TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591194.2.1
(591 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Ve... 141 5e-033
gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Ver... 141 5e-033
gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pi... 141 5e-033
gb|CO158324.1|CO158324 FLD1_6_E04.b1_A029 Root flooded Pinu... 141 5e-033
gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated wi... 141 5e-033
gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated wi... 141 5e-033
gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated w... 141 5e-033
gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calc... 141 5e-033
gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calc... 141 5e-033
gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus mag... 141 5e-033
gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control P... 139 2e-032
gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated w... 139 2e-032
gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch... 139 2e-032
gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus cal... 126 2e-028
gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciat... 124 4e-028
gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pi... 122 2e-027
gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control P... 122 2e-027
gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism... 122 2e-027
gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism... 122 2e-027
gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus pota... 122 2e-027
gb|DR079744.1|DR079744 RTFEPL1_17_G07.b1_A029 Roots plus ad... 122 2e-027
gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciat... 122 3e-027
gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciat... 122 3e-027
gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine ro... 122 3e-027
gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine ro... 122 3e-027
gb|DR091892.1|DR091892 RTAL1_24_D12.g1_A029 Roots plus adde... 122 3e-027
gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus... 120 7e-027
gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus... 116 1e-025
gb|CO201574.1|CO201574 RTCNT2_6_E06.g1_A029 Root control 2 ... 113 1e-024
gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side ... 112 2e-024
gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus... 93 2e-023
gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus m... 93 2e-023
gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus ... 93 2e-023
gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism... 93 2e-023
gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control P... 93 2e-023
gb|CF663211.1|CF663211 RTCNT1_1_B03.g1_A029 Root control Pi... 92 2e-023
gb|CF479761.1|CF479761 RTWW3_12_E10.b1_A022 Well-watered lo... 92 2e-023
gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pi... 106 1e-022
gb|BM367221.1|BM367221 NXLV_046_C05_F NXLV (Nsf Xylem Late ... 102 2e-021
gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciat... 100 9e-021
>gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D08 5', mRNA sequence
Length = 504
Score = 141 bits (302), Expect = 5e-033
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -1 / +2
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 176 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 355
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 356 IPNNALKCGRAG*RVTGGL* 415
>gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D08 5' similar to Arabidopsis thaliana sequence
At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 504
Score = 141 bits (302), Expect = 5e-033
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -1 / +2
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 176 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 355
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 356 IPNNALKCGRAG*RVTGGL* 415
>gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 3', mRNA sequence
Length = 730
Score = 141 bits (302), Expect = 5e-033
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 271 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 450
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 451 IPNNALKCGRAG*RVTGGL* 510
>gb|CO158324.1|CO158324 FLD1_6_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_6_E04_A029 3', mRNA sequence
Length = 705
Score = 141 bits (302), Expect = 5e-033
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 247 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 426
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 427 IPNNALKCGRAG*RVTGGL* 486
>gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 3', mRNA sequence
Length = 825
Score = 141 bits (302), Expect = 5e-033
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 373 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 552
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 553 IPNNALKCGRAG*RVTGGL* 612
>gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 5', mRNA sequence
Length = 846
Score = 141 bits (302), Expect = 5e-033
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -1 / +2
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 392 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 571
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 572 IPNNALKCGRAG*RVTGGL* 631
>gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_G10_A032 3', mRNA sequence
Length = 696
Score = 141 bits (302), Expect = 5e-033
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 241 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 420
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 421 IPNNALKCGRAG*RVTGGL* 480
>gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F12_A029 3', mRNA sequence
Length = 664
Score = 141 bits (302), Expect = 5e-033
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 202 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 381
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 382 IPNNALKCGRAG*RVTGGL* 441
>gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F12_A029 5', mRNA sequence
Length = 655
Score = 141 bits (302), Expect = 5e-033
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 169 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 348
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 349 IPNNALKCGRAG*RVTGGL* 408
>gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_E02_A029 3', mRNA sequence
Length = 834
Score = 141 bits (302), Expect = 5e-033
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 373 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 552
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 553 IPNNALKCGRAG*RVTGGL* 612
>gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_F03_A029 3', mRNA sequence
Length = 703
Score = 139 bits (298), Expect = 2e-032
Identities = 57/80 (71%), Positives = 64/80 (80%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSP S+RDE
Sbjct: 244 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSFRDEYS 423
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 424 IPNNALKCGRAG*RVTGGL* 483
>gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_22_E05_A032 5', mRNA sequence
Length = 669
Score = 139 bits (298), Expect = 2e-032
Identities = 54/71 (76%), Positives = 61/71 (85%)
Frame = -1 / +3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSPA S+RDE
Sbjct: 450 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYS 629
Query: 402 IPKNALLCGRA 370
IP NAL CGRA
Sbjct: 630 IPNNALKCGRA 662
>gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_H11_A034 3', mRNA sequence
Length = 784
Score = 139 bits (298), Expect = 2e-032
Identities = 57/80 (71%), Positives = 64/80 (80%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+ ++R T QVYP SWTAI +PLDNVGMWN+RSE+WARQYLGQQFYLRVYSP S+RDE
Sbjct: 322 DTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSFRDEYS 501
Query: 402 IPKNALLCGRASGRRTRPL* 343
IP NAL CGRA R T L*
Sbjct: 502 IPNNALKCGRAG*RVTGGL* 561
>gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 3', mRNA sequence
Length = 751
Score = 126 bits (269), Expect = 2e-028
Identities = 50/78 (64%), Positives = 59/78 (75%)
Frame = -1 / +2
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYPQSWTAI + DN GMWN+RSE+W RQ+LGQQ Y+RV SP S RDE
Sbjct: 386 DAVSRCTTQVYPQSWTAILLTFDNAGMWNLRSETWPRQFLGQQTYVRVRSPVRSLRDEFN 565
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A GR P
Sbjct: 566 IPHNALLCGKARGRPRLP 619
>gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP061D03, mRNA sequence
Length = 707
Score = 124 bits (266), Expect = 4e-028
Identities = 47/78 (60%), Positives = 60/78 (76%)
Frame = -1 / +3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYP SWTAI++ DN G+WN+RS++W RQ+LGQQ Y+RV SP S RDE
Sbjct: 183 DAVSRCTTQVYPNSWTAIFLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYD 362
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A+GR P
Sbjct: 363 IPHNALLCGKATGRPRLP 416
>gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_D04_A029 3', mRNA sequence
Length = 647
Score = 122 bits (262), Expect = 2e-027
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = -1 / +2
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYP SWTAI + DN G+WN+RS++W RQ+LGQQ Y+RV SP S RDE
Sbjct: 131 DAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYD 310
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A+GR P
Sbjct: 311 IPHNALLCGKATGRPRLP 364
>gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_B12_A029 3', mRNA sequence
Length = 739
Score = 122 bits (262), Expect = 2e-027
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = -1 / +3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYP SWTAI + DN G+WN+RS++W RQ+LGQQ Y+RV SP S RDE
Sbjct: 345 DAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYD 524
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A+GR P
Sbjct: 525 IPHNALLCGKATGRPRLP 578
>gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 3', mRNA sequence
Length = 805
Score = 122 bits (262), Expect = 2e-027
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = -1 / +3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYP SWTAI + DN G+WN+RS++W RQ+LGQQ Y+RV SP S RDE
Sbjct: 408 DAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYD 587
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A+GR P
Sbjct: 588 IPHNALLCGKATGRPRLP 641
>gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 5', mRNA sequence
Length = 883
Score = 122 bits (262), Expect = 2e-027
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = -1 / +3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYP SWTAI + DN G+WN+RS++W RQ+LGQQ Y+RV SP S RDE
Sbjct: 468 DAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYD 647
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A+GR P
Sbjct: 648 IPHNALLCGKATGRPRLP 701
>gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_A07_A029 3', mRNA sequence
Length = 875
Score = 122 bits (262), Expect = 2e-027
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = -1 / +3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYP SWTAI + DN G+WN+RS++W RQ+LGQQ Y+RV SP S RDE
Sbjct: 387 DAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYD 566
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A+GR P
Sbjct: 567 IPHNALLCGKATGRPRLP 620
>gb|DR079744.1|DR079744 RTFEPL1_17_G07.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_17_G07_A029 3', mRNA sequence
Length = 575
Score = 122 bits (262), Expect = 2e-027
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYP SWTAI + DN G+WN+RS++W RQ+LGQQ Y+RV SP S RDE
Sbjct: 55 DAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYD 234
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A+GR P
Sbjct: 235 IPHNALLCGKATGRPRLP 288
>gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP077H07 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 681
Score = 122 bits (260), Expect = 3e-027
Identities = 48/78 (61%), Positives = 58/78 (74%)
Frame = -1 / +3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYPQSWTA+ + DN GMWN+RSE WARQYLGQQ Y++V + S RDE
Sbjct: 318 DAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYD 497
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A GR P
Sbjct: 498 IPHNALLCGKARGRPRLP 551
>gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085B04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 613
Score = 122 bits (260), Expect = 3e-027
Identities = 48/78 (61%), Positives = 58/78 (74%)
Frame = -1 / +2
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYPQSWTA+ + DN GMWN+RSE WARQYLGQQ Y++V + S RDE
Sbjct: 203 DAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYD 382
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A GR P
Sbjct: 383 IPHNALLCGKARGRPRLP 436
>gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 3', mRNA
sequence
Length = 630
Score = 122 bits (260), Expect = 3e-027
Identities = 48/78 (61%), Positives = 58/78 (74%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYPQSWTA+ + DN GMWN+RSE WARQYLGQQ Y++V + S RDE
Sbjct: 148 DAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYD 327
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A GR P
Sbjct: 328 IPHNALLCGKARGRPRLP 381
>gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 5', mRNA
sequence
Length = 732
Score = 122 bits (260), Expect = 3e-027
Identities = 48/78 (61%), Positives = 58/78 (74%)
Frame = -1 / -2
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYPQSWTA+ + DN GMWN+RSE WARQYLGQQ Y++V + S RDE
Sbjct: 443 DAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYD 264
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A GR P
Sbjct: 263 IPHNALLCGKARGRPRLP 210
>gb|DR091892.1|DR091892 RTAL1_24_D12.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_D12_A029 5', mRNA sequence
Length = 682
Score = 122 bits (260), Expect = 3e-027
Identities = 48/78 (61%), Positives = 58/78 (74%)
Frame = -1 / +3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYPQSWTA+ + DN GMWN+RSE WARQYLGQQ Y++V + S RDE
Sbjct: 9 DAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYD 188
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A GR P
Sbjct: 189 IPHNALLCGKARGRPRLP 242
>gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_C05_A029 3', mRNA sequence
Length = 733
Score = 120 bits (257), Expect = 7e-027
Identities = 46/78 (58%), Positives = 58/78 (74%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYP SWTAI + DN G+WN+RS++W R +LGQQ Y+RV SP S RDE
Sbjct: 175 DAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERHFLGQQTYVRVKSPVKSLRDEYD 354
Query: 402 IPKNALLCGRASGRRTRP 349
IP NALLCG+A+GR P
Sbjct: 355 IPHNALLCGKATGRPRLP 408
>gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_A01_A029 3', mRNA sequence
Length = 784
Score = 116 bits (248), Expect = 1e-025
Identities = 45/71 (63%), Positives = 55/71 (77%)
Frame = -1 / +2
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYPQSWTA+ + DN GMWN+RSE WARQYLGQQ Y++V + S RDE
Sbjct: 221 DAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYD 400
Query: 402 IPKNALLCGRA 370
IP NALLCG+A
Sbjct: 401 IPHNALLCGKA 433
>gb|CO201574.1|CO201574 RTCNT2_6_E06.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_6_E06_A029 5', mRNA sequence
Length = 654
Score = 113 bits (241), Expect = 1e-024
Identities = 43/72 (59%), Positives = 53/72 (73%)
Frame = -1 / +1
Query: 564 TLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNAL 385
T + YP SWTAI + DN G+WN+RS++W RQ+LGQQ Y+RV SP S RDE IP NAL
Sbjct: 109 TKKAYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNAL 288
Query: 384 LCGRASGRRTRP 349
LCG+A+GR P
Sbjct: 289 LCGKATGRPRLP 324
>gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_073_G01 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 478
Score = 112 bits (240), Expect = 2e-024
Identities = 43/70 (61%), Positives = 53/70 (75%)
Frame = -1 / +3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYPQSWTA+ + DN GMWN+RSE WARQYLGQQ Y++V + RDE
Sbjct: 195 DAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRXARDEYD 374
Query: 402 IPKNALLCGR 373
IP NALLCG+
Sbjct: 375 IPHNALLCGK 404
>gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 5', mRNA sequence
Length = 858
Score = 92.7 bits (196), Expect(2) = 2e-023
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = -1 / -3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRV 439
+A++R T QVYPQSWTAI + LDN GMWN+RS WARQYLGQQFY++V
Sbjct: 448 DAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 305
Score = 36.3 bits (73), Expect(2) = 2e-023
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1 / -3
Query: 414 DENPIPKNALLCGRASGRRTRP 349
DE P+NAL+CGRA G+ RP
Sbjct: 286 DEYSAPRNALMCGRARGQHPRP 221
>gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_35_F12_A029 3', mRNA sequence
Length = 817
Score = 92.7 bits (196), Expect(2) = 2e-023
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRV 439
+A++R T QVYPQSWTAI + LDN GMWN+RS WARQYLGQQFY++V
Sbjct: 322 DAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 465
Score = 36.3 bits (73), Expect(2) = 2e-023
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1 / +1
Query: 414 DENPIPKNALLCGRASGRRTRP 349
DE P+NAL+CGRA G+ RP
Sbjct: 484 DEYSAPRNALMCGRARGQHPRP 549
>gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_6_C08_A029 5', mRNA sequence
Length = 789
Score = 92.7 bits (196), Expect(2) = 2e-023
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = -1 / +1
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRV 439
+A++R T QVYPQSWTAI + LDN GMWN+RS WARQYLGQQFY++V
Sbjct: 505 DAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 648
Score = 36.3 bits (73), Expect(2) = 2e-023
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1 / +1
Query: 414 DENPIPKNALLCGRASGRRTRP 349
DE P+NAL+CGRA G+ RP
Sbjct: 667 DEYSAPRNALMCGRARGQHPRP 732
>gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_5_A12_A029 5', mRNA sequence
Length = 689
Score = 92.7 bits (196), Expect(2) = 2e-023
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = -1 / -3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRV 439
+A++R T QVYPQSWTAI + LDN GMWN+RS WARQYLGQQFY++V
Sbjct: 504 DAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 361
Score = 36.3 bits (73), Expect(2) = 2e-023
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1 / -3
Query: 414 DENPIPKNALLCGRASGRRTRP 349
DE P+NAL+CGRA G+ RP
Sbjct: 342 DEYSAPRNALMCGRARGQHPRP 277
>gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_45_E01_A029 3', mRNA sequence
Length = 679
Score = 92.7 bits (196), Expect(2) = 2e-023
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = -1 / +2
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRV 439
+A++R T QVYPQSWTAI + LDN GMWN+RS WARQYLGQQFY++V
Sbjct: 149 DAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 292
Score = 36.3 bits (73), Expect(2) = 2e-023
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1 / +2
Query: 414 DENPIPKNALLCGRASGRRTRP 349
DE P+NAL+CGRA G+ RP
Sbjct: 311 DEYSAPRNALMCGRARGQHPRP 376
>gb|CF663211.1|CF663211 RTCNT1_1_B03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_1_B03_A029 5', mRNA sequence
Length = 583
Score = 92.3 bits (195), Expect(2) = 2e-023
Identities = 34/47 (72%), Positives = 40/47 (85%)
Frame = -1 / -2
Query: 579 AIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRV 439
A++R T QVYPQSWTAI + LDN GMWN+RS WARQYLGQQFY++V
Sbjct: 582 AVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 442
Score = 36.3 bits (73), Expect(2) = 2e-023
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1 / -2
Query: 414 DENPIPKNALLCGRASGRRTRP 349
DE P+NAL+CGRA G+ RP
Sbjct: 423 DEYSAPRNALMCGRARGQHPRP 358
>gb|CF479761.1|CF479761 RTWW3_12_E10.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_E10_A022 3', mRNA sequence
Length = 530
Score = 92.3 bits (195), Expect(2) = 2e-023
Identities = 34/47 (72%), Positives = 40/47 (85%)
Frame = -1 / +3
Query: 579 AIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRV 439
A++R T QVYPQSWTAI + LDN GMWN+RS WARQYLGQQFY++V
Sbjct: 3 AVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 143
Score = 36.3 bits (73), Expect(2) = 2e-023
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1 / +3
Query: 414 DENPIPKNALLCGRASGRRTRP 349
DE P+NAL+CGRA G+ RP
Sbjct: 162 DEYSAPRNALMCGRARGQHPRP 227
>gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 5', mRNA sequence
Length = 804
Score = 106 bits (227), Expect = 1e-022
Identities = 40/52 (76%), Positives = 46/52 (88%)
Frame = -1 / +3
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPA 427
+ ++R T QVYP SWTAI +PLDNVG WN+RSE+WARQYLGQQFYLRVYSPA
Sbjct: 645 DTVSRCTTQVYPNSWTAIRVPLDNVGKWNLRSENWARQYLGQQFYLRVYSPA 800
>gb|BM367221.1|BM367221 NXLV_046_C05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_046_C05 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 462
Score = 102 bits (218), Expect = 2e-021
Identities = 40/66 (60%), Positives = 48/66 (72%)
Frame = -1 / +2
Query: 546 QSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALLCGRAS 367
+SWTA+ + DN GMWN+RSE WARQYLGQQ Y++V + S RDE IP NALLCG+A
Sbjct: 17 ESWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCGKAR 196
Query: 366 GRRTRP 349
GR P
Sbjct: 197 GRPRLP 214
>gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110F04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 521
Score = 100 bits (213), Expect = 9e-021
Identities = 39/65 (60%), Positives = 48/65 (73%)
Frame = -1 / +2
Query: 582 NAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 403
+A++R T QVYPQSWTA+ + DN GMWN+RSE WARQYLGQ Y++V + S RDE
Sbjct: 326 DAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQXTYIKVKTLVRSARDEYD 505
Query: 402 IPKNA 388
IP NA
Sbjct: 506 IPHNA 520
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 254,508,731
Number of Sequences: 355925
Number of extensions: 3069344
Number of successful extensions: 32798
Number of sequences better than 1.0e-020: 48
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7869667650
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)