TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643556.2.1
(1354 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF006210.1|AF006210 Pinus resinosa MADS box transcriptio... 158 1e-066
gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA,... 158 2e-066
gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus ni... 112 2e-042
gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus pota... 112 6e-041
gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus add... 112 6e-041
gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus ... 111 8e-041
gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 ... 112 8e-041
gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfu... 111 1e-040
gb|U90347.1|PRU90347 Pinus radiata putative MADS box transc... 106 4e-040
gb|BX252374.1|BX252374 BX252374 Pinus pinaster differenciat... 120 7e-040
gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control P... 119 2e-039
gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control P... 107 2e-039
gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus mi... 112 2e-038
gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed... 112 6e-038
gb|CV033324.1|CV033324 RTNACL1_33_G03.g1_A029 Roots plus ad... 112 1e-037
gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus mi... 115 1e-036
gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus ... 115 1e-036
gb|DR168055.1|DR168055 RTPHOS1_22_H02.g1_A029 Roots minus p... 119 1e-036
gb|U90346.1|PRU90346 Pinus radiata putative MADS box transc... 116 2e-036
gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine ro... 146 4e-034
gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine r... 146 4e-034
gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine r... 146 4e-034
gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pin... 146 4e-034
gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pin... 146 4e-034
gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated w... 146 4e-034
gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C fo... 146 4e-034
gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus ad... 97 5e-033
gb|CF394132.1|CF394132 RTDS2_3_D04.g1_A021 Drought-stressed... 78 3e-031
gb|CV035951.1|CV035951 RTNACL1_43_D02.g1_A029 Roots plus ad... 134 1e-030
gb|CF401468.1|CF401468 RTWW1_12_E09.g1_A015 Well-watered lo... 109 6e-030
gb|DR167777.1|DR167777 RTPHOS1_21_A12.b1_A029 Roots minus p... 132 7e-030
gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Plani... 131 1e-029
gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Plani... 131 1e-029
gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pin... 131 1e-029
gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus pota... 131 1e-029
gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated wi... 131 1e-029
gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated w... 131 1e-029
gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus add... 131 1e-029
gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus adde... 131 1e-029
gb|CX650456.1|CX650456 COLD1_45_F12.g1_A029 Root cold Pinus... 108 1e-029
gb|DR177921.1|DR177921 RTMNUT1_8_E05.b1_A029 Roots minus mi... 78 1e-029
gb|AW587800.1|AW587800 ST67B08 Pine TriplEx shoot tip libra... 130 3e-029
gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered lo... 129 3e-029
gb|U90344.1|PRU90344 Pinus radiata putative MADS box transc... 129 3e-029
gb|BG318417.1|BG318417 NXPV_013_D07_F NXPV (Nsf Xylem Plani... 129 5e-029
gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added... 129 5e-029
gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Ve... 128 7e-029
gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Ver... 128 7e-029
gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family... 128 7e-029
gb|BX249866.1|BX249866 BX249866 Pinus pinaster differenciat... 128 9e-029
gb|DR060889.1|DR060889 RTNIT1_30_D12.g1_A029 Roots minus ni... 128 9e-029
dbj|DD014347.1| Compositions and Methods for the Modificati... 128 9e-029
gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip libra... 127 1e-028
gb|AL749789.1|AL749789 AL749789 AS Pinus pinaster cDNA clon... 127 1e-028
gb|BG625803.1|BG625803 NXPV_066_C06_F NXPV (Nsf Xylem Plani... 127 1e-028
gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root w... 127 1e-028
gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root w... 127 1e-028
gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS... 127 1e-028
emb|Y09611.1|PRMADS1 P.resinosa mRNA for MADS-box protein 126 3e-028
gb|AW754659.1|AW754659 PC04G10 Pine TriplEx pollen cone lib... 125 6e-028
gb|U90348.1|PRU90348 Pinus radiata putative MADS box transc... 125 8e-028
gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip libra... 113 1e-027
gb|BF778396.1|BF778396 NXSI_082_G07_F NXSI (Nsf Xylem Side ... 122 8e-027
gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control P... 112 9e-027
gb|BG040082.1|BG040082 NXSI_106_C09_F NXSI (Nsf Xylem Side ... 121 1e-026
gb|CO201026.1|CO201026 RTCNT2_3_D12.b1_A029 Root control 2 ... 78 3e-026
gb|CF476348.1|CF476348 RTWW2_22_G12.g1_A021 Well-watered lo... 118 1e-025
gb|AA556486.1|AA556486 341 Loblolly pine C Pinus taeda cDNA... 117 1e-025
gb|DR081124.1|DR081124 RTFEPL1_27_C11.g1_A029 Roots plus ad... 117 1e-025
gb|U42399.1|PRU42399 Pinus radiata putative MADS-box family... 116 3e-025
gb|BE187247.1|BE187247 NXNV_76_C05_F Nsf Xylem Normal wood ... 116 3e-025
gb|CF392697.1|CF392697 RTDR3_5_H09.g1_A022 Loblolly pine ro... 116 5e-025
gb|CF477439.1|CF477439 RTWW3_7_F06.g1_A022 Well-watered lob... 116 5e-025
gb|CF665739.1|CF665739 RTCNT1_18_D05.b1_A029 Root control P... 116 5e-025
gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism... 112 5e-025
gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism... 112 5e-025
gb|AW981881.1|AW981881 PC19G08 Pine TriplEx pollen cone lib... 114 1e-024
gb|CF399403.1|CF399403 RTDS3_28_D02.g1_A022 Drought-stresse... 114 1e-024
gb|CO157702.1|CO157702 FLD1_1_B06.g1_A029 Root flooded Pinu... 113 3e-024
gb|CO367965.1|CO367965 RTK1_37_F12.g1_A029 Roots minus pota... 113 3e-024
gb|DR072089.1|DR072089 RTDK1_24_B10.b1_A029 Roots, dark Pin... 113 3e-024
gb|DR072321.1|DR072321 RTDK1_25_B07.g1_A029 Roots, dark Pin... 113 3e-024
gb|DR178023.1|DR178023 RTMNUT1_8_F12.g1_A029 Roots minus mi... 113 3e-024
gb|CF388230.1|CF388230 RTDR2_1_D05.g1_A021 Loblolly pine ro... 112 4e-024
gb|DR112977.1|DR112977 RTS1_32_C04.b1_A029 Roots minus sulf... 111 8e-024
gb|CO365540.1|CO365540 RTK1_17_D10.g1_A029 Roots minus pota... 111 1e-023
gb|CX650850.1|CX650850 COLD1_48_B09.g1_A029 Root cold Pinus... 111 1e-023
gb|DR167232.1|DR167232 RTPHOS1_17_B11.g1_A029 Roots minus p... 111 1e-023
gb|CO363306.1|CO363306 RTK1_8_H10.g1_A029 Roots minus potas... 111 2e-023
gb|DR051726.1|DR051726 RTBOR1_32_A11.b1_A029 Roots plus add... 111 2e-023
gb|DR051801.1|DR051801 RTBOR1_32_A11.g1_A029 Roots plus add... 111 2e-023
gb|BE451798.1|BE451798 NXCI_002_D03_F NXCI (Nsf Xylem Compr... 110 2e-023
gb|BF517018.1|BF517018 NXSI_008_C03_F NXSI (Nsf Xylem Side ... 110 2e-023
gb|BI643995.1|BI643995 NXPV_133_H06_F NXPV (Nsf Xylem Plani... 110 2e-023
gb|U90349.1|PRU90349 Pinus radiata putative MADS box transc... 110 2e-023
gb|CF398147.1|CF398147 RTDS3_21_G07.b1_A022 Drought-stresse... 79 2e-023
gb|CO170901.1|CO170901 NDL1_17_E10.g1_A029 Needles control ... 110 3e-023
gb|DR012819.1|DR012819 HEAT1_15_E08.b1_A029 Root at 37 C fo... 110 3e-023
gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control ... 108 1e-022
gb|BF220652.1|BF220652 NXCI_151_A10_F NXCI (Nsf Xylem Compr... 107 2e-022
gb|CF476374.1|CF476374 RTWW2_22_E12.g1_A021 Well-watered lo... 107 2e-022
gb|CO197079.1|CO197079 GEO1_3_F06.g1_A029 Root gravitropism... 107 2e-022
gb|DR071153.1|DR071153 RTDK1_18_A09.b1_A029 Roots, dark Pin... 91 3e-022
gb|DR069454.1|DR069454 RTDK1_7_H04.b1_A029 Roots, dark Pinu... 106 3e-022
gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus adde... 105 5e-022
gb|U90345.1|PRU90345 Pinus radiata putative MADS box transc... 105 5e-022
gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late ... 104 1e-021
gb|BE644116.1|BE644116 NXCI_054_F11_F NXCI (Nsf Xylem Compr... 103 3e-021
gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2... 103 3e-021
gb|AW985380.1|AW985380 NXNV_134_G01_F Nsf Xylem Normal wood... 102 7e-021
gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine r... 102 7e-021
gb|AF120097.1|AF120097 Pinus radiata DEF/GLO-like protein (... 102 7e-021
gb|CX715901.1|CX715901 RTPQ1_37_G08.g1_A032 Roots treated w... 101 9e-021
gb|DR069761.1|DR069761 RTDK1_9_F10.b1_A029 Roots, dark Pinu... 101 9e-021
gb|DR742217.1|DR742217 RTCU1_2_C05.g1_A029 Roots plus added... 101 9e-021
>gb|AF006210.1|AF006210 Pinus resinosa MADS box transcription factor mRNA, complete cds
Length = 1726
Score = 158 bits (340), Expect(2) = 1e-066
Identities = 67/76 (88%), Positives = 71/76 (93%)
Frame = +3 / +1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYE+AN+S
Sbjct: 478 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANHS 657
Query: 429 VKGTIERYKKATSDNS 476
VK TIERYKK DN+
Sbjct: 658 VKRTIERYKKTCVDNN 705
Score = 116 bits (247), Expect(2) = 1e-066
Identities = 49/111 (44%), Positives = 77/111 (69%)
Frame = +3 / +1
Query: 456 KATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLET 635
K T +++ G I+E Q+++QE+ +LRQQI LQN+NR L+GD +T ++ KELK LE
Sbjct: 682 KKTCVDNNHGGAISESNSQYWQQEAGKLRQQIEILQNANRHLMGDGLTALNIKELKQLEV 861
Query: 636 RLDKALGKIRAKKNDVLCSEVEYMQRREMELQNDNLYLRSRVDENERAQQT 788
RL+K + ++R+KKN++L E++ MQRRE L +N LRS++ E + + T
Sbjct: 862 RLEKGISRVRSKKNEMLLEEIDIMQRREHILIQENEILRSKIAECQNSHNT 1014
Score = 70.7 bits (148), Expect(2) = 5e-025
Identities = 36/71 (50%), Positives = 40/71 (56%)
Frame = -1 / -3
Query: 472 LSLVAFLYLSMVPFTLLLAYS*RRPRLEKXXXXXXXXXXXXXXXAFLRRPLRRLQKVTCL 293
LS FLYLS+V FTL LA S* P LEK AF +P RRLQKVTC
Sbjct: 701 LSTQVFLYLSIVLFTLWLANS*SLPLLEKTMRATSASQRTDNSYAFFNKPFRRLQKVTCR 522
Query: 292 LVVFSMRLISV 260
VVFS+ IS+
Sbjct: 521 FVVFSILFISI 489
Score = 64.8 bits (135), Expect(2) = 5e-025
Identities = 32/77 (41%), Positives = 48/77 (62%)
Frame = -3 / -2
Query: 719 FPSLHVLDFRTQHIVLFCSNLSESFV*PSLQVLKFLVAHGCDRITYQGPVGVLQVNDLLP 540
FPSLH +D QH+VLF S ++SF +L++L+FL C +T+Q P+ +LQ +LL
Sbjct: 945 FPSLHDVDLFKQHLVLFGSYSADSFFKSNLKLLEFLDVQSCKPVTHQMPICILQNFNLLS 766
Query: 539 QPSRFLLVMLNGDLCNR 489
+ + LL +L L NR
Sbjct: 765 EFTSLLLPILRIGL*NR 715
>gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA, complete cds
Length = 922
Score = 158 bits (340), Expect(2) = 2e-066
Identities = 67/76 (88%), Positives = 71/76 (93%)
Frame = +3 / +2
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYE+AN+S
Sbjct: 17 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANHS 196
Query: 429 VKGTIERYKKATSDNS 476
VK TIERYKK DN+
Sbjct: 197 VKRTIERYKKTCVDNN 244
Score = 115 bits (246), Expect(2) = 2e-066
Identities = 49/111 (44%), Positives = 77/111 (69%)
Frame = +3 / +2
Query: 456 KATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLET 635
K T +++ G I+E Q+++QE+ +LRQQI LQN+NR L+GD +T ++ KELK LE
Sbjct: 221 KKTCVDNNHGGAISESNSQYWQQEAGKLRQQIDILQNANRHLMGDGLTALNIKELKQLEV 400
Query: 636 RLDKALGKIRAKKNDVLCSEVEYMQRREMELQNDNLYLRSRVDENERAQQT 788
RL+K + ++R+KKN++L E++ MQRRE L +N LRS++ E + + T
Sbjct: 401 RLEKGISRVRSKKNEMLLEEIDIMQRREHILIQENEILRSKIAECQNSHNT 553
Score = 70.7 bits (148), Expect(2) = 7e-025
Identities = 36/71 (50%), Positives = 40/71 (56%)
Frame = -1 / -2
Query: 472 LSLVAFLYLSMVPFTLLLAYS*RRPRLEKXXXXXXXXXXXXXXXAFLRRPLRRLQKVTCL 293
LS FLYLS+V FTL LA S* P LEK AF +P RRLQKVTC
Sbjct: 240 LSTQVFLYLSIVLFTLWLANS*SLPLLEKTMRATSASQRTDNSYAFFNKPFRRLQKVTCR 61
Query: 292 LVVFSMRLISV 260
VVFS+ IS+
Sbjct: 60 FVVFSILFISI 28
Score = 64.3 bits (134), Expect(2) = 7e-025
Identities = 34/89 (38%), Positives = 52/89 (58%)
Frame = -3 / -1
Query: 719 FPSLHVLDFRTQHIVLFCSNLSESFV*PSLQVLKFLVAHGCDRITYQGPVGVLQVNDLLP 540
FPSLH +D QH+VLF S+ ++SF +L++L+FL C +T+Q P+ +LQ +LL
Sbjct: 484 FPSLHDVDLFKQHLVLFGSHSADSFFKSNLKLLEFLNVQSCKPVTHQMPICILQNVNLLS 305
Query: 539 QPSRFLLVMLNGDLCNRTSCAGVVTGCLL 453
+ + LL +L L R S V L+
Sbjct: 304 EFTSLLLPILRIGL*YRPSVVVVNASLLV 218
>gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_F11_A029 5', mRNA sequence
Length = 795
Score = 112 bits (239), Expect(3) = 2e-042
Identities = 45/60 (75%), Positives = 54/60 (90%)
Frame = +3 / +3
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIK+IEN+ +RQVTFCKRR GL+KKAYELSVLCDA+VALIVFSSRG+LYE ++
Sbjct: 204 GRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTSN 383
Score = 76.7 bits (161), Expect(3) = 2e-042
Identities = 30/94 (31%), Positives = 64/94 (68%)
Frame = +3 / +3
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G+ + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 486 KQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELNQLESRLQRGINQVRAKKHELMLDEI 665
Query: 699 EYMQRREMELQNDNLYLRSRVDENERAQQTANMM 800
+Q +E L+ +N+ L+ +++E ++ ++++
Sbjct: 666 RALQSKEHTLRINNMMLQEKLEECTNGKRLSSLL 767
Score = 23.1 bits (44), Expect(3) = 2e-042
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3 / +3
Query: 420 NNSVKGTIERYKKAT 464
NNS++ +ERY+K +
Sbjct: 390 NNSMRSILERYQKCS 434
>gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_D10_A029 3', mRNA sequence
Length = 867
Score = 112 bits (239), Expect(2) = 6e-041
Identities = 45/60 (75%), Positives = 54/60 (90%)
Frame = +3 / -2
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIK+IEN+ +RQVTFCKRR GL+KKAYELSVLCDA+VALIVFSSRG+LYE ++
Sbjct: 644 GRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTSN 465
Score = 76.7 bits (161), Expect(2) = 6e-041
Identities = 30/94 (31%), Positives = 64/94 (68%)
Frame = +3 / -2
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G+ + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 359 KQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELNQLESRLQRGINQVRAKKHELMLDEI 180
Query: 699 EYMQRREMELQNDNLYLRSRVDENERAQQTANMM 800
+Q +E L+ +N+ L+ +++E ++ ++++
Sbjct: 179 RALQSKEHTLRINNMMLQEKLEECTNGKRLSSLL 78
>gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_3_B05_A029 5', mRNA sequence
Length = 851
Score = 112 bits (239), Expect(2) = 6e-041
Identities = 45/60 (75%), Positives = 54/60 (90%)
Frame = +3 / +2
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIK+IEN+ +RQVTFCKRR GL+KKAYELSVLCDA+VALIVFSSRG+LYE ++
Sbjct: 182 GRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTSN 361
Score = 76.7 bits (161), Expect(2) = 6e-041
Identities = 30/94 (31%), Positives = 64/94 (68%)
Frame = +3 / +2
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G+ + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 467 KQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELNQLESRLQRGINQVRAKKHELMLDEI 646
Query: 699 EYMQRREMELQNDNLYLRSRVDENERAQQTANMM 800
+Q +E L+ +N+ L+ +++E ++ ++++
Sbjct: 647 RALQSKEHTLRINNMMLQEKLEECTNGKRLSSLL 748
>gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_1_H11_A029 3', mRNA sequence
Length = 793
Score = 111 bits (236), Expect(2) = 8e-041
Identities = 45/55 (81%), Positives = 52/55 (94%)
Frame = +3 / -3
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYE 413
G+GK EIK+IEN+ +RQVTFCKRR GL+KKA+ELSVLCDAEVALIVFSSRG+LYE
Sbjct: 611 GRGKIEIKKIENSVHRQVTFCKRRGGLMKKAHELSVLCDAEVALIVFSSRGKLYE 447
Score = 77.6 bits (163), Expect(2) = 8e-041
Identities = 31/94 (32%), Positives = 64/94 (68%)
Frame = +3 / -3
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G+ + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 329 KQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEI 150
Query: 699 EYMQRREMELQNDNLYLRSRVDENERAQQTANMM 800
+Q +E L+ +N+ L+ R++E ++ ++++
Sbjct: 149 RALQSKEHTLRINNMMLQERLEECTNGKRLSSLL 48
>gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_3_D12_A029 5', mRNA sequence
Length = 758
Score = 112 bits (239), Expect(2) = 8e-041
Identities = 45/60 (75%), Positives = 54/60 (90%)
Frame = +3 / +1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIK+IEN+ +RQVTFCKRR GL+KKAYELSVLCDA+VALIVFSSRG+LYE ++
Sbjct: 196 GRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTSN 375
Score = 76.2 bits (160), Expect(2) = 8e-041
Identities = 31/83 (37%), Positives = 58/83 (69%)
Frame = +3 / +1
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G+ + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 481 KQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEI 660
Query: 699 EYMQRREMELQNDNLYLRSRVDE 767
+Q +E L+ +N+ L+ R++E
Sbjct: 661 RALQSKEHTLRINNMMLQERLEE 729
>gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_G12_A029 5', mRNA sequence
Length = 826
Score = 111 bits (236), Expect(2) = 1e-040
Identities = 45/55 (81%), Positives = 52/55 (94%)
Frame = +3 / +3
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYE 413
G+GK EIK+IEN+ +RQVTFCKRR GL+KKA+ELSVLCDAEVALIVFSSRG+LYE
Sbjct: 189 GRGKIEIKKIENSVHRQVTFCKRRGGLMKKAHELSVLCDAEVALIVFSSRGKLYE 353
Score = 76.7 bits (161), Expect(2) = 1e-040
Identities = 30/94 (31%), Positives = 64/94 (68%)
Frame = +3 / +3
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G+ + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 474 KQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELNQLESRLQRGINQVRAKKHELMLDEI 653
Query: 699 EYMQRREMELQNDNLYLRSRVDENERAQQTANMM 800
+Q +E L+ +N+ L+ +++E ++ ++++
Sbjct: 654 RALQSKEHTLRINNMMLQEKLEECTNGKRLSSLL 755
>gb|U90347.1|PRU90347 Pinus radiata putative MADS box transcription factor PrMADS6 mRNA,
complete cds
Length = 993
Score = 106 bits (227), Expect(2) = 4e-040
Identities = 40/78 (51%), Positives = 63/78 (80%)
Frame = +3 / +3
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++++IE+ T+RQVTF KRRNGLLKKAYE+SVLCDA++ LIVFS RG++YE+++ +
Sbjct: 81 RGKTQMRKIESATSRQVTFSKRRNGLLKKAYEMSVLCDAQLGLIVFSPRGKVYEFSSTCM 260
Query: 432 KGTIERYKKATSDNSSAA 485
+ + RY+ + + + +
Sbjct: 261 QKMLARYENFSEGSKATS 314
Score = 79.4 bits (167), Expect(2) = 4e-040
Identities = 30/95 (31%), Positives = 61/95 (64%)
Frame = +3 / +3
Query: 465 SDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLD 644
S+ S A T E +Q K++ A + ++I L++ +R ++GD + + + K+L LE++++
Sbjct: 291 SEGSKATSTAKEQDVQGLKRQIANMEERIEILESMHRKMLGDELASCALKDLNELESQVE 470
Query: 645 KALGKIRAKKNDVLCSEVEYMQRREMELQNDNLYL 749
+ L +RA+K ++L +E+E +QR+E L +N +L
Sbjct: 471 RGLRNVRARKTEILVTEIEQLQRKEWILSEENAFL 575
>gb|BX252374.1|BX252374 BX252374 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP063E09 similar to AGAMOUS LIKE MADS BOX
PROTEIN, mRNA sequence
Length = 674
Score = 120 bits (257), Expect(2) = 7e-040
Identities = 48/73 (65%), Positives = 63/73 (86%)
Frame = +3 / +3
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++K+IEN T+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+++ +
Sbjct: 144 RGKTQMKKIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFSSRCM 323
Query: 432 KGTIERYKKATSD 470
+ +ERY+K + +
Sbjct: 324 QKMLERYQKYSEE 362
Score = 64.8 bits (135), Expect(2) = 7e-040
Identities = 30/98 (30%), Positives = 56/98 (57%)
Frame = +3 / +3
Query: 465 SDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLD 644
S+ T E IQ K+E A +++I L+ + R ++G+ + + S KEL LE++ D
Sbjct: 354 SEEFDINNTTKEHDIQDIKRELADKKEKISILELTQRKMLGEDLESCSMKELNQLESQAD 533
Query: 645 KALGKIRAKKNDVLCSEVEYMQRREMELQNDNLYLRSR 758
+ L IRA+ +L E++ ++ +E + +NL+LR +
Sbjct: 534 RGLKHIRARLTKMLVDEIDQLKWKERIVTEENLFLRKK 647
>gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_A05_A029 5', mRNA sequence
Length = 753
Score = 119 bits (255), Expect(2) = 2e-039
Identities = 47/74 (63%), Positives = 66/74 (89%)
Frame = +3 / +3
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT+++RIEN T+RQVTF KRRNGLLKKAYELSVLCDAEVALIVFS RG+++E+A+ S+
Sbjct: 279 RGKTQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSPRGKVHEFASPSM 458
Query: 432 KGTIERYKKATSDN 473
+ +++Y+K + ++
Sbjct: 459 QRVLDKYQKYSQES 500
Score = 64.3 bits (134), Expect(2) = 2e-039
Identities = 26/88 (29%), Positives = 52/88 (59%)
Frame = +3 / +3
Query: 465 SDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLD 644
S S + E QH K E A++ +++ L+++ R ++G+ + + S KEL LE++ +
Sbjct: 489 SQESGISDRTKEKNTQHLKGEIAQMEERVNILESAQRKMLGEDLASCSMKELNQLESQAE 668
Query: 645 KALGKIRAKKNDVLCSEVEYMQRREMEL 728
+ L +IRA+K ++L + E ++ +E L
Sbjct: 669 RGLNRIRARKTEILMDQREQLKSKERML 752
>gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_B11_A029 5', mRNA sequence
Length = 788
Score = 107 bits (228), Expect(2) = 2e-039
Identities = 43/60 (71%), Positives = 52/60 (86%)
Frame = +3 / +2
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK +IK+IEN+ +RQVTFCKRR GL+KKAYELSVLCDAEVALIVFS G+LYE ++
Sbjct: 47 GRGKIQIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDAEVALIVFSGGGKLYELGTSN 226
Score = 76.2 bits (160), Expect(2) = 2e-039
Identities = 31/94 (32%), Positives = 63/94 (67%)
Frame = +3 / +2
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 329 KQEINLLKQQIDQLKLTNRYLMGKGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEI 508
Query: 699 EYMQRREMELQNDNLYLRSRVDENERAQQTANMM 800
+Q +E L+ +N+ L+ R++E ++ ++++
Sbjct: 509 RALQSKEHTLRINNMMLQERLEECTNGKRLSSLL 610
>gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_E05_A029 5', mRNA sequence
Length = 779
Score = 112 bits (239), Expect(2) = 2e-038
Identities = 45/60 (75%), Positives = 54/60 (90%)
Frame = +3 / +1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIK+IEN+ +RQVTFCKRR GL+KKAYELSVLCDA+VALIVFSSRG+LYE ++
Sbjct: 268 GRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTSN 447
Score = 68.4 bits (143), Expect(2) = 2e-038
Identities = 28/75 (37%), Positives = 52/75 (69%)
Frame = +3 / +1
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G+ + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 553 KQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEI 732
Query: 699 EYMQRREMELQNDNL 743
+Q +E L+ +N+
Sbjct: 733 RALQSKEHTLRINNM 777
>gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_D04_A021 3', mRNA sequence
Length = 611
Score = 112 bits (239), Expect(3) = 6e-038
Identities = 45/60 (75%), Positives = 54/60 (90%)
Frame = +3 / -3
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIK+IEN+ +RQVTFCKRR GL+KKAYELSVLCDA+VALIVFSSRG+LYE ++
Sbjct: 474 GRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTSN 295
Score = 61.6 bits (128), Expect(3) = 6e-038
Identities = 25/64 (39%), Positives = 45/64 (70%)
Frame = +3 / -3
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G+ + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 192 KQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLXRGINQVRAKKHELMLDEI 13
Query: 699 EYMQ 710
+Q
Sbjct: 12 RALQ 1
Score = 23.1 bits (44), Expect(3) = 6e-038
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3 / -3
Query: 420 NNSVKGTIERYKKAT 464
NNS++ +ERY+K +
Sbjct: 288 NNSMRSILERYQKCS 244
>gb|CV033324.1|CV033324 RTNACL1_33_G03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_33_G03_A029 5', mRNA sequence
Length = 796
Score = 112 bits (240), Expect(2) = 1e-037
Identities = 47/69 (68%), Positives = 58/69 (84%)
Frame = +3 / +1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+ + E++RI+N + R+VTF RRNGLLKKAYELSVLCDAEVA+IVFSSRG+LY + + S
Sbjct: 172 GRRRIELRRIDNASTRRVTFSTRRNGLLKKAYELSVLCDAEVAVIVFSSRGKLYGFGSKS 351
Query: 429 VKGTIERYK 455
V TIERYK
Sbjct: 352 VCRTIERYK 378
Score = 65.2 bits (136), Expect(2) = 1e-037
Identities = 29/95 (30%), Positives = 58/95 (61%)
Frame = +3 / +1
Query: 492 IAEVTIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAK 671
I E +++ + +L+++I L N +R L+GDSI+++S KEL LE RL++ + IR +
Sbjct: 412 ITEPSLERCGNDITKLKKEIDILTNKSRKLMGDSISSLSMKELDELELRLERGIDCIRLQ 591
Query: 672 KNDVLCSEVEYMQRREMELQNDNLYLRSRVDENER 776
K+ + E + ++ E L +N +LR+++ ++
Sbjct: 592 KDRIFVQENQTAKKLEEALIVENQFLRTKIGRYQK 696
>gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_H10_A029 5', mRNA sequence
Length = 770
Score = 115 bits (246), Expect(2) = 1e-036
Identities = 47/68 (69%), Positives = 59/68 (86%)
Frame = +3 / +3
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIEN T+RQVT KRRNGLLKKAYELSVLCDAEV LIVFS G+LYE+A+ S+
Sbjct: 186 RGKTQMKRIENPTSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKLYEFASTSM 365
Query: 432 KGTIERYK 455
+ +E+Y+
Sbjct: 366 QKLLEKYE 389
Score = 58.8 bits (122), Expect(2) = 1e-036
Identities = 25/83 (30%), Positives = 48/83 (57%)
Frame = +3 / +3
Query: 510 QHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLC 689
Q KQE + +++ LQ++ R + G+ + S KEL LE ++++ L ++RA K VL
Sbjct: 441 QCLKQEIENMEKRVRILQSTQRKMSGEGLALCSIKELNQLEGQVERGLNRVRATKTKVLV 620
Query: 690 SEVEYMQRREMELQNDNLYLRSR 758
E+E ++++E L+ + L +
Sbjct: 621 DEIEKLKQKEHVLREEKALLHKK 689
>gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_5_D01_A029 5', mRNA sequence
Length = 705
Score = 115 bits (246), Expect(2) = 1e-036
Identities = 47/68 (69%), Positives = 59/68 (86%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIEN T+RQVT KRRNGLLKKAYELSVLCDAEV LIVFS G+LYE+A+ S+
Sbjct: 173 RGKTQMKRIENPTSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKLYEFASTSM 352
Query: 432 KGTIERYK 455
+ +E+Y+
Sbjct: 353 QKLLEKYE 376
Score = 58.8 bits (122), Expect(2) = 1e-036
Identities = 25/83 (30%), Positives = 48/83 (57%)
Frame = +3 / +2
Query: 510 QHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLC 689
Q KQE + +++ LQ++ R + G+ + S KEL LE ++++ L ++RA K VL
Sbjct: 428 QCLKQEIENMEKRVRILQSTQRKMSGEGLALCSIKELNQLEGQVERGLNRVRATKTKVLV 607
Query: 690 SEVEYMQRREMELQNDNLYLRSR 758
E+E ++++E L+ + L +
Sbjct: 608 DEIEKLKQKEHVLREEKALLHKK 676
>gb|DR168055.1|DR168055 RTPHOS1_22_H02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_22_H02_A029 5', mRNA sequence
Length = 662
Score = 119 bits (255), Expect(2) = 1e-036
Identities = 47/74 (63%), Positives = 66/74 (89%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT+++RIEN T+RQVTF KRRNGLLKKAYELSVLCDAEVALIVFS RG+++E+A+ S+
Sbjct: 53 RGKTQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSPRGKVHEFASPSM 232
Query: 432 KGTIERYKKATSDN 473
+ +++Y+K + ++
Sbjct: 233 QRVLDKYQKYSQES 274
Score = 54.7 bits (113), Expect(2) = 1e-036
Identities = 22/70 (31%), Positives = 42/70 (60%)
Frame = +3 / +2
Query: 465 SDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLD 644
S S + E QH K E A++ +++ L+++ R ++G+ + + S KEL LE++ +
Sbjct: 263 SQESGISDRTKEKNTQHLKGEIAQMEERVNILESAQRKMLGEDLASCSMKELNQLESQAE 442
Query: 645 KALGKIRAKK 674
+ L +IRA+K
Sbjct: 443 RGLNRIRARK 472
>gb|U90346.1|PRU90346 Pinus radiata putative MADS box transcription factor PrMADS5 mRNA,
complete cds
Length = 1301
Score = 116 bits (247), Expect(2) = 2e-036
Identities = 47/68 (69%), Positives = 59/68 (86%)
Frame = +3 / +1
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIEN T+RQVT KRRNGLLKKAYELSVLCDAEV LIVFS G+LYE+A+ S+
Sbjct: 175 RGKTQMKRIENATSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKLYEFASTSM 354
Query: 432 KGTIERYK 455
+ +E+Y+
Sbjct: 355 QKLLEKYE 378
Score = 57.4 bits (119), Expect(2) = 2e-036
Identities = 24/83 (28%), Positives = 47/83 (56%)
Frame = +3 / +1
Query: 510 QHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLC 689
Q KQE + +++ LQ++ R ++G+ + S KEL LE ++++ L +RA K VL
Sbjct: 430 QCLKQEIENMEKRVRILQSTQRKMLGEGLALCSIKELNQLEGQVERGLNHVRATKTKVLL 609
Query: 690 SEVEYMQRREMELQNDNLYLRSR 758
E+E ++++E + + L +
Sbjct: 610 DEIEKLKQKEHVFREEKALLHKK 678
>gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_D05_A021 3', mRNA
sequence
Length = 532
Score = 146 bits (313), Expect = 4e-034
Identities = 65/108 (60%), Positives = 79/108 (73%)
Frame = +3 / -1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIKRIENTTNRQVTF KRRNGLLKKAYELSVLCDAEVA+I+FS+RG+LYE+AN S
Sbjct: 430 GRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEFANKS 251
Query: 429 VKGTIERYKKATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSN 572
V TIERYKK + + + + ++ +QE L + NL N
Sbjct: 250 VNRTIERYKKVCAKDMRWETSTSSKNCENLRQEIDILTKVNRNLMGDN 107
>gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_11_B08_A021 3', mRNA
sequence
Length = 685
Score = 146 bits (313), Expect = 4e-034
Identities = 65/108 (60%), Positives = 79/108 (73%)
Frame = +3 / -1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIKRIENTTNRQVTF KRRNGLLKKAYELSVLCDAEVA+I+FS+RG+LYE+AN S
Sbjct: 493 GRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEFANKS 314
Query: 429 VKGTIERYKKATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSN 572
V TIERYKK + + + + ++ +QE L + NL N
Sbjct: 313 VNRTIERYKKVCAKDMRWETSTSSKNCENLRQEIDILTKVNRNLMGDN 170
>gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_11_B08_A021 5', mRNA
sequence
Length = 791
Score = 146 bits (313), Expect = 4e-034
Identities = 65/108 (60%), Positives = 79/108 (73%)
Frame = +3 / -1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIKRIENTTNRQVTF KRRNGLLKKAYELSVLCDAEVA+I+FS+RG+LYE+AN S
Sbjct: 776 GRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEFANKS 597
Query: 429 VKGTIERYKKATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSN 572
V TIERYKK + + + + ++ +QE L + NL N
Sbjct: 596 VNRTIERYKKVCAKDMRWETSTSSKNCENLRQEIDILTKVNRNLMGDN 453
>gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_F09_A029 3', mRNA sequence
Length = 896
Score = 146 bits (313), Expect = 4e-034
Identities = 65/108 (60%), Positives = 79/108 (73%)
Frame = +3 / +1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIKRIENTTNRQVTF KRRNGLLKKAYELSVLCDAEVA+I+FS+RG+LYE+AN S
Sbjct: 190 GRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEFANKS 369
Query: 429 VKGTIERYKKATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSN 572
V TIERYKK + + + + ++ +QE L + NL N
Sbjct: 370 VNRTIERYKKVCAKDMRWETSTSSKNCENLRQEIDILTKVNRNLMGDN 513
>gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_F09_A029 5', mRNA sequence
Length = 909
Score = 146 bits (313), Expect = 4e-034
Identities = 65/108 (60%), Positives = 79/108 (73%)
Frame = +3 / +1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIKRIENTTNRQVTF KRRNGLLKKAYELSVLCDAEVA+I+FS+RG+LYE+AN S
Sbjct: 193 GRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEFANKS 372
Query: 429 VKGTIERYKKATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSN 572
V TIERYKK + + + + ++ +QE L + NL N
Sbjct: 373 VNRTIERYKKVCAKDMRWETSTSSKNCENLRQEIDILTKVNRNLMGDN 516
>gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_F12_A032 3', mRNA sequence
Length = 586
Score = 146 bits (313), Expect = 4e-034
Identities = 65/108 (60%), Positives = 79/108 (73%)
Frame = +3 / -3
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIKRIENTTNRQVTF KRRNGLLKKAYELSVLCDAEVA+I+FS+RG+LYE+AN S
Sbjct: 479 GRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEFANKS 300
Query: 429 VKGTIERYKKATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSN 572
V TIERYKK + + + + ++ +QE L + NL N
Sbjct: 299 VNRTIERYKKVCAKDMRWETSTSSKNCENLRQEIDILTKVNRNLMGDN 156
>gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_D05_A029 3', mRNA sequence
Length = 705
Score = 146 bits (313), Expect = 4e-034
Identities = 65/108 (60%), Positives = 79/108 (73%)
Frame = +3 / -1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIKRIENTTNRQVTF KRRNGLLKKAYELSVLCDAEVA+I+FS+RG+LYE+AN S
Sbjct: 558 GRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEFANKS 379
Query: 429 VKGTIERYKKATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSN 572
V TIERYKK + + + + ++ +QE L + NL N
Sbjct: 378 VNRTIERYKKVCAKDMRWETSTSSKNCENLRQEIDILTKVNRNLMGDN 235
>gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_33_G03_A029 3', mRNA sequence
Length = 839
Score = 97.3 bits (206), Expect(2) = 5e-033
Identities = 42/54 (77%), Positives = 47/54 (87%)
Frame = +3 / +1
Query: 294 RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKGTIERYK 455
R+VTF RRNGLLKKAYELSVLCDAEVA+IVFSSRG+LY + + SV TIERYK
Sbjct: 1 RRVTFSTRRNGLLKKAYELSVLCDAEVAVIVFSSRGKLYGFGSKSVCRTIERYK 162
Score = 65.2 bits (136), Expect(2) = 5e-033
Identities = 29/95 (30%), Positives = 58/95 (61%)
Frame = +3 / +1
Query: 492 IAEVTIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAK 671
I E +++ + +L+++I L N +R L+GDSI+++S KEL LE RL++ + IR +
Sbjct: 196 ITEPSLERCGNDITKLKKEIDILTNKSRKLMGDSISSLSMKELDELELRLERGIDCIRLQ 375
Query: 672 KNDVLCSEVEYMQRREMELQNDNLYLRSRVDENER 776
K+ + E + ++ E L +N +LR+++ ++
Sbjct: 376 KDRIFVQENQTAKKLEEALIVENQFLRTKIGRYQK 480
>gb|CF394132.1|CF394132 RTDS2_3_D04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_D04_A021 5', mRNA sequence
Length = 761
Score = 77.6 bits (163), Expect(3) = 3e-031
Identities = 31/94 (32%), Positives = 64/94 (68%)
Frame = +3 / -3
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G+ + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 540 KQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEI 361
Query: 699 EYMQRREMELQNDNLYLRSRVDENERAQQTANMM 800
+Q +E L+ +N+ L+ R++E ++ ++++
Sbjct: 360 RALQSKEHTLRINNMMLQERLEECTNGKRLSSLL 259
Score = 73.5 bits (154), Expect(3) = 3e-031
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +3 / -3
Query: 312 KRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
KRR GL+KKAYELSVLCDA+VALIVFSSRG+LYE ++
Sbjct: 759 KRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTSN 643
Score = 23.1 bits (44), Expect(3) = 3e-031
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3 / -3
Query: 420 NNSVKGTIERYKKAT 464
NNS++ +ERY+K +
Sbjct: 636 NNSMRSILERYQKCS 592
>gb|CV035951.1|CV035951 RTNACL1_43_D02.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_43_D02_A029 5', mRNA sequence
Length = 860
Score = 134 bits (288), Expect = 1e-030
Identities = 59/171 (34%), Positives = 106/171 (61%)
Frame = +3 / +3
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
GK K E+KRI+N + RQVTF KR+NGLLKKA+ELSVLCDAEVALI+FS G++ E+A++
Sbjct: 9 GKTKMEMKRIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSETGKICEFASHD 188
Query: 429 VKGTIERYKKATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSNRALIGDSITTMS 608
TI + ++ + + +++ + + LR+++ L+ R ++G+ + +++
Sbjct: 189 DMATILEKYRIYTETDGNMESSSVQSVKIRESQLKALREKMNKLKKKERNMVGEDLDSLT 368
Query: 609 HKELKHLETRLDKALGKIRAKKNDVLCSEVEYMQRREMELQNDNLYLRSRV 761
KEL+ LE +L + +I KK +L + + ++ L+ + + L +++
Sbjct: 369 MKELQRLENQLQIGIKRISDKKMKILVQSSKLLLQKVRALEEEKIELETKL 521
>gb|CF401468.1|CF401468 RTWW1_12_E09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_12_E09_A015 5', mRNA sequence
Length = 811
Score = 109 bits (233), Expect(2) = 6e-030
Identities = 42/73 (57%), Positives = 62/73 (84%)
Frame = +3 / +3
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+G+ +++ IEN NRQVTF KRR+GL+KKA ELS+LCDAEVA+IVFSS G+LYE++++S
Sbjct: 36 GRGRVQLRMIENKINRQVTFSKRRSGLMKKASELSILCDAEVAMIVFSSTGKLYEFSSSS 215
Query: 429 VKGTIERYKKATS 467
+ +ER++K ++
Sbjct: 216 MTKILERHRKCST 254
Score = 42.3 bits (86), Expect(2) = 6e-030
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +3 / +3
Query: 510 QHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVL 686
Q E L+++ NLQ R ++G+ + +S KEL+ LE +L++ L +++ KK L
Sbjct: 282 QDSNTELTELKRKTDNLQRWRRHVMGEDLDQLSVKELQQLEQQLEEGLKQVKLKKEQQL 458
>gb|DR167777.1|DR167777 RTPHOS1_21_A12.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_A12_A029 3', mRNA sequence
Length = 628
Score = 132 bits (282), Expect = 7e-030
Identities = 56/70 (80%), Positives = 62/70 (88%)
Frame = +3 / -2
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+GK EIKRIENTT+R VTFC RRNGLLKKAYELSVLC+A+VALI+FS RG+L EYAN S
Sbjct: 318 GRGKIEIKRIENTTSRLVTFC*RRNGLLKKAYELSVLCEADVALIIFSERGKLSEYANKS 139
Query: 429 VKGTIERYKK 458
V TIERYKK
Sbjct: 138 VDRTIERYKK 109
>gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_020_D12 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 527
Score = 131 bits (281), Expect = 1e-029
Identities = 53/75 (70%), Positives = 67/75 (89%)
Frame = +3 / +1
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+ ++S+
Sbjct: 184 RGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSM 363
Query: 432 KGTIERYKKATSDNS 476
+ +ERY+K + +NS
Sbjct: 364 QKIVERYQKYSDENS 408
>gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_E02 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 131 bits (281), Expect = 1e-029
Identities = 53/75 (70%), Positives = 67/75 (89%)
Frame = +3 / +1
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+ ++S+
Sbjct: 184 RGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSM 363
Query: 432 KGTIERYKKATSDNS 476
+ +ERY+K + +NS
Sbjct: 364 QKIVERYQKYSDENS 408
>gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_B04_A029 5', mRNA sequence
Length = 841
Score = 131 bits (281), Expect = 1e-029
Identities = 53/75 (70%), Positives = 67/75 (89%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+ ++S+
Sbjct: 50 RGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSM 229
Query: 432 KGTIERYKKATSDNS 476
+ +ERY+K + +NS
Sbjct: 230 QKIVERYQKYSDENS 274
>gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_G09_A029 5', mRNA sequence
Length = 833
Score = 131 bits (281), Expect = 1e-029
Identities = 53/75 (70%), Positives = 67/75 (89%)
Frame = +3 / +3
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+ ++S+
Sbjct: 183 RGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSM 362
Query: 432 KGTIERYKKATSDNS 476
+ +ERY+K + +NS
Sbjct: 363 QKIVERYQKYSDENS 407
>gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_9_E04_A032 5', mRNA sequence
Length = 437
Score = 131 bits (281), Expect = 1e-029
Identities = 53/75 (70%), Positives = 67/75 (89%)
Frame = +3 / +3
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+ ++S+
Sbjct: 75 RGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSM 254
Query: 432 KGTIERYKKATSDNS 476
+ +ERY+K + +NS
Sbjct: 255 QKIVERYQKYSDENS 299
>gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_10_E02_A032 5', mRNA sequence
Length = 513
Score = 131 bits (281), Expect = 1e-029
Identities = 53/75 (70%), Positives = 67/75 (89%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+ ++S+
Sbjct: 98 RGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSM 277
Query: 432 KGTIERYKKATSDNS 476
+ +ERY+K + +NS
Sbjct: 278 QKIVERYQKYSDENS 322
>gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_G11_A029 5', mRNA sequence
Length = 829
Score = 131 bits (281), Expect = 1e-029
Identities = 53/75 (70%), Positives = 67/75 (89%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+ ++S+
Sbjct: 152 RGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSM 331
Query: 432 KGTIERYKKATSDNS 476
+ +ERY+K + +NS
Sbjct: 332 QKIVERYQKYSDENS 376
>gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_G11_A029 5', mRNA sequence
Length = 808
Score = 131 bits (281), Expect = 1e-029
Identities = 53/75 (70%), Positives = 67/75 (89%)
Frame = +3 / +3
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+ ++S+
Sbjct: 255 RGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSM 434
Query: 432 KGTIERYKKATSDNS 476
+ +ERY+K + +NS
Sbjct: 435 QKIVERYQKYSDENS 479
>gb|CX650456.1|CX650456 COLD1_45_F12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_F12_A029 5', mRNA sequence
Length = 852
Score = 108 bits (231), Expect(2) = 1e-029
Identities = 41/73 (56%), Positives = 62/73 (84%)
Frame = +3 / +1
Query: 249 GKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
G+G+ +++ IEN NRQVTF KRR GL+KKA ELS+LCDAEVA+IVFS+RG+LY+++++S
Sbjct: 292 GRGRVQLRMIENKINRQVTFSKRRTGLMKKASELSILCDAEVAVIVFSNRGKLYQFSSSS 471
Query: 429 VKGTIERYKKATS 467
+ +ER++K ++
Sbjct: 472 MTKILERHRKCST 510
Score = 42.3 bits (86), Expect(2) = 1e-029
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +3 / +1
Query: 510 QHYKQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVL 686
Q E L+++ NLQ R ++G+ + +S KEL+ LE +L++ L +++ KK L
Sbjct: 538 QDSNTELTELKRKTDNLQRWRRHVMGEDLDQLSVKELQQLEQQLEEGLKQVKLKKEQQL 714
>gb|DR177921.1|DR177921 RTMNUT1_8_E05.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_E05_A029 3', mRNA sequence
Length = 785
Score = 77.6 bits (163), Expect(2) = 1e-029
Identities = 31/94 (32%), Positives = 64/94 (68%)
Frame = +3 / +3
Query: 519 KQESARLRQQIVNLQNSNRALIGDSITTMSHKELKHLETRLDKALGKIRAKKNDVLCSEV 698
KQE L+QQI L+ +NR L+G+ + ++S +EL LE+RL + + ++RAKK++++ E+
Sbjct: 225 KQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEI 404
Query: 699 EYMQRREMELQNDNLYLRSRVDENERAQQTANMM 800
+Q +E L+ +N+ L+ R++E ++ ++++
Sbjct: 405 RALQSKEHTLRINNMMLQERLEECTNGKRLSSLL 506
Score = 73.5 bits (154), Expect(2) = 1e-029
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +3 / +3
Query: 312 KRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 428
KRR GL+KKAYELSVLCDA+VALIVFSSRG+LYE ++
Sbjct: 3 KRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTSN 119
>gb|AW587800.1|AW587800 ST67B08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST67B08, mRNA sequence
Length = 457
Score = 130 bits (278), Expect = 3e-029
Identities = 53/71 (74%), Positives = 64/71 (90%)
Frame = +3 / +1
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIEN T+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS RG+LYE+AN S+
Sbjct: 130 RGKTQLKRIENGTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSPRGKLYEFANPSM 309
Query: 432 KGTIERYKKAT 464
+ + RY+K +
Sbjct: 310 QKMLXRYEKCS 342
>gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_G12_A021 5', mRNA sequence
Length = 779
Score = 129 bits (277), Expect = 3e-029
Identities = 53/80 (66%), Positives = 67/80 (83%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIEN T+RQVTF KRRNGLLKKAYELSVLCDAEV LI+FS RG+LYE+A+ S+
Sbjct: 74 RGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSM 253
Query: 432 KGTIERYKKATSDNSSAAGT 491
+ +E+YKK + +N A T
Sbjct: 254 EEILEKYKKRSKENGMAQTT 313
>gb|U90344.1|PRU90344 Pinus radiata putative MADS box transcription factor PrMADS9 mRNA,
complete cds
Length = 1038
Score = 129 bits (277), Expect = 3e-029
Identities = 53/80 (66%), Positives = 67/80 (83%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIEN T+RQVTF KRRNGLLKKAYELSVLCDAEV LI+FS RG+LYE+A+ S+
Sbjct: 125 RGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSM 304
Query: 432 KGTIERYKKATSDNSSAAGT 491
+ +E+YKK + +N A T
Sbjct: 305 EEILEKYKKRSKENGMAQTT 364
>gb|BG318417.1|BG318417 NXPV_013_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_013_D07 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 577
Score = 129 bits (276), Expect = 5e-029
Identities = 53/80 (66%), Positives = 67/80 (83%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIEN T+RQVTF KRRNGLLKKAYELSVLCDAEV LI+FS RG+LYE+A+ S+
Sbjct: 125 RGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSM 304
Query: 432 KGTIERYKKATSDNSSAAGT 491
+ +E+YKK + +N A T
Sbjct: 305 EEILEKYKKRSKENGIAQTT 364
>gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_G03_A029 5', mRNA sequence
Length = 668
Score = 129 bits (276), Expect = 5e-029
Identities = 53/80 (66%), Positives = 67/80 (83%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIEN T+RQVTF KRRNGLLKKAYELSVLCDAEV LI+FS RG+LYE+A+ S+
Sbjct: 125 RGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSM 304
Query: 432 KGTIERYKKATSDNSSAAGT 491
+ +E+YKK + +N A T
Sbjct: 305 EEILEKYKKRSKENGIAQTT 364
>gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV019H03 5', mRNA sequence
Length = 464
Score = 128 bits (275), Expect = 7e-029
Identities = 52/75 (69%), Positives = 66/75 (88%)
Frame = +3 / +1
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+ ++S+
Sbjct: 193 RGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSM 372
Query: 432 KGTIERYKKATSDNS 476
+ + RY+K + +NS
Sbjct: 373 QKIVXRYQKYSDENS 417
>gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV019H03 5' similar to Arabidopsis thaliana sequence
At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 464
Score = 128 bits (275), Expect = 7e-029
Identities = 52/75 (69%), Positives = 66/75 (88%)
Frame = +3 / +1
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
+GKT++KRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEV LIVFS RG+LYE+ ++S+
Sbjct: 193 RGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSM 372
Query: 432 KGTIERYKKATSDNS 476
+ + RY+K + +NS
Sbjct: 373 QKIVXRYQKYSDENS 417
>gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family transcription factor
(PrMADS2) mRNA, complete cds
Length = 1064
Score = 128 bits (275), Expect = 7e-029
Identities = 57/109 (52%), Positives = 74/109 (67%)
Frame = +3 / +2
Query: 228 ERNNGGRGKGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRL 407
ER G+G+ E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+L
Sbjct: 77 ERKKERMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKL 256
Query: 408 YEYANNSVKGTIERYKKATSDNSSAAGTIAEVTIQHYKQESARLRQQIV 554
YE+ + + T+ERY+K + A + E H + + R +++
Sbjct: 257 YEFGSAGMLKTLERYQKCSYVLQDATVSDREAQNWHQEVGKLKARVELL 403
>gb|BX249866.1|BX249866 BX249866 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP029F05, mRNA sequence
Length = 676
Score = 128 bits (274), Expect = 9e-029
Identities = 57/170 (33%), Positives = 103/170 (60%)
Frame = +3 / +2
Query: 252 KGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 431
K K E+KRI+N + RQVTF KR+NGLLKKA+ELSVLCDAE+ALI+FS G++ E+A++
Sbjct: 2 KTKMEMKRIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEIALIIFSETGKICEFASHDD 181
Query: 432 KGTIERYKKATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSNRALIGDSITTMSH 611
TI + ++ + + +++ + + LR+++ L+ R + G+ + +++
Sbjct: 182 MATILEKYRTYTETDGNMESSSVQSVKIAESQLKALREKMNKLKKKERNMAGEELDSLTI 361
Query: 612 KELKHLETRLDKALGKIRAKKNDVLCSEVEYMQRREMELQNDNLYLRSRV 761
KEL+ LE +L + +I KK +L + + + L+ + + L +++
Sbjct: 362 KELQRLENQLQIGIKRISDKKMKMLVQSSKLLLEKVRALEEEKIELETKL 511
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 666,738,626
Number of Sequences: 355925
Number of extensions: 9883476
Number of successful extensions: 52398
Number of sequences better than 1.0e-020: 150
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 21069494820
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)