TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR023271.1|DR023271 STRS1_56_B12.g1_A034 Shoot tip pitch... 155 2e-037
gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pin... 154 6e-037
gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iro... 154 6e-037
gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iro... 154 6e-037
gb|DR088892.1|DR088892 RTAL1_5_G05.b1_A029 Roots plus added... 153 9e-037
gb|DR088977.1|DR088977 RTAL1_5_G05.g1_A029 Roots plus added... 153 9e-037
gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response R... 152 2e-036
gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus... 151 3e-036
gb|DR047931.1|DR047931 RTBOR1_5_C10.g2_A029 Roots plus adde... 151 4e-036
gb|DR058833.1|DR058833 RTNIT1_14_E01.b1_A029 Roots minus ni... 150 8e-036
gb|DR018738.1|DR018738 STRS1_25_H09.b1_A034 Shoot tip pitch... 149 1e-035
gb|DR060851.1|DR060851 RTNIT1_30_A04.g1_A029 Roots minus ni... 149 1e-035
gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magn... 149 1e-035
gb|CF398598.1|CF398598 RTDS3_13_D12.b1_A022 Drought-stresse... 139 2e-032
gb|BX255099.1|BX255099 BX255099 Pinus pinaster differenciat... 126 1e-028
gb|BE496448.1|BE496448 NXCI_018_C03_F NXCI (Nsf Xylem Compr... 86 2e-027
gb|CF401310.1|CF401310 RTWW1_11_E11.g1_A015 Well-watered lo... 80 4e-023
>gb|DR023271.1|DR023271 STRS1_56_B12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_B12_A034 5', mRNA sequence
Length = 835
Score = 155 bits (333), Expect = 2e-037
Identities = 63/89 (70%), Positives = 72/89 (80%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P VSF ARDLIRGLLVKEP++RL RGAT
Sbjct: 431 LLFGKTPFKGSGNRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYKRGAT 610
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNID 310
EIK+HPFFEG+NWALIR PPE K ID
Sbjct: 611 EIKQHPFFEGVNWALIRCATPPEIPKPID 697
Score = 116 bits (248), Expect = 1e-025
Identities = 52/88 (59%), Positives = 61/88 (69%)
Frame = +2 / -2
Query: 305 AVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTA 484
++S+ F +SGG HRI+AQF PSKKGC LISVAP +R GSFTS PLI+S A KLT
Sbjct: 702 SMSIGFGISGGVAHRIRAQFTPSKKGCCLISVAPRLYANRCCGSFTSKPLIKSLAAKLTV 523
Query: 485 GLSGNFKPCEITFESVSSLPGPLNGVLP 568
G SGN + C T SV+ LP PL GV P
Sbjct: 522 GDSGNLRGCPTTLNSVARLPEPLKGVFP 439
>gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_63_E10_A029 5', mRNA sequence
Length = 882
Score = 154 bits (330), Expect = 6e-037
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3 / -2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYG TPFKG N ETL NV+ Q LKFPD+P VSF ARDLIRGLLVK+P++R+G RGAT
Sbjct: 569 LLYGTTPFKGASNRETLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGAT 390
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNID 310
EIK+HPFF+ NWALIR T PP+ K +D
Sbjct: 389 EIKQHPFFDSANWALIRSTTPPQIPKPVD 303
Score = 114 bits (244), Expect = 5e-025
Identities = 54/86 (62%), Positives = 61/86 (70%)
Frame = +2 / +1
Query: 320 FRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAGLSGN 499
F + GG V RI+AQF SK GC LISVAPL +P GSFTS PLI+SRA KLT G SGN
Sbjct: 313 FGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGESGN 492
Query: 500 FKPCEITFESVSSLPGPLNGVLP*SN 577
F C TF +VS L PLNGV+P*S+
Sbjct: 493 FNGCPTTFSNVSRLLAPLNGVVP*SS 570
>gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 3', mRNA sequence
Length = 774
Score = 154 bits (330), Expect = 6e-037
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYG TPFKG N ETL NV+ Q LKFPD+P VSF ARDLIRGLLVK+P++R+G RGAT
Sbjct: 198 LLYGTTPFKGASNRETLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGAT 377
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNID 310
EIK+HPFF+ NWALIR T PP+ K +D
Sbjct: 378 EIKQHPFFDSANWALIRSTTPPQIPKPVD 464
Score = 114 bits (244), Expect = 5e-025
Identities = 54/86 (62%), Positives = 61/86 (70%)
Frame = +2 / -3
Query: 320 FRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAGLSGN 499
F + GG V RI+AQF SK GC LISVAPL +P GSFTS PLI+SRA KLT G SGN
Sbjct: 454 FGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGESGN 275
Query: 500 FKPCEITFESVSSLPGPLNGVLP*SN 577
F C TF +VS L PLNGV+P*S+
Sbjct: 274 FNGCPTTFSNVSRLLAPLNGVVP*SS 197
>gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 5', mRNA sequence
Length = 871
Score = 154 bits (330), Expect = 6e-037
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYG TPFKG N ETL NV+ Q LKFPD+P VSF ARDLIRGLLVK+P++R+G RGAT
Sbjct: 335 LLYGTTPFKGASNRETLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGAT 514
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNID 310
EIK+HPFF+ NWALIR T PP+ K +D
Sbjct: 515 EIKQHPFFDSANWALIRSTTPPQIPKPVD 601
Score = 114 bits (244), Expect = 5e-025
Identities = 54/86 (62%), Positives = 61/86 (70%)
Frame = +2 / -2
Query: 320 FRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAGLSGN 499
F + GG V RI+AQF SK GC LISVAPL +P GSFTS PLI+SRA KLT G SGN
Sbjct: 591 FGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGESGN 412
Query: 500 FKPCEITFESVSSLPGPLNGVLP*SN 577
F C TF +VS L PLNGV+P*S+
Sbjct: 411 FNGCPTTFSNVSRLLAPLNGVVP*SS 334
>gb|DR088892.1|DR088892 RTAL1_5_G05.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_G05_A029 3', mRNA sequence
Length = 762
Score = 153 bits (329), Expect = 9e-037
Identities = 61/90 (67%), Positives = 73/90 (81%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG N TL+NV+ Q LKFP+ P VS+ A+DLIRGLLVKEP++RL RGAT
Sbjct: 54 LLFGKTPFKGASNTATLNNVVGQPLKFPETPVVSYAAKDLIRGLLVKEPQHRLAFKRGAT 233
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDT 307
EIK+HPFFEGLNWALIR + PPE K ++T
Sbjct: 234 EIKQHPFFEGLNWALIRCSTPPEVPKPLET 323
Score = 108 bits (230), Expect = 4e-023
Identities = 51/87 (58%), Positives = 58/87 (66%)
Frame = +2 / -3
Query: 308 VSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAG 487
VS F SGG RI+AQF+PSKKGC LISVAP +R GSFTS PLI+S A LT G
Sbjct: 322 VSKGFGTSGGVEQRIRAQFKPSKKGCCLISVAPRLNANRCCGSFTSKPLIKSLAA*LTTG 143
Query: 488 LSGNFKPCEITFESVSSLPGPLNGVLP 568
+SGN + C T SV+ L PLNGV P
Sbjct: 142 VSGNLRGCPTTLLSVAVLLAPLNGVFP 62
>gb|DR088977.1|DR088977 RTAL1_5_G05.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_G05_A029 5', mRNA sequence
Length = 853
Score = 153 bits (329), Expect = 9e-037
Identities = 61/90 (67%), Positives = 73/90 (81%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG N TL+NV+ Q LKFP+ P VS+ A+DLIRGLLVKEP++RL RGAT
Sbjct: 278 LLFGKTPFKGASNTATLNNVVGQPLKFPETPVVSYAAKDLIRGLLVKEPQHRLAFKRGAT 457
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDT 307
EIK+HPFFEGLNWALIR + PPE K ++T
Sbjct: 458 EIKQHPFFEGLNWALIRCSTPPEVPKPLET 547
Score = 108 bits (230), Expect = 4e-023
Identities = 51/87 (58%), Positives = 58/87 (66%)
Frame = +2 / -2
Query: 308 VSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAG 487
VS F SGG RI+AQF+PSKKGC LISVAP +R GSFTS PLI+S A LT G
Sbjct: 546 VSKGFGTSGGVEQRIRAQFKPSKKGCCLISVAPRLNANRCCGSFTSKPLIKSLAA*LTTG 367
Query: 488 LSGNFKPCEITFESVSSLPGPLNGVLP 568
+SGN + C T SV+ L PLNGV P
Sbjct: 366 VSGNLRGCPTTLLSVAVLLAPLNGVFP 286
>gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_B08_A033 3', mRNA sequence
Length = 843
Score = 152 bits (326), Expect = 2e-036
Identities = 61/89 (68%), Positives = 70/89 (78%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYG TPFKG N ETL NV+ Q LKFPD P VSF ARDLIRGLLVK+P++R+G RGAT
Sbjct: 378 LLYGTTPFKGASNRETLENVVGQPLKFPDCPTVSFAARDLIRGLLVKDPQHRIGFKRGAT 557
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNID 310
EIK+HPFF+ NWALIR T PP+ K +D
Sbjct: 558 EIKQHPFFDSANWALIRSTTPPQIPKPVD 644
Score = 115 bits (245), Expect = 3e-025
Identities = 54/86 (62%), Positives = 61/86 (70%)
Frame = +2 / -3
Query: 320 FRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAGLSGN 499
F + GG V RI+AQF SK GC LISVAPL +P GSFTS PLI+SRA KLT G SGN
Sbjct: 634 FGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGQSGN 455
Query: 500 FKPCEITFESVSSLPGPLNGVLP*SN 577
F C TF +VS L PLNGV+P*S+
Sbjct: 454 FNGCPTTFSNVSRLLAPLNGVVP*SS 377
>gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_B10_A029 5', mRNA sequence
Length = 781
Score = 151 bits (325), Expect = 3e-036
Identities = 60/89 (67%), Positives = 70/89 (78%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYG TPFKG N ETL NV+ Q LKFPD+P VSF ARDLIRGLLVK+P++R+G RGAT
Sbjct: 481 LLYGTTPFKGASNRETLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGAT 302
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNID 310
E K+HPFF+ NWALIR T PP+ K +D
Sbjct: 301 ETKQHPFFDSANWALIRSTTPPQIPKPVD 215
Score = 114 bits (243), Expect = 6e-025
Identities = 53/86 (61%), Positives = 61/86 (70%)
Frame = +2 / +3
Query: 320 FRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAGLSGN 499
F + GG V RI+AQF SK GC L+SVAPL +P GSFTS PLI+SRA KLT G SGN
Sbjct: 225 FGI*GGVVLRIRAQFALSKNGCCLVSVAPLLKPILCCGSFTSKPLIKSRAAKLTVGESGN 404
Query: 500 FKPCEITFESVSSLPGPLNGVLP*SN 577
F C TF +VS L PLNGV+P*S+
Sbjct: 405 FNGCPTTFSNVSRLLAPLNGVVP*SS 482
>gb|DR047931.1|DR047931 RTBOR1_5_C10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_5_C10_A029 5', mRNA sequence
Length = 787
Score = 151 bits (324), Expect = 4e-036
Identities = 60/89 (67%), Positives = 70/89 (78%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYG PFKG N ETL NV+ Q LKFPD+P VSF ARDLIRGLLVK+P++R+G RGAT
Sbjct: 457 LLYGTIPFKGASNRETLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGAT 278
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNID 310
EIK+HPFF+ NWALIR T PP+ K +D
Sbjct: 277 EIKQHPFFDSANWALIRSTTPPQIPKPVD 191
Score = 114 bits (243), Expect = 6e-025
Identities = 53/86 (61%), Positives = 61/86 (70%)
Frame = +2 / +3
Query: 320 FRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAGLSGN 499
F + GG V RI+AQF SK GC LISVAPL +P GSFTS PLI+SRA KLT G SGN
Sbjct: 201 FGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGESGN 380
Query: 500 FKPCEITFESVSSLPGPLNGVLP*SN 577
F C TF +VS L PLNG++P*S+
Sbjct: 381 FNGCPTTFSNVSRLLAPLNGIVP*SS 458
>gb|DR058833.1|DR058833 RTNIT1_14_E01.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_E01_A029 3', mRNA sequence
Length = 647
Score = 150 bits (322), Expect = 8e-036
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = -3 / +3
Query: 567 GKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIK 388
GKTPFKG GN TL NV+ Q L+FP++P VSF ARDLIRGLLVKEP++RL RGATEIK
Sbjct: 33 GKTPFKGSGNRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYKRGATEIK 212
Query: 387 RHPFFEGLNWALIRWTAPPETLKNID 310
+HPFFEG+NWALIR PPE K ID
Sbjct: 213 QHPFFEGVNWALIRCATPPEIPKPID 290
Score = 116 bits (248), Expect = 1e-025
Identities = 52/88 (59%), Positives = 61/88 (69%)
Frame = +2 / -2
Query: 305 AVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTA 484
++S+ F +SGG HRI+AQF PSKKGC LISVAP +R GSFTS PLI+S A KLT
Sbjct: 295 SMSIGFGISGGVAHRIRAQFTPSKKGCCLISVAPRLYANRCCGSFTSKPLIKSLAAKLTV 116
Query: 485 GLSGNFKPCEITFESVSSLPGPLNGVLP 568
G SGN + C T SV+ LP PL GV P
Sbjct: 115 GDSGNLRGCPTTLNSVARLPEPLKGVFP 32
>gb|DR018738.1|DR018738 STRS1_25_H09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_H09_A034 3', mRNA sequence
Length = 838
Score = 149 bits (321), Expect = 1e-035
Identities = 59/86 (68%), Positives = 70/86 (81%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
L++GKTPFKG GN TL NV+ Q L+FP++P SF ARDLIRGLLVKEP++RL RGAT
Sbjct: 140 LIFGKTPFKGSGNRATLFNVVGQPLRFPESPTASFAARDLIRGLLVKEPQHRLAVKRGAT 319
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLK 319
EIK+HPFFEG+NWALIR T PP+ K
Sbjct: 320 EIKQHPFFEGVNWALIRCTTPPDIPK 397
Score = 111 bits (237), Expect = 4e-024
Identities = 51/88 (57%), Positives = 59/88 (67%)
Frame = +2 / -2
Query: 305 AVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTA 484
++S F +SGG V RI+AQF PSKKGC LISVAP R GSFTS PLI+S A KL
Sbjct: 411 SISKGFGMSGGVVQRIRAQFTPSKKGCCLISVAPRLTAKRC*GSFTSKPLIKSLAAKLAV 232
Query: 485 GLSGNFKPCEITFESVSSLPGPLNGVLP 568
G SGN + C T + V+ LP PLNGV P
Sbjct: 231 GDSGNLRGCPTTLKRVARLPDPLNGVFP 148
>gb|DR060851.1|DR060851 RTNIT1_30_A04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_A04_A029 5', mRNA sequence
Length = 730
Score = 149 bits (321), Expect = 1e-035
Identities = 59/86 (68%), Positives = 70/86 (81%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
L++GKTPFKG GN TL NV+ Q L+FP++P SF ARDLIRGLLVKEP++RL RGAT
Sbjct: 490 LIFGKTPFKGSGNRATLFNVVGQPLRFPESPTASFAARDLIRGLLVKEPQHRLAVKRGAT 311
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLK 319
EIK+HPFFEG+NWALIR T PP+ K
Sbjct: 310 EIKQHPFFEGVNWALIRCTTPPDIPK 233
Score = 111 bits (237), Expect = 4e-024
Identities = 51/88 (57%), Positives = 59/88 (67%)
Frame = +2 / +3
Query: 305 AVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTA 484
++S F +SGG V RI+AQF PSKKGC LISVAP R GSFTS PLI+S A KL
Sbjct: 219 SISKGFGMSGGVVQRIRAQFTPSKKGCCLISVAPRLTAKRC*GSFTSKPLIKSLAAKLAV 398
Query: 485 GLSGNFKPCEITFESVSSLPGPLNGVLP 568
G SGN + C T + V+ LP PLNGV P
Sbjct: 399 GDSGNLRGCPTTLKRVARLPDPLNGVFP 482
>gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_F10_A029 5', mRNA sequence
Length = 831
Score = 149 bits (321), Expect = 1e-035
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL+NV+ Q LKFP+ P VS+ A+DLIRGLLVKEP++RL RGAT
Sbjct: 585 LLFGKTPFKGAGNTATLNNVVGQPLKFPETPVVSYAAKDLIRGLLVKEPQHRLAFKRGAT 764
Query: 396 EIKRHPFFEGLNWALIRWTAPP 331
EIK+HPFFEGLNWALIR + PP
Sbjct: 765 EIKQHPFFEGLNWALIRCSTPP 830
Score = 107 bits (228), Expect = 7e-023
Identities = 48/79 (60%), Positives = 55/79 (69%)
Frame = +2 / -3
Query: 332 GGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAGLSGNFKPC 511
GG RI+AQF+PSKKGC LISVAP +R GSFTS PLI+S A LT G+SGN + C
Sbjct: 829 GGVEQRIRAQFKPSKKGCCLISVAPRLNANRCCGSFTSKPLIKSLAA*LTTGVSGNLRGC 650
Query: 512 EITFESVSSLPGPLNGVLP 568
T SV+ LP PLNGV P
Sbjct: 649 PTTLLSVAVLPAPLNGVFP 593
>gb|CF398598.1|CF398598 RTDS3_13_D12.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_13_D12_A022 3', mRNA sequence
Length = 722
Score = 139 bits (298), Expect = 2e-032
Identities = 55/82 (67%), Positives = 65/82 (79%)
Frame = -3 / +3
Query: 555 FKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPF 376
FKG N ETL NV+ Q LKFPD+P VSF ARDLIRGLLVK+P++R+G RGATEIK+HPF
Sbjct: 3 FKGASNRETLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPF 182
Query: 375 FEGLNWALIRWTAPPETLKNID 310
F+ NWALIR T PP+ K +D
Sbjct: 183 FDSANWALIRSTTPPQIPKPVD 248
Score = 103 bits (220), Expect = 9e-022
Identities = 49/79 (62%), Positives = 54/79 (68%)
Frame = +2 / -2
Query: 320 FRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAGLSGN 499
F + GG V RI+AQF SK GC LISVAPL +P GSFTS PLI+SRA KLT G SGN
Sbjct: 238 FGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGESGN 59
Query: 500 FKPCEITFESVSSLPGPLN 556
F C TF +VS L PLN
Sbjct: 58 FNGCPTTFSNVSRLLAPLN 2
>gb|BX255099.1|BX255099 BX255099 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110G11, mRNA sequence
Length = 505
Score = 126 bits (270), Expect = 1e-028
Identities = 49/73 (67%), Positives = 59/73 (80%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
L++GKTPFKG GN TL NV+ Q L+FP++P SF ARDLIRGLLVKEP++RL RGA
Sbjct: 285 LIFGKTPFKGSGNRATLFNVVGQPLRFPESPTASFAARDLIRGLLVKEPQHRLAVKRGAN 464
Query: 396 EIKRHPFFEGLNW 358
IK+HPFFEG+NW
Sbjct: 465 *IKQHPFFEGVNW 503
>gb|BE496448.1|BE496448 NXCI_018_C03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_018_C03 5' similar to Arabidopsis
thaliana sequence At5g03640 protein kinase -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 86.3 bits (182), Expect(2) = 2e-027
Identities = 34/52 (65%), Positives = 41/52 (78%)
Frame = -3 / +2
Query: 486 PAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAPP 331
P S A+DLIRGLLVK+P R+ S+RGA EIK+HPFF G+NWALIR + PP
Sbjct: 137 PGPSAAAKDLIRGLLVKDPAKRMASARGAAEIKQHPFFRGINWALIRCSIPP 292
Score = 55.6 bits (115), Expect(2) = 2e-027
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDN 487
LLYG+TPF+GP N+ TL+NV++Q L FPD+
Sbjct: 17 LLYGRTPFRGPDNDRTLANVVAQALHFPDD 106
>gb|CF401310.1|CF401310 RTWW1_11_E11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_E11_A015 5', mRNA sequence
Length = 783
Score = 80.3 bits (169), Expect(2) = 4e-023
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = -3 / +1
Query: 468 ARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAPP 331
ARDLI+ LLVK+P RLGS+RGA +IK+HPFF+ +NWALIR PP
Sbjct: 628 ARDLIKRLLVKDPRRRLGSARGAADIKKHPFFKNINWALIRSVPPP 765
Score = 47.3 bits (97), Expect(2) = 4e-023
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFP 493
+L+G+TPFKG G + TL+N+I+ LKFP
Sbjct: 481 MLFGRTPFKGAGKDSTLTNIITHPLKFP 564
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 281,412,980
Number of Sequences: 355925
Number of extensions: 3723192
Number of successful extensions: 38627
Number of sequences better than 1.0e-020: 19
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7652573370
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)