TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2646712.2.1
(581 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO370011.1|CO370011 RTK1_65_A04.b1_A029 Roots minus pota... 120 7e-027
gb|AY064169.1| Pinus taeda cinnamoyl-CoA reductase mRNA, co... 119 2e-026
gb|CF399336.1|CF399336 RTDS3_28_D01.b1_A022 Drought-stresse... 118 4e-026
gb|CF472400.1|CF472400 RTDS1_9_F04.g1_A015 Drought-stressed... 118 4e-026
gb|CO159973.1|CO159973 FLD1_17_G11.b1_A029 Root flooded Pin... 118 4e-026
gb|CO167640.1|CO167640 FLD1_70_E10.b1_A029 Root flooded Pin... 118 4e-026
gb|CO174041.1|CO174041 NDL1_41_G12.b1_A029 Needles control ... 118 4e-026
gb|CO368279.1|CO368279 RTK1_39_E03.g1_A029 Roots minus pota... 118 4e-026
gb|CX647080.1|CX647080 COLD1_13_H09.b1_A029 Root cold Pinus... 118 4e-026
gb|DR017730.1|DR017730 STRS1_18_D04.b1_A034 Shoot tip pitch... 118 4e-026
gb|DR017808.1|DR017808 STRS1_18_D04.g1_A034 Shoot tip pitch... 118 4e-026
gb|DR022326.1|DR022326 STRS1_50_G10.b1_A034 Shoot tip pitch... 118 4e-026
gb|DR057327.1|DR057327 RTNIT1_5_D06.b1_A029 Roots minus nit... 118 4e-026
gb|DR093311.1|DR093311 STRR1_7_A10.g1_A033 Stem Response Re... 118 4e-026
gb|DR094057.1|DR094057 STRR1_12_D11.b1_A033 Stem Response R... 118 4e-026
gb|DR160331.1|DR160331 RTFE1_5_H08.b1_A029 Roots minus iron... 118 4e-026
gb|DR384893.1|DR384893 RTHG1_5_F12.b1_A029 Roots plus added... 118 4e-026
gb|DR386732.1|DR386732 RTHG1_17_D02.b1_A029 Roots plus adde... 118 4e-026
gb|DR387793.1|DR387793 RTHG1_24_E03.b1_A029 Roots plus adde... 118 4e-026
gb|CO164054.1|CO164054 FLD1_45_B08.g1_A029 Root flooded Pin... 117 7e-026
gb|CF393245.1|CF393245 RTDR3_20_G03.b1_A022 Loblolly pine r... 116 2e-025
gb|DR025539.1|DR025539 STRS1_72_E11.b1_A034 Shoot tip pitch... 114 6e-025
gb|DR054859.1|DR054859 RTCA1_20_B04.b1_A029 Roots minus cal... 112 2e-024
gb|CO174126.1|CO174126 NDL1_41_G12.g1_A029 Needles control ... 111 6e-024
gb|BX250482.1|BX250482 BX250482 Pinus pinaster differenciat... 109 2e-023
gb|CF470891.1|CF470891 RTDS1_15_B09.b1_A015 Drought-stresse... 108 3e-023
gb|CF470986.1|CF470986 RTDS1_15_B09.g1_A015 Drought-stresse... 108 3e-023
gb|CF479470.1|CF479470 RTWW3_22_E09.b1_A022 Well-watered lo... 108 3e-023
gb|DR177909.1|DR177909 RTMNUT1_8_C12.b1_A029 Roots minus mi... 106 1e-022
gb|CO173401.1|CO173401 NDL1_36_B03.b1_A029 Needles control ... 101 5e-021
gb|CO160036.1|CO160036 FLD1_17_G11.g1_A029 Root flooded Pin... 61 6e-021
>gb|CO370011.1|CO370011 RTK1_65_A04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_A04_A029 3', mRNA sequence
Length = 764
Score = 120 bits (257), Expect = 7e-027
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = -1 / +1
Query: 569 RYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAA 390
RY+CA++ LHR D+ L + FP YP+P +CSDE NPRKQPYK SNQ+LR+LGL FTP
Sbjct: 268 RYLCAESNLHRGDLNHMLAELFPHYPIPTKCSDEENPRKQPYKFSNQKLRDLGLSFTPMK 447
Query: 389 QALYDTVVCFQEKGIL 342
+ L DTV C Q+KG +
Sbjct: 448 KCLADTVACLQQKGFI 495
>gb|AY064169.1| Pinus taeda cinnamoyl-CoA reductase mRNA, complete cds
Length = 1359
Score = 119 bits (254), Expect = 2e-026
Identities = 44/77 (57%), Positives = 61/77 (79%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV +L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 972 ASGRYLCAESVLHRGDVVDSLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 1151
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 1152 PAKQCLYETVISLQEKG 1202
>gb|CF399336.1|CF399336 RTDS3_28_D01.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_28_D01_A022 3', mRNA sequence
Length = 407
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 78 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPAKVKEDGKPRVKPWKVSNQKLKDLGLEFT 257
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 258 PAKQCLYETVISLQEKG 308
>gb|CF472400.1|CF472400 RTDS1_9_F04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_9_F04_A015 5', mRNA sequence
Length = 776
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / -1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 407 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 228
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 227 PAKQCLYETVISLQEKG 177
>gb|CO159973.1|CO159973 FLD1_17_G11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_17_G11_A029 3', mRNA sequence
Length = 457
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 89 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 268
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 269 PAKQCLYETVISLQEKG 319
>gb|CO167640.1|CO167640 FLD1_70_E10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_E10_A029 3', mRNA sequence
Length = 831
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 460 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 639
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 640 PAKQCLYETVISLQEKG 690
>gb|CO174041.1|CO174041 NDL1_41_G12.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_41_G12_A029 3', mRNA sequence
Length = 625
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 194 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 373
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 374 PAKQCLYETVISLQEKG 424
>gb|CO368279.1|CO368279 RTK1_39_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_39_E03_A029 5', mRNA sequence
Length = 850
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 398 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 219
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 218 PAKQCLYETVISLQEKG 168
>gb|CX647080.1|CX647080 COLD1_13_H09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_13_H09_A029 3', mRNA sequence
Length = 395
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 78 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 257
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 258 PAKQCLYETVISLQEKG 308
>gb|DR017730.1|DR017730 STRS1_18_D04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_D04_A034 3', mRNA sequence
Length = 812
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 374 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 553
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 554 PAKQCLYETVISLQEKG 604
>gb|DR017808.1|DR017808 STRS1_18_D04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_D04_A034 5', mRNA sequence
Length = 810
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 469 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 648
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 649 PAKQCLYETVISLQEKG 699
>gb|DR022326.1|DR022326 STRS1_50_G10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_50_G10_A034 3', mRNA sequence
Length = 887
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 454 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 633
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 634 PAKQCLYETVISLQEKG 684
>gb|DR057327.1|DR057327 RTNIT1_5_D06.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_5_D06_A029 3', mRNA sequence
Length = 823
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 455 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 634
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 635 PAKQCLYETVISLQEKG 685
>gb|DR093311.1|DR093311 STRR1_7_A10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_7_A10_A033 5', mRNA sequence
Length = 582
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 124 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 303
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 304 PAKQCLYETVISLQEKG 354
>gb|DR094057.1|DR094057 STRR1_12_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_D11_A033 3', mRNA sequence
Length = 797
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 426 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 605
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 606 PAKQCLYETVISLQEKG 656
>gb|DR160331.1|DR160331 RTFE1_5_H08.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_5_H08_A029 3', mRNA sequence
Length = 867
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 410 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 589
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 590 PAKQCLYETVISLQEKG 640
>gb|DR384893.1|DR384893 RTHG1_5_F12.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_5_F12_A029 3', mRNA sequence
Length = 710
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 275 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 454
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 455 PAKQCLYETVISLQEKG 505
>gb|DR386732.1|DR386732 RTHG1_17_D02.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_17_D02_A029 3', mRNA sequence
Length = 890
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 456 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 635
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 636 PAKQCLYETVISLQEKG 686
>gb|DR387793.1|DR387793 RTHG1_24_E03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_E03_A029 3', mRNA sequence
Length = 700
Score = 118 bits (252), Expect = 4e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 332 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 511
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 512 PAKQCLYETVISLQEKG 562
>gb|CO164054.1|CO164054 FLD1_45_B08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_B08_A029 5', mRNA sequence
Length = 928
Score = 117 bits (250), Expect = 7e-026
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 371 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 192
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 191 PAKQCLYETVINLQEKG 141
>gb|CF393245.1|CF393245 RTDR3_20_G03.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_20_G03_A022 3', mRNA
sequence
Length = 402
Score = 116 bits (247), Expect = 2e-025
Identities = 43/77 (55%), Positives = 58/77 (75%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR P+K+SNQ+ ++LGLEFT
Sbjct: 20 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVNPWKVSNQKFKDLGLEFT 199
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 200 PAKQCLYETVISLQEKG 250
>gb|DR025539.1|DR025539 STRS1_72_E11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_72_E11_A034 3', mRNA sequence
Length = 707
Score = 114 bits (243), Expect = 6e-025
Identities = 43/77 (55%), Positives = 59/77 (76%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 243 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 422
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q L +TV+ QEKG
Sbjct: 423 PAKQCLSETVISLQEKG 473
>gb|DR054859.1|DR054859 RTCA1_20_B04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_20_B04_A029 3', mRNA sequence
Length = 500
Score = 112 bits (239), Expect = 2e-024
Identities = 43/77 (55%), Positives = 59/77 (76%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VL R DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 35 ASGRYLCAESVLPRGDVVDLLAWMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 214
Query: 398 PAAQALYDTVVCFQEKG 348
PA Q LY+TV+ QEKG
Sbjct: 215 PAKQCLYETVISLQEKG 265
>gb|CO174126.1|CO174126 NDL1_41_G12.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_41_G12_A029 5', mRNA sequence
Length = 637
Score = 111 bits (236), Expect = 6e-024
Identities = 41/74 (55%), Positives = 57/74 (77%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P+K+SNQ+L++LGLEFT
Sbjct: 414 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKPWKVSNQKLKDLGLEFT 593
Query: 398 PAAQALYDTVVCFQ 357
PA Q LY+TV+ Q
Sbjct: 594 PAKQCLYETVISLQ 635
>gb|BX250482.1|BX250482 BX250482 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP037E09, mRNA sequence
Length = 435
Score = 109 bits (233), Expect = 2e-023
Identities = 41/68 (60%), Positives = 50/68 (73%)
Frame = -1 / +3
Query: 545 LHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVV 366
LHR D+ L + FP YP+P +CSDE NPRKQPYK SNQ+LR+LGL FTP + L DTV
Sbjct: 12 LHRGDLTHMLAELFPHYPIPTKCSDEENPRKQPYKFSNQKLRDLGLSFTPMKKCLADTVA 191
Query: 365 CFQEKGIL 342
C Q+KG +
Sbjct: 192 CLQQKGFI 215
>gb|CF470891.1|CF470891 RTDS1_15_B09.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_B09_A015 3', mRNA sequence
Length = 636
Score = 108 bits (231), Expect = 3e-023
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = -1 / +1
Query: 569 RYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAA 390
RY+C D LHR ++V L K P PVP +CSDE+NPRKQPYK SN+++R+LGL F P
Sbjct: 97 RYLCGDCSLHRGELVDMLAKLCPRCPVPTKCSDEINPRKQPYKFSNRKIRDLGLSFMPID 276
Query: 389 QALYDTVVCFQEKGIL 342
++L DTV QE+G L
Sbjct: 277 KSLADTVASLQERGFL 324
>gb|CF470986.1|CF470986 RTDS1_15_B09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_B09_A015 5', mRNA sequence
Length = 771
Score = 108 bits (231), Expect = 3e-023
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = -1 / +3
Query: 569 RYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAA 390
RY+C D LHR ++V L K P PVP +CSDE+NPRKQPYK SN+++R+LGL F P
Sbjct: 264 RYLCGDCSLHRGELVDMLAKLCPRCPVPTKCSDEINPRKQPYKFSNRKIRDLGLSFMPID 443
Query: 389 QALYDTVVCFQEKGIL 342
++L DTV QE+G L
Sbjct: 444 KSLADTVASLQERGFL 491
>gb|CF479470.1|CF479470 RTWW3_22_E09.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_22_E09_A022 3', mRNA sequence
Length = 686
Score = 108 bits (231), Expect = 3e-023
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = -1 / +2
Query: 569 RYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAA 390
RY+C D LHR ++V L K P PVP +CSDE+NPRKQPYK SN+++R+LGL F P
Sbjct: 263 RYLCGDCSLHRGELVDMLAKLCPRCPVPTKCSDEINPRKQPYKFSNRKIRDLGLSFMPID 442
Query: 389 QALYDTVVCFQEKGIL 342
++L DTV QE+G L
Sbjct: 443 KSLADTVASLQERGFL 490
>gb|DR177909.1|DR177909 RTMNUT1_8_C12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_C12_A029 3', mRNA sequence
Length = 790
Score = 106 bits (227), Expect = 1e-022
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = -1 / +1
Query: 569 RYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAA 390
RY+CA+ LHR ++V L K P PVP +CSDE+NPRKQPYK SN ++++LGL FTP
Sbjct: 355 RYVCAECSLHRGELVDMLAKLCPRCPVPTKCSDEINPRKQPYKFSNGKIKDLGLSFTPID 534
Query: 389 QALYDTVVCFQEKGIL 342
++L D V QE+G L
Sbjct: 535 KSLADAVASLQERGFL 582
>gb|CO173401.1|CO173401 NDL1_36_B03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_36_B03_A029 3', mRNA sequence
Length = 755
Score = 101 bits (215), Expect = 5e-021
Identities = 38/76 (50%), Positives = 52/76 (68%)
Frame = -1 / +3
Query: 569 RYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAA 390
RY+CA+ LHR D+V+ L P YP+P +CSDE+NPR Q +K SNQ+L++LGL F P
Sbjct: 315 RYLCAECSLHRGDLVQMLANLCPCYPLPAKCSDEINPRAQSFKFSNQKLKDLGLSFRPIN 494
Query: 389 QALYDTVVCFQEKGIL 342
Q + +TV +KG L
Sbjct: 495 QCMTETVASLHDKGFL 542
>gb|CO160036.1|CO160036 FLD1_17_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_17_G11_A029 5', mRNA sequence
Length = 439
Score = 61.1 bits (127), Expect(2) = 6e-021
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQP 447
A+GRY+CA++VLHR DVV L FP YP+P + ++ PR +P
Sbjct: 59 ASGRYLCAESVLHRGDVVDLLASMFPQYPIPTKVKEDGKPRVKP 190
Score = 59.3 bits (123), Expect(2) = 6e-021
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = -1 / +3
Query: 443 KISNQRLRELGLEFTPAAQALYDTVVCFQEKG 348
K+SNQ+L++LGLEFTPA Q LY+TV+ QEKG
Sbjct: 195 KVSNQKLKDLGLEFTPAKQCLYETVISLQEKG 290
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 257,374,893
Number of Sequences: 355925
Number of extensions: 3539495
Number of successful extensions: 42085
Number of sequences better than 1.0e-020: 35
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7706846940
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)