TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594433.2.1
(766 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR012558.1|DR012558 HEAT1_13_D05.g1_A029 Root at 37 C fo... 163 1e-039
>gb|DR012558.1|DR012558 HEAT1_13_D05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_D05_A029 5', mRNA sequence
Length = 691
Score = 163 bits (351), Expect = 1e-039
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = -1 / +3
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWYRACKTCN+KVTE GSGYWCEGCQK+++ECSLRYIMVVK SD +GEAW+SV
Sbjct: 393 IKPDQPMWYRACKTCNRKVTEEIGSGYWCEGCQKHETECSLRYIMVVKASDSSGEAWLSV 572
Query: 556 FNEHAEKIIGCSADELDRIRKEEGD 482
FN+ AE+I+ +ADEL IR E+ D
Sbjct: 573 FNDQAEQILRHTADELAAIRSEDAD 647
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 414,079,505
Number of Sequences: 355925
Number of extensions: 5959038
Number of successful extensions: 44094
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10891364290
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)