TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619548.2.1
(691 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX248947.1|BX248947 BX248947 Pinus pinaster differenciat... 273 1e-072
gb|BX249705.1|BX249705 BX249705 Pinus pinaster differenciat... 273 1e-072
gb|BX252578.1|BX252578 BX252578 Pinus pinaster differenciat... 273 1e-072
gb|BX253886.1|BX253886 BX253886 Pinus pinaster differenciat... 273 1e-072
gb|BX255547.1|BX255547 BX255547 Pinus pinaster differenciat... 273 1e-072
gb|BQ291015.1|BQ291015 NXRV054_E11_F NXRV (Nsf Xylem Root w... 271 3e-072
gb|CX715269.1|CX715269 RTPQ1_33_B11.b1_A032 Roots treated w... 271 3e-072
gb|DR387646.1|DR387646 RTHG1_23_E10.b1_A029 Roots plus adde... 271 3e-072
gb|DR387724.1|DR387724 RTHG1_23_E10.g2_A029 Roots plus adde... 271 3e-072
gb|BX250663.1|BX250663 BX250663 Pinus pinaster differenciat... 270 7e-072
gb|BX677322.1|BX677322 BX677322 RN Pinus pinaster cDNA clon... 270 7e-072
gb|DR013608.1|DR013608 HEAT1_20_H04.b1_A029 Root at 37 C fo... 269 2e-071
gb|DR385428.1|DR385428 RTHG1_8_D02.g1_A029 Roots plus added... 269 2e-071
gb|DR386621.1|DR386621 RTHG1_16_H12.b1_A029 Roots plus adde... 269 2e-071
gb|DR386817.1|DR386817 RTHG1_17_D05.g1_A029 Roots plus adde... 269 2e-071
gb|BX249288.1|BX249288 BX249288 Pinus pinaster differenciat... 268 3e-071
gb|BX667544.1|BX667544 BX667544 RN Pinus pinaster cDNA clon... 268 3e-071
gb|DR013688.1|DR013688 HEAT1_20_H04.g1_A029 Root at 37 C fo... 267 7e-071
gb|DR097417.1|DR097417 STRR1_34_C01.g3_A033 Stem Response R... 267 7e-071
gb|BF777970.1|BF777970 NXSI_079_D10_F NXSI (Nsf Xylem Side ... 266 9e-071
gb|BG039395.1|BG039395 NXSI_098_E10_F NXSI (Nsf Xylem Side ... 266 9e-071
gb|BG275739.1|BG275739 NXSI_145_D02_F NXSI (Nsf Xylem Side ... 266 9e-071
gb|BX676937.1|BX676937 BX676937 RN Pinus pinaster cDNA clon... 266 9e-071
gb|BQ290653.1|BQ290653 NXRV047_H09_F NXRV (Nsf Xylem Root w... 265 2e-070
gb|BG040412.1|BG040412 NXSI_108_A01_F NXSI (Nsf Xylem Side ... 264 3e-070
gb|BQ702743.1|BQ702743 NXSI_132_A12_F NXSI (Nsf Xylem Side ... 264 3e-070
gb|BQ699739.1|BQ699739 NXRV128_C07_F NXRV (Nsf Xylem Root w... 262 2e-069
gb|BG275297.1|BG275297 NXSI_142_B05_F NXSI (Nsf Xylem Side ... 262 2e-069
gb|AW985283.1|AW985283 NXNV_135_D03_F Nsf Xylem Normal wood... 260 8e-069
gb|DR384373.1|DR384373 RTHG1_1_G04.g1_A029 Roots plus added... 259 2e-068
gb|CX712546.1|CX712546 RTPQ1_3_E03.b2_A032 Roots treated wi... 258 3e-068
gb|DR384292.1|DR384292 RTHG1_1_G04.b1_A029 Roots plus added... 258 4e-068
gb|CX712625.1|CX712625 RTPQ1_3_E03.g1_A032 Roots treated wi... 256 1e-067
gb|BG039741.1|BG039741 NXSI_103_E05_F NXSI (Nsf Xylem Side ... 255 2e-067
gb|AW043150.1|AW043150 ST29H12 Pine TriplEx shoot tip libra... 255 3e-067
gb|DR097342.1|DR097342 STRR1_34_C01.b1_A033 Stem Response R... 254 5e-067
gb|BF517570.1|BF517570 NXSI_026_B07_F NXSI (Nsf Xylem Side ... 253 1e-066
gb|BF609742.1|BF609742 NXSI_048_H06_F NXSI (Nsf Xylem Side ... 252 2e-066
gb|BF010697.1|BF010697 NXCI_066_D05_F NXCI (Nsf Xylem Compr... 250 6e-066
gb|CR394462.1|CR394462 CR394462 RN Pinus pinaster cDNA clon... 243 1e-063
gb|BX255612.1|BX255612 BX255612 Pinus pinaster differenciat... 242 2e-063
gb|BF517130.1|BF517130 NXSI_009_G11_F NXSI (Nsf Xylem Side ... 240 9e-063
gb|BE762025.1|BE762025 NXCI_076_B04_F NXCI (Nsf Xylem Compr... 238 2e-062
gb|AW981694.1|AW981694 PC15F02 Pine TriplEx pollen cone lib... 134 5e-062
gb|BX682457.1|BX682457 BX682457 Pinus pinaster differenciat... 237 6e-062
gb|BQ701976.1|BQ701976 NXSI_122_H02_F NXSI (Nsf Xylem Side ... 232 1e-060
gb|DR682025.1|DR682025 EST1072100 Normalized pine embryo li... 226 2e-058
gb|DR682026.1|DR682026 EST1072101 Normalized pine embryo li... 226 2e-058
gb|BQ699273.1|BQ699273 NXRV121_F03_F NXRV (Nsf Xylem Root w... 207 6e-056
gb|AW981749.1|AW981749 PC18C01 Pine TriplEx pollen cone lib... 153 7e-054
gb|BQ634458.1|BQ634458 NXRV069_B09_F NXRV (Nsf Xylem Root w... 186 3e-051
gb|AA557107.1|AA557107 949 Loblolly pine N Pinus taeda cDNA... 167 5e-051
gb|CR392530.1|CR392530 CR392530 RN Pinus pinaster cDNA clon... 199 2e-050
gb|DR094147.1|DR094147 STRR1_12_F02.g1_A033 Stem Response R... 190 1e-047
gb|CR394394.1|CR394394 CR394394 RN Pinus pinaster cDNA clon... 188 3e-047
gb|BX253489.1|BX253489 BX253489 Pinus pinaster differenciat... 183 8e-046
gb|BE209354.1|BE209354 NXNV_166_G05_F Nsf Xylem Normal wood... 180 1e-044
gb|BM133330.1|BM133330 NXLV_004_A07_F NXLV (Nsf Xylem Late ... 179 1e-044
gb|BX681171.1|BX681171 BX681171 RS Pinus pinaster cDNA clon... 126 1e-041
gb|BM492793.1|BM492793 NXRV_031_B05_F NXRV (Nsf Xylem Root ... 164 5e-040
gb|BF609354.1|BF609354 NXSI_045_C11_F NXSI (Nsf Xylem Side ... 157 6e-038
gb|AW290226.1|AW290226 NXNV015D07F Nsf Xylem Normal wood Ve... 150 1e-035
gb|CD026856.1|CD026856 NXNV015D07 Nsf Xylem Normal wood Ver... 150 1e-035
gb|AW064852.1|AW064852 ST36F03 Pine TriplEx shoot tip libra... 134 1e-033
gb|AW754980.1|AW754980 PC09B02 Pine TriplEx pollen cone lib... 128 3e-029
gb|BQ655215.1|BQ655215 NXRV091_E09_F NXRV (Nsf Xylem Root w... 125 4e-028
gb|BM428059.1|BM428059 NXRV_008_C04_F NXRV (Nsf Xylem Root ... 123 1e-027
gb|BQ634511.1|BQ634511 NXRV069_H01_F NXRV (Nsf Xylem Root w... 90 6e-026
gb|DN629401.1|DN629401 EST980217 Subtracted pine embryo lib... 116 2e-025
gb|BE762167.1|BE762167 NXCI_082_G08_F NXCI (Nsf Xylem Compr... 115 4e-025
gb|DT629796.1|DT629796 EST1154208 Subtracted pine embryo li... 114 8e-025
gb|DT630082.1|DT630082 EST1154494 Subtracted pine embryo li... 114 8e-025
gb|DN629125.1|DN629125 EST979941 Subtracted pine embryo lib... 112 3e-024
gb|DN630723.1|DN630723 EST981539 Subtracted pine embryo lib... 112 3e-024
gb|DR386700.1|DR386700 RTHG1_16_H12.g1_A029 Roots plus adde... 108 4e-023
gb|BX784111.1|BX784111 BX784111 Pinus pinaster differenciat... 106 2e-022
gb|CD023432.1|CD023432 NXPV_126_C08_F NXPV (Nsf Xylem Plani... 104 8e-022
gb|BI644005.1|BI644005 NXPV_138_D12_F NXPV (Nsf Xylem Plani... 102 2e-021
>gb|BX248947.1|BX248947 BX248947 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP003A06 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 514
Score = 273 bits (590), Expect = 1e-072
Identities = 114/140 (81%), Positives = 125/140 (89%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 75 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 254
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLDI+
Sbjct: 255 SNKKTRHYLPNGFKKFVVHNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDIL 434
Query: 419 VTNKLARLRSQEDE*NVE*F 478
VTNKLA+LRSQEDE* V F
Sbjct: 435 VTNKLAKLRSQEDE*LVTVF 494
Score = 57.4 bits (119), Expect(3) = 3e-021
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = -2 / -1
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
GR*CLVFL +P P+ GI+ HPLN LTRESIP
Sbjct: 283 GR*CLVFLLDP*PIFGIRAHPLNFLLTRESIP 188
Score = 48.3 bits (99), Expect(3) = 3e-021
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = -2 / -1
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VT +SSCAARSTI+ +TL AISAQ VLLCI
Sbjct: 439 VTRISSCAARSTIAFLFNDETLCAISAQYVLLCI 338
Score = 33.6 bits (67), Expect(3) = 3e-021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -2 / -1
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN L FFTIF S G AIF
Sbjct: 139 GLLNFLMRFFTIFLFSRGVAIF 74
>gb|BX249705.1|BX249705 BX249705 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP027D03 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 670
Score = 273 bits (590), Expect = 1e-072
Identities = 114/140 (81%), Positives = 125/140 (89%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 99 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 278
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLDI+
Sbjct: 279 SNKKTRHYLPNGFKKFVVHNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDIL 458
Query: 419 VTNKLARLRSQEDE*NVE*F 478
VTNKLA+LRSQEDE* V F
Sbjct: 459 VTNKLAKLRSQEDE*LVTVF 518
Score = 57.4 bits (119), Expect(3) = 3e-021
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = -2 / -1
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
GR*CLVFL +P P+ GI+ HPLN LTRESIP
Sbjct: 307 GR*CLVFLLDP*PIFGIRAHPLNFLLTRESIP 212
Score = 48.3 bits (99), Expect(3) = 3e-021
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = -2 / -1
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VT +SSCAARSTI+ +TL AISAQ VLLCI
Sbjct: 463 VTRISSCAARSTIAFLFNDETLCAISAQYVLLCI 362
Score = 33.6 bits (67), Expect(3) = 3e-021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -2 / -1
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN L FFTIF S G AIF
Sbjct: 163 GLLNFLMRFFTIFLFSRGVAIF 98
>gb|BX252578.1|BX252578 BX252578 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP066G01 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 594
Score = 273 bits (590), Expect = 1e-072
Identities = 114/140 (81%), Positives = 125/140 (89%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 31 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 210
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLDI+
Sbjct: 211 SNKKTRHYLPNGFKKFVVHNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDIL 390
Query: 419 VTNKLARLRSQEDE*NVE*F 478
VTNKLA+LRSQEDE* V F
Sbjct: 391 VTNKLAKLRSQEDE*LVTVF 450
Score = 57.4 bits (119), Expect(3) = 3e-021
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = -2 / -2
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
GR*CLVFL +P P+ GI+ HPLN LTRESIP
Sbjct: 239 GR*CLVFLLDP*PIFGIRAHPLNFLLTRESIP 144
Score = 48.3 bits (99), Expect(3) = 3e-021
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = -2 / -2
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VT +SSCAARSTI+ +TL AISAQ VLLCI
Sbjct: 395 VTRISSCAARSTIAFLFNDETLCAISAQYVLLCI 294
Score = 33.6 bits (67), Expect(3) = 3e-021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -2 / -2
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN L FFTIF S G AIF
Sbjct: 95 GLLNFLMRFFTIFLFSRGVAIF 30
>gb|BX253886.1|BX253886 BX253886 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP090A03 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 485
Score = 273 bits (590), Expect = 1e-072
Identities = 114/140 (81%), Positives = 125/140 (89%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 46 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 225
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLDI+
Sbjct: 226 SNKKTRHYLPNGFKKFVVHNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDIL 405
Query: 419 VTNKLARLRSQEDE*NVE*F 478
VTNKLA+LRSQEDE* V F
Sbjct: 406 VTNKLAKLRSQEDE*LVTVF 465
Score = 57.4 bits (119), Expect(3) = 3e-021
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = -2 / -1
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
GR*CLVFL +P P+ GI+ HPLN LTRESIP
Sbjct: 254 GR*CLVFLLDP*PIFGIRAHPLNFLLTRESIP 159
Score = 48.3 bits (99), Expect(3) = 3e-021
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = -2 / -1
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VT +SSCAARSTI+ +TL AISAQ VLLCI
Sbjct: 410 VTRISSCAARSTIAFLFNDETLCAISAQYVLLCI 309
Score = 33.6 bits (67), Expect(3) = 3e-021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -2 / -1
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN L FFTIF S G AIF
Sbjct: 110 GLLNFLMRFFTIFLFSRGVAIF 45
>gb|BX255547.1|BX255547 BX255547 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007A09 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 700
Score = 273 bits (590), Expect = 1e-072
Identities = 114/140 (81%), Positives = 125/140 (89%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 214 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 393
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLDI+
Sbjct: 394 SNKKTRHYLPNGFKKFVVHNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDIL 573
Query: 419 VTNKLARLRSQEDE*NVE*F 478
VTNKLA+LRSQEDE* V F
Sbjct: 574 VTNKLAKLRSQEDE*LVTVF 633
Score = 57.4 bits (119), Expect(3) = 3e-021
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = -2 / -3
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
GR*CLVFL +P P+ GI+ HPLN LTRESIP
Sbjct: 422 GR*CLVFLLDP*PIFGIRAHPLNFLLTRESIP 327
Score = 48.3 bits (99), Expect(3) = 3e-021
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = -2 / -3
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VT +SSCAARSTI+ +TL AISAQ VLLCI
Sbjct: 578 VTRISSCAARSTIAFLFNDETLCAISAQYVLLCI 477
Score = 33.6 bits (67), Expect(3) = 3e-021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN L FFTIF S G AIF
Sbjct: 278 GLLNFLMRFFTIFLFSRGVAIF 213
>gb|BQ291015.1|BQ291015 NXRV054_E11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV054_E11 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 736
Score = 271 bits (587), Expect = 3e-072
Identities = 111/136 (81%), Positives = 124/136 (91%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 13 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 192
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDIV
Sbjct: 193 SNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDIV 372
Query: 419 VTNKLARLRSQEDE*N 466
VTNKLA+LRSQEDE*N
Sbjct: 373 VTNKLAKLRSQEDE*N 420
Score = 54.2 bits (112), Expect(3) = 9e-021
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = -2 / -3
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
G+*CLVFL +P P+LGI+ PLN LTRESIP
Sbjct: 221 GK*CLVFLLDP*PILGIRAQPLNFLLTRESIP 126
Score = 51.5 bits (106), Expect(3) = 9e-021
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = -2 / -3
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VTT+SSCAARSTI V+TL A SAQ VLLCI
Sbjct: 377 VTTISSCAARSTIDFLFNVETLCATSAQNVLLCI 276
Score = 31.8 bits (63), Expect(3) = 9e-021
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2 / -3
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN T FFTIF G AIF
Sbjct: 77 GLLNFFTRFFTIFLFMRGIAIF 12
>gb|CX715269.1|CX715269 RTPQ1_33_B11.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_B11_A032 3', mRNA sequence
Length = 807
Score = 271 bits (587), Expect = 3e-072
Identities = 111/136 (81%), Positives = 124/136 (91%)
Frame = +2 / -3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 760 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 581
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDIV
Sbjct: 580 SNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDIV 401
Query: 419 VTNKLARLRSQEDE*N 466
VTNKLA+LRSQEDE*N
Sbjct: 400 VTNKLAKLRSQEDE*N 353
Score = 54.2 bits (112), Expect(3) = 9e-021
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = -2 / +3
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
G+*CLVFL +P P+LGI+ PLN LTRESIP
Sbjct: 552 GK*CLVFLLDP*PILGIRAQPLNFLLTRESIP 647
Score = 51.5 bits (106), Expect(3) = 9e-021
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = -2 / +3
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VTT+SSCAARSTI V+TL A SAQ VLLCI
Sbjct: 396 VTTISSCAARSTIDFLFNVETLCATSAQNVLLCI 497
Score = 31.8 bits (63), Expect(3) = 9e-021
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2 / +3
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN T FFTIF G AIF
Sbjct: 696 GLLNFFTRFFTIFLFMRGIAIF 761
>gb|DR387646.1|DR387646 RTHG1_23_E10.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_23_E10_A029 3', mRNA sequence
Length = 831
Score = 271 bits (587), Expect = 3e-072
Identities = 111/136 (81%), Positives = 124/136 (91%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 37 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 216
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDIV
Sbjct: 217 SNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDIV 396
Query: 419 VTNKLARLRSQEDE*N 466
VTNKLA+LRSQEDE*N
Sbjct: 397 VTNKLAKLRSQEDE*N 444
Score = 54.2 bits (112), Expect(3) = 9e-021
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = -2 / -2
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
G+*CLVFL +P P+LGI+ PLN LTRESIP
Sbjct: 245 GK*CLVFLLDP*PILGIRAQPLNFLLTRESIP 150
Score = 51.5 bits (106), Expect(3) = 9e-021
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = -2 / -2
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VTT+SSCAARSTI V+TL A SAQ VLLCI
Sbjct: 401 VTTISSCAARSTIDFLFNVETLCATSAQNVLLCI 300
Score = 31.8 bits (63), Expect(3) = 9e-021
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2 / -2
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN T FFTIF G AIF
Sbjct: 101 GLLNFFTRFFTIFLFMRGIAIF 36
>gb|DR387724.1|DR387724 RTHG1_23_E10.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_23_E10_A029 5', mRNA sequence
Length = 610
Score = 271 bits (587), Expect = 3e-072
Identities = 111/136 (81%), Positives = 124/136 (91%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 34 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 213
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDIV
Sbjct: 214 SNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDIV 393
Query: 419 VTNKLARLRSQEDE*N 466
VTNKLA+LRSQEDE*N
Sbjct: 394 VTNKLAKLRSQEDE*N 441
Score = 54.2 bits (112), Expect(3) = 9e-021
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = -2 / -3
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
G+*CLVFL +P P+LGI+ PLN LTRESIP
Sbjct: 242 GK*CLVFLLDP*PILGIRAQPLNFLLTRESIP 147
Score = 51.5 bits (106), Expect(3) = 9e-021
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = -2 / -3
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VTT+SSCAARSTI V+TL A SAQ VLLCI
Sbjct: 398 VTTISSCAARSTIDFLFNVETLCATSAQNVLLCI 297
Score = 31.8 bits (63), Expect(3) = 9e-021
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2 / -3
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN T FFTIF G AIF
Sbjct: 98 GLLNFFTRFFTIFLFMRGIAIF 33
>gb|BX250663.1|BX250663 BX250663 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP039G04 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 651
Score = 270 bits (584), Expect = 7e-072
Identities = 110/136 (80%), Positives = 124/136 (91%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 27 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 206
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDI+
Sbjct: 207 SNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDIL 386
Query: 419 VTNKLARLRSQEDE*N 466
VTNKLA+LRSQEDE*N
Sbjct: 387 VTNKLAKLRSQEDE*N 434
>gb|BX677322.1|BX677322 BX677322 RN Pinus pinaster cDNA clone RN20F04, mRNA sequence
Length = 439
Score = 270 bits (584), Expect = 7e-072
Identities = 110/136 (80%), Positives = 124/136 (91%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 25 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 204
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDI+
Sbjct: 205 SNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDIL 384
Query: 419 VTNKLARLRSQEDE*N 466
VTNKLA+LRSQEDE*N
Sbjct: 385 VTNKLAKLRSQEDE*N 432
>gb|DR013608.1|DR013608 HEAT1_20_H04.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_H04_A029 3', mRNA sequence
Length = 782
Score = 269 bits (581), Expect = 2e-071
Identities = 110/135 (81%), Positives = 123/135 (91%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 30 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 209
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 210 SNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 389
Query: 419 VTNKLARLRSQEDE* 463
VTNKLA+LRSQEDE*
Sbjct: 390 VTNKLAKLRSQEDE* 434
>gb|DR385428.1|DR385428 RTHG1_8_D02.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_D02_A029 5', mRNA sequence
Length = 852
Score = 269 bits (581), Expect = 2e-071
Identities = 110/135 (81%), Positives = 123/135 (91%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 67 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 246
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 247 SNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 426
Query: 419 VTNKLARLRSQEDE* 463
VTNKLA+LRSQEDE*
Sbjct: 427 VTNKLAKLRSQEDE* 471
>gb|DR386621.1|DR386621 RTHG1_16_H12.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_16_H12_A029 3', mRNA sequence
Length = 724
Score = 269 bits (581), Expect = 2e-071
Identities = 110/135 (81%), Positives = 123/135 (91%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 36 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 215
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 216 SNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 395
Query: 419 VTNKLARLRSQEDE* 463
VTNKLA+LRSQEDE*
Sbjct: 396 VTNKLAKLRSQEDE* 440
>gb|DR386817.1|DR386817 RTHG1_17_D05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_17_D05_A029 5', mRNA sequence
Length = 758
Score = 269 bits (581), Expect = 2e-071
Identities = 110/135 (81%), Positives = 123/135 (91%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 64 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 243
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 244 SNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 423
Query: 419 VTNKLARLRSQEDE* 463
VTNKLA+LRSQEDE*
Sbjct: 424 VTNKLAKLRSQEDE* 468
>gb|BX249288.1|BX249288 BX249288 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP022C07 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 664
Score = 268 bits (580), Expect = 3e-071
Identities = 112/138 (81%), Positives = 123/138 (89%)
Frame = +2 / +1
Query: 65 AVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSD 244
A PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYGS+
Sbjct: 1 ATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYGSN 180
Query: 245 KKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVT 424
KKTRHYLPN FKKFVVHNV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLDI+VT
Sbjct: 181 KKTRHYLPNGFKKFVVHNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDILVT 360
Query: 425 NKLARLRSQEDE*NVE*F 478
NKLA+LRSQEDE* V F
Sbjct: 361 NKLAKLRSQEDE*LVTVF 414
>gb|BX667544.1|BX667544 BX667544 RN Pinus pinaster cDNA clone RN09D02, mRNA sequence
Length = 506
Score = 268 bits (580), Expect = 3e-071
Identities = 112/138 (81%), Positives = 123/138 (89%)
Frame = +2 / +1
Query: 65 AVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSD 244
A PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYGS+
Sbjct: 1 ATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYGSN 180
Query: 245 KKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVT 424
KKTRHYLPN FKKFVVHNV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLDI+VT
Sbjct: 181 KKTRHYLPNGFKKFVVHNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDILVT 360
Query: 425 NKLARLRSQEDE*NVE*F 478
NKLA+LRSQEDE* V F
Sbjct: 361 NKLAKLRSQEDE*LVTVF 414
>gb|DR013688.1|DR013688 HEAT1_20_H04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_H04_A029 5', mRNA sequence
Length = 715
Score = 267 bits (577), Expect = 7e-071
Identities = 109/135 (80%), Positives = 123/135 (91%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
+MA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 3 EMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 182
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 183 SNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 362
Query: 419 VTNKLARLRSQEDE* 463
VTNKLA+LRSQEDE*
Sbjct: 363 VTNKLAKLRSQEDE* 407
>gb|DR097417.1|DR097417 STRR1_34_C01.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_C01_A033 5', mRNA sequence
Length = 716
Score = 267 bits (577), Expect = 7e-071
Identities = 109/135 (80%), Positives = 123/135 (91%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
+MA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 12 EMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 191
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 192 SNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 371
Query: 419 VTNKLARLRSQEDE* 463
VTNKLA+LRSQEDE*
Sbjct: 372 VTNKLAKLRSQEDE* 416
>gb|BF777970.1|BF777970 NXSI_079_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_079_D10 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 266 bits (576), Expect = 9e-071
Identities = 109/134 (81%), Positives = 122/134 (91%)
Frame = +2 / +2
Query: 62 MAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGS 241
MA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYGS
Sbjct: 23 MATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYGS 202
Query: 242 DKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVV 421
+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++V
Sbjct: 203 NKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVLV 382
Query: 422 TNKLARLRSQEDE* 463
TNKLA+LRSQEDE*
Sbjct: 383 TNKLAKLRSQEDE* 424
>gb|BG039395.1|BG039395 NXSI_098_E10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_098_E10 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 555
Score = 266 bits (576), Expect = 9e-071
Identities = 109/134 (81%), Positives = 122/134 (91%)
Frame = +2 / +2
Query: 62 MAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGS 241
MA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYGS
Sbjct: 23 MATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYGS 202
Query: 242 DKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVV 421
+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++V
Sbjct: 203 NKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVLV 382
Query: 422 TNKLARLRSQEDE* 463
TNKLA+LRSQEDE*
Sbjct: 383 TNKLAKLRSQEDE* 424
>gb|BG275739.1|BG275739 NXSI_145_D02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_145_D02 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 524
Score = 266 bits (576), Expect = 9e-071
Identities = 109/134 (81%), Positives = 122/134 (91%)
Frame = +2 / +2
Query: 62 MAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGS 241
MA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYGS
Sbjct: 23 MATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYGS 202
Query: 242 DKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVV 421
+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++V
Sbjct: 203 NKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVLV 382
Query: 422 TNKLARLRSQEDE* 463
TNKLA+LRSQEDE*
Sbjct: 383 TNKLAKLRSQEDE* 424
>gb|BX676937.1|BX676937 BX676937 RN Pinus pinaster cDNA clone RN14D01, mRNA sequence
Length = 515
Score = 266 bits (576), Expect = 9e-071
Identities = 111/136 (81%), Positives = 122/136 (89%)
Frame = +2 / +3
Query: 71 PLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 250
PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYGS+KK
Sbjct: 6 PLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYGSNKK 185
Query: 251 TRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNK 430
TRHYLPN FKKFVVHNV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLDI+VTNK
Sbjct: 186 TRHYLPNGFKKFVVHNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDILVTNK 365
Query: 431 LARLRSQEDE*NVE*F 478
LA+LRSQEDE* V F
Sbjct: 366 LAKLRSQEDE*LVTVF 413
>gb|BQ290653.1|BQ290653 NXRV047_H09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV047_H09 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 771
Score = 265 bits (574), Expect = 2e-070
Identities = 109/135 (80%), Positives = 122/135 (90%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 142 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 321
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 322 SNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 501
Query: 419 VTNKLARLRSQEDE* 463
VT KLA+LRSQEDE*
Sbjct: 502 VTXKLAKLRSQEDE* 546
>gb|BG040412.1|BG040412 NXSI_108_A01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_108_A01 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 550
Score = 264 bits (572), Expect = 3e-070
Identities = 108/135 (80%), Positives = 121/135 (89%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 25 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 204
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 205 SNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 384
Query: 419 VTNKLARLRSQEDE* 463
VTNK +LRSQEDE*
Sbjct: 385 VTNKXXKLRSQEDE* 429
Score = 57.4 bits (119), Expect(3) = 5e-021
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = -2 / -3
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
GR*CLVFL +P P+ GI+ HPLN LTRESIP
Sbjct: 233 GR*CLVFLLDP*PIFGIRAHPLNFLLTRESIP 138
Score = 47.3 bits (97), Expect(3) = 5e-021
Identities = 23/34 (67%), Positives = 25/34 (73%)
Frame = -2 / -3
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VT SSCAARSTI+ +TL AISAQ VLLCI
Sbjct: 389 VTRTSSCAARSTIAFLFNDETLCAISAQYVLLCI 288
Score = 33.6 bits (67), Expect(3) = 5e-021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN L FFTIF S G AIF
Sbjct: 89 GLLNFLMRFFTIFLFSRGVAIF 24
>gb|BQ702743.1|BQ702743 NXSI_132_A12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_132_A12 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 467
Score = 264 bits (572), Expect = 3e-070
Identities = 108/133 (81%), Positives = 120/133 (90%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 25 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 204
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 205 SNKKTRHYLPNGFKKFVVYNVHDLXLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 384
Query: 419 VTNKLARLRSQED 457
VTNKLA+LRSQED
Sbjct: 385 VTNKLAKLRSQED 423
Score = 57.4 bits (119), Expect(3) = 5e-021
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = -2 / -1
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
GR*CLVFL +P P+ GI+ HPLN LTRESIP
Sbjct: 233 GR*CLVFLLDP*PIFGIRAHPLNFLLTRESIP 138
Score = 47.3 bits (97), Expect(3) = 5e-021
Identities = 23/34 (67%), Positives = 25/34 (73%)
Frame = -2 / -1
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VT SSCAARSTI+ +TL AISAQ VLLCI
Sbjct: 389 VTRTSSCAARSTIAFLFNDETLCAISAQYVLLCI 288
Score = 33.6 bits (67), Expect(3) = 5e-021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -2 / -1
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN L FFTIF S G AIF
Sbjct: 89 GLLNFLMRFFTIFLFSRGVAIF 24
>gb|BQ699739.1|BQ699739 NXRV128_C07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_C07 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 658
Score = 262 bits (567), Expect = 2e-069
Identities = 108/136 (79%), Positives = 121/136 (88%)
Frame = +2 / +2
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 56 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 235
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+A NVST KRK I ERAAQLDIV
Sbjct: 236 SNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAXNVSTLKRKSIXERAAQLDIV 415
Query: 419 VTNKLARLRSQEDE*N 466
VTNKLA+LRSQED *N
Sbjct: 416 VTNKLAKLRSQEDX*N 463
>gb|BG275297.1|BG275297 NXSI_142_B05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_142_B05 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 533
Score = 262 bits (566), Expect = 2e-069
Identities = 107/136 (78%), Positives = 120/136 (88%)
Frame = +2 / +2
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 23 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 202
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDIV
Sbjct: 203 SNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDIV 382
Query: 419 VTNKLARLRSQEDE*N 466
VTNKL +LR Q E*N
Sbjct: 383 VTNKLXKLRXQXXE*N 430
Score = 54.2 bits (112), Expect(3) = 9e-021
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = -2 / -3
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
G+*CLVFL +P P+LGI+ PLN LTRESIP
Sbjct: 231 GK*CLVFLLDP*PILGIRAQPLNFLLTRESIP 136
Score = 51.5 bits (106), Expect(3) = 9e-021
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = -2 / -3
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VTT+SSCAARSTI V+TL A SAQ VLLCI
Sbjct: 387 VTTISSCAARSTIDFLFNVETLCATSAQNVLLCI 286
Score = 31.8 bits (63), Expect(3) = 9e-021
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2 / -3
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN T FFTIF G AIF
Sbjct: 87 GLLNFFTRFFTIFLFMRGIAIF 22
>gb|AW985283.1|AW985283 NXNV_135_D03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_135_D03 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 532
Score = 260 bits (562), Expect = 8e-069
Identities = 107/136 (78%), Positives = 120/136 (88%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 70 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 249
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST K K IVERAAQLDIV
Sbjct: 250 SNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKXKSIVERAAQLDIV 429
Query: 419 VTNKLARLRSQEDE*N 466
VTNKLA+LRS E*N
Sbjct: 430 VTNKLAKLRSXXXE*N 477
Score = 54.2 bits (112), Expect(3) = 9e-021
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = -2 / -3
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
G+*CLVFL +P P+LGI+ PLN LTRESIP
Sbjct: 278 GK*CLVFLLDP*PILGIRAQPLNFLLTRESIP 183
Score = 51.5 bits (106), Expect(3) = 9e-021
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = -2 / -3
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VTT+SSCAARSTI V+TL A SAQ VLLCI
Sbjct: 434 VTTISSCAARSTIDXXFNVETLCATSAQNVLLCI 333
Score = 31.8 bits (63), Expect(3) = 9e-021
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2 / -3
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN T FFTIF G AIF
Sbjct: 134 GLLNFFTRFFTIFLFMRGIAIF 69
>gb|DR384373.1|DR384373 RTHG1_1_G04.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_1_G04_A029 5', mRNA sequence
Length = 746
Score = 259 bits (559), Expect = 2e-068
Identities = 106/130 (81%), Positives = 118/130 (90%)
Frame = +2 / +2
Query: 77 LTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTR 256
+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYGS+KKTR
Sbjct: 2 MNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYGSNKKTR 181
Query: 257 HYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLA 436
HYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDIVVTNKLA
Sbjct: 182 HYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDIVVTNKLA 361
Query: 437 RLRSQEDE*N 466
+LRSQEDE*N
Sbjct: 362 KLRSQEDE*N 391
>gb|CX712546.1|CX712546 RTPQ1_3_E03.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_3_E03_A032 3', mRNA sequence
Length = 658
Score = 258 bits (558), Expect = 3e-068
Identities = 107/134 (79%), Positives = 120/134 (89%)
Frame = +2 / +2
Query: 77 LTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTR 256
L +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYGS+KKTR
Sbjct: 2 LNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYGSNKKTR 181
Query: 257 HYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLA 436
HYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++VTNKLA
Sbjct: 182 HYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVLVTNKLA 361
Query: 437 RLRSQEDE*NVE*F 478
+LRSQEDE* V F
Sbjct: 362 KLRSQEDE*LVTVF 403
>gb|DR384292.1|DR384292 RTHG1_1_G04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_1_G04_A029 3', mRNA sequence
Length = 732
Score = 258 bits (557), Expect = 4e-068
Identities = 106/128 (82%), Positives = 117/128 (91%)
Frame = +2 / +2
Query: 83 QKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHY 262
+KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYGS+KKTRHY
Sbjct: 5 KKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYGSNKKTRHY 184
Query: 263 LPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLARL 442
LPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDIVVTNKLA+L
Sbjct: 185 LPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDIVVTNKLAKL 364
Query: 443 RSQEDE*N 466
RSQEDE*N
Sbjct: 365 RSQEDE*N 388
>gb|CX712625.1|CX712625 RTPQ1_3_E03.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_3_E03_A032 5', mRNA sequence
Length = 676
Score = 256 bits (554), Expect = 1e-067
Identities = 106/132 (80%), Positives = 119/132 (90%)
Frame = +2 / +3
Query: 83 QKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHY 262
+KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYGS+KKTRHY
Sbjct: 6 RKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYGSNKKTRHY 185
Query: 263 LPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLARL 442
LPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++VTNKLA+L
Sbjct: 186 LPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVLVTNKLAKL 365
Query: 443 RSQEDE*NVE*F 478
RSQEDE* V F
Sbjct: 366 RSQEDE*LVTVF 401
>gb|BG039741.1|BG039741 NXSI_103_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_103_E05 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 517
Score = 255 bits (552), Expect = 2e-067
Identities = 106/135 (78%), Positives = 117/135 (86%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 46 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 225
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQ
Sbjct: 226 SNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQXXXX 405
Query: 419 VTNKLARLRSQEDE* 463
VTN A+LRSQEDE*
Sbjct: 406 VTNXXAKLRSQEDE* 450
>gb|AW043150.1|AW043150 ST29H12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST29H12, mRNA sequence
Length = 601
Score = 255 bits (551), Expect = 3e-067
Identities = 104/131 (79%), Positives = 117/131 (89%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 9 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 188
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV + +LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 189 SNKKTRHYLPNGFKKFVVYNVHDPDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 368
Query: 419 VTNKLARLRSQ 451
VTN LA+LRSQ
Sbjct: 369 VTNXLAKLRSQ 401
Score = 57.4 bits (119), Expect(3) = 5e-021
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = -2 / -1
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
GR*CLVFL +P P+ GI+ HPLN LTRESIP
Sbjct: 217 GR*CLVFLLDP*PIFGIRAHPLNFLLTRESIP 122
Score = 47.3 bits (97), Expect(3) = 5e-021
Identities = 23/34 (67%), Positives = 25/34 (73%)
Frame = -2 / -1
Query: 423 VTTMSSCAARSTISLRLRVDTLWAISAQ*VLLCI 322
VT SSCAARSTI+ +TL AISAQ VLLCI
Sbjct: 373 VTRTSSCAARSTIAFLFNDETLCAISAQYVLLCI 272
Score = 33.6 bits (67), Expect(3) = 5e-021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -2 / -1
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN L FFTIF S G AIF
Sbjct: 73 GLLNFLMRFFTIFLFSRGVAIF 8
>gb|DR097342.1|DR097342 STRR1_34_C01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_C01_A033 3', mRNA sequence
Length = 718
Score = 254 bits (549), Expect = 5e-067
Identities = 106/135 (78%), Positives = 119/135 (88%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR +K SWRRPKGIDSRV RKFKGC LMPNIGYG
Sbjct: 28 KMATPLLNRKIVKKRIKKFKRPQSDRGIWVKESWRRPKGIDSRVGRKFKGCALMPNIGYG 207
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 208 FNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 387
Query: 419 VTNKLARLRSQEDE* 463
VTNKLA+L SQEDE*
Sbjct: 388 VTNKLAKLGSQEDE* 432
>gb|BF517570.1|BF517570 NXSI_026_B07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_026_B07 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 481
Score = 253 bits (546), Expect = 1e-066
Identities = 104/136 (76%), Positives = 116/136 (85%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 45 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 224
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHN +L +MHN +CAE+AHNVST K K IVERAAQLDIV
Sbjct: 225 SNKKTRHYLPNXFKKFVVHNXKXXDLXMMHNXXFCAEVAHNVSTLKXKSIVERAAQLDIV 404
Query: 419 VTNKLARLRSQEDE*N 466
VTNKLA+LRSQE E*N
Sbjct: 405 VTNKLAKLRSQEXE*N 452
>gb|BF609742.1|BF609742 NXSI_048_H06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_048_H06 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 252 bits (545), Expect = 2e-066
Identities = 104/135 (77%), Positives = 116/135 (85%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 46 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 225
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L LL+MHN YCAEIAHNVS+ K IV RAAQLD++
Sbjct: 226 SNKKTRHYLPNGFKKFVVYNVHDLXLLMMHNXXYCAEIAHNVSSLKXXAIVXRAAQLDVL 405
Query: 419 VTNKLARLRSQEDE* 463
VTNKLA+LR QEDE*
Sbjct: 406 VTNKLAKLRXQEDE* 450
>gb|BF010697.1|BF010697 NXCI_066_D05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_066_D05 5' similar to Arabidopsis
thaliana sequence At4g18100 ribosomal protein L32 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 399
Score = 250 bits (541), Expect = 6e-066
Identities = 102/126 (80%), Positives = 113/126 (89%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 22 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 201
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVV+NV +L LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD++
Sbjct: 202 SNKKTRHYLPNGFKKFVVYNVHDLXLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDVL 381
Query: 419 VTNKLA 436
VTNKLA
Sbjct: 382 VTNKLA 399
>gb|CR394462.1|CR394462 CR394462 RN Pinus pinaster cDNA clone RN79F01, mRNA sequence
Length = 377
Score = 243 bits (524), Expect = 1e-063
Identities = 97/124 (78%), Positives = 111/124 (89%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 4 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 183
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKK+VVHNV +L+LL+MHNRT+CAE+AHNVST RK IVERAAQLDI+
Sbjct: 184 SNKKTRHYLPNGFKKYVVHNVKDLDLLMMHNRTFCAEVAHNVSTLPRKSIVERAAQLDIL 363
Query: 419 VTNK 430
VTNK
Sbjct: 364 VTNK 375
>gb|BX255612.1|BX255612 BX255612 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007G02 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 673
Score = 242 bits (523), Expect = 2e-063
Identities = 101/122 (82%), Positives = 109/122 (89%)
Frame = +2 / -3
Query: 113 FKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVV 292
FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYGS+KKTRHYLPN FKKFVV
Sbjct: 671 FKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYGSNKKTRHYLPNGFKKFVV 492
Query: 293 HNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE*NVE 472
HNV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLDI+VTNKLA+LRSQEDE* V
Sbjct: 491 HNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDILVTNKLAKLRSQEDE*LVT 312
Query: 473 *F 478
F
Sbjct: 311 VF 306
>gb|BF517130.1|BF517130 NXSI_009_G11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_009_G11 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 424
Score = 240 bits (518), Expect = 9e-063
Identities = 98/128 (76%), Positives = 111/128 (86%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LM NIGYG
Sbjct: 39 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMXNIGYG 218
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHN +L+LL+MH +CAE+AHNVST KRK IVERAAQLDIV
Sbjct: 219 SNKKTRHYLPNGFKKFVVHNXKDLDLLMMHXXXFCAEVAHNVSTLKRKSIVERAAQLDIV 398
Query: 419 VTNKLARL 442
VTNKLA+L
Sbjct: 399 VTNKLAKL 422
>gb|BE762025.1|BE762025 NXCI_076_B04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_076_B04 5' similar to Arabidopsis
thaliana sequence At4g18100 ribosomal protein L32 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 378
Score = 238 bits (515), Expect = 2e-062
Identities = 96/119 (80%), Positives = 107/119 (89%)
Frame = +2 / +1
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA PLL +KIVKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 22 KMATPLLNRKIVKKRIKKFKRPQSDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYG 201
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDI 415
S+KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ KRK IVERAAQLD+
Sbjct: 202 SNKKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLKRKAIVERAAQLDV 378
>gb|AW981694.1|AW981694 PC15F02 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC15F02, mRNA sequence
Length = 584
Score = 134 bits (288), Expect(2) = 5e-062
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR + +W RPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 69 KMAIPLMNKKIVKKRVKKFKRPXSDRXITVXENWXRPKGIDSRVRRKFKGCALMPNIGYG 248
Query: 239 SDKKTRHYLP 268
S+KKTRHYLP
Sbjct: 249 SNKKTRHYLP 278
Score = 123 bits (263), Expect(2) = 5e-062
Identities = 51/66 (77%), Positives = 58/66 (87%)
Frame = +2 / +2
Query: 269 NKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLARLRS 448
N FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDIV NKL +LR+
Sbjct: 278 NGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDIVGXNKLXKLRN 457
Query: 449 QEDE*N 466
QEDE N
Sbjct: 458 QEDEXN 475
Score = 52.8 bits (109), Expect(3) = 9e-021
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = -2 / -2
Query: 267 GR*CLVFLSEPYPMLGIKVHPLNLRLTRESIP 172
G+*CLVFL P P+LGI+ PLN LTRESIP
Sbjct: 277 GK*CLVFLLXP*PILGIRAQPLNFLLTRESIP 182
Score = 52.8 bits (109), Expect(3) = 9e-021
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = -1 / -2
Query: 466 ISLVLLAAEPGELVGDHDVQLRSTLHNLLALAGGHVVGDLSAVSPVVHQQQLQLGDIVNN 287
I L+LL + LV HDV+L S+L+N L +VV + S PVVH +++Q+ +I+ N
Sbjct: 475 IXLILLVTQLRXLVXPHDVKLCSSLYNRFPLQC*NVVCNFSTECPVVHHKKVQIFNIMYN 296
Query: 286 KLFE 275
KL +
Sbjct: 295 KLLK 284
Score = 31.8 bits (63), Expect(3) = 9e-021
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2 / -2
Query: 123 GLLNCLTLFFTIFCVSSGTAIF 58
GLLN T FFTIF G AIF
Sbjct: 133 GLLNFFTRFFTIFLFMRGIAIF 68
>gb|BX682457.1|BX682457 BX682457 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 116H06 similar to 60S ribosomal protein L32,
mRNA sequence
Length = 650
Score = 237 bits (512), Expect = 6e-062
Identities = 98/132 (74%), Positives = 113/132 (85%)
Frame = +2 / +1
Query: 71 PLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 250
P Q+ ++ ++ KRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYGS+KK
Sbjct: 52 PSHEQEDCEEAREEVKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYGSNKK 231
Query: 251 TRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNK 430
TRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST KRK IVERAAQLDI+VTNK
Sbjct: 232 TRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERAAQLDILVTNK 411
Query: 431 LARLRSQEDE*N 466
LA+LRSQEDE*N
Sbjct: 412 LAKLRSQEDE*N 447
>gb|BQ701976.1|BQ701976 NXSI_122_H02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_122_H02 5' similar to Arabidopsis thaliana
sequence At5g46430 ribosomal protein L32 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 421
Score = 232 bits (502), Expect = 1e-060
Identities = 94/125 (75%), Positives = 106/125 (84%)
Frame = +2 / +3
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 45 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 224
Query: 239 SDKKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIV 418
S+KKTRHYLPN FKKFVVHNV +L+LL+MHNRT+CAE+AHNVST K K IVERAAQ
Sbjct: 225 SNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNRTFCAEVAHNVSTLKXKSIVERAAQXXXX 404
Query: 419 VTNKL 433
NKL
Sbjct: 405 XXNKL 419
>gb|DR682025.1|DR682025 EST1072100 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA565, mRNA sequence
Length = 604
Score = 226 bits (487), Expect = 2e-058
Identities = 91/104 (87%), Positives = 99/104 (95%)
Frame = +2 / -2
Query: 155 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLLMHNR 334
+WRRPKGIDSRVRRKFKGC LMPNIGYGS+KKTRHYLPN FKKFVVHNV +L+LL+MHNR
Sbjct: 600 NWRRPKGIDSRVRRKFKGCALMPNIGYGSNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNR 421
Query: 335 TYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE*N 466
T+CAE+AHNVST KRK IVERAAQLDIVVTNKLA+LRSQEDE*N
Sbjct: 420 TFCAEVAHNVSTLKRKSIVERAAQLDIVVTNKLAKLRSQEDE*N 289
>gb|DR682026.1|DR682026 EST1072101 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA565 3' end, mRNA sequence
Length = 601
Score = 226 bits (487), Expect = 2e-058
Identities = 91/104 (87%), Positives = 99/104 (95%)
Frame = +2 / +2
Query: 155 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLLMHNR 334
+WRRPKGIDSRVRRKFKGC LMPNIGYGS+KKTRHYLPN FKKFVVHNV +L+LL+MHNR
Sbjct: 5 NWRRPKGIDSRVRRKFKGCALMPNIGYGSNKKTRHYLPNGFKKFVVHNVKDLDLLMMHNR 184
Query: 335 TYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE*N 466
T+CAE+AHNVST KRK IVERAAQLDIVVTNKLA+LRSQEDE*N
Sbjct: 185 TFCAEVAHNVSTLKRKSIVERAAQLDIVVTNKLAKLRSQEDE*N 316
>gb|BQ699273.1|BQ699273 NXRV121_F03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_F03 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 407
Score = 207 bits (447), Expect(2) = 6e-056
Identities = 83/109 (76%), Positives = 93/109 (85%)
Frame = +2 / +1
Query: 65 AVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSD 244
A PLL +K VKKR+K+FKRP DR C+K SWRRPKGIDSRVRRKFKGC LMPNIGYGS+
Sbjct: 34 ATPLLNRKXVKKRIKKFKRPQXDRRICVKESWRRPKGIDSRVRRKFKGCALMPNIGYGSN 213
Query: 245 KKTRHYLPNKFKKFVVHNVSELELLLMHNRTYCAEIAHNVSTRKRKEIV 391
KKTRHYLPN FKKFVV+NV +L+LL+MHNRTYCAEIAHNVS+ IV
Sbjct: 214 KKTRHYLPNGFKKFVVYNVHDLDLLMMHNRTYCAEIAHNVSSLXXXXIV 360
Score = 30.4 bits (60), Expect(2) = 6e-056
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +2 / +2
Query: 395 RAAQLDIVVTNKLA 436
RAAQLD++VTNKLA
Sbjct: 365 RAAQLDVLVTNKLA 406
>gb|AW981749.1|AW981749 PC18C01 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC18C01, mRNA sequence
Length = 477
Score = 153 bits (328), Expect(3) = 7e-054
Identities = 61/78 (78%), Positives = 68/78 (87%)
Frame = +2 / +2
Query: 59 KMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYG 238
KMA+PL+ +KIVKKRVK+FKRP DR +K +WRRPKGIDSRVRRKFKGC LMPNIGYG
Sbjct: 47 KMAIPLMNKKIVKKRVKKFKRPQSDRRITVKENWRRPKGIDSRVRRKFKGCALMPNIGYG 226
Query: 239 SDKKTRHYLPNKFKKFVV 292
S+KKTRHY PN FKKFVV
Sbjct: 227 SNKKTRHYSPNGFKKFVV 280
Score = 72.5 bits (152), Expect(3) = 7e-054
Identities = 28/39 (71%), Positives = 33/39 (84%)
Frame = +2 / +1
Query: 293 HNVSELELLLMHNRTYCAEIAHNVSTRKRKEIVERAAQL 409
HNV +L+LL+MHNRT+CAE+AHNVST KRK IVER L
Sbjct: 280 HNVKDLDLLMMHNRTFCAEVAHNVSTLKRKSIVERLHNL 396
Score = 24.0 bits (46), Expect(3) = 7e-054
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 401 AQLDIVVTNKL 433
AQLD VVTNKL
Sbjct: 387 AQLDXVVTNKL 419
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 322,078,873
Number of Sequences: 355925
Number of extensions: 3957972
Number of successful extensions: 42739
Number of sequences better than 1.0e-020: 115
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9543423165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)