TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594342.2.1
(715 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM157544.1|BM157544 NXLV_020_H06_F NXLV (Nsf Xylem Late ... 130 1e-029
gb|BQ198189.1|BQ198189 NXLV126_G08_F NXLV (Nsf Xylem Late w... 130 1e-029
gb|CF396890.1|CF396890 RTDS2_25_C10.b1_A021 Drought-stresse... 130 1e-029
gb|AW784077.1|AW784077 NXNV_117_E04_F Nsf Xylem Normal wood... 129 2e-029
gb|DR048917.1|DR048917 RTBOR1_12_C08.b1_A029 Roots plus add... 124 5e-028
gb|BX253418.1|BX253418 BX253418 Pinus pinaster differenciat... 123 1e-027
gb|DR095574.1|DR095574 STRR1_22_D02.b1_A033 Stem Response R... 123 1e-027
gb|BX249272.1|BX249272 BX249272 Pinus pinaster differenciat... 121 5e-027
gb|CF477697.1|CF477697 RTWW3_9_A09.g1_A022 Well-watered lob... 116 1e-025
gb|CF663950.1|CF663950 RTCNT1_6_E12.b1_A029 Root control Pi... 113 2e-024
>gb|BM157544.1|BM157544 NXLV_020_H06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_020_H06 5' similar to Arabidopsis thaliana
sequence At5g64570 beta-xylosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 554
Score = 130 bits (278), Expect = 1e-029
Identities = 51/98 (52%), Positives = 68/98 (69%)
Frame = -2 / +3
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+GL F++ + V N G R GG V LF SPP + +P K L+ F KV + G V F
Sbjct: 147 CQGLLFDIHMDVHNTGNRDGGHAVLLFFSPPTIHRSPQKSLMDFRKVHVGAGATERVQFS 326
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV 409
+DVCKDLS+VDE+G +K+ALGSH LHVGD++H+LNL +
Sbjct: 327 IDVCKDLSIVDEIGVKKLALGSHILHVGDVQHSLNLQI 440
>gb|BQ198189.1|BQ198189 NXLV126_G08_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV126_G08 5' similar to Arabidopsis thaliana
sequence At5g64570 beta-xylosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 605
Score = 130 bits (278), Expect = 1e-029
Identities = 51/98 (52%), Positives = 68/98 (69%)
Frame = -2 / +1
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+GL F++ + V N G R GG V LF SPP + +P K L+ F KV + G V F
Sbjct: 154 CQGLLFDIHMDVHNTGNRDGGHAVLLFFSPPTIHRSPQKSLMDFRKVHVGAGATERVQFS 333
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV 409
+DVCKDLS+VDE+G +K+ALGSH LHVGD++H+LNL +
Sbjct: 334 IDVCKDLSIVDEIGVKKLALGSHILHVGDVQHSLNLQI 447
>gb|CF396890.1|CF396890 RTDS2_25_C10.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_25_C10_A021 3', mRNA sequence
Length = 664
Score = 130 bits (278), Expect = 1e-029
Identities = 51/98 (52%), Positives = 68/98 (69%)
Frame = -2 / +2
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+GL F++ + V N G R GG V LF SPP + +P K L+ F KV + G V F
Sbjct: 107 CQGLLFDIHMDVHNTGNRDGGHAVLLFFSPPTIHRSPQKSLMDFRKVHVGAGATERVQFS 286
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV 409
+DVCKDLS+VDE+G +K+ALGSH LHVGD++H+LNL +
Sbjct: 287 IDVCKDLSIVDEIGVKKLALGSHILHVGDVQHSLNLQI 400
>gb|AW784077.1|AW784077 NXNV_117_E04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_117_E04 5' similar to Arabidopsis thaliana
sequence At5g64570 beta-xylosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 129 bits (276), Expect = 2e-029
Identities = 51/98 (52%), Positives = 68/98 (69%)
Frame = -2 / +3
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+GL F++ + V N G R GG V LF SPP + +P K L+ F KV + G V F
Sbjct: 12 CQGLLFDIHMDVHNTGNRDGGHAVLLFFSPPTIHRSPQKSLMDFRKVHVGAGATERVQFG 191
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV 409
+DVCKDLS+VDE+G +K+ALGSH LHVGD++H+LNL +
Sbjct: 192 IDVCKDLSIVDEIGVKKLALGSHILHVGDVQHSLNLQI 305
>gb|DR048917.1|DR048917 RTBOR1_12_C08.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_12_C08_A029 3', mRNA sequence
Length = 764
Score = 124 bits (266), Expect = 5e-028
Identities = 49/98 (50%), Positives = 69/98 (70%)
Frame = -2 / +1
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L V + V N GRR GG +FLFSSPP+ +AP K LLGF K+ L+ G V F
Sbjct: 124 CQNLFLEVHVEVSNVGRREGGHVLFLFSSPPSKHHAPKKQLLGFRKLHLQAGAMEKVHFT 303
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV 409
++VCKDLS+VD+ G RK+ +GSH LH+GD++H+++L +
Sbjct: 304 LNVCKDLSIVDKTGTRKLPVGSHLLHIGDIQHSVSLQI 417
>gb|BX253418.1|BX253418 BX253418 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083C07, mRNA sequence
Length = 690
Score = 123 bits (264), Expect = 1e-027
Identities = 49/98 (50%), Positives = 68/98 (69%)
Frame = -2 / +2
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ V + V N GRR GG +FLFSSPP+ +AP K LLGF K+ L+ G V F
Sbjct: 125 CQNFFLEVHVEVSNVGRREGGHVLFLFSSPPSKHHAPKKQLLGFRKLHLQAGAMEKVHFT 304
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV 409
++VCKDLS+VD+ G RK+ +GSH LH+GDL+H+++L +
Sbjct: 305 LNVCKDLSIVDKTGTRKLPVGSHLLHIGDLQHSVSLQI 418
>gb|DR095574.1|DR095574 STRR1_22_D02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_22_D02_A033 3', mRNA sequence
Length = 797
Score = 123 bits (264), Expect = 1e-027
Identities = 49/98 (50%), Positives = 69/98 (70%)
Frame = -2 / -3
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L V + V N GRR GG +FLFSSPP+ +AP K LLGF K+ L+ G V F
Sbjct: 663 CQNLFLEVHVEVSNVGRREGGHVLFLFSSPPSKHHAPKKLLLGFRKLHLQAGAMEKVHFT 484
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV 409
++VCKDLS+VD+ G RK+ +GSH LH+GD++H+++L +
Sbjct: 483 LNVCKDLSIVDKTGTRKLPVGSHLLHIGDIQHSVSLQI 370
>gb|BX249272.1|BX249272 BX249272 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP022A12, mRNA sequence
Length = 528
Score = 121 bits (259), Expect = 5e-027
Identities = 51/92 (55%), Positives = 64/92 (69%)
Frame = -2 / +2
Query: 684 NVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFKVDVCKD 505
+V L V+N G R GG V LFSSPPAV AP K ++GF KV + G V F +DVCKD
Sbjct: 5 DVHLDVQNTGSRDGGHAVLLFSSPPAVHGAPQKNMVGFRKVHVGAGATERVHFSIDVCKD 184
Query: 504 LSVVDELGNRKVALGSHTLHVGDLKHTLNLGV 409
LS+ DE G +K+ LGSH LHVGD++H+LNL +
Sbjct: 185 LSIADESGAKKLPLGSHLLHVGDVQHSLNLQI 280
>gb|CF477697.1|CF477697 RTWW3_9_A09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_A09_A022 5', mRNA sequence
Length = 736
Score = 116 bits (249), Expect = 1e-025
Identities = 47/98 (47%), Positives = 63/98 (64%)
Frame = -2 / +3
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+GL F++ V N G R G + LF+SPPA+ P K L+GF KV + G V F
Sbjct: 393 CQGLLFDLHAEVHNTGSRDGDHVLLLFASPPAIQGTPQKRLMGFRKVHVGAGGTERVHFS 572
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV 409
+DVCKD+S+VD G +++ LGSH LHVGD KHTL + +
Sbjct: 573 IDVCKDMSIVDGNGVKQLLLGSHLLHVGDTKHTLRVEI 686
>gb|CF663950.1|CF663950 RTCNT1_6_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_E12_A029 3', mRNA sequence
Length = 777
Score = 113 bits (241), Expect = 2e-024
Identities = 47/85 (55%), Positives = 58/85 (68%)
Frame = -2 / +3
Query: 663 NAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFKVDVCKDLSVVDEL 484
N G GG V LFSSPPAV AP K ++GF KV + G V F +DVCKDLS+ DE
Sbjct: 3 NTGSIDGGHAVLLFSSPPAVHGAPQKNMVGFRKVHVGAGTTERVHFSIDVCKDLSIADES 182
Query: 483 GNRKVALGSHTLHVGDLKHTLNLGV 409
G +K+ LGSH LHVGD++H+LNL +
Sbjct: 183 GAKKLLLGSHLLHVGDVQHSLNLQI 257
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 357,941,624
Number of Sequences: 355925
Number of extensions: 5455030
Number of successful extensions: 90396
Number of sequences better than 1.0e-020: 15
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9974764325
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)