TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623104.2.4
(1628 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus add... 134 6e-048
gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C fo... 119 3e-040
gb|DR096226.1|DR096226 STRR1_26_D02.g1_A033 Stem Response R... 117 9e-040
gb|DR068962.1|DR068962 RTDK1_3_H10.g1_A029 Roots, dark Pinu... 115 8e-039
gb|CO197457.1|CO197457 GEO1_6_C03.g1_A029 Root gravitropism... 116 1e-037
gb|BX252155.1|BX252155 BX252155 Pinus pinaster differenciat... 111 4e-034
gb|DR072028.1|DR072028 RTDK1_23_D06.g1_A029 Roots, dark Pin... 123 3e-033
gb|DR022672.1|DR022672 STRS1_52_E06.g1_A034 Shoot tip pitch... 141 2e-032
gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus pota... 129 3e-032
gb|DR692937.1|DR692937 EST1083025 Normalized pine embryo li... 68 7e-031
gb|DR050690.1|DR050690 RTBOR1_25_C10.b1_A029 Roots plus add... 86 2e-030
gb|BX253476.1|BX253476 BX253476 Pinus pinaster differenciat... 125 2e-030
gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control P... 122 4e-030
gb|CO196845.1|CO196845 GEO1_2_A06.b1_A029 Root gravitropism... 122 2e-029
gb|DR057265.1|DR057265 RTNIT1_4_E07.g1_A029 Roots minus nit... 115 3e-029
gb|BX250521.1|BX250521 BX250521 Pinus pinaster differenciat... 115 4e-029
gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control ... 123 4e-028
gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo li... 125 1e-027
gb|BQ695692.1|BQ695692 NXPV_031_E12_F NXPV (Nsf Xylem Plani... 117 2e-026
gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Plani... 119 5e-026
gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response R... 118 1e-025
gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response R... 118 1e-025
gb|BG673824.1|BG673824 NXPV_075_E12_F NXPV (Nsf Xylem Plani... 117 2e-025
gb|BI397545.1|BI397545 NXPV_100_F08_F NXPV (Nsf Xylem Plani... 117 2e-025
gb|BQ695682.1|BQ695682 NXPV_031_D11_F NXPV (Nsf Xylem Plani... 117 2e-025
gb|DR057194.1|DR057194 RTNIT1_4_E07.b1_A029 Roots minus nit... 117 2e-025
gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response R... 114 2e-024
gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Re... 111 1e-023
gb|BQ695778.1|BQ695778 NXPV_032_E11_F NXPV (Nsf Xylem Plani... 111 2e-023
gb|CO370165.1|CO370165 RTK1_65_H06.g1_A029 Roots minus pota... 60 1e-022
gb|CO168808.1|CO168808 NDL1_2_D11.g1_A029 Needles control P... 99 5e-022
gb|DR090030.1|DR090030 RTAL1_12_G03.b1_A029 Roots plus adde... 57 2e-021
gb|DR119823.1|DR119823 RTMG1_25_F06.g2_A029 Roots minus mag... 57 2e-021
>gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 5', mRNA sequence
Length = 883
Score = 134 bits (288), Expect(4) = 6e-048
Identities = 57/143 (39%), Positives = 86/143 (60%)
Frame = +2 / +2
Query: 491 KKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTD 670
+ + C +P +LV+ +N + +T +S H+ + + + ++++ + APGDSPNTD
Sbjct: 182 RNHICLSVPTALVVYSSSNVHLRDLTFQDSPKIHVEIAQSTYVQVENLQIVAPGDSPNTD 361
Query: 671 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 850
GIH+ S + I N I GDDC+SI G+S + I + CGPGHGISIGSLG E V
Sbjct: 362 GIHVYASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGNSEDTV 541
Query: 851 TDINVKDCTLKKTMFGVRIKAYE 919
+D+ V +L T GVRIK ++
Sbjct: 542 SDVIVNGASLTATQNGVRIKTWQ 610
Score = 55.1 bits (114), Expect(4) = 6e-048
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / +2
Query: 1037 NGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNV 1174
N +S V V +VT+ +ITGTS+T EA+ L C+ VPCT + M+ +++
Sbjct: 746 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 883
Score = 30.4 bits (60), Expect(4) = 6e-048
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2 / +2
Query: 950 IHYENIKMEDSANPIFIDMKYC 1015
I +++++M + ANPI ID YC
Sbjct: 635 IIFQHVRMTNVANPIIIDQYYC 700
Score = 28.6 bits (56), Expect(4) = 6e-048
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2 / +2
Query: 395 WIEILRVDNLVITGKGNLDGQGPAVWS 475
W+ +V L I+G G +DG G W+
Sbjct: 83 WLMFSKVQGLTISGGGIIDGTGRKWWA 163
>gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_E08_A029 5', mRNA sequence
Length = 881
Score = 119 bits (255), Expect(3) = 3e-040
Identities = 49/94 (52%), Positives = 61/94 (64%)
Frame = +2 / -2
Query: 638 VTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIG 817
+ APGDSPNTDGIH+ S + I N I GDDC+SI G+S + I + CGPGHGISIG
Sbjct: 874 IVAPGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIG 695
Query: 818 SLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
SLG E V+D+ V +L T GVRIK ++
Sbjct: 694 SLGSGNSEDTVSDVIVNGASLTATQNGVRIKTWQ 593
Score = 55.1 bits (114), Expect(3) = 3e-040
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / -2
Query: 1037 NGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNV 1174
N +S V V +VT+ +ITGTS+T EA+ L C+ VPCT + M+ +++
Sbjct: 457 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 320
Score = 30.4 bits (60), Expect(3) = 3e-040
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2 / -2
Query: 950 IHYENIKMEDSANPIFIDMKYC 1015
I +++++M + ANPI ID YC
Sbjct: 568 IIFQHVRMTNVANPIIIDQYYC 503
>gb|DR096226.1|DR096226 STRR1_26_D02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_26_D02_A033 5', mRNA sequence
Length = 802
Score = 117 bits (251), Expect(3) = 9e-040
Identities = 49/110 (44%), Positives = 68/110 (61%)
Frame = +2 / +3
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + ++++ + APGDSPNTDGIH+ S + I N I GDDCISI +S +
Sbjct: 63 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 242
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
I+ + CGPGHGISIGSLG V+D+ V +L T GVRIK ++
Sbjct: 243 EISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 392
Score = 57.0 bits (118), Expect(3) = 9e-040
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / +3
Query: 1037 NGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNV 1174
N +S V V +VT+ +ITGTS+T EA+ L C+ VPCT + M+ +++
Sbjct: 528 NHSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 665
Score = 28.6 bits (56), Expect(3) = 9e-040
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2 / +3
Query: 947 KIHYENIKMEDSANPIFIDMKYC 1015
+I ++++ M + +NPI ID YC
Sbjct: 414 RIMFQHVNMINVSNPIIIDQYYC 482
>gb|DR068962.1|DR068962 RTDK1_3_H10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_3_H10_A029 5', mRNA sequence
Length = 794
Score = 115 bits (245), Expect(3) = 8e-039
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = +2 / +1
Query: 626 KDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHG 805
+++ + A GDSPNTDGIH+ S + I N I GDDC+SI G+S + I + CGPGHG
Sbjct: 1 ENLQIVALGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSGIQINKLVCGPGHG 180
Query: 806 ISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
ISIGSLG E V+D+ V +L T GVRIK ++
Sbjct: 181 ISIGSLGSGDSEDTVSDVIVNGASLTATQNGVRIKTWQ 294
Score = 54.7 bits (113), Expect(3) = 8e-039
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / +1
Query: 1037 NGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNV 1174
N +S V V +VT+ +ITGTS+T EA+ L C+ VPCT + M+ +++
Sbjct: 430 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKILMEGISL 567
Score = 30.4 bits (60), Expect(3) = 8e-039
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2 / +1
Query: 950 IHYENIKMEDSANPIFIDMKYC 1015
I +++++M + ANPI ID YC
Sbjct: 319 IIFQHVRMTNVANPIIIDQYYC 384
>gb|CO197457.1|CO197457 GEO1_6_C03.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_6_C03_A029 5', mRNA sequence
Length = 580
Score = 116 bits (248), Expect(3) = 1e-037
Identities = 48/99 (48%), Positives = 64/99 (64%)
Frame = +2 / +3
Query: 623 IKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGH 802
++++ + APGDSPNTDGIH+ S + I N I GDDCISI +S + I+ + CGPGH
Sbjct: 33 VENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGH 212
Query: 803 GISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
GISIGSLG V+D+ V +L T GVRIK ++
Sbjct: 213 GISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 329
Score = 51.5 bits (106), Expect(3) = 1e-037
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +2 / +3
Query: 1037 NGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCT 1147
N +S V V +VT+ +ITGTS+T EA+ L C+ VPCT
Sbjct: 465 NHSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCT 575
Score = 28.6 bits (56), Expect(3) = 1e-037
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2 / +3
Query: 947 KIHYENIKMEDSANPIFIDMKYC 1015
+I ++++ M + +NPI ID YC
Sbjct: 351 RIMFQHVNMINVSNPIIIDQYYC 419
>gb|BX252155.1|BX252155 BX252155 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP060E10, mRNA sequence
Length = 693
Score = 111 bits (238), Expect(4) = 4e-034
Identities = 47/111 (42%), Positives = 64/111 (57%)
Frame = +2 / +3
Query: 491 KKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTD 670
K C+ P + +D N + + NS+ H+ + R + + D+ V APGDSPNTD
Sbjct: 360 KSNPCRSAPTAFTVDLSWNVIIKDLNFQNSQQIHIVISRSIGVQVTDLLVVAPGDSPNTD 539
Query: 671 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSL 823
GIH+ S + I I GDDCISI G++ V + V CGPGHGIS+GSL
Sbjct: 540 GIHITRSQDVVINGCKIATGDDCISIVSGSANVKVGDVLCGPGHGISVGSL 692
Score = 34.5 bits (69), Expect(4) = 4e-034
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2 / +3
Query: 158 DITKLGASGNGKTDSTKAVQEAWASAC 238
++ GA G+G TD T+A AW AC
Sbjct: 12 NVESFGAQGDGITDDTQAFMNAWQMAC 92
Score = 32.7 bits (65), Expect(4) = 4e-034
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2 / +3
Query: 395 WIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKK 496
W+ R++ + I G+G +DG G W+++ T K
Sbjct: 261 WLVFSRLNGVTIQGEGVIDGSGQKWWAQSCKTNK 362
Score = 22.6 bits (43), Expect(4) = 4e-034
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2 / +3
Query: 281 FLVGQLNFTGPC 316
+LV + FTGPC
Sbjct: 135 YLVKPITFTGPC 170
>gb|DR072028.1|DR072028 RTDK1_23_D06.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_D06_A029 5', mRNA sequence
Length = 671
Score = 123 bits (263), Expect(3) = 3e-033
Identities = 54/139 (38%), Positives = 80/139 (57%)
Frame = +2 / +3
Query: 503 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHM 682
C +P + V+ +N + + +S H+ + + ++++ + APGDSPNTDGIH+
Sbjct: 159 CLNIPTAFVVYSSSNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHI 338
Query: 683 GDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 862
S + I N I GDDCISI +S + I+ + CGPGHGISIGSLG V+D+
Sbjct: 339 YASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVF 518
Query: 863 VKDCTLKKTMFGVRIKAYE 919
V +L T GVRIK ++
Sbjct: 519 VNGASLNGTQNGVRIKTWQ 575
Score = 29.5 bits (58), Expect(3) = 3e-033
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2 / +3
Query: 380 KDHGNWIEILRVDNLVITGKGNLDGQGPAVW 472
++ W+ +V L I G G +DG G W
Sbjct: 33 QERNEWLMFSKVQGLTINGGGIIDGTGQKWW 125
Score = 28.6 bits (56), Expect(3) = 3e-033
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2 / +3
Query: 947 KIHYENIKMEDSANPIFIDMKYC 1015
+I ++++ M + +NPI ID YC
Sbjct: 597 RIMFQHVNMINVSNPIIIDQYYC 665
>gb|DR022672.1|DR022672 STRS1_52_E06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_52_E06_A034 5', mRNA sequence
Length = 566
Score = 141 bits (302), Expect = 2e-032
Identities = 58/146 (39%), Positives = 85/146 (58%)
Frame = +2 / +2
Query: 491 KKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTD 670
K C+ P ++ + NN + +T+ NS+ H+ + RC ++ + V APG SPNTD
Sbjct: 77 KTNPCRSAPTAITFELCNNLRMMNLTVENSQQMHIKLRRCVGVVADHLKVLAPGHSPNTD 256
Query: 671 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 850
GIH+ S + I NT+IG GDDCISI + + + CGPGHGISIGSLG + V
Sbjct: 257 GIHVSASKDVVIKNTIIGTGDDCISIVSDSFNICTENIACGPGHGISIGSLGEGSAKAQV 436
Query: 851 TDINVKDCTLKKTMFGVRIKAYEDAA 928
D+ V L+ T G+RIK ++ ++
Sbjct: 437 ADVMVHGAFLENTTNGLRIKTWQGSS 514
>gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 3', mRNA sequence
Length = 723
Score = 129 bits (277), Expect(2) = 3e-032
Identities = 56/139 (40%), Positives = 84/139 (60%)
Frame = +2 / -2
Query: 503 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHM 682
C +P +LV+ +N + +T +S H+ + + + ++++ + APGDSPNTDGIH+
Sbjct: 563 CLSVPTALVVYSSSNVHLRDLTFQDSPKIHVEIAQSTYVEVENLQIVAPGDSPNTDGIHV 384
Query: 683 GDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 862
S + I N I GDDC+SI G+S + I + CGPGHGISIGSLG E V+++
Sbjct: 383 YASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGDLEDTVSEVI 204
Query: 863 VKDCTLKKTMFGVRIKAYE 919
V +L T GVRIK ++
Sbjct: 203 VNGASLTATQNGVRIKTWQ 147
Score = 30.4 bits (60), Expect(2) = 3e-032
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2 / -2
Query: 950 IHYENIKMEDSANPIFIDMKYC 1015
I +++++M + ANPI ID YC
Sbjct: 122 IIFQHVRMTNVANPIIIDQYYC 57
>gb|DR692937.1|DR692937 EST1083025 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADS13 3' end, mRNA sequence
Length = 757
Score = 68.0 bits (142), Expect(4) = 7e-031
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = +2 / +1
Query: 155 FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGD 325
F++ + GA +G TD+ KA AW +AC T + IP+G+FL+G ++F GPC D
Sbjct: 220 FNVQQYGAKADGITDNRKAFLAAWVAACSSTHTSVVYIPEGNFLLGPVSFEGPCNND 390
Score = 52.4 bits (108), Expect(4) = 7e-031
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +2 / +3
Query: 587 FHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGD 688
F ++ CK++ +++T+ APGDSPNTDGIHMGD
Sbjct: 654 FPHSIRSCKNVNAEELTMEAPGDSPNTDGIHMGD 755
Score = 35.9 bits (72), Expect(4) = 7e-031
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2 / +1
Query: 395 WIEILRVDNLVITGKGNLDGQGPAVWS 475
W+ VD+L + G G LDGQG + W+
Sbjct: 469 WLNFNYVDHLTVEGMGRLDGQGASWWN 549
Score = 34.5 bits (69), Expect(4) = 7e-031
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2 / +1
Query: 479 NSCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHM 595
NS KY C P +L+ NN V +T +NSK FH+
Sbjct: 547 NSECTKYVCHGGPTTLLFSNANNTVVRQITSINSKHFHI 663
>gb|DR050690.1|DR050690 RTBOR1_25_C10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 3', mRNA sequence
Length = 835
Score = 86.3 bits (182), Expect(3) = 2e-030
Identities = 36/72 (50%), Positives = 45/72 (62%)
Frame = +2 / +2
Query: 704 ITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLK 883
I N I GDDC+SI G+S + I + CGPGHGISIGSLG E V+D+ V +L
Sbjct: 5 IQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGNSEDTVSDVIVNGASLT 184
Query: 884 KTMFGVRIKAYE 919
T GVRIK ++
Sbjct: 185 ATQNGVRIKTWQ 220
Score = 55.1 bits (114), Expect(3) = 2e-030
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / +2
Query: 1037 NGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNV 1174
N +S V V +VT+ +ITGTS+T EA+ L C+ VPCT + M+ +++
Sbjct: 356 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 493
Score = 30.4 bits (60), Expect(3) = 2e-030
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2 / +2
Query: 950 IHYENIKMEDSANPIFIDMKYC 1015
I +++++M + ANPI ID YC
Sbjct: 245 IIFQHVRMTNVANPIIIDQYYC 310
>gb|BX253476.1|BX253476 BX253476 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083H12 similar to POLYGALACTURONASE
PRECURSOR, mRNA sequence
Length = 596
Score = 125 bits (268), Expect(2) = 2e-030
Identities = 53/139 (38%), Positives = 82/139 (58%)
Frame = +2 / +1
Query: 503 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHM 682
C +P + ++ +N + + +S H+ + + ++++ + APGDSPNTDGIH+
Sbjct: 121 CLSVPTAFMVYSSSNVHLRDLKFRDSPKIHVEIAMSTHVQVENLEIVAPGDSPNTDGIHI 300
Query: 683 GDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 862
S + I N I GDDCISI +S + I+ + CGPGHGISIGSLG+ E V+D+
Sbjct: 301 YASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGKADSEDTVSDVF 480
Query: 863 VKDCTLKKTMFGVRIKAYE 919
V +L T G+RIK ++
Sbjct: 481 VNGASLNGTQNGLRIKTWQ 537
Score = 28.1 bits (55), Expect(2) = 2e-030
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2 / +1
Query: 395 WIEILRVDNLVITGKGNLDGQGPAVW 472
W+ +V L I G G +DG G W
Sbjct: 10 WLMFSKVQGLTINGGGIIDGTGQKWW 87
>gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_D01_A029 5', mRNA sequence
Length = 441
Score = 122 bits (261), Expect(2) = 4e-030
Identities = 50/110 (45%), Positives = 70/110 (63%)
Frame = +2 / +3
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + + ++++ + APGDSPNTDGIH+ S + I N I GDDC+SI G+S +
Sbjct: 3 HVEIAQSTYVQVENLQIVAPGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSGI 182
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
I + CGPGHGISIGSLG E V+D+ V +L T GVRIK ++
Sbjct: 183 QINKLVCGPGHGISIGSLGSGDSEDTVSDVIVNGASLTATQNGVRIKTWQ 332
Score = 30.4 bits (60), Expect(2) = 4e-030
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2 / +3
Query: 950 IHYENIKMEDSANPIFIDMKYC 1015
I +++++M + ANPI ID YC
Sbjct: 357 IIFQHVRMTNVANPIIIDQYYC 422
>gb|CO196845.1|CO196845 GEO1_2_A06.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_2_A06_A029 3', mRNA sequence
Length = 691
Score = 122 bits (260), Expect(2) = 2e-029
Identities = 53/139 (38%), Positives = 80/139 (57%)
Frame = +2 / -2
Query: 503 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHM 682
C +P + V+ +N + + +S H+ + + ++++ + APGDSPNTDGIH+
Sbjct: 591 CLNIPTAFVVYSSSNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHI 412
Query: 683 GDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 862
S + I N I GDDCISI +S + I+ + CGPGHGISIGSLG V+D+
Sbjct: 411 YASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVF 232
Query: 863 VKDCTLKKTMFGVRIKAYE 919
V +L T GVRI+ ++
Sbjct: 231 VNGASLNGTQNGVRIRTWQ 175
Score = 28.6 bits (56), Expect(2) = 2e-029
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2 / -2
Query: 947 KIHYENIKMEDSANPIFIDMKYC 1015
+I ++++ M + +NPI ID YC
Sbjct: 153 RIMFQHVNMINVSNPIIIDQYYC 85
>gb|DR057265.1|DR057265 RTNIT1_4_E07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_E07_A029 5', mRNA sequence
Length = 650
Score = 115 bits (246), Expect(3) = 3e-029
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = +2 / +2
Query: 623 IKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGH 802
++++ + APGDSPNTDGIH+ S + I N I GDDCISI +S + I+ + CGPGH
Sbjct: 356 VENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGH 535
Query: 803 GISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAY 916
GISIGSLG V+D+ V +L T GVRIK +
Sbjct: 536 GISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTW 649
Score = 29.5 bits (58), Expect(3) = 3e-029
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2 / +1
Query: 380 KDHGNWIEILRVDNLVITGKGNLDGQGPAVW 472
++ W+ +V L I G G +DG G W
Sbjct: 109 QERNEWLMFSKVQGLTINGGGIIDGTGQKWW 201
Score = 28.1 bits (55), Expect(3) = 3e-029
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2 / +1
Query: 281 FLVGQLNFTGPCKGD 325
+LV +NF GPCK D
Sbjct: 1 YLVKPINFNGPCKSD 45
>gb|BX250521.1|BX250521 BX250521 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038A08 similar to POLYGALACTURONASE
PRECURSOR, mRNA sequence
Length = 662
Score = 115 bits (245), Expect(3) = 4e-029
Identities = 49/129 (37%), Positives = 75/129 (58%)
Frame = +2 / +2
Query: 503 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHM 682
C +P + ++ +N + + +S H+ + + ++++ + APGDSPNTDGIH+
Sbjct: 275 CLSVPTAFMVYSSSNVHLRDLKFRDSPKIHVEIAMSTHVQVENLEIVAPGDSPNTDGIHI 454
Query: 683 GDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 862
S + I N I GDDCISI +S + I+ + CGPGHGISIGSLG+ E V+D+
Sbjct: 455 YASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGQADSEDTVSDVF 634
Query: 863 VKDCTLKKT 889
V +L T
Sbjct: 635 VNGASLNGT 661
Score = 29.5 bits (58), Expect(3) = 4e-029
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2 / +2
Query: 380 KDHGNWIEILRVDNLVITGKGNLDGQGPAVW 472
++ W+ +V L I G G +DG G W
Sbjct: 149 QERNEWLMFSKVQGLTINGGGIIDGTGQKWW 241
Score = 22.6 bits (43), Expect(3) = 4e-029
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2 / +2
Query: 281 FLVGQLNFTGPCK 319
+LV + F GPCK
Sbjct: 41 YLVKPITFNGPCK 79
>gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_G01_A029 5', mRNA sequence
Length = 695
Score = 123 bits (264), Expect(2) = 4e-028
Identities = 52/146 (35%), Positives = 85/146 (58%)
Frame = +2 / +1
Query: 491 KKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTD 670
+ + C +P +LV++ +N + +T + H+ + + ++++ + APGDSPNTD
Sbjct: 232 RSHICPSVPTALVVNSSSNVHLKNLTFHVNPKIHVEINESTYVEVENLKIVAPGDSPNTD 411
Query: 671 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 850
GIH+ DS + I N I GD C+SIG +S + I + C PG GISIGSLG E V
Sbjct: 412 GIHVYDSQHVVIQNCKIATGDYCVSIGTESSSIQINKLVCEPGQGISIGSLGSGNSEDTV 591
Query: 851 TDINVKDCTLKKTMFGVRIKAYEDAA 928
+D+ V +L + GVR++ ++ +A
Sbjct: 592 SDVIVNGASLTASQNGVRVETWQSSA 669
Score = 25.8 bits (50), Expect(2) = 4e-028
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2 / +1
Query: 278 DFLVGQLNFTGPCKGDVTIQVDGNLLAT 361
++ V +NFTGPC I V + T
Sbjct: 34 NYSVKPINFTGPCNSVKPINVTAQISGT 117
>gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA992, mRNA sequence
Length = 841
Score = 125 bits (267), Expect = 1e-027
Identities = 53/147 (36%), Positives = 86/147 (58%)
Frame = +2 / -2
Query: 488 TKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNT 667
T+ + C +P +LV++ +N + +T + H+ + + + ++++ + APGDSPNT
Sbjct: 798 TRNHICPSVPTALVVNSSSNVHLKNLTFHVNPKIHVEINQSTYVEVENLKIVAPGDSPNT 619
Query: 668 DGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKD 847
DGI + DS + I N I GDDC+SIG +S + I + C PG GISIGSLG E
Sbjct: 618 DGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSEDT 439
Query: 848 VTDINVKDCTLKKTMFGVRIKAYEDAA 928
V+D+ V +L + GVR++ + +A
Sbjct: 438 VSDVIVNGASLTASQNGVRVQTGQSSA 358
>gb|BQ695692.1|BQ695692 NXPV_031_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_E12 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 117 bits (251), Expect(2) = 2e-026
Identities = 49/110 (44%), Positives = 68/110 (61%)
Frame = +2 / +2
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + ++++ + APGDSPNTDGIH+ S + I N I GDDCISI +S +
Sbjct: 50 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 229
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
I+ + CGPGHGISIGSLG V+D+ V +L T GVRIK ++
Sbjct: 230 EISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 379
Score = 22.6 bits (43), Expect(2) = 2e-026
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2 / +2
Query: 947 KIHYENIKMEDSANPIFIDMKYC 1015
+I +++ M +NPI I YC
Sbjct: 401 RIMXQHVNMIXXSNPIIIXXIYC 469
>gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_D07 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 537
Score = 119 bits (255), Expect = 5e-026
Identities = 51/142 (35%), Positives = 82/142 (57%)
Frame = +2 / +3
Query: 503 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHM 682
C +P +LV++ +N + +T + H+ + + + ++++ + APGDSPNTDGI +
Sbjct: 54 CPSVPTALVVNSSSNVRLKNLTFHVNPKIHVEINQSTYVEVENLKIVAPGDSPNTDGIRV 233
Query: 683 GDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 862
DS + I N I GDDC+SIG +S + I + C PG GISIGSLG E V+D+
Sbjct: 234 YDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSEDTVSDVI 413
Query: 863 VKDCTLKKTMFGVRIKAYEDAA 928
+L + GVR++ + +A
Sbjct: 414 XXGASLTASQNGVRVQTGQSSA 479
>gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_E02_A033 3', mRNA sequence
Length = 768
Score = 118 bits (252), Expect = 1e-025
Identities = 47/113 (41%), Positives = 71/113 (62%)
Frame = +2 / +2
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + + ++++ + APGDSPNTDGIH+ DS + I N I GDDC+SIG +S +
Sbjct: 32 HVEINQSTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSSI 211
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAA 928
I + C PG GISIGSLG E V+D+ V +L + GVR++ ++ +A
Sbjct: 212 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETWQSSA 370
>gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_E02_A033 5', mRNA sequence
Length = 546
Score = 118 bits (252), Expect = 1e-025
Identities = 47/113 (41%), Positives = 71/113 (62%)
Frame = +2 / +2
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + + ++++ + APGDSPNTDGIH+ DS + I N I GDDC+SIG +S +
Sbjct: 5 HVEINQSTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSSI 184
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAA 928
I + C PG GISIGSLG E V+D+ V +L + GVR++ ++ +A
Sbjct: 185 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETWQSSA 343
>gb|BG673824.1|BG673824 NXPV_075_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_E12 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 471
Score = 117 bits (251), Expect = 2e-025
Identities = 49/110 (44%), Positives = 68/110 (61%)
Frame = +2 / +2
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + ++++ + APGDSPNTDGIH+ S + I N I GDDCISI +S +
Sbjct: 50 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 229
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
I+ + CGPGHGISIGSLG V+D+ V +L T GVRIK ++
Sbjct: 230 EISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 379
>gb|BI397545.1|BI397545 NXPV_100_F08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_100_F08 5' similar to Arabidopsis
thaliana sequence At1g80170 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 117 bits (251), Expect = 2e-025
Identities = 49/110 (44%), Positives = 68/110 (61%)
Frame = +2 / +2
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + ++++ + APGDSPNTDGIH+ S + I N I GDDCISI +S +
Sbjct: 50 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 229
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
I+ + CGPGHGISIGSLG V+D+ V +L T GVRIK ++
Sbjct: 230 EISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 379
>gb|BQ695682.1|BQ695682 NXPV_031_D11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_D11 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 117 bits (251), Expect = 2e-025
Identities = 49/110 (44%), Positives = 68/110 (61%)
Frame = +2 / +2
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + ++++ + APGDSPNTDGIH+ S + I N I GDDCISI +S +
Sbjct: 50 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 229
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
I+ + CGPGHGISIGSLG V+D+ V +L T GVRIK ++
Sbjct: 230 EISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 379
>gb|DR057194.1|DR057194 RTNIT1_4_E07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_E07_A029 3', mRNA sequence
Length = 504
Score = 117 bits (251), Expect = 2e-025
Identities = 49/110 (44%), Positives = 68/110 (61%)
Frame = +2 / -2
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + ++++ + APGDSPNTDGIH+ S + I N I GDDCISI +S +
Sbjct: 497 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 318
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
I+ + CGPGHGISIGSLG V+D+ V +L T GVRIK ++
Sbjct: 317 EISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 168
>gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_D04_A033 5', mRNA sequence
Length = 695
Score = 114 bits (244), Expect = 2e-024
Identities = 51/138 (36%), Positives = 77/138 (55%)
Frame = +2 / +3
Query: 515 PNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSS 694
PN F N + +T + H+ + + + ++++ + APGDSPNTDGI + DS
Sbjct: 21 PNRTCGKF*LNVHLKNLTFHVNPKIHVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQ 200
Query: 695 GITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDC 874
+ I N I GDDC+SIG +S + I + C PG GISIGSLG E V+D+ V
Sbjct: 201 HVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGA 380
Query: 875 TLKKTMFGVRIKAYEDAA 928
+L + GVR++ + +A
Sbjct: 381 SLTASQNGVRVQTGQSSA 434
>gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_G02_A033 3', mRNA sequence
Length = 860
Score = 111 bits (238), Expect = 1e-023
Identities = 46/113 (40%), Positives = 69/113 (61%)
Frame = +2 / +2
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + + ++++ + APGDSPNTDGI + DS + I N I GDDC+SIG +S +
Sbjct: 56 HVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTI 235
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAA 928
I + C PG GISIGSLG E V+D+ V +L + GVR++ + +A
Sbjct: 236 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVQTGQSSA 394
>gb|BQ695778.1|BQ695778 NXPV_032_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_032_E11 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 423
Score = 111 bits (236), Expect = 2e-023
Identities = 47/107 (43%), Positives = 63/107 (58%)
Frame = +2 / +2
Query: 590 HMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKV 769
H+ + + ++++ + APGDSPNTDGIH+ S + I N I GDDCISI +S +
Sbjct: 50 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 229
Query: 770 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIK 910
I+ + CGPGHGISIGSLG V+D+ V T VRIK
Sbjct: 230 EISKLVCGPGHGISIGSLGSXXSNDTVSDVFVNGAXXNGTQNXVRIK 370
>gb|CO370165.1|CO370165 RTK1_65_H06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 5', mRNA sequence
Length = 728
Score = 59.7 bits (124), Expect(3) = 1e-022
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +2 / -1
Query: 755 GTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
G+S + I + CGPGHGIS+GSLG E V+++ V +L T GVRIK ++
Sbjct: 725 GSSDIQINKLVCGPGHGISMGSLGSGDLEDTVSEVIVNGASLTATQNGVRIKTWQ 561
Score = 55.1 bits (114), Expect(3) = 1e-022
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / -1
Query: 1037 NGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNV 1174
N +S V V +VT+ +ITGTS+T EA+ L C+ VPCT + M+ +++
Sbjct: 425 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 288
Score = 30.4 bits (60), Expect(3) = 1e-022
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2 / -1
Query: 950 IHYENIKMEDSANPIFIDMKYC 1015
I +++++M + ANPI ID YC
Sbjct: 536 IIFQHVRMTNVANPIIIDQYYC 471
>gb|CO168808.1|CO168808 NDL1_2_D11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_2_D11_A029 5', mRNA sequence
Length = 728
Score = 98.7 bits (209), Expect(3) = 5e-022
Identities = 41/90 (45%), Positives = 55/90 (61%)
Frame = +2 / +3
Query: 659 PNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKD 838
PNTDGIH+ DS + I N I GDDC+SIG +S + I + C PG GISIGSLG
Sbjct: 291 PNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNS 470
Query: 839 EKDVTDINVKDCTLKKTMFGVRIKAYEDAA 928
E V+D+ V +L + GVR++ + +A
Sbjct: 471 EDTVSDVIVNGASLTASQNGVRVETGQSSA 560
Score = 27.6 bits (54), Expect(3) = 5e-022
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2 / +2
Query: 278 DFLVGQLNFTGPCKGDVTIQVDGNLLATTD 367
++ V +NFTGPC I + G + D
Sbjct: 74 NYSVKPINFTGPCNSVKHINISGTIFFRPD 163
Score = 22.6 bits (43), Expect(3) = 5e-022
Identities = 6/19 (31%), Positives = 10/19 (52%)
Frame = +2 / +2
Query: 221 AWASACGGTGKQTILIPKG 277
+W +AC + L+P G
Sbjct: 14 SWNAACNSSSDSVFLVPHG 70
>gb|DR090030.1|DR090030 RTAL1_12_G03.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_12_G03_A029 3', mRNA sequence
Length = 672
Score = 57.4 bits (119), Expect(3) = 2e-021
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / -3
Query: 1037 NGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNV 1174
N +S V V +VT+ +ITGTS+T EA+ L C+ VPCT + M+ +++
Sbjct: 403 NDSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 266
Score = 55.1 bits (114), Expect(3) = 2e-021
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = +2 / -3
Query: 788 CGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
CGPGHGISIGSLG V+D+ V +L T GVRIK ++
Sbjct: 670 CGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 539
Score = 28.6 bits (56), Expect(3) = 2e-021
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2 / -3
Query: 947 KIHYENIKMEDSANPIFIDMKYC 1015
+I ++++ M + +NPI ID YC
Sbjct: 517 RIMFQHVNMINVSNPIIIDQYYC 449
>gb|DR119823.1|DR119823 RTMG1_25_F06.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_25_F06_A029 5', mRNA sequence
Length = 589
Score = 57.4 bits (119), Expect(3) = 2e-021
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / +3
Query: 1037 NGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNV 1174
N +S V V +VT+ +ITGTS+T EA+ L C+ VPCT + M+ +++
Sbjct: 270 NDSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 407
Score = 55.1 bits (114), Expect(3) = 2e-021
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = +2 / +3
Query: 788 CGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
CGPGHGISIGSLG V+D+ V +L T GVRIK ++
Sbjct: 3 CGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 134
Score = 28.6 bits (56), Expect(3) = 2e-021
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2 / +3
Query: 947 KIHYENIKMEDSANPIFIDMKYC 1015
+I ++++ M + +NPI ID YC
Sbjct: 156 RIMFQHVNMINVSNPIIIDQYYC 224
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 781,973,552
Number of Sequences: 355925
Number of extensions: 11934494
Number of successful extensions: 76417
Number of sequences better than 1.0e-020: 40
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 25964427960
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)