TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619423.2.1
(886 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR102338.1|DR102338 STRR1_80_H10.b1_A033 Stem Response R... 215 1e-078
gb|DR099947.1|DR099947 STRR1_60_F09.b1_A033 Stem Response R... 215 1e-078
gb|BM493459.1|BM493459 NXLV_064_F10_F NXLV (Nsf Xylem Late ... 190 3e-070
gb|DR177768.1|DR177768 RTMNUT1_7_F07.b1_A029 Roots minus mi... 215 1e-068
gb|BF220601.1|BF220601 NXCI_149_C10_F NXCI (Nsf Xylem Compr... 204 5e-068
gb|DR057489.1|DR057489 RTNIT1_6_D02.b1_A029 Roots minus nit... 215 6e-068
gb|BE758619.1|BE758619 NXCI_069_B10_F NXCI (Nsf Xylem Compr... 203 2e-067
gb|CF474611.1|CF474611 RTWW2_9_E10.g1_A021 Well-watered lob... 150 2e-059
gb|DR057577.1|DR057577 RTNIT1_6_D02.g1_A029 Roots minus nit... 150 2e-059
gb|DR099998.1|DR099998 STRR1_60_F09.g1_A033 Stem Response R... 210 2e-057
gb|BM133887.1|BM133887 NXLV_013_F09_F NXLV (Nsf Xylem Late ... 204 1e-051
gb|BQ654555.1|BQ654555 NXRV082_B12_F NXRV (Nsf Xylem Root w... 111 7e-048
gb|BG318662.1|BG318662 NXPV_017_E08_F NXPV (Nsf Xylem Plani... 100 4e-032
gb|CF474499.1|CF474499 RTWW2_9_E10.b1_A021 Well-watered lob... 107 1e-022
gb|BX254084.1|BX254084 BX254084 Pinus pinaster differenciat... 75 3e-022
gb|DR053727.1|DR053727 RTCA1_13_A01.b1_A029 Roots minus cal... 66 1e-021
gb|DN463637.1|DN463637 EST959436 Sequencing ESTs from loblo... 66 1e-021
gb|CO364284.1|CO364284 RTK1_14_G03.g1_A029 Roots minus pota... 66 1e-021
>gb|DR102338.1|DR102338 STRR1_80_H10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_80_H10_A033 3', mRNA sequence
Length = 825
Score = 215 bits (463), Expect(2) = 1e-078
Identities = 84/110 (76%), Positives = 98/110 (89%)
Frame = +2 / +2
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y RSALDYLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIHDADFG
Sbjct: 386 ASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFG 565
Query: 404 WGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLIGE 553
WGRP+FMGPGGIAYEGLAFVLPS+ DGSLS+A+ LQ +HM +F K++ E
Sbjct: 566 WGRPIFMGPGGIAYEGLAFVLPSSVNDGSLSVALGLQPDHMVRFAKMLYE 715
Score = 102 bits (217), Expect(2) = 3e-033
Identities = 53/99 (53%), Positives = 58/99 (58%)
Frame = -2 / -1
Query: 519 SACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVSPRFGQR 340
S CN A D+LPS LG+T ARPS A+PPGPMN G PHPKSAS IG R QLV P FG
Sbjct: 681 SGCNPNATDKLPSLTELGKTKARPS*AIPPGPMNMGLPHPKSAS*IGNRDQLVIPIFGHL 502
Query: 339 KVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAA 223
KV AP S AER+ S SI A +T A
Sbjct: 501 KV*APLTRAVKSGCNSK*SKAERKYSSSIRPKAS*ITLA 385
Score = 99.6 bits (211), Expect(2) = 1e-078
Identities = 38/75 (50%), Positives = 52/75 (69%)
Frame = +2 / +2
Query: 11 FSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAE 190
+S+Y +L+ H+W+C AR+L +Q TKLY ATDGR L+P +P GYFGNVIFT TP+A
Sbjct: 170 YSSYEMLSGHIWRCACKARNLAEDQETKLYIATDGRNRLRPSIPPGYFGNVIFTTTPMAV 349
Query: 191 AGKVTSELAEGAAVI 235
G + S+ AA +
Sbjct: 350 TGDIISKPTYYAASV 394
Score = 60.2 bits (125), Expect(2) = 3e-033
Identities = 29/61 (47%), Positives = 34/61 (55%)
Frame = -2 / -1
Query: 195 PASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGRLRARETHFQTCAASTAYV 16
P +A GV V +T PK P G G S RPSVA YNLV S R A + H Q C S + +
Sbjct: 354 PVTAMGVVVNITFPK*PGGMDGLSRLRPSVAIYNLVS*SSARFLALQAHLQMCPESIS*L 175
Query: 15 L 13
L
Sbjct: 174 L 172
>gb|DR099947.1|DR099947 STRR1_60_F09.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_60_F09_A033 3', mRNA sequence
Length = 672
Score = 215 bits (463), Expect(2) = 1e-078
Identities = 84/110 (76%), Positives = 98/110 (89%)
Frame = +2 / -1
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y RSALDYLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIHDADFG
Sbjct: 408 ASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFG 229
Query: 404 WGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLIGE 553
WGRP+FMGPGGIAYEGLAFVLPS+ DGSLS+A+ LQ +HM +F K++ E
Sbjct: 228 WGRPIFMGPGGIAYEGLAFVLPSSVNDGSLSVALGLQPDHMVRFAKMLYE 79
Score = 102 bits (217), Expect(2) = 6e-034
Identities = 53/99 (53%), Positives = 58/99 (58%)
Frame = -2 / +2
Query: 519 SACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVSPRFGQR 340
S CN A D+LPS LG+T ARPS A+PPGPMN G PHPKSAS IG R QLV P FG
Sbjct: 113 SGCNPNATDKLPSLTELGKTKARPS*AIPPGPMNMGLPHPKSAS*IGNRDQLVIPIFGHL 292
Query: 339 KVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAA 223
KV AP S AER+ S SI A +T A
Sbjct: 293 KV*APLTRAVKSGCNSK*SKAERKYSSSIRPKAS*ITLA 409
Score = 99.6 bits (211), Expect(2) = 1e-078
Identities = 38/75 (50%), Positives = 52/75 (69%)
Frame = +2 / -1
Query: 11 FSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAE 190
+S+Y +L+ H+W+C AR+L +Q TKLY ATDGR L+P +P GYFGNVIFT TP+A
Sbjct: 624 YSSYEMLSGHIWRCACKARNLAEDQETKLYIATDGRNRLRPSIPPGYFGNVIFTTTPMAV 445
Query: 191 AGKVTSELAEGAAVI 235
G + S+ AA +
Sbjct: 444 TGDIISKPTYYAASV 400
Score = 62.5 bits (130), Expect(2) = 6e-034
Identities = 30/61 (49%), Positives = 35/61 (57%)
Frame = -2 / +2
Query: 195 PASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGRLRARETHFQTCAASTAYV 16
P +A GV VK+T PK P G G S RPSVA YNLV S R A + H Q C S + +
Sbjct: 440 PVTAMGVVVKITFPK*PGGMDGLSRLRPSVAIYNLVS*SSARFLALQAHLQMCPESIS*L 619
Query: 15 L 13
L
Sbjct: 620 L 622
>gb|BM493459.1|BM493459 NXLV_064_F10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_064_F10 5' similar to Arabidopsis thaliana
sequence At5g48930 anthranilate N-benzoyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 629
Score = 190 bits (409), Expect(2) = 3e-070
Identities = 76/104 (73%), Positives = 85/104 (81%)
Frame = +2 / +3
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y RSALDYLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIHDADFG
Sbjct: 225 ASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFG 404
Query: 404 WGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKF 535
WGRP+FMGPGGIAYEGLAFVLPS+ DGS I + F
Sbjct: 405 WGRPIFMGPGGIAYEGLAFVLPSSVNDGSXVSCIGIATRSYGSF 536
Score = 95.9 bits (203), Expect(2) = 3e-070
Identities = 37/72 (51%), Positives = 49/72 (68%)
Frame = +2 / +3
Query: 20 YAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAEAGK 199
Y +L+ H+W+C AR+L +Q TKLY ATDGR L+P +P GYFGNVIFT TP+A G
Sbjct: 18 YEMLSGHIWRCACKARNLAEDQETKLYIATDGRNRLRPSIPPGYFGNVIFTTTPMAVTGD 197
Query: 200 VTSELAEGAAVI 235
+ S+ AA +
Sbjct: 198 IISKPTYYAASV 233
Score = 90.4 bits (191), Expect(2) = 3e-031
Identities = 48/92 (52%), Positives = 53/92 (57%)
Frame = -2 / -2
Query: 498 MDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVSPRFGQRKVCAPXX 319
+ LPS LG+T ARPS A+PPGPMN G PHPKSAS IG R QLV P FG KV AP
Sbjct: 499 LTXLPSLTELGKTKARPS*AIPPGPMNMGLPHPKSAS*IGNRDQLVIPIFGHLKV*APLT 320
Query: 318 XXXXXXXXXXXSNAERQ*SLSILSSAPWMTAA 223
S AER+ S SI A +T A
Sbjct: 319 RAVKSGCNSK*SKAERKYSSSIRPKAS*ITLA 224
Score = 65.2 bits (136), Expect(2) = 3e-031
Identities = 30/59 (50%), Positives = 34/59 (57%)
Frame = -2 / -2
Query: 195 PASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGRLRARETHFQTCAASTAY 19
P +A GV VK+T PK P G G S RPSVA YNLV S R A + H Q C S +Y
Sbjct: 193 PVTAMGVVVKITFPK*PGGMDGLSRLRPSVAIYNLVS*SSARFLALQAHLQMCPESISY 17
>gb|DR177768.1|DR177768 RTMNUT1_7_F07.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_7_F07_A029 3', mRNA sequence
Length = 721
Score = 215 bits (463), Expect(2) = 1e-068
Identities = 84/110 (76%), Positives = 98/110 (89%)
Frame = +2 / +3
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y RSALDYLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIHDADFG
Sbjct: 345 ASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFG 524
Query: 404 WGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLIGE 553
WGRP+FMGPGGIAYEGLAFVLPS+ DGSLS+A+ LQ +HM +F K++ E
Sbjct: 525 WGRPIFMGPGGIAYEGLAFVLPSSVNDGSLSVALGLQPDHMVRFAKMLYE 674
Score = 102 bits (217), Expect(2) = 5e-027
Identities = 53/99 (53%), Positives = 58/99 (58%)
Frame = -2 / -1
Query: 519 SACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVSPRFGQR 340
S CN A D+LPS LG+T ARPS A+PPGPMN G PHPKSAS IG R QLV P FG
Sbjct: 640 SGCNPNATDKLPSLTELGKTKARPS*AIPPGPMNMGLPHPKSAS*IGNRDQLVIPIFGHL 461
Query: 339 KVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAA 223
KV AP S AER+ S SI A +T A
Sbjct: 460 KV*APLTRAVKSGCNSK*SKAERKYSSSIRPKAS*ITLA 344
Score = 65.7 bits (137), Expect(2) = 1e-068
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +2 / +2
Query: 11 FSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIF 169
+S+Y +L+ H+W+C AR+L +Q TKLY ATDGR L+P +P F F
Sbjct: 128 YSSYEMLSGHIWRCACKARNLAEDQETKLYIATDGRNRLRPSIPPWLFWECYF 286
Score = 39.1 bits (79), Expect(2) = 5e-027
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = -2 / -2
Query: 141 GSGGCSV*RPSVAQYNLVGCSGGRLRARETHFQTCAASTAYVL 13
G G S RPSVA YNLV S R A + H Q C S + +L
Sbjct: 258 GMDGLSRLRPSVAIYNLVS*SSARFLALQAHLQMCPESIS*LL 130
>gb|BF220601.1|BF220601 NXCI_149_C10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_149_C10 5' similar to Arabidopsis
thaliana sequence At5g48930 anthranilate
N-benzoyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 520
Score = 204 bits (439), Expect(2) = 5e-068
Identities = 81/110 (73%), Positives = 94/110 (85%)
Frame = +2 / +1
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y RSALDYLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIHDADFG
Sbjct: 163 ASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFG 342
Query: 404 WGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLIGE 553
WGRP+FMGPGGIAYE AFVLPS+ DGSLS+A+ LQ M +F K++ E
Sbjct: 343 WGRPIFMGPGGIAYEXXAFVLPSSVNDGSLSVALGLQPXXMVRFAKMLYE 492
Score = 95.5 bits (202), Expect(2) = 2e-028
Identities = 51/99 (51%), Positives = 56/99 (56%)
Frame = -2 / -3
Query: 519 SACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVSPRFGQR 340
S CN A D+LPS LG+T A S A+PPGPMN G PHPKSAS IG R QLV P FG
Sbjct: 458 SGCNPNATDKLPSLTELGKTKAXXS*AIPPGPMNMGLPHPKSAS*IGNRDQLVIPIFGHL 279
Query: 339 KVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAA 223
KV AP S AER+ S SI A +T A
Sbjct: 278 KV*APLTRAVKSGCNSK*SKAERKYSSSIRPKAS*ITLA 162
Score = 74.8 bits (157), Expect(2) = 5e-068
Identities = 31/57 (54%), Positives = 39/57 (68%)
Frame = +2 / +1
Query: 65 RSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAEAGKVTSELAEGAAVI 235
R+L +Q TKLY ATDGR L+P +P GYFGNVIFT TP+A G + S+ AA +
Sbjct: 1 RNLAEDQETKLYIATDGRNRLRPSIPPGYFGNVIFTTTPMAVTGDIISKPTYYAASV 171
Score = 50.6 bits (104), Expect(2) = 2e-028
Identities = 24/42 (57%), Positives = 26/42 (61%)
Frame = -2 / -3
Query: 195 PASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGR 70
P +A GV VK+T PK P G G S RPSVA YNLV S R
Sbjct: 131 PVTAMGVVVKITFPK*PGGMDGLSRLRPSVAIYNLVS*SSAR 6
>gb|DR057489.1|DR057489 RTNIT1_6_D02.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_6_D02_A029 3', mRNA sequence
Length = 837
Score = 215 bits (463), Expect(3) = 6e-068
Identities = 84/110 (76%), Positives = 98/110 (89%)
Frame = +2 / +1
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y RSALDYLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIHDADFG
Sbjct: 160 ASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFG 339
Query: 404 WGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLIGE 553
WGRP+FMGPGGIAYEGLAFVLPS+ DGSLS+A+ LQ +HM +F K++ E
Sbjct: 340 WGRPIFMGPGGIAYEGLAFVLPSSVNDGSLSVALGLQPDHMVRFAKMLYE 489
Score = 102 bits (217), Expect(2) = 2e-023
Identities = 53/99 (53%), Positives = 58/99 (58%)
Frame = -2 / -2
Query: 519 SACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVSPRFGQR 340
S CN A D+LPS LG+T ARPS A+PPGPMN G PHPKSAS IG R QLV P FG
Sbjct: 455 SGCNPNATDKLPSLTELGKTKARPS*AIPPGPMNMGLPHPKSAS*IGNRDQLVIPIFGHL 276
Query: 339 KVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAA 223
KV AP S AER+ S SI A +T A
Sbjct: 275 KV*APLTRAVKSGCNSK*SKAERKYSSSIRPKAS*ITLA 159
Score = 45.1 bits (92), Expect(3) = 6e-068
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2 / +1
Query: 134 PLPDGYFGNVIFTATPLAEAGKVTSELAEGAAVI 235
P P GYFGNVIFT TP+A G + S+ AA +
Sbjct: 67 PFPPGYFGNVIFTTTPMAVTGDIISKPTYYAASV 168
Score = 37.3 bits (75), Expect(3) = 6e-068
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2 / +3
Query: 71 LPPEQPTKLYCATDGRQTLQPPLPDGYF 154
L +Q TKLY ATDGR L+P +P F
Sbjct: 3 LAEDQETKLYIATDGRNRLRPSIPPWLF 86
Score = 27.2 bits (53), Expect(2) = 2e-023
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -2 / -3
Query: 141 GSGGCSV*RPSVAQYNLVGCSGGR 70
G G S RPSVA YNLV S R
Sbjct: 73 GMDGLSRLRPSVAIYNLVS*SSAR 2
>gb|BE758619.1|BE758619 NXCI_069_B10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_069_B10 5' similar to Arabidopsis
thaliana sequence At5g48930 anthranilate
N-benzoyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 203 bits (437), Expect(2) = 2e-067
Identities = 80/107 (74%), Positives = 93/107 (86%)
Frame = +2 / +1
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y RSALDYLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIHDADFG
Sbjct: 163 ASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFG 342
Query: 404 WGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKL 544
WGRP+FMGPG IAYEGLAFVL S+ DGSLS+A+ L +HM +F K+
Sbjct: 343 WGRPIFMGPGXIAYEGLAFVLXSSVNDGSLSVALGLXPDHMVRFXKM 483
Score = 90.0 bits (190), Expect(2) = 1e-026
Identities = 50/99 (50%), Positives = 55/99 (55%)
Frame = -2 / -3
Query: 519 SACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVSPRFGQR 340
S N A D+LPS L +T ARPS A+ PGPMN G PHPKSAS IG R QLV P FG
Sbjct: 458 SGXNPNATDKLPSLTELXKTKARPS*AIXPGPMNMGLPHPKSAS*IGNRDQLVIPIFGHL 279
Query: 339 KVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAA 223
KV AP S AER+ S SI A +T A
Sbjct: 278 KV*APLTRAVKSGCNSK*SKAERKYSSSIRPKAS*ITLA 162
Score = 73.9 bits (155), Expect(2) = 2e-067
Identities = 31/57 (54%), Positives = 38/57 (66%)
Frame = +2 / +1
Query: 65 RSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAEAGKVTSELAEGAAVI 235
R+L +Q TKLY ATDGR L P +P GYFGNVIFT TP+A G + S+ AA +
Sbjct: 1 RNLAEDQETKLYIATDGRNRLXPSIPPGYFGNVIFTTTPMAVTGDIISKPTYYAASV 171
Score = 50.6 bits (104), Expect(2) = 1e-026
Identities = 24/42 (57%), Positives = 26/42 (61%)
Frame = -2 / -3
Query: 195 PASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGR 70
P +A GV VK+T PK P G G S RPSVA YNLV S R
Sbjct: 131 PVTAMGVVVKITFPK*PGGMDGLSRLRPSVAIYNLVS*SSAR 6
>gb|CF474611.1|CF474611 RTWW2_9_E10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_E10_A021 5', mRNA sequence
Length = 644
Score = 150 bits (322), Expect(2) = 2e-059
Identities = 57/69 (82%), Positives = 64/69 (92%)
Frame = +2 / +3
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y RSALDYLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIHDADFG
Sbjct: 438 ASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFG 617
Query: 404 WGRPVFMGP 430
WGRP+FMGP
Sbjct: 618 WGRPIFMGP 644
Score = 99.6 bits (211), Expect(2) = 2e-059
Identities = 38/75 (50%), Positives = 52/75 (69%)
Frame = +2 / +3
Query: 11 FSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAE 190
+S+Y +L+ H+W+C AR+L +Q TKLY ATDGR L+P +P GYFGNVIFT TP+A
Sbjct: 222 YSSYEMLSGHIWRCACKARNLAEDQETKLYIATDGRNRLRPSIPPGYFGNVIFTTTPMAV 401
Query: 191 AGKVTSELAEGAAVI 235
G + S+ AA +
Sbjct: 402 TGDIISKPTYYAASV 446
Score = 67.5 bits (141), Expect(2) = 1e-023
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = -2 / -2
Query: 195 PASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGRLRARETHFQTCAASTAYV 16
P +A GV VK+T PKYP G G S RPSVA YNLV S R A + H Q C S + +
Sbjct: 406 PVTAMGVVVKITFPKYPGGMDGLSRLRPSVAIYNLVS*SSARFLALQAHLQMCPESIS*L 227
Query: 15 L 13
L
Sbjct: 226 L 224
Score = 62.5 bits (130), Expect(2) = 1e-023
Identities = 35/69 (50%), Positives = 37/69 (53%)
Frame = -2 / -2
Query: 429 GPMNTGRPHPKSASWIGRRTQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSIL 250
GPMN G PHPKSAS IG R QLV P FG KV AP S AER+ S SI
Sbjct: 643 GPMNMGLPHPKSAS*IGNRDQLVIPIFGHLKV*APLTRAVKSGCNSK*SKAERKYSSSIR 464
Query: 249 SSAPWMTAA 223
A +T A
Sbjct: 463 PKAS*ITLA 437
>gb|DR057577.1|DR057577 RTNIT1_6_D02.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_6_D02_A029 5', mRNA sequence
Length = 624
Score = 150 bits (322), Expect(2) = 2e-059
Identities = 57/69 (82%), Positives = 64/69 (92%)
Frame = +2 / +3
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y RSALDYLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIHDADFG
Sbjct: 417 ASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFG 596
Query: 404 WGRPVFMGP 430
WGRP+FMGP
Sbjct: 597 WGRPIFMGP 623
Score = 99.6 bits (211), Expect(2) = 2e-059
Identities = 38/75 (50%), Positives = 52/75 (69%)
Frame = +2 / +3
Query: 11 FSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAE 190
+S+Y +L+ H+W+C AR+L +Q TKLY ATDGR L+P +P GYFGNVIFT TP+A
Sbjct: 201 YSSYEMLSGHIWRCACKARNLAEDQETKLYIATDGRNRLRPSIPPGYFGNVIFTTTPMAV 380
Query: 191 AGKVTSELAEGAAVI 235
G + S+ AA +
Sbjct: 381 TGDIISKPTYYAASV 425
Score = 62.5 bits (130), Expect(2) = 2e-021
Identities = 35/69 (50%), Positives = 37/69 (53%)
Frame = -2 / -3
Query: 429 GPMNTGRPHPKSASWIGRRTQLVSPRFGQRKVCAPXXXXXXXXXXXXXSNAERQ*SLSIL 250
GPMN G PHPKSAS IG R QLV P FG KV AP S AER+ S SI
Sbjct: 622 GPMNMGLPHPKSAS*IGNRDQLVIPIFGHLKV*APLTRAVKSGCNSK*SKAERKYSSSIR 443
Query: 249 SSAPWMTAA 223
A +T A
Sbjct: 442 PKAS*ITLA 416
Score = 60.2 bits (125), Expect(2) = 2e-021
Identities = 29/61 (47%), Positives = 34/61 (55%)
Frame = -2 / -3
Query: 195 PASASGVAVKMTLPKYPSGSGGCSV*RPSVAQYNLVGCSGGRLRARETHFQTCAASTAYV 16
P +A GV V +T PK P G G S RPSVA YNLV S R A + H Q C S + +
Sbjct: 385 PVTAMGVVVNITFPK*PGGMDGLSRLRPSVAIYNLVS*SSARFLALQAHLQMCPESIS*L 206
Query: 15 L 13
L
Sbjct: 205 L 203
>gb|DR099998.1|DR099998 STRR1_60_F09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_60_F09_A033 5', mRNA sequence
Length = 455
Score = 210 bits (452), Expect(2) = 2e-057
Identities = 82/110 (74%), Positives = 96/110 (87%)
Frame = +2 / -2
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y SALDYLELQPDL+ALVRGAHTFRCPN+G+ SW RLPIHDADFG
Sbjct: 379 ASVIHEALGRMDDEYLGSALDYLELQPDLTALVRGAHTFRCPNIGIASWFRLPIHDADFG 200
Query: 404 WGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLIGE 553
WGRP+FMGPGGIAYEGLAFVLPS+ DGSLS+A+ LQ +HM +F K++ E
Sbjct: 199 WGRPIFMGPGGIAYEGLAFVLPSSVNDGSLSVALGLQPDHMVRFAKMLYE 50
Score = 33.1 bits (66), Expect(2) = 2e-057
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2 / -2
Query: 152 FGNVIFTATPLAEAGKVTSELAEGAAVI 235
FGNVIFT TP+A G + S+ AA +
Sbjct: 454 FGNVIFTTTPMAVTGDIISKPTYYAASV 371
>gb|BM133887.1|BM133887 NXLV_013_F09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_013_F09 5' similar to Arabidopsis thaliana
sequence At5g48930 anthranilate N-benzoyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 442
Score = 204 bits (439), Expect = 1e-051
Identities = 81/110 (73%), Positives = 94/110 (85%)
Frame = +2 / +3
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFG 403
A+VI AL RMD++Y RSA YLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIHDADFG
Sbjct: 42 ASVIHEALGRMDDEYLRSAXXYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFG 221
Query: 404 WGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLIGE 553
WGRP+FMGPGGIAYEGLAFVLPS+ DGSLS+A+ LQ M +F K++ E
Sbjct: 222 WGRPIFMGPGGIAYEGLAFVLPSSVNDGSLSVALGLQPXXMVRFAKMLYE 371
Score = 101 bits (216), Expect = 6e-021
Identities = 52/99 (52%), Positives = 57/99 (57%)
Frame = -2 / -1
Query: 519 SACNEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVSPRFGQR 340
S CN A D+LPS LG+T ARPS A+PPGPMN G PHPKSAS IG R QLV P FG
Sbjct: 337 SGCNPNATDKLPSLTELGKTKARPS*AIPPGPMNMGLPHPKSAS*IGNRDQLVIPIFGHL 158
Query: 339 KVCAPXXXXXXXXXXXXXSNAERQ*SLSILSSAPWMTAA 223
KV AP AER+ S SI A +T A
Sbjct: 157 KV*APLTRAVKSGCNSK*XKAERKYSSSIRPKAS*ITLA 41
>gb|BQ654555.1|BQ654555 NXRV082_B12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV082_B12 5' similar to Arabidopsis thaliana
sequence At5g48930 anthranilate N-benzoyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 441
Score = 111 bits (238), Expect(2) = 7e-048
Identities = 44/55 (80%), Positives = 50/55 (90%)
Frame = +2 / +1
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIH 388
A+VI AL RMD++Y RSALDYLELQPDL+ALVRGAHTFRCPN+G+TSW RLPIH
Sbjct: 232 ASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIH 396
Score = 99.6 bits (211), Expect(2) = 7e-048
Identities = 38/75 (50%), Positives = 52/75 (69%)
Frame = +2 / +1
Query: 11 FSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAE 190
+S+Y +L+ H+W+C AR+L +Q TKLY ATDGR L+P +P GYFGNVIFT TP+A
Sbjct: 16 YSSYEMLSGHIWRCACKARNLAEDQETKLYIATDGRNRLRPSIPPGYFGNVIFTTTPMAV 195
Query: 191 AGKVTSELAEGAAVI 235
G + S+ AA +
Sbjct: 196 TGDIISKPTYYAASV 240
>gb|BG318662.1|BG318662 NXPV_017_E08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_017_E08 5' similar to Arabidopsis
thaliana sequence At5g48930 anthranilate
N-benzoyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 484
Score = 99.6 bits (211), Expect(2) = 4e-032
Identities = 38/75 (50%), Positives = 52/75 (69%)
Frame = +2 / +2
Query: 11 FSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAE 190
+S+Y +L+ H+W+C AR+L +Q TKLY ATDGR L+P +P GYFGNVIFT TP+A
Sbjct: 128 YSSYEMLSGHIWRCACKARNLAEDQETKLYIATDGRNRLRPSIPPGYFGNVIFTTTPMAV 307
Query: 191 AGKVTSELAEGAAVI 235
G + S+ AA +
Sbjct: 308 TGDIISKPTYYAASV 352
Score = 59.3 bits (123), Expect(2) = 4e-032
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +2 / +2
Query: 224 AAVIQGALDRMDNDYCRSALDYLELQPDLSALVRGAHTFRCPNLGLT 364
A+VI AL MD++Y RSA DYL LQPDL+A V HT N+G+T
Sbjct: 344 ASVIHEALGWMDDEYLRSAXDYLXLQPDLTAXVXXXHTXXXXNIGIT 484
>gb|CF474499.1|CF474499 RTWW2_9_E10.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_E10_A021 3', mRNA sequence
Length = 369
Score = 107 bits (228), Expect = 1e-022
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +2 / +1
Query: 383 IHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKFRKLIGE 553
IHDADFGWGRP+FMG GGIAYEGLAFVLPS+ DGSLS+A+ LQ +HM +F K++ E
Sbjct: 1 IHDADFGWGRPIFMGRGGIAYEGLAFVLPSSVNDGSLSVALGLQPDHMVRFAKMLYE 171
>gb|BX254084.1|BX254084 BX254084 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093B02, mRNA sequence
Length = 523
Score = 74.8 bits (157), Expect(3) = 3e-022
Identities = 31/65 (47%), Positives = 40/65 (61%)
Frame = +2 / -3
Query: 8 RFSTYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLA 187
R ST+ L+A VWKC S A ++ P Q KL A DGR +PPLP GYFGN I + +
Sbjct: 416 RCSTFEALSALVWKCRSNALNMAPNQEAKLLFAVDGRAKFEPPLPKGYFGNGIVLTSAIG 237
Query: 188 EAGKV 202
AG++
Sbjct: 236 RAGEL 222
Score = 39.6 bits (80), Expect(3) = 3e-022
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / -3
Query: 359 LTSWVRLPIHDADFGWGRPV 418
LT+W RL H DFGWG PV
Sbjct: 86 LTTWSRLSFHTTDFGWGEPV 27
Score = 28.6 bits (56), Expect(3) = 3e-022
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2 / -3
Query: 212 LAEGAAVIQGALDRMDNDYCRSALDYLEL 298
L+ G +IQ A+ + + + RSA+DY E+
Sbjct: 209 LSFGVGLIQKAIGMITDKFMRSAIDYFEV 123
>gb|DR053727.1|DR053727 RTCA1_13_A01.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_13_A01_A029 3', mRNA sequence
Length = 860
Score = 66.1 bits (138), Expect(3) = 1e-021
Identities = 28/63 (44%), Positives = 37/63 (58%)
Frame = +2 / -2
Query: 14 STYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAEA 193
ST+ L+A VWK A ++ P Q KL A DGR +PPLP GYFGN I + + A
Sbjct: 637 STFEALSALVWKYRCNALNMAPNQEAKLLFAVDGRAKFEPPLPKGYFGNGIVLTSAIGRA 458
Query: 194 GKV 202
G++
Sbjct: 457 GEL 449
Score = 46.4 bits (95), Expect(3) = 1e-021
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2 / -2
Query: 359 LTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKF 535
LT+W RL H DFGWG PV P + + L S++I + L M++F
Sbjct: 313 LTTWSRLSFHTTDFGWGEPVQSVPVTLPAREVVLFLSHGQQRKSINILLGLPESAMDRF 137
Score = 28.6 bits (56), Expect(3) = 1e-021
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2 / -2
Query: 212 LAEGAAVIQGALDRMDNDYCRSALDYLEL 298
L+ G +IQ A+ + + + RSA+DY E+
Sbjct: 436 LSFGVGLIQKAIGMITDKFMRSAIDYFEV 350
>gb|DN463637.1|DN463637 EST959436 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJ135 5' end, mRNA sequence
Length = 854
Score = 66.1 bits (138), Expect(3) = 1e-021
Identities = 28/63 (44%), Positives = 37/63 (58%)
Frame = +2 / +1
Query: 14 STYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAEA 193
ST+ L+A VWK A ++ P Q KL A DGR +PPLP GYFGN I + + A
Sbjct: 244 STFEALSALVWKYRCNALNMAPNQEAKLLFAVDGRAKFEPPLPKGYFGNGIVLTSAIGRA 423
Query: 194 GKV 202
G++
Sbjct: 424 GEL 432
Score = 46.4 bits (95), Expect(3) = 1e-021
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2 / +1
Query: 359 LTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKF 535
LT+W RL H DFGWG PV P + + L S++I + L M++F
Sbjct: 568 LTTWSRLSFHTTDFGWGEPVQSVPVTLPAREVVLFLSHGQQRKSINILLGLPESAMDRF 744
Score = 28.6 bits (56), Expect(3) = 1e-021
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 212 LAEGAAVIQGALDRMDNDYCRSALDYLEL 298
L+ G +IQ A+ + + + RSA+DY E+
Sbjct: 445 LSFGVGLIQKAIGMITDKFMRSAIDYFEV 531
>gb|CO364284.1|CO364284 RTK1_14_G03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_G03_A029 5', mRNA sequence
Length = 731
Score = 66.1 bits (138), Expect(3) = 1e-021
Identities = 28/63 (44%), Positives = 37/63 (58%)
Frame = +2 / +2
Query: 14 STYAVLAAHVWKCVSLARSLPPEQPTKLYCATDGRQTLQPPLPDGYFGNVIFTATPLAEA 193
ST+ L+A VWK A ++ P Q KL A DGR +PPLP GYFGN I + + A
Sbjct: 119 STFEALSALVWKYRCNALNMAPNQEAKLLFAVDGRAKFEPPLPKGYFGNGIVLTSAIGRA 298
Query: 194 GKV 202
G++
Sbjct: 299 GEL 307
Score = 46.4 bits (95), Expect(3) = 1e-021
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2 / +2
Query: 359 LTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANGDGSLSIAISLQAEHMEKF 535
LT+W RL H DFGWG PV P + + L S++I + L M++F
Sbjct: 443 LTTWSRLSFHTTDFGWGEPVQSVPVTLPAREVVLFLSHGQQRKSINILLGLPESAMDRF 619
Score = 28.6 bits (56), Expect(3) = 1e-021
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 212 LAEGAAVIQGALDRMDNDYCRSALDYLEL 298
L+ G +IQ A+ + + + RSA+DY E+
Sbjct: 320 LSFGVGLIQKAIGMITDKFMRSAIDYFEV 406
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 523,880,291
Number of Sequences: 355925
Number of extensions: 8127007
Number of successful extensions: 53322
Number of sequences better than 1.0e-020: 23
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 12908374520
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)