TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521919.2.1
(2729 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stresse... 243 e-128
gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus adde... 193 5e-095
gb|DR088818.1|DR088818 RTAL1_4_F06.g1_A029 Roots plus added... 182 5e-085
dbj|BD236173.1| Materials and method for modification of pl... 294 2e-078
dbj|BD236171.1| Materials and method for modification of pl... 259 9e-068
dbj|BD236172.1| Materials and method for modification of pl... 116 8e-050
dbj|BD236175.1| Materials and method for modification of pl... 188 1e-046
dbj|BD236170.1| Materials and method for modification of pl... 172 2e-043
dbj|BD236176.1| Materials and method for modification of pl... 164 2e-039
gb|DR088754.1|DR088754 RTAL1_4_F06.b1_A029 Roots plus added... 140 5e-032
gb|CO364026.1|CO364026 RTK1_13_F04.b1_A029 Roots minus pota... 133 6e-030
gb|CO364190.1|CO364190 RTK1_14_F04.b1_A029 Roots minus pota... 130 4e-029
gb|DR019864.1|DR019864 STRS1_33_A09.b1_A034 Shoot tip pitch... 130 4e-029
gb|DR059847.1|DR059847 RTNIT1_20_D09.b1_A029 Roots minus ni... 125 1e-027
>gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_D06_A021 5', mRNA sequence
Length = 633
Score = 243 bits (526), Expect(2) = e-128
Identities = 93/111 (83%), Positives = 103/111 (92%)
Frame = -1 / +3
Query: 1346 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVTFTGNFNEYFGFATDVDAVVYLMLVNDLIH 1167
ARWWLEEYKFDGFRFDGVTSMMYTHHGLQV FTGN+ EYFGFATDVDAVVYLMLVND+IH
Sbjct: 3 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYAEYFGFATDVDAVVYLMLVNDMIH 182
Query: 1166 GLYPEAVTIGEDVSGMPTFALPVHDGGVGFDYRMHMAVADKWIDLLKQSDE 1014
GL+P+A+TIGEDVSGMPTF+ V DGGVGFDYR+HMAVADKWI+LL + +
Sbjct: 183 GLFPQAITIGEDVSGMPTFSRSVQDGGVGFDYRLHMAVADKWIELLSKKKD 335
Score = 238 bits (514), Expect(2) = e-128
Identities = 92/105 (87%), Positives = 98/105 (93%)
Frame = -1 / +3
Query: 1034 LLKQSDETWKMGDIVHTLTNRRWLEKCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALD 855
L K+ DE W+MGDIV TL+NRRW EKCV YAESHDQALVGDKTIAFWLMDKDMYDFMALD
Sbjct: 318 LSKKKDEDWQMGDIVFTLSNRRWSEKCVVYAESHDQALVGDKTIAFWLMDKDMYDFMALD 497
Query: 854 RPSTPTIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDF 720
+P+TP IDRGIALHKMIRL+TMGLGGEGYLNFMGNEFGHPEWIDF
Sbjct: 498 QPATPAIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDF 632
Score = 164 bits (353), Expect(2) = 3e-081
Identities = 78/100 (78%), Positives = 82/100 (82%)
Frame = +1 / -3
Query: 721 KSIHSGCPNSFPMKLR*PSPPKPIVISLIILCNAIPRSMVGVEGLSRAMKSYISLSINQN 900
KSIHSGCPNSFPMK R PSPPKPIV S IIL AIPRSM GV G S A+KSYISLS++Q
Sbjct: 631 KSIHSGCPNSFPMKFRYPSPPKPIVTSRIIL*RAIPRSMAGVAG*SSAIKSYISLSMSQK 452
Query: 901 AIVLSPTNA*S*LSA*VTHFSNHLLFVSVCTISPIFQVSS 1020
AIVLSPT A*S*LSA THFS+HLLF SV TISPI Q SS
Sbjct: 451 AIVLSPTRA*S*LSAYTTHFSDHLLFDSVNTISPICQSSS 332
Score = 160 bits (343), Expect(2) = 3e-081
Identities = 76/104 (73%), Positives = 80/104 (76%)
Frame = +1 / -3
Query: 1036 SIHLSATAICIR*SKPTPPS*TGRANVGIPLTSSPMVTASG*SP*IRSFTSIK*TTASTS 1215
SIHLSATAI R*S PTPPS T R VGIPLTSSP+V A G P*I S TSIK*TTASTS
Sbjct: 313 SIHLSATAIWSR*SNPTPPSCTEREKVGIPLTSSPIVMAWGNRP*IMSLTSIK*TTASTS 134
Query: 1216 VAKPKYSLKFPVNVTCNPW*VYIMEVTPSKRKPSNLYSSSHHLA 1347
VA PKYS FPVN TCNP VYI++VTPS PSNLYSS+H A
Sbjct: 133 VANPKYSA*FPVNATCNP*WVYIIDVTPSNLNPSNLYSSNHQRA 2
Score = 128 bits (275), Expect(2) = 4e-060
Identities = 61/105 (58%), Positives = 72/105 (68%)
Frame = +3 / -2
Query: 720 KIYPFRMSKLISHEIKIALSS*THCDKSNHLM*CYPTINGRS*RSIEGHEIIHILVHQPK 899
KI PF +SK ISHEI I ++*THCDKS+HL+ Y TI G S R I+ H+IIHILVH+PK
Sbjct: 632 KINPFWVSKFISHEI*IPFTT*THCDKSDHLVKSYSTIYGWSRRLIKCHKIIHILVHEPK 453
Query: 900 RNSLVAD*CLIMTFSISYTLL*PPPICQCVHNITHLPSFITLLEK 1034
L+ D LIMT I YT L PP I C +NITHLP + LL K
Sbjct: 452 GYCLITDKSLIMTLCIYYTFLRPPSI**CKYNITHLPILVLLL*K 318
Score = 125 bits (268), Expect(2) = 4e-056
Identities = 53/104 (50%), Positives = 69/104 (66%)
Frame = -3 / +2
Query: 1347 C*MVARGI*V*WFPF*WCDLHDVHSPRITSNIYGELQ*VFWLCHRCRCSGLLDAGK*SNS 1168
C +V G+*+*W *WC+++DVH IT +I+ EL *V W+C+ CRC GL DAG * +S
Sbjct: 2 CPLVVGGV*I*WV*V*WCNIYDVHPSWITGSIHWELC*VLWICY*CRCCGLFDAG**HDS 181
Query: 1167 WTLS*GCNHW*RC*WNAYICPSCSRWWGRF*LSDAYGCG*QMD* 1036
W++S G N+W RC W A + C+RW *LS YG *QMD*
Sbjct: 182 WSISPGHNNWRRCEWYANLFSFCTRWRSGI*LSTPYGSS*QMD* 313
Score = 125 bits (267), Expect(2) = 4e-060
Identities = 52/109 (47%), Positives = 76/109 (69%)
Frame = +3 / -2
Query: 1017 ITLLEKVNPFVSHSHMHPIVKTYPTIVNRKGKCRHSTNIFTNGYSLRIKSMN*IIYQHQV 1196
+ L ++ NPFVS+ HM I+K++ I+ R K H+T+IF+N Y L +MN +I QHQ+
Sbjct: 332 LLL*KQFNPFVSYCHMESIIKSHSAILYRTRKGWHTTHIFSNCYGLGK*TMNHVINQHQI 153
Query: 1197 NHCIYIGGKAKILIEVPRKCYL*SVVSVHHGGHTIKTETIKLIFLEPPS 1343
NH IYI K+K+L +P +CYL*S++ VHH +TIK + IK I L+PP+
Sbjct: 152 NHSIYISSKSKVLSIIPSECYL*SMMGVHHRCYTIKPKPIKFILLQPPA 6
Score = 115 bits (245), Expect(2) = 4e-056
Identities = 58/105 (55%), Positives = 69/105 (65%)
Frame = -2 / +1
Query: 1033 FSSKVMKLGRWVILCTH*QIGGG*RSV*LMLKVMIKH*SATRLLRFG*WTRICMISWPSI 854
F + ++G+WVIL H QI GG R+V* M +VMI+ S R FG WTRICMI W I
Sbjct: 319 FQRRRTRIGKWVILYLHYQIEGGLRNV*YMQRVMIRLLSVIRQ*PFGSWTRICMILWHLI 498
Query: 853 DLQLLPLIVG*HYIR*LDLSQWV*EERAILISWEMSLDILNG*IF 719
L+L P IV * + R* DLSQWV* + I ISWEM+LD NG IF
Sbjct: 499 SLRLQP*IVE*LFTR*SDLSQWV*VVKGI*ISWEMNLDTQNGLIF 633
Score = 101 bits (216), Expect(2) = 8e-040
Identities = 51/97 (52%), Positives = 65/97 (67%)
Frame = -3 / +2
Query: 1011 LEDG*YCAHTDK*EVVREVCNLC*KS*SSISRRQDYCVLVDGQGYV*FHGPR*TFNSYH* 832
L +G*YC +T K*+VV E+C++C +S*S R D +L GQGYV*F+G +S H
Sbjct: 341 LANG*YCIYTIK*KVV*EMCSICRES*SGSCR**DNSLLAHGQGYV*FYGT*SACDSSHR 520
Query: 831 SWDSIT*DD*TYHNGFRRRGLS*FHGK*VWTS*MDRF 721
SW+S + DD T HNGFR +S FHGK*+WT MD F
Sbjct: 521 SWNSSSQDDPTCHNGFRW*RVSKFHGK*IWTPRMD*F 631
Score = 96.8 bits (205), Expect(2) = 2e-034
Identities = 50/104 (48%), Positives = 58/104 (55%)
Frame = +2 / -1
Query: 1037 QSICQPQPYASDSQNLPHHREQEGQM*AFH*HLHQWLQPQDKVHELDHLPASSKPLHLHR 1216
QSICQ PY D+Q H Q + A+H HL Q L P + HE H PAS+KP HLH+
Sbjct: 312 QSICQLLPYGVDNQIPLRHLVQNEKRLAYHSHLLQLLWPGEIDHESCH*PASNKPQHLHQ 133
Query: 1217 WQSQNTH*SSP*MLLVIRGECTSWRSHHQNGNHQTYIPRATI*H 1348
Q Q+T +S *ML VI CTS HHQ HQ Y P T H
Sbjct: 132 *QIQSTQHNSQ*MLPVIHDGCTS*MLHHQT*THQIYTPPTTSGH 1
Score = 84.5 bits (178), Expect(2) = 8e-040
Identities = 51/101 (50%), Positives = 57/101 (56%)
Frame = -2 / +1
Query: 1339 GGSRNISLMVSVLMV*PP*CTLTTDYK*HLRGTSMSILALPPM*MQWFT*CW*MI*FMDF 1160
GG R+I+LM LMV* *CT DY+*H G +S L L M*M WF *CW M *FM +
Sbjct: 10 GGWRSINLMGLGLMV*HL*CTPIMDYR*HSLGIMLSTLDLLLM*MLWFI*CWLMT*FMVY 189
Query: 1159 ILRL*PLVKMLVECLHLPFLFTMVG*VLTIGCIWLWLTNGL 1037
R * L KM V C L+ M L I IW LTNGL
Sbjct: 190 FPRP*QLEKM*VVCQPFLVLYKMAEWDLIIDSIWQ*LTNGL 312
Score = 71.6 bits (150), Expect(2) = 2e-034
Identities = 35/66 (53%), Positives = 37/66 (56%)
Frame = +2 / -1
Query: 806 SSYVMLSHDQW*ELKVYRGP*NHTYPCPSTKTQ*SCRRLMLDHDFQHKLHTSLTTSYLSV 985
SS L HD W E + + P*NHTYPCP K S R DHD H LH S TT YL V
Sbjct: 546 SSCEELFHDLWLESQADQVP*NHTYPCP*AKRLLSYHRQEPDHDSLHILHISQTTFYLIV 367
Query: 986 CAQYHP 1003
QYHP
Sbjct: 366 *IQYHP 349
>gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_11_E09_A029 5', mRNA sequence
Length = 700
Score = 193 bits (417), Expect(3) = 5e-095
Identities = 77/107 (71%), Positives = 87/107 (81%)
Frame = -1 / +1
Query: 1034 LLKQSDETWKMGDIVHTLTNRRWLEKCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALD 855
L + DE W M +IV TLTNRR+ EKCV YAESHDQ++VGDKTIAF LMDK+MY M+
Sbjct: 151 LKHKRDEQWSMQEIVLTLTNRRYTEKCVAYAESHDQSIVGDKTIAFTLMDKEMYSAMSCL 330
Query: 854 RPSTPTIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPR 714
+ +P +DRGIALHKMI ITM LGGEGYLNFMGNEFGHPEWIDFPR
Sbjct: 331 QSPSPVVDRGIALHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPR 471
Score = 129 bits (277), Expect(3) = 2e-050
Identities = 68/102 (66%), Positives = 72/102 (70%)
Frame = +1 / -3
Query: 715 LGKSIHSGCPNSFPMKLR*PSPPKPIVISLIILCNAIPRSMVGVEGLSRAMKSYISLSIN 894
LGKSIHSG PNSFP+KLR*PSPP IV+ IIL +AIPRS G M YISLSI
Sbjct: 470 LGKSIHSG*PNSFPIKLR*PSPPSAIVMK*IIL*SAIPRSTTGEGDCKHDMAEYISLSIK 291
Query: 895 QNAIVLSPTNA*S*LSA*VTHFSNHLLFVSVCTISPIFQVSS 1020
NAIVLSPT *S*LSA THFS +LL VSV TIS I SS
Sbjct: 290 VNAIVLSPTID*S*LSAYATHFSVYLLLVSVSTISCIDHCSS 165
Score = 112 bits (239), Expect(3) = 5e-095
Identities = 43/74 (58%), Positives = 57/74 (77%)
Frame = -1 / +1
Query: 677 GNNNSYDKCRRRFDLGDADYLRYHGMQEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVI 498
GN SY+KCRR+++L D D+LRY M FD+AM L++K+ F+ S Q +S +EEDKVI
Sbjct: 475 GNGWSYEKCRRQWNLVDTDHLRYKFMNNFDKAMNELDEKFHFLASSKQIVSSANEEDKVI 654
Query: 497 VFEKGDLVFVFNFH 456
VFE+GD+VFVFNFH
Sbjct: 655 VFERGDIVFVFNFH 696
Score = 83.5 bits (176), Expect(3) = 5e-095
Identities = 31/50 (62%), Positives = 38/50 (76%)
Frame = -1 / +1
Query: 1175 LIHGLYPEAVTIGEDVSGMPTFALPVHDGGVGFDYRMHMAVADKWIDLLK 1026
LI +YP+A I EDVSGMPT PV +GG+GFDYR+ MA+ DKWI+ LK
Sbjct: 7 LIRNIYPDATVIAEDVSGMPTLGRPVSEGGLGFDYRLAMAIPDKWIEYLK 156
Score = 70.7 bits (148), Expect(4) = 8e-030
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +3 / -2
Query: 717 WKIYPFRMSKLISHEIKIALSS*THCDKSNHLM*CYPTIN 836
WK+ PFRM+KLISH+IKIAL++* HC + NHL+ C PTIN
Sbjct: 468 WKVNPFRMTKLISHKIKIALAT*CHCYEMNHLVKCNPTIN 349
Score = 65.7 bits (137), Expect(3) = 2e-050
Identities = 31/49 (63%), Positives = 34/49 (69%)
Frame = +1 / -3
Query: 1015 SSLCLRRSIHLSATAICIR*SKPTPPS*TGRANVGIPLTSSPMVTASG* 1161
S LC + SIHLS AI R*S P+PPS TGR VGIP TSS + ASG*
Sbjct: 167 SRLCFKYSIHLSGIAIARR*SNPSPPSETGRPKVGIPETSSAITVASG* 21
Score = 52.8 bits (109), Expect(4) = 8e-030
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +3 / -2
Query: 864 HEIIHILVHQPKRNSLVAD*CLIMTFSISYTLL*PPPICQCVHNITHLPSFITLLEKV 1037
H +H+LVH + NSLV + LIMTF I T L P+ QC H H P FI+ + ++
Sbjct: 321 HGRVHLLVH*GECNSLVTNN*LIMTFCICNTFLSISPVGQCEHYFLHRPLFISFMLQI 148
Score = 44.6 bits (91), Expect(3) = 2e-050
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3 / -2
Query: 468 HKYQISLFEHNHLILLMFPGNILVIRCHEFIFXXXXXXXXXXXXXTMIPKIVCITQVKSS 647
+K+ I+ F++NHLI + N L+ RC E F ++ +++C+ V S
Sbjct: 684 NKHYIASFKNNHLIFFICTANYLL*RCEEMKFLIKLIHGFVKIIHKLVSQVICVH*VPLS 505
Query: 648 TTFVITVVI 674
+TF I I
Sbjct: 504 STFFIAPTI 478
Score = 37.3 bits (75), Expect(4) = 8e-030
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +1 / -3
Query: 457 WKLNTNTKSPFSNTITLSSS 516
WKL TNT SP S TITLSSS
Sbjct: 695 WKLKTNTISPRSKTITLSSS 636
Score = 36.3 bits (73), Expect(4) = 8e-030
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3 / -2
Query: 1023 LLEKVNPFVSHSHMHPIVKTYPTIVNRKGKCRHSTNIFTNGYSLRI 1160
+L+ NP V +SH I+K+ T NR H+ NIF N +RI
Sbjct: 159 MLQIFNPLVWNSHC*AIIKSKSTFRNRPT*SWHTRNIFRNNGCIRI 22
>gb|DR088818.1|DR088818 RTAL1_4_F06.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_4_F06_A029 5', mRNA sequence
Length = 638
Score = 182 bits (391), Expect(2) = 5e-085
Identities = 75/107 (70%), Positives = 82/107 (76%)
Frame = -1 / +2
Query: 1034 LLKQSDETWKMGDIVHTLTNRRWLEKCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALD 855
L + D+ W MG+IV TL NRR LEK V YAESHDQALVGDKTIAFWLMDK+MY M+
Sbjct: 284 LRHKQDDEWDMGNIVQTLVNRRHLEKSVAYAESHDQALVGDKTIAFWLMDKEMYTNMSDL 463
Query: 854 RPSTPTIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPR 714
TP I RGIALHKMIRL+ LGGE YLNF G EFGHPEW+DFPR
Sbjct: 464 TEMTPIISRGIALHKMIRLLVHALGGEAYLNFEGYEFGHPEWLDFPR 604
Score = 155 bits (333), Expect(2) = 5e-085
Identities = 59/100 (59%), Positives = 72/100 (72%)
Frame = -1 / +2
Query: 1313 GFRFDGVTSMMYTHHGLQVTFTGNFNEYFGFATDVDAVVYLMLVNDLIHGLYPEAVTIGE 1134
GFRFDGVTSMMY HHG+ F+G ++EYF D++ VVYLML ND +H LYP +TI E
Sbjct: 2 GFRFDGVTSMMYLHHGIGTGFSGGYHEYFEDKVDLEGVVYLMLANDAMHELYPHCITIAE 181
Query: 1133 DVSGMPTFALPVHDGGVGFDYRMHMAVADKWIDLLKQSDE 1014
DVSGMP +P +GGVGFDYR+ MAV D WI LL+ +
Sbjct: 182 DVSGMPLLCIPTSNGGVGFDYRLSMAVPDMWIKLLRHKQD 301
Score = 117 bits (251), Expect(2) = 2e-046
Identities = 63/101 (62%), Positives = 68/101 (67%)
Frame = +1 / -3
Query: 718 GKSIHSGCPNSFPMKLR*PSPPKPIVISLIILCNAIPRSMVGVEGLSRAMKSYISLSINQ 897
GKS HSG PNS+P KLR* SPP SLIIL +AIPR M+GV + M YISLSINQ
Sbjct: 600 GKSSHSG*PNSYPSKLR*ASPPSA*TRSLIIL*SAIPRDMIGVISVKSDMFVYISLSINQ 421
Query: 898 NAIVLSPTNA*S*LSA*VTHFSNHLLFVSVCTISPIFQVSS 1020
NAIVLSPT A S*LSA T FS L F V TI P+ SS
Sbjct: 420 NAIVLSPTRAWS*LSAYATLFSRCLRFTRV*TILPMSHSSS 298
Score = 90.9 bits (192), Expect(2) = 2e-046
Identities = 49/100 (49%), Positives = 56/100 (56%)
Frame = +1 / -3
Query: 1015 SSLCLRRSIHLSATAICIR*SKPTPPS*TGRANVGIPLTSSPMVTASG*SP*IRSFTSIK 1194
S LCL IH+S TA+ R*SKPTPP G GIP TSS +V G + + SF S++
Sbjct: 300 SCLCLSNLIHISGTAMDKR*SKPTPPLEVGMQRSGIPETSSAIVMQWGYNSCMASFASMR 121
Query: 1195 *TTASTSVAKPKYSLKFPVNVTCNPW*VYIMEVTPSKRKP 1314
TT S S KYS P PW YIM VTPS RKP
Sbjct: 120 YTTPSKSTLSSKYSW*PPEKPVPMPWWRYIMLVTPSNRKP 1
Score = 85.8 bits (181), Expect(2) = 9e-026
Identities = 41/105 (39%), Positives = 64/105 (60%)
Frame = +3 / -2
Query: 720 KIYPFRMSKLISHEIKIALSS*THCDKSNHLM*CYPTINGRS*RSIEGHEIIHILVHQPK 899
K+ P ++KLIS EI+I+ S+ +K +HL+ C T R S GH +H+ VHQP+
Sbjct: 598 KVEPLGVTKLISFEIEISFSTQCVNEKPDHLVKCNTTRYDRRHLSQIGHVRVHLFVHQPE 419
Query: 900 RNSLVAD*CLIMTFSISYTLL*PPPICQCVHNITHLPSFITLLEK 1034
R+ LV D L+MT + LL* P I + +++ITH+P + L+ +
Sbjct: 418 RDRLVTDKGLVMTLGVCNALL*VPSIYESLNDITHVPFIVLLVSE 284
Score = 53.3 bits (110), Expect(2) = 9e-026
Identities = 26/94 (27%), Positives = 49/94 (52%)
Frame = +3 / -2
Query: 1029 EKVNPFVSHSHMHPIVKTYPTIVNRKGKCRHSTNIFTNGYSLRIKSMN*IIYQHQVNHCI 1208
E ++P + SH IV+ +P+I + RH+ +I N ++ + ++ I+ +H+V
Sbjct: 286 E*LDPHIRDSHG*TIVEAHPSIRGGDAEKRHTGDILGNRDAMGV*LVHGIVCEHEVYDTF 107
Query: 1209 YIGGKAKILIEVPRKCYL*SVVSVHHGGHTIKTE 1310
+ ++ + PRK +VV VHH T+K E
Sbjct: 106 QVDFILEVFVVTPRKASADAVVEVHHARDTVKPE 5
>dbj|BD236173.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 476
Score = 294 bits (637), Expect = 2e-078
Identities = 110/158 (69%), Positives = 131/158 (82%)
Frame = -1 / +3
Query: 1742 EPKINTYVNFRDEVLPRIKKLGYNAVQIMAIQEHSYYGSFGYHVTNFFAPSSRFGTPEEL 1563
EP++ TY F LPRIKKLGYN +Q+MA+ EH+YY SFGY VT+FFA SSR+GTPEEL
Sbjct: 3 EPRVGTYKEFTLNTLPRIKKLGYNVIQLMAVMEHAYYASFGYQVTSFFAASSRYGTPEEL 182
Query: 1562 KSLIDRAHELGLLVLMDVVHSHASSNTLDGLNGFDGTDTHYFHSGPRGHHWMWDSRLFNY 1383
K LID AH +G+ VL+DVVHSHA N LDGLN FDGTD YFH GP+G+H +WDSRLFNY
Sbjct: 183 KELIDTAHSMGITVLLDVVHSHACKNVLDGLNQFDGTDHQYFHGGPKGYHDLWDSRLFNY 362
Query: 1382 GNWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHH 1269
++EVLRFL+SN R+W+EEY+FDGFRFDGVTSM+Y HH
Sbjct: 363 SHYEVLRFLMSNLRFWMEEYQFDGFRFDGVTSMLYLHH 476
Score = 125 bits (267), Expect = 2e-027
Identities = 73/141 (51%), Positives = 81/141 (57%)
Frame = +1 / -2
Query: 1279 YIMEVTPSKRKPSNLYSSSHHLALERRNLKTSQFP*LNRRESHIQ*WPRGPL*K*CVSVP 1458
Y + VTPSKRKPSN YSS L+ R +TS *L RR SH +P GP K SVP
Sbjct: 466 YNILVTPSKRKPSN*YSSIQKRRLDIRKRRTS**E*LKRRLSHKSWYPFGPPWKYWWSVP 287
Query: 1459 SKPFNPSRVLLDA*L*TTSMRTSKPSSCALSIKDFNSSGVPKRLLGAKKLVTWYPKLP*Y 1638
S F PS L A* TTS T P CA+SI +SSGVP R L AKKLVT PK *
Sbjct: 286 SNWFKPSSTFLQA*ECTTSSNTVMPIECAVSISSLSSSGVPYRELAAKKLVT**PKEA** 107
Query: 1639 ECSWIAIICTALYPSFFILGR 1701
CS AI LYP+F + GR
Sbjct: 106 ACSITAISWITLYPNFLMRGR 44
>dbj|BD236171.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 375
Score = 259 bits (559), Expect = 9e-068
Identities = 99/124 (79%), Positives = 112/124 (90%)
Frame = -1 / +3
Query: 2066 DFNNWDPNADRMSKNEFGVWEIFLPNNADGTSPIPHGSRVKVRMDTPSGIKDSIPAWIKY 1887
DFNNW+PNAD M+KNEFGVWEIFLPNNADG+ PIPHGSRVK+ MDT SG KD+IPAWIK+
Sbjct: 3 DFNNWNPNADVMTKNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTISGPKDAIPAWIKF 182
Query: 1886 SVQAPGEIPYDGIYYDPPEEVKYVFRHAQPKRPKSLRIYETHVGMSSPEPKINTYVNFRD 1707
+VQAPGEIPY+GIYYDPP E KY F++ +PK+PKSLRIYE HVGMSS EPKINTYV FRD
Sbjct: 183 AVQAPGEIPYNGIYYDPPPEDKYEFKYPRPKQPKSLRIYEAHVGMSSTEPKINTYVEFRD 362
Query: 1706 EVLP 1695
+VLP
Sbjct: 363 DVLP 374
Score = 103 bits (219), Expect = 7e-021
Identities = 54/124 (43%), Positives = 73/124 (58%)
Frame = +3 / -2
Query: 1695 WEDFIPKVYICVYLRFRATHSDMCFIYPQ*FWSFRLRMPEHILYLFRRIIINPIIWYFSW 1874
W IP++ IC+ FRA H++M FIY Q*F R+ + I L R III I+W +
Sbjct: 374 W*YIIPELNICINFGFRAAHANMRFIYSQ*FGLLWSRILKFIFILRRGIIIYSIVWNLTR 195
Query: 1875 GLH*VLDPGWN*ILYP*WSIHSHLYTRSMRNR*CTICIVRQKNFPNTKLIFAHTICIWIP 2054
L+ L+P + +L+ IH +L TRSM N TICIV K P +KL+ +H I I IP
Sbjct: 194 SLNSKLNPSRDCVLWSRNCIHMYLNTRSMGNWWRTICIVW*KYLPYSKLVLSHNISIGIP 15
Query: 2055 VVEV 2066
VVE+
Sbjct: 14 VVEI 3
Score = 88.1 bits (186), Expect(2) = 2e-029
Identities = 42/62 (67%), Positives = 45/62 (72%)
Frame = +1 / -3
Query: 1882 TEYLIQAGIESFIPDGVSILTFTRDP*GIGDVPSALLGRKISQTPNSFLLIRSAFGSQLL 2061
T LIQAGI SF P+ VSI TRDP GIG PSAL G+ IS TPNSFL+I SA G QLL
Sbjct: 187 TANLIQAGIASFGPEIVSICILTRDPWGIGGEPSALFGKNISHTPNSFLVITSALGFQLL 8
Query: 2062 KS 2067
KS
Sbjct: 7 KS 2
Score = 63.4 bits (132), Expect(2) = 2e-029
Identities = 27/44 (61%), Positives = 30/44 (68%)
Frame = +1 / -3
Query: 1696 GRTSSLKFTYVFIFGSGLLIPTCVSYIRNDFGRLGCACLNTYFT 1827
G TSSL TYV I GS LL+PTC SYIRND G G LN+Y +
Sbjct: 373 GSTSSLNSTYVLILGSVLLMPTCASYIRNDLGCFGRGYLNSYLS 242
>dbj|BD236172.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 408
Score = 116 bits (248), Expect(2) = 8e-050
Identities = 45/79 (56%), Positives = 60/79 (75%)
Frame = -1 / +3
Query: 677 GNNNSYDKCRRRFDLGDADYLRYHGMQEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVI 498
GN SY+KCRR+++L D D+LRY M FD+AM L++K+ F+ S Q +S +EEDKVI
Sbjct: 165 GNGWSYEKCRRQWNLVDTDHLRYKFMNNFDKAMNELDEKFHFLASSKQIVSIANEEDKVI 344
Query: 497 VFEKGDLVFVFNFHCNNSY 441
VFE+GD+VFVFNFH N+Y
Sbjct: 345 VFERGDIVFVFNFHPKNTY 401
Score = 103 bits (219), Expect(2) = 8e-050
Identities = 38/44 (86%), Positives = 40/44 (90%)
Frame = -1 / +3
Query: 845 TPTIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPR 714
+P +DRGIALHKMI ITM LGGEGYLNFMGNEFGHPEWIDFPR
Sbjct: 30 SPVVDRGIALHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPR 161
>dbj|BD236175.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 258
Score = 188 bits (406), Expect = 1e-046
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = -1 / +2
Query: 1292 TSMMYTHHGLQVTFTGNFNEYFGFATDVDAVVYLMLVNDLIHGLYPEAVTIGEDVSGMPT 1113
TSMMYTHHGLQV FTGN+ EYFGFATDVDAVVYLMLVND+IHGL+P+A+TIGEDVSGMPT
Sbjct: 2 TSMMYTHHGLQVAFTGNYAEYFGFATDVDAVVYLMLVNDMIHGLFPQAITIGEDVSGMPT 181
Query: 1112 FALPVHDGGVGFDYRMHMAVADKWI 1038
F+ V DGGVGFDYR+HMAVADKWI
Sbjct: 182 FSRSVQDGGVGFDYRLHMAVADKWI 256
Score = 132 bits (282), Expect = 2e-029
Identities = 64/86 (74%), Positives = 67/86 (77%)
Frame = +1 / -1
Query: 1036 SIHLSATAICIR*SKPTPPS*TGRANVGIPLTSSPMVTASG*SP*IRSFTSIK*TTASTS 1215
SIHLSATAI R*S PTPPS T R VGIPLTSSP+V A G P*I S TSIK*TTASTS
Sbjct: 258 SIHLSATAIWSR*SNPTPPSCTEREKVGIPLTSSPIVMAWGNRP*IMSLTSIK*TTASTS 79
Query: 1216 VAKPKYSLKFPVNVTCNPW*VYIMEV 1293
VA PKYS FPVN TCNP VYI++V
Sbjct: 78 VANPKYSA*FPVNATCNP*WVYIIDV 1
Score = 106 bits (227), Expect = 6e-022
Identities = 45/86 (52%), Positives = 58/86 (67%)
Frame = -3 / +1
Query: 1293 DLHDVHSPRITSNIYGELQ*VFWLCHRCRCSGLLDAGK*SNSWTLS*GCNHW*RC*WNAY 1114
+++DVH RIT +I+ EL *V W+C+ CRC GL DAG * +SW++S G N+W RC W A
Sbjct: 1 NIYDVHPSRITGSIHWELC*VLWICY*CRCCGLFDAG**HDSWSISPGHNNWRRCEWYAN 180
Query: 1113 ICPSCSRWWGRF*LSDAYGCG*QMD* 1036
+ C+RW *LS YG *QMD*
Sbjct: 181 LFSFCTRWRSGI*LSTPYGSS*QMD* 258
Score = 105 bits (224), Expect = 2e-021
Identities = 43/83 (51%), Positives = 59/83 (71%)
Frame = +3 / -3
Query: 1038 NPFVSHSHMHPIVKTYPTIVNRKGKCRHSTNIFTNGYSLRIKSMN*IIYQHQVNHCIYIG 1217
NPFVS+ HM I+K++ I+ R K H+T+IF+N Y L +MN +I QHQ+NH IYI
Sbjct: 256 NPFVSYCHMESIIKSHSAILYRTRKGWHTTHIFSNCYGLGK*TMNHVINQHQINHSIYIS 77
Query: 1218 GKAKILIEVPRKCYL*SVVSVHH 1286
K+K+L +P +CYL*SV+ VHH
Sbjct: 76 SKSKVLSIIPSECYL*SVMGVHH 8
>dbj|BD236170.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 451
Score = 172 bits (371), Expect(2) = 2e-043
Identities = 64/97 (65%), Positives = 81/97 (83%)
Frame = -1 / +3
Query: 2321 NRVRVVPPPSDGQKIFQIDPMLQGYKYHLEYRYSLYRRIRSDIDEHEGGLEAFSRSYEKF 2142
+R +VVPPP GQ+I++IDP+L Y+ HL+YR++ Y++ R ID++EGGLEAFSR YEK
Sbjct: 135 DRPKVVPPPGSGQRIYEIDPLLNNYREHLDYRFAQYKKTRELIDKYEGGLEAFSRGYEKM 314
Query: 2141 GFNRSAEGITYREWAPGAFSAALVGDFNNWDPNADRM 2031
GFNRSA GITYREWAPGA A+L+GDFNNW+PNAD M
Sbjct: 315 GFNRSAAGITYREWAPGAKGASLIGDFNNWNPNADVM 425
Score = 25.4 bits (49), Expect(2) = 2e-043
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -1 / +2
Query: 2030 SKNEFGVWE 2004
+KNEFGVWE
Sbjct: 425 AKNEFGVWE 451
>dbj|BD236176.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 349
Score = 164 bits (353), Expect = 2e-039
Identities = 60/92 (65%), Positives = 77/92 (83%)
Frame = -1 / +1
Query: 2321 NRVRVVPPPSDGQKIFQIDPMLQGYKYHLEYRYSLYRRIRSDIDEHEGGLEAFSRSYEKF 2142
+R +VVPPP GQ+I++IDP+L Y+ HL+YR++ Y++ R ID++EGGLEAFSR YEK
Sbjct: 61 DRPKVVPPPGSGQRIYEIDPLLNNYREHLDYRFAQYKKTRELIDKYEGGLEAFSRGYEKM 240
Query: 2141 GFNRSAEGITYREWAPGAFSAALVGDFNNWDP 2046
GFNRSA GITYREWAPGA A+L+GDFNNW+P
Sbjct: 241 GFNRSAAGITYREWAPGAKGASLIGDFNNWNP 336
>gb|DR088754.1|DR088754 RTAL1_4_F06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_4_F06_A029 3', mRNA sequence
Length = 571
Score = 140 bits (300), Expect = 5e-032
Identities = 60/140 (42%), Positives = 84/140 (60%)
Frame = -1 / +1
Query: 677 GNNNSYDKCRRRFDLGDADYLRYHGMQEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVI 498
GNNNSY RR++++ D LRY + FD M + E+KY ++ + Y+S K+E DKVI
Sbjct: 10 GNNNSYHYARRQWNVVDDAVLRYRYLNGFDSEMNNTEEKYGWLAAPQAYVSLKNEVDKVI 189
Query: 497 VFEKGDLVFVFNFHCNNSYFDYRIGCRKPGVYKVVLDSDAGLFGGFSRIHHAAEHFTADC 318
VFE+ L+FVFNFH S+ DYRIG + G Y V+L +D FGGF I + ++ T
Sbjct: 190 VFERAGLLFVFNFHPTKSFSDYRIGVEEAGEYHVILSTDDKRFGGFENIDTSVKYKTTPL 369
Query: 317 SHDNRPYSFSVYTPSRTCVV 258
+ R VY PSRT ++
Sbjct: 370 EWNGRKNWTQVYIPSRTAMI 429
>gb|CO364026.1|CO364026 RTK1_13_F04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_F04_A029 3', mRNA sequence
Length = 852
Score = 133 bits (285), Expect = 6e-030
Identities = 51/90 (56%), Positives = 66/90 (73%)
Frame = -1 / +3
Query: 593 FDQAMQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGCRK 414
FD+AM L++K+ F+ S Q +S +EEDKVIVFE+GD+VFVFNFH N+Y Y+IGC
Sbjct: 3 FDKAMNELDEKFHFLASSKQIVSSANEEDKVIVFERGDIVFVFNFHPKNTYSGYKIGCDM 182
Query: 413 PGVYKVVLDSDAGLFGGFSRIHHAAEHFTA 324
PG Y+V LDSDA FGG R+ H +HFT+
Sbjct: 183 PGKYRVALDSDALEFGGHGRVSHDVDHFTS 272
>gb|CO364190.1|CO364190 RTK1_14_F04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_F04_A029 3', mRNA sequence
Length = 847
Score = 130 bits (279), Expect = 4e-029
Identities = 50/89 (56%), Positives = 65/89 (73%)
Frame = -1 / +1
Query: 590 DQAMQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGCRKP 411
D+AM L++K+ F+ S Q +S +EEDKVIVFE+GD+VFVFNFH N+Y Y+IGC P
Sbjct: 1 DKAMNELDEKFHFLASSKQIVSSANEEDKVIVFERGDIVFVFNFHPKNTYSGYKIGCDMP 180
Query: 410 GVYKVVLDSDAGLFGGFSRIHHAAEHFTA 324
G Y+V LDSDA FGG R+ H +HFT+
Sbjct: 181 GKYRVALDSDALEFGGHGRVSHDVDHFTS 267
>gb|DR019864.1|DR019864 STRS1_33_A09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_A09_A034 3', mRNA sequence
Length = 867
Score = 130 bits (279), Expect = 4e-029
Identities = 50/89 (56%), Positives = 65/89 (73%)
Frame = -1 / +1
Query: 590 DQAMQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGCRKP 411
D+AM L++K+ F+ S Q +S +EEDKVIVFE+GD+VFVFNFH N+Y Y+IGC P
Sbjct: 1 DKAMNELDEKFHFLASSKQIVSSANEEDKVIVFERGDIVFVFNFHPKNTYSGYKIGCDMP 180
Query: 410 GVYKVVLDSDAGLFGGFSRIHHAAEHFTA 324
G Y+V LDSDA FGG R+ H +HFT+
Sbjct: 181 GKYRVALDSDALEFGGHGRVSHDVDHFTS 267
>gb|DR059847.1|DR059847 RTNIT1_20_D09.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_20_D09_A029 3', mRNA sequence
Length = 726
Score = 125 bits (268), Expect = 1e-027
Identities = 46/107 (42%), Positives = 66/107 (61%)
Frame = -1 / -2
Query: 2312 RVVPPPSDGQKIFQIDPMLQGYKYHLEYRYSLYRRIRSDIDEHEGGLEAFSRSYEKFGFN 2133
R + + + +DP L +K H +YRY+ Y + + I+++EG LE FS Y KFGFN
Sbjct: 323 RTIEDELENLAVLTVDPSLASHKAHFQYRYTKYLQQKQAIEKYEGSLEDFSEGYLKFGFN 144
Query: 2132 RSAEGITYREWAPGAFSAALVGDFNNWDPNADRMSKNEFGVWEIFLP 1992
R I YREWAP A A L+GDFN W+ +M K++FGVW +++P
Sbjct: 143 REGNKIVYREWAPAAKEAQLIGDFNAWNGMGHQMEKDKFGVWTVYIP 3
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,630,017,464
Number of Sequences: 355925
Number of extensions: 27337003
Number of successful extensions: 127747
Number of sequences better than 1.0e-020: 16
length of database: 72,425,745
effective HSP length: 56
effective length of database: 52,493,945
effective search space used: 44777335085
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)