TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594130.2.1
(2756 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stresse... 242 e-127
gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus adde... 190 1e-094
gb|DR088818.1|DR088818 RTAL1_4_F06.g1_A029 Roots plus added... 179 4e-086
dbj|BD236173.1| Materials and method for modification of pl... 295 9e-079
dbj|BD236171.1| Materials and method for modification of pl... 271 2e-071
dbj|BD236170.1| Materials and method for modification of pl... 196 4e-050
dbj|BD236172.1| Materials and method for modification of pl... 112 4e-048
dbj|BD236175.1| Materials and method for modification of pl... 185 1e-045
dbj|BD236176.1| Materials and method for modification of pl... 185 2e-045
gb|DR088754.1|DR088754 RTAL1_4_F06.b1_A029 Roots plus added... 148 2e-034
gb|CO364026.1|CO364026 RTK1_13_F04.b1_A029 Roots minus pota... 129 8e-029
gb|CO364190.1|CO364190 RTK1_14_F04.b1_A029 Roots minus pota... 127 5e-028
gb|DR019864.1|DR019864 STRS1_33_A09.b1_A034 Shoot tip pitch... 127 5e-028
gb|DR059847.1|DR059847 RTNIT1_20_D09.b1_A029 Roots minus ni... 120 4e-026
>gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_D06_A021 5', mRNA sequence
Length = 633
Score = 242 bits (522), Expect(2) = e-127
Identities = 94/111 (84%), Positives = 101/111 (90%)
Frame = +2 / +3
Query: 1328 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVTFTGNYGEYFGFATDVDAVVYLMLVNDLIR 1507
ARWWLEEYKFDGFRFDGVTSMMYTHHGLQV FTGNY EYFGFATDVDAVVYLMLVND+I
Sbjct: 3 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYAEYFGFATDVDAVVYLMLVNDMIH 182
Query: 1508 GLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLHMAVPDKWIELLKQSDE 1660
GL+P+A++IGEDVSGMPTF VQDGGVGFDYRLHMAV DKWIELL + +
Sbjct: 183 GLFPQAITIGEDVSGMPTFSRSVQDGGVGFDYRLHMAVADKWIELLSKKKD 335
Score = 236 bits (509), Expect(2) = e-127
Identities = 92/105 (87%), Positives = 97/105 (92%)
Frame = +2 / +3
Query: 1640 LLKQSDEYWEMGDIVHTLTNRRWLEKCVTYCESHDQALVGDKTIAFWLMDKDMYDFMALD 1819
L K+ DE W+MGDIV TL+NRRW EKCV Y ESHDQALVGDKTIAFWLMDKDMYDFMALD
Sbjct: 318 LSKKKDEDWQMGDIVFTLSNRRWSEKCVVYAESHDQALVGDKTIAFWLMDKDMYDFMALD 497
Query: 1820 RPSTPRIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDF 1954
+P+TP IDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDF
Sbjct: 498 QPATPAIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDF 632
Score = 170 bits (366), Expect(2) = 4e-083
Identities = 80/106 (75%), Positives = 85/106 (80%)
Frame = -3 / -3
Query: 1953 KSIHSGCPNSFPMKFR*PSPPKPIVTSLIILCNAIPRSMRGVEGLSRAMKSYISLSINQN 1774
KSIHSGCPNSFPMKFR PSPPKPIVTS IIL AIPRSM GV G S A+KSYISLS++Q
Sbjct: 631 KSIHSGCPNSFPMKFRYPSPPKPIVTSRIIL*RAIPRSMAGVAG*SSAIKSYISLSMSQK 452
Query: 1773 AIVLSPTRA*S*LSQ*VTHFSSHLLFVKVCTMSPISQYSSLCFRSS 1636
AIVLSPTRA*S*LS THFS HLLF V T+SPI Q SS F S+
Sbjct: 451 AIVLSPTRA*S*LSAYTTHFSDHLLFDSVNTISPICQSSSFFFESN 314
Score = 160 bits (344), Expect(2) = 4e-083
Identities = 75/105 (71%), Positives = 82/105 (78%)
Frame = -3 / -3
Query: 1641 SSIHLSGTAI*RR*SKPTPPSWTGIQNVGIPLTSSPMDTASG*SPRIRSFTSIR*TTAST 1462
+SIHLS TAI R*S PTPPS T + VGIPLTSSP+ A G P I S TSI+*TTAST
Sbjct: 316 NSIHLSATAIWSR*SNPTPPSCTEREKVGIPLTSSPIVMAWGNRP*IMSLTSIK*TTAST 137
Query: 1461 SVANPKYSP*FPVNVTCNPW*VYIMEVTPSNRNPSNLYSSSHHLA 1327
SVANPKYS *FPVN TCNP VYI++VTPSN NPSNLYSS+H A
Sbjct: 136 SVANPKYSA*FPVNATCNP*WVYIIDVTPSNLNPSNLYSSNHQRA 2
Score = 126 bits (269), Expect(2) = 3e-051
Identities = 57/105 (54%), Positives = 73/105 (69%)
Frame = -2 / -2
Query: 1954 KIYPFRMPKLISHEI*IAFTS*THCDKPNHFM*CYPTIDARR*RPVQSHEIIHILIHQPE 1775
KI PF + K ISHEI*I FT+*THCDK +H + Y TI R ++ H+IIHIL+H+P+
Sbjct: 632 KINPFWVSKFISHEI*IPFTT*THCDKSDHLVKSYSTIYGWSRRLIKCHKIIHILVHEPK 453
Query: 1774 CNCLVTNKSLIMTFTISDTLFKPPSIC*GVHDVTHFPIFVTLLQK 1640
CL+T+KSLIMT I T +PPSI * +++TH PI V LL K
Sbjct: 452 GYCLITDKSLIMTLCIYYTFLRPPSI**CKYNITHLPILVLLL*K 318
Score = 110 bits (235), Expect(2) = 2e-047
Identities = 49/104 (47%), Positives = 64/104 (61%)
Frame = +1 / +2
Query: 1327 CEMVA*RI*I*WVSI*WGDLHDVYSPWITSDIHWELWRVFWICH*C*CSSLPNAGKRSYS 1506
C +V +*I*WV +*W +++DV+ WIT IHWEL V WIC+*C C L +AG S
Sbjct: 2 CPLVVGGV*I*WV*V*WCNIYDVHPSWITGSIHWELC*VLWICY*CRCCGLFDAG**HDS 181
Query: 1507 WALSRSCIHWRRCQRNAYILYPCPRWWCWF*LSSSYGCPRQMD* 1638
W++S +WRRC+ A + C RW *LS+ YG QMD*
Sbjct: 182 WSISPGHNNWRRCEWYANLFSFCTRWRSGI*LSTPYGSS*QMD* 313
Score = 101 bits (215), Expect(2) = 2e-047
Identities = 47/92 (51%), Positives = 63/92 (68%)
Frame = +1 / +2
Query: 1657 RILGNG*HRAHLNK*KVA*KVCHLL*KXXXXXCW*QDNCILVDG*GYV*FHGSGQAFNAS 1836
R L NG*+ + K*KV *++C + + C * DN +L G GYV*F+G+ A ++S
Sbjct: 335 RGLANG*YCIYTIK*KVV*EMCSICRES*SGSCR**DNSLLAHGQGYV*FYGT*SACDSS 514
Query: 1837 HRSWDSIT*ND*ACHNGFRR*RLSKFHGK*VW 1932
HRSW+S + +D CHNGFR *R+SKFHGK*+W
Sbjct: 515 HRSWNSSSQDDPTCHNGFRW*RVSKFHGK*IW 610
Score = 101 bits (215), Expect(2) = 4e-039
Identities = 52/100 (52%), Positives = 59/100 (59%)
Frame = -1 / -1
Query: 1955 ENLSIQDAQTHFP*NLDSLHLLNPL*QA*SFYVMLSHDRCEALKACPEP*NHTYPYPSTR 1776
EN SI Q HFP*NLD+LH LNPL*Q S L HD +A P*NHTYP P +
Sbjct: 633 ENQSILGVQIHFP*NLDTLHHLNPL*QVGSSCEELFHDLWLESQADQVP*NHTYPCP*AK 454
Query: 1775 MQLSCHQQELDHDFHNK*HTFQATFYLLRCARCHPFPNIR 1656
LS H+QE DHD + H Q TFYL+ + HPF N R
Sbjct: 453 RLLSYHRQEPDHDSLHILHISQTTFYLIV*IQYHPFANPR 334
Score = 98.7 bits (209), Expect(2) = 3e-051
Identities = 42/92 (45%), Positives = 63/92 (68%)
Frame = -2 / -2
Query: 1663 IFVTLLQKFNPFVWDSHMKTIIKTNTTILDRDTKCRHSADIFANGYSFWIKPTNKIVYQH 1484
+ + L ++FNPFV HM++IIK+++ IL R K H+ IF+N Y N ++ QH
Sbjct: 338 LVLLL*KQFNPFVSYCHMESIIKSHSAILYRTRKGWHTTHIFSNCYGLGK*TMNHVINQH 159
Query: 1483 *VNYCINISGKSKILAIVPSECHL*SMVSIHH 1388
+N+ I IS KSK+L+I+PSEC+L*SM+ +HH
Sbjct: 158 QINHSIYISSKSKVLSIIPSECYL*SMMGVHH 63
Score = 84.5 bits (178), Expect(3) = 6e-032
Identities = 49/105 (46%), Positives = 56/105 (53%)
Frame = +3 / +1
Query: 1326 MRDGGLKNINLMGFDLMG*PP*CILTMDYK*HSLGTMASILDLPLMLMQ*FT*CW*TILF 1505
M GG ++INLMG LM * *C MDY+*HSLG M S LDL LM M F *CW F
Sbjct: 1 MPAGGWRSINLMGLGLMV*HL*CTPIMDYR*HSLGIMLSTLDLLLM*MLWFI*CWLMT*F 180
Query: 1506 VGFIQKLYPLAKMSAECLHFVSLSKMXXXXXXXXFIWLSQTNGLN 1640
+ + + L KM C F+ L KM IW TNGLN
Sbjct: 181 MVYFPRP*QLEKM*VVCQPFLVLYKMAEWDLIIDSIWQ*LTNGLN 315
Score = 82.6 bits (174), Expect(2) = 4e-039
Identities = 48/105 (45%), Positives = 55/105 (52%)
Frame = -1 / -1
Query: 1640 VQSICLGQPYEDDNQNQHHHLGQGYKM*AFR*HLRQWIQLLDKAHE*DRLPALGKLLHQH 1461
+QSIC PY DNQ HL Q K A+ HL Q + + HE PA K H H
Sbjct: 315 IQSICQLLPYGVDNQIPLRHLVQNEKRLAYHSHLLQLLWPGEIDHESCH*PASNKPQHLH 136
Query: 1460 QWQIQNTRHSSQ*MSLVIHGEYTSWRSPHQIETHQIYILQATISH 1326
Q QIQ+T+H+SQ*M VIH TS HQ THQIY T H
Sbjct: 135 Q*QIQSTQHNSQ*MLPVIHDGCTS*MLHHQT*THQIYTPPTTSGH 1
Score = 64.8 bits (135), Expect(3) = 6e-032
Identities = 35/64 (54%), Positives = 39/64 (60%)
Frame = +3 / +1
Query: 1764 RQLHSG*WIRICMISWLWTGLQRLASIVG*HYIK*LGLSQWV*EVKAI*ISWEMSLGILN 1943
RQ G W RICMI W L+ IV * + +* LSQWV* VK I*ISWEM+L N
Sbjct: 442 RQ*PFGSWTRICMILWHLISLRLQP*IVE*LFTR*SDLSQWV*VVKGI*ISWEMNLDTQN 621
Query: 1944 G*IF 1955
G IF
Sbjct: 622 GLIF 633
Score = 28.6 bits (56), Expect(3) = 6e-032
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 1656 TNIGKWVTSCTP*QIEGGLKS 1718
T IGKWV QIEGGL++
Sbjct: 334 TRIGKWVILYLHYQIEGGLRN 396
>gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_11_E09_A029 5', mRNA sequence
Length = 700
Score = 190 bits (409), Expect(3) = 1e-094
Identities = 75/107 (70%), Positives = 86/107 (80%)
Frame = +2 / +1
Query: 1640 LLKQSDEYWEMGDIVHTLTNRRWLEKCVTYCESHDQALVGDKTIAFWLMDKDMYDFMALD 1819
L + DE W M +IV TLTNRR+ EKCV Y ESHDQ++VGDKTIAF LMDK+MY M+
Sbjct: 151 LKHKRDEQWSMQEIVLTLTNRRYTEKCVAYAESHDQSIVGDKTIAFTLMDKEMYSAMSCL 330
Query: 1820 RPSTPRIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDFPR 1960
+ +P +DRGIALHKMI +TM LGGEGYLNFMGNEFGHPEWIDFPR
Sbjct: 331 QSPSPVVDRGIALHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPR 471
Score = 122 bits (261), Expect(3) = 5e-052
Identities = 64/102 (62%), Positives = 68/102 (66%)
Frame = -3 / -3
Query: 1959 LGKSIHSGCPNSFPMKFR*PSPPKPIVTSLIILCNAIPRSMRGVEGLSRAMKSYISLSIN 1780
LGKSIHSG PNSFP+K R*PSPP IV IIL +AIPRS G M YISLSI
Sbjct: 470 LGKSIHSG*PNSFPIKLR*PSPPSAIVMK*IIL*SAIPRSTTGEGDCKHDMAEYISLSIK 291
Query: 1779 QNAIVLSPTRA*S*LSQ*VTHFSSHLLFVKVCTMSPISQYSS 1654
NAIVLSPT *S*LS THFS +LL V V T+S I SS
Sbjct: 290 VNAIVLSPTID*S*LSAYATHFSVYLLLVSVSTISCIDHCSS 165
Score = 109 bits (232), Expect(3) = 1e-094
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = +2 / +1
Query: 1997 GNNNSFDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEGKYEFMTSDHSYVSRKHEEDKVI 2176
GN S++KCRR+++L D D+LRY+ M FD+AM L+ K+ F+ S VS +EEDKVI
Sbjct: 475 GNGWSYEKCRRQWNLVDTDHLRYKFMNNFDKAMNELDEKFHFLASSKQIVSSANEEDKVI 654
Query: 2177 IFERGDLVFVFNFH 2218
+FERGD+VFVFNFH
Sbjct: 655 VFERGDIVFVFNFH 696
Score = 89.5 bits (189), Expect(3) = 1e-094
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = +2 / +1
Query: 1499 LIRGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLHMAVPDKWIELLK 1648
LIR +YP+A I EDVSGMPT PV +GG+GFDYRL MA+PDKWIE LK
Sbjct: 7 LIRNIYPDATVIAEDVSGMPTLGRPVSEGGLGFDYRLAMAIPDKWIEYLK 156
Score = 72.5 bits (152), Expect(3) = 5e-052
Identities = 35/55 (63%), Positives = 40/55 (72%)
Frame = -3 / -3
Query: 1659 SSLCFRSSIHLSGTAI*RR*SKPTPPSWTGIQNVGIPLTSSPMDTASG*SPRIRS 1495
S LCF+ SIHLSG AI RR*S P+PPS TG VGIP TSS + ASG* R+R+
Sbjct: 167 SRLCFKYSIHLSGIAIARR*SNPSPPSETGRPKVGIPETSSAITVASG*ILRMRN 3
Score = 60.2 bits (125), Expect(3) = 5e-026
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = -2 / -2
Query: 1972 TLRTSWKIYPFRMPKLISHEI*IAFTS*THCDKPNHFM*CYPTID 1838
T+ WK+ PFRM KLISH+I IA +* HC + NH + C PTI+
Sbjct: 483 TISFPWKVNPFRMTKLISHKIKIALAT*CHCYEMNHLVKCNPTIN 349
Score = 51.5 bits (106), Expect(3) = 5e-026
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = -2 / -2
Query: 1810 HEIIHILIHQPECNCLVTNKSLIMTFTISDTLFKPPSIC*GVHDVTHFPIFVTLL 1646
H +H+L+H ECN LVTN LIMTF I +T + H H P+F++ +
Sbjct: 321 HGRVHLLVH*GECNSLVTNN*LIMTFCICNTFLSISPVGQCEHYFLHRPLFISFM 157
Score = 50.6 bits (104), Expect(3) = 5e-052
Identities = 33/76 (43%), Positives = 37/76 (48%)
Frame = -3 / -3
Query: 2217 WKLNTKTKSPLSKMITLSSSCFRDTYE*SDVMNSYFPSRCCIAWSNSCIPRYLR*SASPR 2038
WKL T T SP SK ITLSSS T D F S +A S I YLR*S S +
Sbjct: 695 WKLKTNTISPRSKTITLSSSFALLTICFDDARK*NFSSSSFMALSKLFINLYLR*SVSTK 516
Query: 2037 SNLRRHLSKLLLFPGM 1990
+ H S L FP +
Sbjct: 515 FHCLLHFS*LQPFPSL 468
Score = 46.0 bits (94), Expect(3) = 5e-026
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -2 / -2
Query: 1651 LLQKFNPFVWDSHMKTIIKTNTTILDRDTKCRHSADIFAN 1532
+LQ FNP VW+SH IIK+ +T +R T H+ +IF N
Sbjct: 159 MLQIFNPLVWNSHC*AIIKSKSTFRNRPT*SWHTRNIFRN 40
>gb|DR088818.1|DR088818 RTAL1_4_F06.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_4_F06_A029 5', mRNA sequence
Length = 638
Score = 179 bits (386), Expect(2) = 4e-086
Identities = 74/107 (69%), Positives = 82/107 (76%)
Frame = +2 / +2
Query: 1640 LLKQSDEYWEMGDIVHTLTNRRWLEKCVTYCESHDQALVGDKTIAFWLMDKDMYDFMALD 1819
L + D+ W+MG+IV TL NRR LEK V Y ESHDQALVGDKTIAFWLMDK+MY M+
Sbjct: 284 LRHKQDDEWDMGNIVQTLVNRRHLEKSVAYAESHDQALVGDKTIAFWLMDKEMYTNMSDL 463
Query: 1820 RPSTPRIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDFPR 1960
TP I RGIALHKMIRL+ LGGE YLNF G EFGHPEW+DFPR
Sbjct: 464 TEMTPIISRGIALHKMIRLLVHALGGEAYLNFEGYEFGHPEWLDFPR 604
Score = 161 bits (346), Expect(2) = 4e-086
Identities = 62/100 (62%), Positives = 73/100 (73%)
Frame = +2 / +2
Query: 1361 GFRFDGVTSMMYTHHGLQVTFTGNYGEYFGFATDVDAVVYLMLVNDLIRGLYPEAVSIGE 1540
GFRFDGVTSMMY HHG+ F+G Y EYF D++ VVYLML ND + LYP ++I E
Sbjct: 2 GFRFDGVTSMMYLHHGIGTGFSGGYHEYFEDKVDLEGVVYLMLANDAMHELYPHCITIAE 181
Query: 1541 DVSGMPTFCIPVQDGGVGFDYRLHMAVPDKWIELLKQSDE 1660
DVSGMP CIP +GGVGFDYRL MAVPD WI+LL+ +
Sbjct: 182 DVSGMPLLCIPTSNGGVGFDYRLSMAVPDMWIKLLRHKQD 301
Score = 116 bits (249), Expect(2) = 1e-048
Identities = 63/108 (58%), Positives = 71/108 (65%)
Frame = -3 / -3
Query: 1956 GKSIHSGCPNSFPMKFR*PSPPKPIVTSLIILCNAIPRSMRGVEGLSRAMKSYISLSINQ 1777
GKS HSG PNS+P K R* SPP SLIIL +AIPR M GV + M YISLSINQ
Sbjct: 600 GKSSHSG*PNSYPSKLR*ASPPSA*TRSLIIL*SAIPRDMIGVISVKSDMFVYISLSINQ 421
Query: 1776 NAIVLSPTRA*S*LSQ*VTHFSSHLLFVKVCTMSPISQYSSLCFRSSI 1633
NAIVLSPTRA S*LS T FS L F +V T+ P+S SS S++
Sbjct: 420 NAIVLSPTRAWS*LSAYATLFSRCLRFTRV*TILPMSHSSSCLCLSNL 277
Score = 99.1 bits (210), Expect(2) = 1e-048
Identities = 51/100 (51%), Positives = 61/100 (61%)
Frame = -3 / -3
Query: 1659 SSLCFRSSIHLSGTAI*RR*SKPTPPSWTGIQNVGIPLTSSPMDTASG*SPRIRSFTSIR 1480
S LC + IH+SGTA+ +R*SKPTPP G+Q GIP TSS + G + + SF S+R
Sbjct: 300 SCLCLSNLIHISGTAMDKR*SKPTPPLEVGMQRSGIPETSSAIVMQWGYNSCMASFASMR 121
Query: 1479 *TTASTSVANPKYSP*FPVNVTCNPW*VYIMEVTPSNRNP 1360
TT S S + KYS * P PW YIM VTPSNR P
Sbjct: 120 YTTPSKSTLSSKYSW*PPEKPVPMPWWRYIMLVTPSNRKP 1
Score = 84.0 bits (177), Expect(2) = 9e-023
Identities = 40/105 (38%), Positives = 61/105 (58%)
Frame = -2 / -2
Query: 1954 KIYPFRMPKLISHEI*IAFTS*THCDKPNHFM*CYPTIDARR*RPVQSHEIIHILIHQPE 1775
K+ P + KLIS EI I+F++ +KP+H + C T RR H +H+ +HQPE
Sbjct: 598 KVEPLGVTKLISFEIEISFSTQCVNEKPDHLVKCNTTRYDRRHLSQIGHVRVHLFVHQPE 419
Query: 1774 CNCLVTNKSLIMTFTISDTLFKPPSIC*GVHDVTHFPIFVTLLQK 1640
+ LVT+K L+MT + + L PSI ++D+TH P V L+ +
Sbjct: 418 RDRLVTDKGLVMTLGVCNALL*VPSIYESLNDITHVPFIVLLVSE 284
Score = 45.1 bits (92), Expect(2) = 9e-023
Identities = 21/83 (25%), Positives = 41/83 (49%)
Frame = -2 / -2
Query: 1636 NPFVWDSHMKTIIKTNTTILDRDTKCRHSADIFANGYSFWIKPTNKIVYQH*VNYCINIS 1457
+P + DSH TI++ + +I D + RH+ DI N + + + IV +H V +
Sbjct: 277 DPHIRDSHG*TIVEAHPSIRGGDAEKRHTGDILGNRDAMGV*LVHGIVCEHEVYDTFQVD 98
Query: 1456 GKSKILAIVPSECHL*SMVSIHH 1388
++ + P + ++V +HH
Sbjct: 97 FILEVFVVTPRKASADAVVEVHH 29
>dbj|BD236173.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 476
Score = 295 bits (639), Expect = 9e-079
Identities = 109/158 (68%), Positives = 132/158 (83%)
Frame = +2 / +3
Query: 932 EPKINTYANFRDEVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEDL 1111
EP++ TY F LPRIKKLGYN +Q+MA+ EH+YYASFGY VT+FFA SSR+GTPE+L
Sbjct: 3 EPRVGTYKEFTLNTLPRIKKLGYNVIQLMAVMEHAYYASFGYQVTSFFAASSRYGTPEEL 182
Query: 1112 KSLIDKAHELGLLVLMDIVHSHSSNNTLDGLNGFDGTDTHYFHGGPRGHHWMWDSRLFNY 1291
K LID AH +G+ VL+D+VHSH+ N LDGLN FDGTD YFHGGP+G+H +WDSRLFNY
Sbjct: 183 KELIDTAHSMGITVLLDVVHSHACKNVLDGLNQFDGTDHQYFHGGPKGYHDLWDSRLFNY 362
Query: 1292 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHH 1405
+EVLRFL+SN R+W+EEY+FDGFRFDGVTSM+Y HH
Sbjct: 363 SHYEVLRFLMSNLRFWMEEYQFDGFRFDGVTSMLYLHH 476
Score = 120 bits (256), Expect = 6e-026
Identities = 68/140 (48%), Positives = 74/140 (52%)
Frame = -3 / -2
Query: 1395 YIMEVTPSNRNPSNLYSSSHHLAFDNRNLKTSQLP*LNRRESHIQ*WPRGPPWK*CVSVP 1216
Y + VTPS R PSN YSS D R +TS *L RR SH +P GPPWK SVP
Sbjct: 466 YNILVTPSKRKPSN*YSSIQKRRLDIRKRRTS**E*LKRRLSHKSWYPFGPPWKYWWSVP 287
Query: 1215 SKPFKPSKVLFDE*LXXXXXXXXXXXSCALSIRDFRSSGVPKRLLGAKKFVTWYPKLA** 1036
S FKPS * CA+SI SSGVP R L AKK VT PK A**
Sbjct: 286 SNWFKPSSTFLQA*ECTTSSNTVMPIECAVSISSLSSSGVPYRELAAKKLVT**PKEA** 107
Query: 1035 ECSWIAIICTALYPSFLILG 976
CS AI LYP+FL+ G
Sbjct: 106 ACSITAISWITLYPNFLMRG 47
>dbj|BD236171.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 375
Score = 271 bits (586), Expect = 2e-071
Identities = 103/124 (83%), Positives = 113/124 (91%)
Frame = +2 / +3
Query: 608 DFNNWNPNADAMARNEYGVWEIFLPNNADGSPAIPHGSRVKIRMDTPSGVKDSIPAWIKF 787
DFNNWNPNAD M +NE+GVWEIFLPNNADGSP IPHGSRVKI MDT SG KD+IPAWIKF
Sbjct: 3 DFNNWNPNADVMTKNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTISGPKDAIPAWIKF 182
Query: 788 SVQAPGEIPYNGIYYDPPEEEKYVFKHPQPKRPKSLRIYESHVGMSSPEPKINTYANFRD 967
+VQAPGEIPYNGIYYDPP E+KY FK+P+PK+PKSLRIYE+HVGMSS EPKINTY FRD
Sbjct: 183 AVQAPGEIPYNGIYYDPPPEDKYEFKYPRPKQPKSLRIYEAHVGMSSTEPKINTYVEFRD 362
Query: 968 EVLP 979
+VLP
Sbjct: 363 DVLP 374
Score = 189 bits (408), Expect = 6e-047
Identities = 87/124 (70%), Positives = 94/124 (75%)
Frame = -3 / -3
Query: 978 GSTSSLKLAYVFIFGSGLLIPTCDSYIRSDLGRLG*GCLNTYFSSSGGS*YIPLYGISPG 799
GSTSSL YV I GS LL+PTC SYIR+DLG G G LN+Y SS GGS*YIPLYGISPG
Sbjct: 373 GSTSSLNSTYVLILGSVLLMPTCASYIRNDLGCFGRGYLNSYLSSGGGS*YIPLYGISPG 194
Query: 798 ACTENLIQAGMESLTPDGVSIRIFTREP*GIAGEPSALLGRKISQTPYSFLAIASAFGFQ 619
A T NLIQAG+ S P+ VSI I TR+P GI GEPSAL G+ IS TP SFL I SA GFQ
Sbjct: 193 A*TANLIQAGIASFGPEIVSICILTRDPWGIGGEPSALFGKNISHTPNSFLVITSALGFQ 14
Query: 618 LLKS 607
LLKS
Sbjct: 13 LLKS 2
Score = 132 bits (283), Expect = 1e-029
Identities = 60/124 (48%), Positives = 85/124 (68%)
Frame = -2 / -2
Query: 979 WKHLISEVSICIYLWFRATHSNM*FIYPQ*LGPLRLRVFEYIFLLFRWVIIYTVVWYFTW 800
W ++I E++ICI FRA H+NM FIY Q* G L R+ ++IF+L R +IIY++VW T
Sbjct: 374 W*YIIPELNICINFGFRAAHANMRFIYSQ*FGLLWSRILKFIFILRRGIIIYSIVWNLTR 195
Query: 799 SLHRKLDPGRNGILNTRWCVHPYLYT*AMRNSRGTISIVRQENLPNAVLISGHSISIWVP 620
SL+ KL+P R+ +L +R C+H YL T +M N TI IV + LP + L+ H+ISI +P
Sbjct: 194 SLNSKLNPSRDCVLWSRNCIHMYLNTRSMGNWWRTICIVW*KYLPYSKLVLSHNISIGIP 15
Query: 619 VVEV 608
VVE+
Sbjct: 14 VVEI 3
Score = 103 bits (220), Expect = 5e-021
Identities = 55/117 (47%), Positives = 71/117 (60%)
Frame = +1 / +2
Query: 613 QQLEPKC*CYGQK*VRRLGDFPA*QC*WFPCYSSWLTCKDTDGHTIWC*GFHSCLDQVFC 792
QQLE +C*CY + V +GD QC WF S W++C DT G+ G + CLD V C
Sbjct: 8 QQLESQC*CYD*ERVWSMGDIFTKQCRWFSTNSPWISC*DTYGYNFGTKGRNPCLD*VCC 187
Query: 793 AGSR*NTIQRYIL*PT*RGEICIQTPST*AAQVTADI*ITCWNE*PGTKDKYIC*LQ 963
+ S *++IQ IL* G I I ST AAQ+ A+I* CW+E GT++ YIC*+Q
Sbjct: 188 SSSG*DSIQWNIL*SPS*G*I*I*VSSTKAAQIIANI*SACWHEQHGTQN*YIC*VQ 358
>dbj|BD236170.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 451
Score = 196 bits (423), Expect(2) = 4e-050
Identities = 71/101 (70%), Positives = 88/101 (87%)
Frame = +2 / +3
Query: 347 VEEKPRVIPPPGDGQRIYEIDPMLEGFRGHLDYRYSEYKRLRAAIDQHEGGLDAFSRGYE 526
+E++P+V+PPPG GQRIYEIDP+L +R HLDYR+++YK+ R ID++EGGL+AFSRGYE
Sbjct: 129 LEDRPKVVPPPGSGQRIYEIDPLLNNYREHLDYRFAQYKKTRELIDKYEGGLEAFSRGYE 308
Query: 527 KLGFTRSAEGITYREWAPGAYSAALVGDFNNWNPNADAMAR 649
K+GF RSA GITYREWAPGA A+L+GDFNNWNPNAD M R
Sbjct: 309 KMGFNRSAAGITYREWAPGAKGASLIGDFNNWNPNADVMLR 431
Score = 126 bits (269), Expect = 1e-027
Identities = 65/102 (63%), Positives = 71/102 (69%)
Frame = -3 / -1
Query: 648 LAIASAFGFQLLKSPTNAAEYAPGAHSL*VIPSALRVNPSFS*PRENASKPPSC*SIAAR 469
L+I SA GFQLLKSP + A APGAHSL VIP+AL +NP FS*P ENASKPPS SI +
Sbjct: 430 LSITSALGFQLLKSPISDAPLAPGAHSLYVIPAALLLNPIFS*PLENASKPPSYLSINSL 251
Query: 468 NLLYSLYR*SR*PRNPSNIGSISYIRWPSPGGGITRGFSSTS 343
LY R*SR R N GSIS I WP PGGG T G SS+S
Sbjct: 250 VFLYCANR*SRCSR*LFNNGSIS*ILWPLPGGGTTFGRSSSS 125
Score = 24.0 bits (46), Expect(2) = 4e-050
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +2 / +2
Query: 644 ARNEYGVWE 670
A+NE+GVWE
Sbjct: 425 AKNEFGVWE 451
>dbj|BD236172.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 408
Score = 112 bits (240), Expect(2) = 4e-048
Identities = 44/79 (55%), Positives = 59/79 (74%)
Frame = +2 / +3
Query: 1997 GNNNSFDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEGKYEFMTSDHSYVSRKHEEDKVI 2176
GN S++KCRR+++L D D+LRY+ M FD+AM L+ K+ F+ S VS +EEDKVI
Sbjct: 165 GNGWSYEKCRRQWNLVDTDHLRYKFMNNFDKAMNELDEKFHFLASSKQIVSIANEEDKVI 344
Query: 2177 IFERGDLVFVFNFHWSNSY 2233
+FERGD+VFVFNFH N+Y
Sbjct: 345 VFERGDIVFVFNFHPKNTY 401
Score = 101 bits (215), Expect(2) = 4e-048
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +2 / +3
Query: 1829 TPRIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDFPR 1960
+P +DRGIALHKMI +TM LGGEGYLNFMGNEFGHPEWIDFPR
Sbjct: 30 SPVVDRGIALHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPR 161
>dbj|BD236175.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 258
Score = 185 bits (399), Expect = 1e-045
Identities = 73/85 (85%), Positives = 78/85 (91%)
Frame = +2 / +2
Query: 1382 TSMMYTHHGLQVTFTGNYGEYFGFATDVDAVVYLMLVNDLIRGLYPEAVSIGEDVSGMPT 1561
TSMMYTHHGLQV FTGNY EYFGFATDVDAVVYLMLVND+I GL+P+A++IGEDVSGMPT
Sbjct: 2 TSMMYTHHGLQVAFTGNYAEYFGFATDVDAVVYLMLVNDMIHGLFPQAITIGEDVSGMPT 181
Query: 1562 FCIPVQDGGVGFDYRLHMAVPDKWI 1636
F VQDGGVGFDYRLHMAV DKWI
Sbjct: 182 FSRSVQDGGVGFDYRLHMAVADKWI 256
Score = 126 bits (270), Expect = 7e-028
Identities = 61/86 (70%), Positives = 66/86 (76%)
Frame = -3 / -1
Query: 1638 SIHLSGTAI*RR*SKPTPPSWTGIQNVGIPLTSSPMDTASG*SPRIRSFTSIR*TTASTS 1459
SIHLS TAI R*S PTPPS T + VGIPLTSSP+ A G P I S TSI+*TTASTS
Sbjct: 258 SIHLSATAIWSR*SNPTPPSCTEREKVGIPLTSSPIVMAWGNRP*IMSLTSIK*TTASTS 79
Query: 1458 VANPKYSP*FPVNVTCNPW*VYIMEV 1381
VANPKYS *FPVN TCNP VYI++V
Sbjct: 78 VANPKYSA*FPVNATCNP*WVYIIDV 1
>dbj|BD236176.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 349
Score = 185 bits (398), Expect = 2e-045
Identities = 66/94 (70%), Positives = 83/94 (88%)
Frame = +2 / +1
Query: 347 VEEKPRVIPPPGDGQRIYEIDPMLEGFRGHLDYRYSEYKRLRAAIDQHEGGLDAFSRGYE 526
+E++P+V+PPPG GQRIYEIDP+L +R HLDYR+++YK+ R ID++EGGL+AFSRGYE
Sbjct: 55 LEDRPKVVPPPGSGQRIYEIDPLLNNYREHLDYRFAQYKKTRELIDKYEGGLEAFSRGYE 234
Query: 527 KLGFTRSAEGITYREWAPGAYSAALVGDFNNWNP 628
K+GF RSA GITYREWAPGA A+L+GDFNNWNP
Sbjct: 235 KMGFNRSAAGITYREWAPGAKGASLIGDFNNWNP 336
Score = 118 bits (253), Expect = 2e-025
Identities = 61/97 (62%), Positives = 67/97 (69%)
Frame = -3 / -3
Query: 633 AFGFQLLKSPTNAAEYAPGAHSL*VIPSALRVNPSFS*PRENASKPPSC*SIAARNLLYS 454
+ GFQLLKSP + A APGAHSL VIP+AL +NP FS*P ENASKPPS SI + LY
Sbjct: 341 SIGFQLLKSPISDAPLAPGAHSLYVIPAALLLNPIFS*PLENASKPPSYLSINSLVFLYC 162
Query: 453 LYR*SR*PRNPSNIGSISYIRWPSPGGGITRGFSSTS 343
R*SR R N GSIS I WP PGGG T G SS+S
Sbjct: 161 ANR*SRCSR*LFNNGSIS*ILWPLPGGGTTFGRSSSS 51
>gb|DR088754.1|DR088754 RTAL1_4_F06.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_4_F06_A029 3', mRNA sequence
Length = 571
Score = 148 bits (318), Expect = 2e-034
Identities = 62/140 (44%), Positives = 89/140 (63%)
Frame = +2 / +1
Query: 1997 GNNNSFDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEGKYEFMTSDHSYVSRKHEEDKVI 2176
GNNNS+ RR++++ D LRYR + FD M + E KY ++ + +YVS K+E DKVI
Sbjct: 10 GNNNSYHYARRQWNVVDDAVLRYRYLNGFDSEMNNTEEKYGWLAAPQAYVSLKNEVDKVI 189
Query: 2177 IFERGDLVFVFNFHWSNSYFDYRVGCFKPGKYKIVLDSDDGLFGGFSRLDHDAEYFTADW 2356
+FER L+FVFNFH + S+ DYR+G + G+Y ++L +DD FGGF +D +Y T
Sbjct: 190 VFERAGLLFVFNFHPTKSFSDYRIGVEEAGEYHVILSTDDKRFGGFENIDTSVKYKTTPL 369
Query: 2357 PHDNRPCSFSVYAPSRTAVV 2416
+ R VY PSRTA++
Sbjct: 370 EWNGRKNWTQVYIPSRTAMI 429
>gb|CO364026.1|CO364026 RTK1_13_F04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_F04_A029 3', mRNA sequence
Length = 852
Score = 129 bits (277), Expect = 8e-029
Identities = 49/90 (54%), Positives = 65/90 (72%)
Frame = +2 / +3
Query: 2081 FDQAMQHLEGKYEFMTSDHSYVSRKHEEDKVIIFERGDLVFVFNFHWSNSYFDYRVGCFK 2260
FD+AM L+ K+ F+ S VS +EEDKVI+FERGD+VFVFNFH N+Y Y++GC
Sbjct: 3 FDKAMNELDEKFHFLASSKQIVSSANEEDKVIVFERGDIVFVFNFHPKNTYSGYKIGCDM 182
Query: 2261 PGKYKIVLDSDDGLFGGFSRLDHDAEYFTA 2350
PGKY++ LDSD FGG R+ HD ++FT+
Sbjct: 183 PGKYRVALDSDALEFGGHGRVSHDVDHFTS 272
>gb|CO364190.1|CO364190 RTK1_14_F04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_F04_A029 3', mRNA sequence
Length = 847
Score = 127 bits (271), Expect = 5e-028
Identities = 48/89 (53%), Positives = 64/89 (71%)
Frame = +2 / +1
Query: 2084 DQAMQHLEGKYEFMTSDHSYVSRKHEEDKVIIFERGDLVFVFNFHWSNSYFDYRVGCFKP 2263
D+AM L+ K+ F+ S VS +EEDKVI+FERGD+VFVFNFH N+Y Y++GC P
Sbjct: 1 DKAMNELDEKFHFLASSKQIVSSANEEDKVIVFERGDIVFVFNFHPKNTYSGYKIGCDMP 180
Query: 2264 GKYKIVLDSDDGLFGGFSRLDHDAEYFTA 2350
GKY++ LDSD FGG R+ HD ++FT+
Sbjct: 181 GKYRVALDSDALEFGGHGRVSHDVDHFTS 267
>gb|DR019864.1|DR019864 STRS1_33_A09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_A09_A034 3', mRNA sequence
Length = 867
Score = 127 bits (271), Expect = 5e-028
Identities = 48/89 (53%), Positives = 64/89 (71%)
Frame = +2 / +1
Query: 2084 DQAMQHLEGKYEFMTSDHSYVSRKHEEDKVIIFERGDLVFVFNFHWSNSYFDYRVGCFKP 2263
D+AM L+ K+ F+ S VS +EEDKVI+FERGD+VFVFNFH N+Y Y++GC P
Sbjct: 1 DKAMNELDEKFHFLASSKQIVSSANEEDKVIVFERGDIVFVFNFHPKNTYSGYKIGCDMP 180
Query: 2264 GKYKIVLDSDDGLFGGFSRLDHDAEYFTA 2350
GKY++ LDSD FGG R+ HD ++FT+
Sbjct: 181 GKYRVALDSDALEFGGHGRVSHDVDHFTS 267
>gb|DR059847.1|DR059847 RTNIT1_20_D09.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_20_D09_A029 3', mRNA sequence
Length = 726
Score = 120 bits (257), Expect = 4e-026
Identities = 44/107 (41%), Positives = 64/107 (59%)
Frame = +2 / -2
Query: 362 RVIPPPGDGQRIYEIDPMLEGFRGHLDYRYSEYKRLRAAIDQHEGGLDAFSRGYEKLGFT 541
R I + + +DP L + H YRY++Y + + AI+++EG L+ FS GY K GF
Sbjct: 323 RTIEDELENLAVLTVDPSLASHKAHFQYRYTKYLQQKQAIEKYEGSLEDFSEGYLKFGFN 144
Query: 542 RSAEGITYREWAPGAYSAALVGDFNNWNPNADAMARNEYGVWEIFLP 682
R I YREWAP A A L+GDFN WN M ++++GVW +++P
Sbjct: 143 REGNKIVYREWAPAAKEAQLIGDFNAWNGMGHQMEKDKFGVWTVYIP 3
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,587,385,588
Number of Sequences: 355925
Number of extensions: 25471382
Number of successful extensions: 116657
Number of sequences better than 1.0e-020: 16
length of database: 72,425,745
effective HSP length: 56
effective length of database: 52,493,945
effective search space used: 45249780590
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)