Score = 51.9 bits (107), Expect(2) = 2e-066
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = -1 / +2
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGG 631
AG A GSE SGG+ +V E+L+ +NS GI +KT GRGG
Sbjct: 365 AGLAFGSEMSGGIIDVHVENLHVYNSRLGIRLKTAPGRGG 484
Score = 49.6 bits (102), Expect(2) = 7e-038
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = +2 / -2
Query: 632 PPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTAKPA 751
PPLP V + IPN EL K S T PPD+SLP A+PA
Sbjct: 483 PPLPGAVFSLIPNLELYTCKFSTCTSMMPPDISLPNARPA 364
>gb|DR101249.1|DR101249 STRR1_71_C12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_71_C12_A033 5', mRNA sequence
Length = 581
Score = 200 bits (431), Expect(2) = 2e-055
Identities = 79/145 (54%), Positives = 107/145 (73%)
Frame = -1 / +1
Query: 837 KSGWDEYGIAYGRPSSGITVRRITGSSPFAGFAVGSETSGGVENVLAEHLNFFNSGFGIH 658
KSGWDEYGI++ RPSS I VRRIT S+PF+G A+GSETSGG+ ++L E+++ ++S GI
Sbjct: 1 KSGWDEYGISFNRPSSNIIVRRITISTPFSGIAIGSETSGGIRDILVENISIYSSTVGIR 180
Query: 657 VKTNTGRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDALTVKNVQG 478
VKTN GRGG IRNIT S + LDNV G++ G+ G+HPD YN ALP+V + V +V G
Sbjct: 181 VKTNVGRGGIIRNITFSHIYLDNVGTGIKFSGNTGDHPDARYNPMALPVVGDIAVLDVVG 360
Query: 477 QNVREAGLIKGIPNSAFSRICLSNV 403
+++ AG + G+ S FS ICL+N+
Sbjct: 361 SSIKTAGSLVGLQRSPFSNICLANI 435
Score = 36.8 bits (74), Expect(2) = 2e-055
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / +1
Query: 393 GGAPVRPWKCEAVSGGALDVQPSPCTELTS 304
GG+ W C+ V G ++ V PSPC +L S
Sbjct: 454 GGSTGSSWDCKDVEGSSIGVTPSPCQQLHS 543
>gb|DR686273.1|DR686273 EST1076351 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE26 3' end, mRNA sequence
Length = 442
Score = 201 bits (433), Expect(2) = 2e-052
Identities = 77/101 (76%), Positives = 91/101 (90%)
Frame = -1 / +1
Query: 1086 LLYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHDSPNTDGID 907
L +TRPHL+EL SS+DI+++N+ F +SPFWNIHPVY SNV I+NVTILAP+DSPNTDGID
Sbjct: 136 LNFTRPHLVELRSSTDIVIANLTFLNSPFWNIHPVYSSNVRIQNVTILAPYDSPNTDGID 315
Query: 906 PDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGI 784
PDS +++CIEDCYISTGDD IAIKSGWDEYGIA+GRPS I
Sbjct: 316 PDSCNDVCIEDCYISTGDDPIAIKSGWDEYGIAFGRPSFNI 438
Score = 127 bits (272), Expect(2) = 8e-033
Identities = 65/99 (65%), Positives = 72/99 (72%)
Frame = +2 / -3
Query: 782 VIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESCGARIVTFL 961
++ +LGRP AIPYSSQPL +A+ SSPV M*QSSMQ L ESGSIPSV GES GARIVTF
Sbjct: 440 IMLKLGRPKAIPYSSQPLFIAIGSSPVLM*QSSMQTSLQESGSIPSVFGESYGARIVTFW 261
Query: 962 ITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV 1078
I TLL TG MFQNGE +S EL+SS R*G V
Sbjct: 260 IRTLLLYTG*MFQNGEFRNVKFAITMSVELLSSTR*GRV 144
Score = 96.4 bits (204), Expect(2) = 2e-023
Identities = 43/94 (45%), Positives = 65/94 (69%)
Frame = +1 / -2
Query: 793 TGAAIGDSILIPATLDGDGIVTSRNVAILDADVAAGIWINSIRVGGVMWS*DSHVSDHNI 972
T A ++ILIPATL + ++T +V + AD+ AGIWI+SIR+ V+W + ++ D +I
Sbjct: 429 TRTAKSNTILIPATLYRNWVITGADVTVFYADIIAGIWIDSIRIW*VVWCKNRNILDSHI 250
Query: 973 AAINRMDVPEWRILKDDIGDNDIRRAHQLKKVRP 1074
AAI+ M+VP+W I K I ++++ RA QL KVRP
Sbjct: 249 AAIHWMNVPKW*IQKCQICNHNVSRASQLHKVRP 148
Score = 34.1 bits (68), Expect(2) = 8e-033
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2 / -1
Query: 1106 SHHALP*PPIVPFSPVMTTS 1165
SH P P IVP SPVMTTS
Sbjct: 115 SHQMAPWPSIVPLSPVMTTS 56
Score = 33.6 bits (67), Expect(2) = 2e-023
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1 / -3
Query: 1105 IPPRAALTTNSSILACDDNILK 1170
IPP L NSSI+ C DNI K
Sbjct: 116 IPPNGTLAVNSSIIPCYDNICK 51
Score = 25.8 bits (50), Expect(2) = 2e-052
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3 / +2
Query: 1162 CCHHRREWNY 1133
CCH+R WNY
Sbjct: 59 CCHNRG*WNY 88
>gb|DR689094.1|DR689094 EST1079180 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACE13 3' end, mRNA sequence
Length = 762
Score = 181 bits (390), Expect(2) = 1e-051
Identities = 72/134 (53%), Positives = 91/134 (67%)
Frame = -1 / +1
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
LQDVV G +WW ++ + +TR LL+ M SDI +SN+ ++SPFW +
Sbjct: 217 LQDVVITGYNGTIDGQGQSWWKKFRQKQMTHTRGLLLQFMWCSDIEISNITLRNSPFWTL 396
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGI 811
HP C NV I +TILAP D+PNTDGIDPDS N+ IE+CYIS GDD IAIKSGWD+YGI
Sbjct: 397 HPYDCQNVRISGLTILAPLDAPNTDGIDPDSCQNVTIENCYISVGDDCIAIKSGWDQYGI 576
Query: 810 AYGRPSSGITVRRI 769
AY RPS+ I +R +
Sbjct: 577 AYARPSANILIRNL 618
Score = 82.2 bits (173), Expect(3) = 1e-022
Identities = 48/94 (51%), Positives = 56/94 (59%)
Frame = +2 / -2
Query: 797 GRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESCGARIVTFLITTLL 976
GR AIPY SQPL +AM+SSP M*Q S+ ESGSIPSV G S GA+IV+ LI T
Sbjct: 590 GRAYAIPY*SQPLFIAMQSSPTLM*QFSIVTF*QESGSIPSVFGASSGAKIVSPLIRTF* 411
Query: 977 Q*TGWMFQNGES*KTTLETMISEELISSRR*GLV 1078
Q G QNGE E +S ++ RR LV
Sbjct: 410 QSYG*SVQNGELRSVIFEISMSLHHMNCRRSPLV 309
Score = 43.2 bits (88), Expect(2) = 1e-051
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRG 634
A ++GSE SGGV NV ++++ + S G+ +KT+ G+G
Sbjct: 640 AAVSIGSEMSGGVSNVTVDNVHVWQSRRGMRIKTSPGKG 756
Score = 34.5 bits (69), Expect(3) = 1e-022
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2 / -2
Query: 635 PLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLP 736
P P LVL +P + + S T TPPD+SLP
Sbjct: 755 PFPGLVLILMPRLDCQT*TLSTVTLETPPDISLP 654
Score = 28.1 bits (55), Expect(3) = 1e-022
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2 / -2
Query: 1109 HHALP*PPIVPFSPVMTTS* 1168
H P*P +VP PV+TTS*
Sbjct: 278 HQLCP*PSMVPL*PVITTS* 219
>gb|BX679133.1|BX679133 BX679133 RS Pinus pinaster cDNA clone RS20C4, mRNA sequence
Length = 603
Score = 175 bits (376), Expect(2) = 1e-051
Identities = 67/97 (69%), Positives = 82/97 (84%)
Frame = -1 / +1
Query: 912 IDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRITGSSPFAGFAVG 733
IDPDSSSN+CIEDCY+S GDD IAIKSGWDEYGI++ RPSS I VRRIT S+PF+G A+G
Sbjct: 4 IDPDSSSNVCIEDCYVSNGDDGIAIKSGWDEYGISFNRPSSNIIVRRITISTPFSGIAIG 183
Query: 732 SETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIR 622
SETSGG+ ++L E+++ ++S GI VKTN GRGG IR
Sbjct: 184 SETSGGIRDILVENISIYSSTVGIRVKTNVGRGGIIR 294
Score = 113 bits (242), Expect = 2e-024
Identities = 59/96 (61%), Positives = 63/96 (65%)
Frame = +2 / -2
Query: 626 MKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTAKPANGEEPVIRRTVIPELGRP 805
M PPLP LVLT IP EL S R PPDVSLP A P G E VI RT++ ELGR
Sbjct: 290 MIPPLPTLVLTRIPTVEL*MLIFSTRMSRIPPDVSLPMAIPEKGVEMVILRTIMLELGRL 111
Query: 806 *AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSI 913
IPYSS PLLMA+ SSP+ *QSSMQ LESGSI
Sbjct: 110 KDIPYSSHPLLMAIPSSPLLT*QSSMQTFELESGSI 3
Score = 49.6 bits (102), Expect(2) = 1e-051
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = -1 / +1
Query: 546 PDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNV 403
P Y ALP+V + V NV G +++ AG + G+ S FS ICL+N+
Sbjct: 376 PMPRYXPMALPVVGDIAVLNVVGNSIKTAGSLVGLQRSPFSNICLANI 519
>gb|CF473056.1|CF473056 RTDS1_1_C08.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_1_C08_A015 5', mRNA sequence
Length = 679
Score = 176 bits (378), Expect(2) = 3e-048
Identities = 71/133 (53%), Positives = 96/133 (72%)
Frame = -1 / -1
Query: 801 RPSSGITVRRITGSSPFAGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIR 622
RPSS I VRRIT S+PF+G A+GSETSGG+ ++L E+++ ++S GI VKTN GRGG IR
Sbjct: 679 RPSSNIIVRRITISTPFSGIAIGSETSGGIRDILVENISIYSSTVGIRVKTNVGRGGIIR 500
Query: 621 NITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGI 442
NIT S + LDNV G++ G+ G+HPD YN ALP+V + V NV G +++ AG + G+
Sbjct: 499 NITFSHIYLDNVGTGIKFSGNTGDHPDARYNPMALPVVGDIAVLNVVGSSIKTAGSLVGL 320
Query: 441 PNSAFSRICLSNV 403
S FS ICL+N+
Sbjct: 319 QRSPFSNICLANI 281
Score = 37.3 bits (75), Expect(2) = 3e-048
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / -1
Query: 393 GGAPVRPWKCEAVSGGALDVQPSPCTELTS 304
GG+ W C+ V G ++ V PSPC +L S
Sbjct: 262 GGSTGSSWDCKDVEGSSIGVTPSPCQQLQS 173
>gb|CX650550.1|CX650550 COLD1_46_A11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_46_A11_A029 5', mRNA sequence
Length = 886
Score = 136 bits (291), Expect(3) = 6e-047
Identities = 53/124 (42%), Positives = 83/124 (66%)
Frame = -1 / +1
Query: 741 AVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVG 562
A+GSE SGG+++V AE ++ NS GI +KT+ GRGGF+R+I V+ +T++N+++ + G
Sbjct: 127 ALGSEMSGGIQDVRAEDIHAINSETGIRIKTSAGRGGFVRDIFVNRMTMENMKWAFTMTG 306
Query: 561 DVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFTGGAP 382
G+HPD+ YN ALP+V+ ++ N+ NV AG ++GI + F ICLSNV T A
Sbjct: 307 SYGSHPDNKYNPDALPVVERISYSNIVATNVSVAGKLEGIAKAPFKDICLSNVTITMAAK 486
Query: 381 VRPW 370
+ +
Sbjct: 487 AKKY 498
Score = 63.8 bits (133), Expect(3) = 6e-047
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = -1 / +1
Query: 858 GDDSIAIKSGWDEYGIAYGRPSSGITVRRITGSSP 754
GDD +AIKSGWDEYGI++G PS I +RR+ G SP
Sbjct: 7 GDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISP 111
Score = 27.2 bits (53), Expect(3) = 6e-047
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1 / +1
Query: 375 PWKCEAVSGGALDVQPSPCTEL 310
PW C + G + V P PC+ L
Sbjct: 499 PWNCTYIHGLSNTVYPQPCSLL 564
>gb|DR092456.1|DR092456 STRR1_1_B05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_B05_A033 5', mRNA sequence
Length = 924
Score = 134 bits (287), Expect(3) = 9e-045
Identities = 53/124 (42%), Positives = 82/124 (66%)
Frame = -1 / -3
Query: 741 AVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVG 562
A+GSE SGG+++V AE ++ NS GI +KT GRGGF+R+I V+ +T++N+++ + G
Sbjct: 808 ALGSEMSGGIQDVRAEDIHAINSETGIRIKTFVGRGGFVRDIFVNRMTMENMKWAFTMTG 629
Query: 561 DVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFTGGAP 382
G+HPD+ YN ALP+V+ ++ N+ NV AG ++GI + F ICLSNV T A
Sbjct: 628 SYGSHPDNKYNPDALPVVERISYSNIVATNVSVAGKLEGIAKAPFKDICLSNVTITMAAK 449
Query: 381 VRPW 370
+ +
Sbjct: 448 AKKY 437
Score = 58.3 bits (121), Expect(3) = 9e-045
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = -1 / -3
Query: 852 DSIAIKSGWDEYGIAYGRPSSGITVRRITGSSP 754
D +AIKSGWDEYGI++G PS I +RR+ G SP
Sbjct: 922 DIVAIKSGWDEYGISFGMPSQHIVIRRLVGISP 824
Score = 27.2 bits (53), Expect(3) = 9e-045
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1 / -3
Query: 375 PWKCEAVSGGALDVQPSPCTEL 310
PW C + G + V P PC+ L
Sbjct: 436 PWNCTYIHGLSNTVYPQPCSLL 371
>gb|BF186258.1|BF186258 NXCI_135_B12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_135_B12 5' similar to Arabidopsis
thaliana sequence At1g19170 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 515
Score = 171 bits (369), Expect(2) = 9e-044
Identities = 69/134 (51%), Positives = 87/134 (64%)
Frame = -1 / +1
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
LQDVV G +WW ++ + +TR LL+ M SDI +SN+ ++SPFW +
Sbjct: 43 LQDVVITGYNGTIDGQGQSWWKKFRQKQMTHTRGLLLQFMWCSDIEISNITLRNSPFWTL 222
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGI 811
HP C NV I +TILAP D+PNTDGIDPDS N+ IE+CYIS GDD IAIK W YGI
Sbjct: 223 HPYDCQNVRISGLTILAPLDAPNTDGIDPDSCQNVTIENCYISVGDDCIAIKXXWXXYGI 402
Query: 810 AYGRPSSGITVRRI 769
AY RPS+ I +R +
Sbjct: 403 AYARPSANILIRNL 444
Score = 26.3 bits (51), Expect(2) = 9e-044
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENV 703
A ++GSE SGGV NV
Sbjct: 466 AAVSIGSEMSGGVSNV 513
>gb|CF475746.1|CF475746 RTWW2_15_F08.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_15_F08_A021 3', mRNA sequence
Length = 628
Score = 140 bits (300), Expect(3) = 2e-041
Identities = 56/133 (42%), Positives = 89/133 (66%)
Frame = -1 / +1
Query: 795 SSGITVRRITGSSPFAGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNI 616
S+ I R I G+ +G A+GSE SGG++ V A+ + FNS G+ +KT GRGG+++++
Sbjct: 58 SNIIIRRVIGGTHTSSGLALGSEMSGGIKGVHAQDIQIFNSRRGLRIKTAPGRGGYVKDV 237
Query: 615 TVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPN 436
+S+VT+ NV G+ G G+HPDD Y+ +ALP + +T K++ G ++ AG ++GI N
Sbjct: 238 YISNVTMKNVSVGIVFTGLYGDHPDDRYDPNALPDIQRITFKDIIGDEIKTAGSVEGIQN 417
Query: 435 SAFSRICLSNVKF 397
+ F ICLSN++F
Sbjct: 418 APFKDICLSNIQF 456
Score = 36.3 bits (73), Expect(3) = 2e-041
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 847 HRHQEWLG*VWNRLWPP 797
H HQ+WLG*VW LW P
Sbjct: 3 HFHQKWLG*VWYYLWAP 53
Score = 31.8 bits (63), Expect(3) = 2e-041
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1 / +1
Query: 372 WKCEAVSGGALDVQPSPCTEL 310
W C V G + V P PCTEL
Sbjct: 478 WNCSYVGGFSESVYPEPCTEL 540
>gb|CR394425.1|CR394425 CR394425 RN Pinus pinaster cDNA clone RN79A02, mRNA sequence
Length = 551
Score = 155 bits (333), Expect(2) = 1e-038
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -1 / +3
Query: 1077 TRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDS 898
TR +L+ELM S+DII+SN+ F +SP WN+HPVY SN++I+ VTILAP DSPNTDGIDPDS
Sbjct: 291 TRGYLVELMYSTDIIISNLTFLNSPAWNLHPVYSSNILIKYVTILAPLDSPNTDGIDPDS 470
Query: 897 SSNICIEDCYISTGDDSIAIKSGWDEY 817
S + IEDCY+ +GDD +AIKSGWDEY
Sbjct: 471 CSYVRIEDCYVVSGDDIVAIKSGWDEY 551
Score = 25.4 bits (49), Expect(2) = 1e-038
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -3 / +2
Query: 1162 CCHHRREWNYWWLR 1121
CC +R +W+Y W +
Sbjct: 203 CCDNR*QWHYRWAK 244
>gb|BX249651.1|BX249651 BX249651 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP026F10, mRNA sequence
Length = 666
Score = 159 bits (342), Expect = 3e-038
Identities = 61/99 (61%), Positives = 75/99 (75%)
Frame = -1 / +1
Query: 1065 LLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNI 886
+L+ M SDI +SN+ ++SPFW +HP C NV I +TILAP D+PNTDGIDPDS N+
Sbjct: 334 VLQFMWCSDIEISNITLRNSPFWTLHPYDCQNVRISGLTILAPLDAPNTDGIDPDSCQNV 513
Query: 885 CIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRI 769
IE+CYIS GDD IAIKSGWD+YGIAY RPS I +R +
Sbjct: 514 TIENCYISVGDDCIAIKSGWDQYGIAYARPSCNIFIRNL 630
>gb|CO365000.1|CO365000 RTK1_23_C01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_C01_A029 3', mRNA sequence
Length = 902
Score = 97.7 bits (207), Expect(2) = 4e-036
Identities = 39/95 (41%), Positives = 63/95 (66%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
A ++GSE SGGV NV ++++ + S G+ +KT+ GRGG++R I S++T D VR G+
Sbjct: 142 AAVSIGSEMSGGVSNVTVDNVHVWQSRRGMRIKTSPGRGGYVREIFYSNLTFDTVRVGIV 321
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVR 466
I D HPD+ Y+ ALP V+ + + ++G++VR
Sbjct: 322 IKTDYPEHPDEKYDPKALPKVENIIYQGLRGRDVR 426
Score = 74.8 bits (157), Expect(2) = 4e-036
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = -1 / +1
Query: 888 ICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRI 769
+ IE+CYIS GDD IAIKSGWD+YGIAY RPS+ I +R +
Sbjct: 1 VTIENCYISVGDDCIAIKSGWDQYGIAYARPSANILIRNL 120
>gb|BF610251.1|BF610251 NXSI_057_A04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_057_A04 5' similar to Arabidopsis thaliana
sequence At3g62110 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 334
Score = 133 bits (286), Expect(2) = 2e-035
Identities = 50/69 (72%), Positives = 61/69 (88%)
Frame = -1 / +1
Query: 963 IRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGI 784
I+N+TI++P +SPNTDGIDPDSSS++CIEDCYIS GDD I+IKSGWDEYGI YGRPSS I
Sbjct: 1 IQNLTIISPLNSPNTDGIDPDSSSDVCIEDCYISCGDDVISIKSGWDEYGITYGRPSSNI 180
Query: 783 TVRRITGSS 757
+RR+ G +
Sbjct: 181 IIRRVIGET 207
Score = 36.3 bits (73), Expect(2) = 2e-035
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKT 649
+G A+GSE SGG++ V A+ FNS +KT
Sbjct: 217 SGLALGSEMSGGIKXVHAQDXXIFNSRXXXRIKT 318
>gb|DT631683.1|DT631683 EST1146614 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFB51 3' end, mRNA sequence
Length = 871
Score = 147 bits (315), Expect = 2e-034
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -1 / +1
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DVV G+ WW + L TR +L+ELM S+DII+SN+ F +SP WN+
Sbjct: 535 LTDVVITGDNGTIDGQGAIWWQKFHQKKLKNTRGYLVELMYSTDIIISNLTFLNSPAWNL 714
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIK 835
HPVY SN++I+ VTILAP DSPNTDGIDPDS S + IEDCY+ +GDD +AI+
Sbjct: 715 HPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIR 870
>gb|BQ696996.1|BQ696996 NXPV_047_H12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_047_H12 5' similar to Arabidopsis
thaliana sequence At3g62110 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 574
Score = 132 bits (282), Expect(2) = 2e-032
Identities = 52/118 (44%), Positives = 78/118 (66%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
AG A+GSE SGG+ ++ E + N+ I VKT+ GRGG+++ I +S+VT++NV+ +
Sbjct: 1 AGLALGSEMSGGITDIHVEDILVINTETAISVKTSAGRGGYVKGIFISNVTMNNVKRAIG 180
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKF 397
G G+HPDD YN ALP+VD + K++ G+N+ AG GI + FS IC+SN+ F
Sbjct: 181 FTGFYGDHPDDRYNPDALPVVDRIIFKDIVGENITIAGDFHGIQKAPFSNICMSNIFF 354
Score = 28.1 bits (55), Expect(2) = 2e-032
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1 / +1
Query: 372 WKCEAVSGGALDVQPSPCTEL 310
W C V G + V P PC +L
Sbjct: 376 WSCSNVKGFSESVYPQPCADL 438
>gb|BI398038.1|BI398038 NXPV_113_G02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_113_G02 5' similar to Arabidopsis
thaliana sequence At3g62110 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 489
Score = 132 bits (282), Expect(2) = 3e-032
Identities = 52/118 (44%), Positives = 78/118 (66%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
AG A+GSE SGG+ ++ E + N+ I VKT+ GRGG+++ I +S+VT++NV+ +
Sbjct: 1 AGLALGSEMSGGITDIHVEDILVINTETAISVKTSAGRGGYVKGIFISNVTMNNVKRAIG 180
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKF 397
G G+HPDD YN ALP+VD + K++ G+N+ AG GI + FS IC+SN+ F
Sbjct: 181 FTGFYGDHPDDRYNPDALPVVDRIIFKDIVGENITIAGDFHGIQKAPFSNICMSNIFF 354
Score = 27.6 bits (54), Expect(2) = 3e-032
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -1 / +1
Query: 372 WKCEAVSGGALDVQPSPCTEL 310
W C V G + V P PC L
Sbjct: 376 WSCSXVKGFSESVYPQPCAXL 438
>gb|CX713880.1|CX713880 RTPQ1_14_H06.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_14_H06_A032 3', mRNA sequence
Length = 630
Score = 139 bits (299), Expect = 3e-032
Identities = 58/107 (54%), Positives = 74/107 (69%)
Frame = -1 / -1
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DVV G+ WW + L TR +L+ELM S+DII+SN+ F +SP WN+
Sbjct: 321 LTDVVITGDNGTIDGQGAIWWQKFHQKKLKNTRGYLVELMYSTDIIISNLTFLNSPAWNL 142
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDD 850
HPVY SN++I+ VTILAP DSPNTDGIDP+S S + IEDCY+ +GDD
Sbjct: 141 HPVYSSNILIQYVTILAPLDSPNTDGIDPNSCSYVRIEDCYVVSGDD 1
>gb|BG673788.1|BG673788 NXPV_075_A11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_A11 5' similar to Arabidopsis
thaliana sequence At3g62110 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 529
Score = 132 bits (282), Expect(2) = 1e-031
Identities = 52/118 (44%), Positives = 78/118 (66%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
AG A+GSE SGG+ ++ E + N+ I VKT+ GRGG+++ I +S+VT++NV+ +
Sbjct: 1 AGLALGSEMSGGITDIHVEDILVINTETAISVKTSAGRGGYVKGIFISNVTMNNVKRAIG 180
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKF 397
G G+HPDD YN ALP+VD + K++ G+N+ AG GI + FS IC+SN+ F
Sbjct: 181 FTGFYGDHPDDRYNPDALPVVDRIIFKDIVGENITIAGDFHGIQKAPFSNICMSNIFF 354
Score = 25.4 bits (49), Expect(2) = 1e-031
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -1 / +1
Query: 372 WKCEAVSGGALDVQPSPC 319
W C V G + V P PC
Sbjct: 376 WSCSNVKGFSESVYPQPC 429
>gb|DR119315.1|DR119315 RTMG1_22_B06.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_22_B06_A029 5', mRNA sequence
Length = 666
Score = 125 bits (267), Expect(2) = 6e-030
Identities = 49/74 (66%), Positives = 62/74 (83%)
Frame = -1 / +3
Query: 1077 TRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDS 898
TR +L+ELM S+DII+SN+ F +SP WN+HPVY SN++I+ VTILAP DSPNTDGIDPDS
Sbjct: 444 TRGYLVELMYSTDIIISNLTFLNSPAWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDS 623
Query: 897 SSNICIEDCYISTG 856
S + IEDCY+ +G
Sbjct: 624 CSYVRIEDCYVVSG 665
Score = 26.7 bits (52), Expect(2) = 6e-030
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3 / +1
Query: 1162 CCHHRREWNYWWLRQRVVGYV 1100
CC +R +W Y W R +V +
Sbjct: 358 CCDNR*QWYYRWARCNLVAKI 420
>gb|DR688373.1|DR688373 EST1078457 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC552 3' end, mRNA sequence
Length = 876
Score = 106 bits (226), Expect(2) = 9e-026
Identities = 36/97 (37%), Positives = 66/97 (68%)
Frame = -1 / +1
Query: 681 FNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDA 502
+N+ G+ VKT+ GRGG+I NIT+S++T++NV+ ++ D +HPD +++ +ALP++
Sbjct: 4 YNAAAGVRVKTDIGRGGYITNITISNITMENVKIPIKFTADSNDHPDSNWDLNALPLIKG 183
Query: 501 LTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFTG 391
+ ++++ G+++ A KG+ F ICLSN+K G
Sbjct: 184 IIIRDIVGKDIHSAPTFKGLHKIPFVDICLSNIKLEG 294
Score = 31.3 bits (62), Expect(2) = 9e-026
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1 / +1
Query: 372 WKCEAVSGGALDVQPSPCT 316
W CE V G + +V PSPC+
Sbjct: 316 WHCEFVEGFSANVSPSPCS 372
>gb|DT634835.1|DT634835 EST1149766 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGA30 3' end, mRNA sequence
Length = 816
Score = 106 bits (226), Expect(2) = 9e-026
Identities = 36/97 (37%), Positives = 66/97 (68%)
Frame = -1 / +3
Query: 681 FNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDA 502
+N+ G+ VKT+ GRGG+I NIT+S++T++NV+ ++ D +HPD +++ +ALP++
Sbjct: 12 YNAAAGVRVKTDIGRGGYITNITISNITMENVKIPIKFTADSNDHPDSNWDLNALPLIKG 191
Query: 501 LTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFTG 391
+ ++++ G+++ A KG+ F ICLSN+K G
Sbjct: 192 IIIRDIVGKDIHSAPTFKGLHKIPFVDICLSNIKLEG 302
Score = 31.3 bits (62), Expect(2) = 9e-026
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1 / +3
Query: 372 WKCEAVSGGALDVQPSPCT 316
W CE V G + +V PSPC+
Sbjct: 324 WHCEFVEGFSANVSPSPCS 380
>gb|AI812622.1|AI812622 17B4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 479
Score = 97.7 bits (207), Expect(2) = 3e-025
Identities = 39/95 (41%), Positives = 63/95 (66%)
Frame = -1 / +3
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
A ++GSE SGGV NV ++++ + S G+ +KT+ GRGG++R I S++T D VR G+
Sbjct: 84 AAVSIGSEMSGGVSNVTVDNVHVWQSRRGMRIKTSPGRGGYVREIFYSNLTFDTVRVGIV 263
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVR 466
I D HPD+ Y+ ALP V+ + + ++G++VR
Sbjct: 264 IKTDYPEHPDEKYDPKALPKVENIIYQGLRGRDVR 368
Score = 38.2 bits (77), Expect(2) = 3e-025
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1 / +3
Query: 828 WDEYGIAYGRPSSGITVRRI 769
WD+YGIAY RPS+ I +R +
Sbjct: 3 WDQYGIAYARPSANILIRNL 62
>gb|CX647415.1|CX647415 COLD1_16_E06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_16_E06_A029 3', mRNA sequence
Length = 571
Score = 103 bits (219), Expect(2) = 6e-025
Identities = 37/87 (42%), Positives = 61/87 (70%)
Frame = -1 / +2
Query: 657 VKTNTGRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDALTVKNVQG 478
+KT GRGG+++++ +S+VT+ NV G+ G G+HPDD Y+ +ALP + +T K++ G
Sbjct: 2 IKTAPGRGGYVKDVYISNVTMKNVSVGIVFTGLYGDHPDDRYDPNALPDIQRITFKDIIG 181
Query: 477 QNVREAGLIKGIPNSAFSRICLSNVKF 397
++ AG ++GI N+ F ICLSN++F
Sbjct: 182 DEIKTAGSVEGIQNAPFKDICLSNIQF 262
Score = 31.8 bits (63), Expect(2) = 6e-025
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1 / +2
Query: 372 WKCEAVSGGALDVQPSPCTEL 310
W C V G + V P PCTEL
Sbjct: 284 WNCSYVGGFSESVYPEPCTEL 346
>gb|AA739942.1|AA739942 707 PtIFG2 Pinus taeda cDNA clone 9140M 3', mRNA sequence
Length = 649
Score = 68.9 bits (144), Expect(3) = 6e-024
Identities = 27/46 (58%), Positives = 32/46 (69%)
Frame = -1 / +1
Query: 666 GIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYN 529
GI VKTN GRGG IRNIT S + DNV G++ G+ G+HPD YN
Sbjct: 79 GIRVKTNVGRGGIIRNITFSHIYXDNVGTGIKFSGNTGDHPDARYN 216
Score = 43.2 bits (88), Expect(3) = 6e-024
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = -1 / +3
Query: 519 LPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNV 403
LP+V + V +V G +++ AG + G+ S FS ICL+N+
Sbjct: 225 LPVVGDIAVLDVVGSSIKTAGSLVGLQRSPFSNICLANI 341
Score = 37.3 bits (75), Expect(3) = 6e-024
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / +3
Query: 393 GGAPVRPWKCEAVSGGALDVQPSPCTELTS 304
GG+ W C+ V G ++ V PSPC +L S
Sbjct: 360 GGSTGSSWDCKDVEGSSIGVTPSPCQQLQS 449
>gb|CO365080.1|CO365080 RTK1_23_C01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_C01_A029 5', mRNA sequence
Length = 854
Score = 102 bits (218), Expect = 4e-021
Identities = 42/89 (47%), Positives = 55/89 (61%)
Frame = -1 / +2
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
LQDVV G +WW ++ + +TR LL+ M SDI +SN+ ++SPFW +
Sbjct: 479 LQDVVITGYNGTIDGQGQSWWKKFRQKQMTHTRGLLLQFMWCSDIEISNITLRNSPFWTL 658
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDP 904
HP C NV I +TILAP D+PNTDGIDP
Sbjct: 659 HPYDCQNVRISGLTILAPLDAPNTDGIDP 745
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 663,299,544
Number of Sequences: 355925
Number of extensions: 11457192
Number of successful extensions: 78213
Number of sequences better than 1.0e-020: 46
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 18157423080
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)