TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.2
(562 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR019196.1|DR019196 STRS1_28_A02.g1_A034 Shoot tip pitch... 171 3e-042
gb|DR079131.1|DR079131 RTFEPL1_9_F09.b1_A029 Roots plus add... 171 3e-042
gb|DR079207.1|DR079207 RTFEPL1_9_F09.g1_A029 Roots plus add... 171 3e-042
gb|DR179202.1|DR179202 RTMNUT1_16_D10.g1_A029 Roots minus m... 171 3e-042
gb|DR681790.1|DR681790 EST1071865 Normalized pine embryo li... 171 3e-042
gb|DR694320.1|DR694320 EST1084412 Normalized pine embryo li... 171 3e-042
gb|DR120277.1|DR120277 RTMG1_28_D11.g2_A029 Roots minus mag... 163 1e-039
dbj|BD273072.1| Materials and methods for the modification ... 154 6e-037
gb|DR179128.1|DR179128 RTMNUT1_16_D10.b1_A029 Roots minus m... 148 4e-035
gb|DR684177.1|DR684177 EST1074254 Normalized pine embryo li... 136 1e-031
gb|DR081782.1|DR081782 RTFEPL1_32_F04.b1_A029 Roots plus ad... 116 1e-025
gb|CF663414.1|CF663414 RTCNT1_2_E05.g1_A029 Root control Pi... 106 1e-022
gb|CO175343.1|CO175343 NDL1_54_D01.b1_A029 Needles control ... 106 1e-022
gb|CO175416.1|CO175416 NDL1_54_D01.g1_A029 Needles control ... 106 1e-022
gb|CO366765.1|CO366765 RTK1_29_H12.g1_A029 Roots minus pota... 106 1e-022
gb|CV031633.1|CV031633 RTNACL1_2_F07.g1_A029 Roots plus add... 106 1e-022
gb|CX647228.1|CX647228 COLD1_14_B03.g1_A029 Root cold Pinus... 106 1e-022
gb|DR092962.1|DR092962 STRR1_5_E03.b1_A033 Stem Response Re... 106 1e-022
gb|DR093044.1|DR093044 STRR1_5_E03.g1_A033 Stem Response Re... 106 1e-022
gb|DR118494.1|DR118494 RTMG1_17_H05.b1_A029 Roots minus mag... 106 1e-022
dbj|BD273071.1| Materials and methods for the modification ... 105 2e-022
>gb|DR019196.1|DR019196 STRS1_28_A02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_A02_A034 5', mRNA sequence
Length = 824
Score = 171 bits (368), Expect = 3e-042
Identities = 66/89 (74%), Positives = 69/89 (77%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL M RV TVEAH GY FPWS S PLYGG+DFHDY
Sbjct: 550 LFLGFATIIGPAITGPHLFTLWLWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDY 729
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDWLF TD GY
Sbjct: 730 HHRLLYTKSGNYSSTFTYMDWLFGTDKGY 816
Score = 104 bits (222), Expect = 5e-022
Identities = 53/86 (61%), Positives = 57/86 (66%)
Frame = +1 / -1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV NNQSM* V+ *FPDFV S+R* *SWKS PPY+G F+ L GK *P ASTV T
Sbjct: 806 SVPNNQSM*VKVDE*FPDFV*SSR***SWKSAPPYNGNSFEMLQGKS*PQCASTVSNTRK 627
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
S VNR*GPV A VA PRNK
Sbjct: 626 LIHSQSVNR*GPVMAGPIIVAKPRNK 549
>gb|DR079131.1|DR079131 RTFEPL1_9_F09.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_9_F09_A029 3', mRNA sequence
Length = 812
Score = 171 bits (368), Expect = 3e-042
Identities = 66/89 (74%), Positives = 69/89 (77%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL M RV TVEAH GY FPWS S PLYGG+DFHDY
Sbjct: 32 LFLGFATIIGPAITGPHLFTLWLWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDY 211
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDWLF TD GY
Sbjct: 212 HHRLLYTKSGNYSSTFTYMDWLFGTDKGY 298
Score = 107 bits (228), Expect = 7e-023
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = +1 / -3
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV NNQSM* V+ *FPDFV S+R* *SWKS PPY+G F+ L GK *P ASTV T
Sbjct: 288 SVPNNQSM*VKVDE*FPDFV*SSR***SWKSAPPYNGNSFEMLQGKS*PQCASTVSNTRK 109
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
S VNR*GPV A VANPRNK
Sbjct: 108 LIHSQSVNR*GPVMAGPIIVANPRNK 31
>gb|DR079207.1|DR079207 RTFEPL1_9_F09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_9_F09_A029 5', mRNA sequence
Length = 804
Score = 171 bits (368), Expect = 3e-042
Identities = 66/89 (74%), Positives = 69/89 (77%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL M RV TVEAH GY FPWS S PLYGG+DFHDY
Sbjct: 259 LFLGFATIIGPAITGPHLFTLWLWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDY 438
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDWLF TD GY
Sbjct: 439 HHRLLYTKSGNYSSTFTYMDWLFGTDKGY 525
Score = 107 bits (228), Expect = 7e-023
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV NNQSM* V+ *FPDFV S+R* *SWKS PPY+G F+ L GK *P ASTV T
Sbjct: 515 SVPNNQSM*VKVDE*FPDFV*SSR***SWKSAPPYNGNSFEMLQGKS*PQCASTVSNTRK 336
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
S VNR*GPV A VANPRNK
Sbjct: 335 LIHSQSVNR*GPVMAGPIIVANPRNK 258
>gb|DR179202.1|DR179202 RTMNUT1_16_D10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_D10_A029 5', mRNA sequence
Length = 761
Score = 171 bits (368), Expect = 3e-042
Identities = 66/89 (74%), Positives = 69/89 (77%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL M RV TVEAH GY FPWS S PLYGG+DFHDY
Sbjct: 261 LFLGFATIIGPAITGPHLFTLWLWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDY 440
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDWLF TD GY
Sbjct: 441 HHRLLYTKSGNYSSTFTYMDWLFGTDKGY 527
Score = 104 bits (222), Expect = 5e-022
Identities = 53/86 (61%), Positives = 57/86 (66%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV NNQSM* V+ *FPDFV S+R* *SWKS PPY+G F+ L GK *P ASTV T
Sbjct: 517 SVPNNQSM*VKVDE*FPDFV*SSR***SWKSAPPYNGNSFEMLQGKS*PQCASTVSNTRK 338
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
S VNR*GPV A VA PRNK
Sbjct: 337 LIHSQSVNR*GPVMAGPIIVAKPRNK 260
>gb|DR681790.1|DR681790 EST1071865 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA171 3' end, mRNA sequence
Length = 729
Score = 171 bits (368), Expect = 3e-042
Identities = 66/89 (74%), Positives = 69/89 (77%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL M RV TVEAH GY FPWS S PLYGG+DFHDY
Sbjct: 266 LFLGFATIIGPAITGPHLFTLWLWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDY 445
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDWLF TD GY
Sbjct: 446 HHRLLYTKSGNYSSTFTYMDWLFGTDKGY 532
Score = 104 bits (222), Expect = 5e-022
Identities = 53/86 (61%), Positives = 57/86 (66%)
Frame = +1 / -1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV NNQSM* V+ *FPDFV S+R* *SWKS PPY+G F+ L GK *P ASTV T
Sbjct: 522 SVPNNQSM*VKVDE*FPDFV*SSR***SWKSAPPYNGNSFEMLQGKS*PQCASTVSNTRK 343
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
S VNR*GPV A VA PRNK
Sbjct: 342 LIHSQSVNR*GPVMAGPIIVAKPRNK 265
>gb|DR694320.1|DR694320 EST1084412 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEA88 3' end, mRNA sequence
Length = 823
Score = 171 bits (368), Expect = 3e-042
Identities = 66/89 (74%), Positives = 69/89 (77%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL M RV TVEAH GY FPWS S PLYGG+DFHDY
Sbjct: 546 LFLGFATIIGPAITGPHLFTLWLWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDY 725
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDWLF TD GY
Sbjct: 726 HHRLLYTKSGNYSSTFTYMDWLFGTDKGY 812
Score = 107 bits (228), Expect = 7e-023
Identities = 54/86 (62%), Positives = 58/86 (67%)
Frame = +1 / -1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV NNQSM* V+ *FPDFV S+R* *SWKS PPY+G F+ L GK *P ASTV T
Sbjct: 802 SVPNNQSM*VKVDE*FPDFV*SSR***SWKSAPPYNGNSFEMLQGKS*PQCASTVSNTRK 623
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
S VNR*GPV A VANPRNK
Sbjct: 622 LIHSQSVNR*GPVMAGPIIVANPRNK 545
>gb|DR120277.1|DR120277 RTMG1_28_D11.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_28_D11_A029 5', mRNA sequence
Length = 519
Score = 163 bits (350), Expect = 1e-039
Identities = 64/89 (71%), Positives = 67/89 (75%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL M RV TVEAH GY FPWS S PLYGG+DF Y
Sbjct: 239 LFLGFATIIGPAITGPHLFTLWLWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFFFY 418
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDWLF TD GY
Sbjct: 419 HHRLLYTKSGNYSSTFTYMDWLFGTDKGY 505
>dbj|BD273072.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 362
Score = 154 bits (330), Expect = 6e-037
Identities = 57/75 (76%), Positives = 60/75 (80%)
Frame = -3 / +2
Query: 506 GPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYAS 327
GPHLFT WL M RV TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+S
Sbjct: 2 GPHLFTLWLWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSS 181
Query: 326 TFVYMDWLFRTDNGY 282
TF YMDWLF TD GY
Sbjct: 182 TFTYMDWLFGTDKGY 226
>gb|DR179128.1|DR179128 RTMNUT1_16_D10.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_D10_A029 3', mRNA sequence
Length = 786
Score = 148 bits (317), Expect = 4e-035
Identities = 55/73 (75%), Positives = 58/73 (79%)
Frame = -3 / +1
Query: 500 HLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTF 321
HLFT WL M RV TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF
Sbjct: 1 HLFTLWLWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTF 180
Query: 320 VYMDWLFRTDNGY 282
YMDWLF TD GY
Sbjct: 181 TYMDWLFGTDKGY 219
>gb|DR684177.1|DR684177 EST1074254 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAP73 3' end, mRNA sequence
Length = 820
Score = 136 bits (292), Expect = 1e-031
Identities = 53/73 (72%), Positives = 56/73 (76%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL M RV TVEAH GY FPWS S PLYGG+DFHDY
Sbjct: 602 LFLGFATIIGPAITGPHLFTLWLWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDY 781
Query: 368 HHRVLYTKSGNYA 330
HHR+LYTKSGNY+
Sbjct: 782 HHRLLYTKSGNYS 820
>gb|DR081782.1|DR081782 RTFEPL1_32_F04.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_32_F04_A029 3', mRNA sequence
Length = 705
Score = 116 bits (248), Expect = 1e-025
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = -3 / +1
Query: 437 GYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF YMDWLF TD GY
Sbjct: 1 GYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDWLFGTDKGY 156
>gb|CF663414.1|CF663414 RTCNT1_2_E05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_2_E05_A029 5', mRNA sequence
Length = 790
Score = 106 bits (226), Expect = 1e-022
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T W +V R +E HSGY FPW+ + +P YGG+++HDY
Sbjct: 520 LILGIPTFVGPAIAPGHMITFWFWVVLRQVEAIETHSGYDFPWTLTKLIPFYGGAEYHDY 699
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 700 HHYVGGQSQSNFASVFTYCDYLYGTDKGY 786
>gb|CO175343.1|CO175343 NDL1_54_D01.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_54_D01_A029 3', mRNA sequence
Length = 687
Score = 106 bits (226), Expect = 1e-022
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T W +V R +E HSGY FPW+ + +P YGG+++HDY
Sbjct: 34 LILGIPTFVGPAIAPGHMITFWFWVVLRQVEAIETHSGYDFPWTLTKLIPFYGGAEYHDY 213
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 214 HHYVGGQSQSNFASVFTYCDYLYGTDKGY 300
>gb|CO175416.1|CO175416 NDL1_54_D01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_54_D01_A029 5', mRNA sequence
Length = 709
Score = 106 bits (226), Expect = 1e-022
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T W +V R +E HSGY FPW+ + +P YGG+++HDY
Sbjct: 418 LILGIPTFVGPAIAPGHMITFWFWVVLRQVEAIETHSGYDFPWTLTKLIPFYGGAEYHDY 597
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 598 HHYVGGQSQSNFASVFTYCDYLYGTDKGY 684
>gb|CO366765.1|CO366765 RTK1_29_H12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_H12_A029 5', mRNA sequence
Length = 789
Score = 106 bits (226), Expect = 1e-022
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -3 / -2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T W +V R +E HSGY FPW+ + +P YGG+++HDY
Sbjct: 758 LILGIPTFVGPAIAPGHMITFWFWVVLRQVEAIETHSGYDFPWTLTKLIPFYGGAEYHDY 579
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 578 HHYVGGQSQSNFASVFTYCDYLYGTDKGY 492
>gb|CV031633.1|CV031633 RTNACL1_2_F07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_F07_A029 5', mRNA sequence
Length = 788
Score = 106 bits (226), Expect = 1e-022
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T W +V R +E HSGY FPW+ + +P YGG+++HDY
Sbjct: 401 LILGIPTFVGPAIAPGHMITFWFWVVLRQVEAIETHSGYDFPWTLTKLIPFYGGAEYHDY 580
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 581 HHYVGGQSQSNFASVFTYCDYLYGTDKGY 667
>gb|CX647228.1|CX647228 COLD1_14_B03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_14_B03_A029 5', mRNA sequence
Length = 638
Score = 106 bits (226), Expect = 1e-022
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -3 / -2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T W +V R +E HSGY FPW+ + +P YGG+++HDY
Sbjct: 622 LILGIPTFVGPAIAPGHMITFWFWVVLRQVEAIETHSGYDFPWTLTKLIPFYGGAEYHDY 443
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 442 HHYVGGQSQSNFASVFTYCDYLYGTDKGY 356
>gb|DR092962.1|DR092962 STRR1_5_E03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_E03_A033 3', mRNA sequence
Length = 823
Score = 106 bits (226), Expect = 1e-022
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T W +V R +E HSGY FPW+ + +P YGG+++HDY
Sbjct: 94 LILGIPTFVGPAIAPGHMITFWFWVVLRQVEAIETHSGYDFPWTLTKLIPFYGGAEYHDY 273
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 274 HHYVGGQSQSNFASVFTYCDYLYGTDKGY 360
>gb|DR093044.1|DR093044 STRR1_5_E03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_E03_A033 5', mRNA sequence
Length = 894
Score = 106 bits (226), Expect = 1e-022
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T W +V R +E HSGY FPW+ + +P YGG+++HDY
Sbjct: 575 LILGIPTFVGPAIAPGHMITFWFWVVLRQVEAIETHSGYDFPWTLTKLIPFYGGAEYHDY 754
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 755 HHYVGGQSQSNFASVFTYCDYLYGTDKGY 841
>gb|DR118494.1|DR118494 RTMG1_17_H05.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_H05_A029 3', mRNA sequence
Length = 814
Score = 106 bits (226), Expect = 1e-022
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T W +V R +E HSGY FPW+ + +P YGG+++HDY
Sbjct: 117 LILGIPTFVGPAIAPGHMITFWFWVVLRQVEAIETHSGYDFPWTLTKLIPFYGGAEYHDY 296
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 297 HHYVGGQSQSNFASVFTYCDYLYGTDKGY 383
>dbj|BD273071.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 631
Score = 105 bits (225), Expect = 2e-022
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T W +V R +E HSGY FPW+ + +P YGG+++HDY
Sbjct: 259 LILGIPTFVGPAIAPGHMITFWCWVVLRQVEAIETHSGYDFPWTLTKLIPFYGGAEYHDY 438
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 439 HHYVGGQSQSNFASVFTYCDYLYGTDKGY 525
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 249,677,470
Number of Sequences: 355925
Number of extensions: 3211367
Number of successful extensions: 40954
Number of sequences better than 1.0e-020: 21
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7326931950
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)