TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521825.2.1
(2812 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus adde... 471 e-131
gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stresse... 367 e-100
gb|DR088818.1|DR088818 RTAL1_4_F06.g1_A029 Roots plus added... 352 1e-095
dbj|BD236172.1| Materials and method for modification of pl... 281 2e-074
dbj|BD236173.1| Materials and method for modification of pl... 160 2e-071
gb|CO364026.1|CO364026 RTK1_13_F04.b1_A029 Roots minus pota... 215 2e-054
gb|CO364190.1|CO364190 RTK1_14_F04.b1_A029 Roots minus pota... 212 1e-053
gb|DR019864.1|DR019864 STRS1_33_A09.b1_A034 Shoot tip pitch... 212 1e-053
gb|DR059847.1|DR059847 RTNIT1_20_D09.b1_A029 Roots minus ni... 157 4e-037
dbj|BD236175.1| Materials and method for modification of pl... 139 1e-031
gb|DR088754.1|DR088754 RTAL1_4_F06.b1_A029 Roots plus added... 131 2e-029
dbj|BD236171.1| Materials and method for modification of pl... 93 2e-024
dbj|BD236174.1| Materials and method for modification of pl... 97 9e-023
>gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_11_E09_A029 5', mRNA sequence
Length = 700
Score = 471 bits (1022), Expect = e-131
Identities = 185/231 (80%), Positives = 207/231 (89%)
Frame = -2 / +1
Query: 1431 LMHKLLPEATVVAEDVSGMPVLCRPVDEGGVGFDYRLAMAIPDRWIDYLKNKDDSEWSMG 1252
L+ + P+ATV+AEDVSGMP L RPV EGG+GFDYRLAMAIPD+WI+YLK+K D +WSM
Sbjct: 7 LIRNIYPDATVIAEDVSGMPTLGRPVSEGGLGFDYRLAMAIPDKWIEYLKHKRDEQWSMQ 186
Query: 1251 EIAHTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTIDRGIA 1072
EI TLTNRRYTEKC+AYAESHDQSIVGDKTIAF LMDKEMY+ MS LQ SP +DRGIA
Sbjct: 187 EIVLTLTNRRYTEKCVAYAESHDQSIVGDKTIAFTLMDKEMYSAMSCLQSPSPVVDRGIA 366
Query: 1071 LQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYK 892
L KMIHFITMALGG+GYLNFMGNEFGHPEWIDFPREGN WSY+KCRRQW+LVDTDHLRYK
Sbjct: 367 LHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYEKCRRQWNLVDTDHLRYK 546
Query: 891 YMNAFDQAMNALDERFSFLSSSKQIVSDMNDEEKVIVFERGDLVFVFNFHP 739
+MN FD+AMN LDE+F FL+SSKQIVS N+E+KVIVFERGD+VFVFNFHP
Sbjct: 547 FMNNFDKAMNELDEKFHFLASSKQIVSSANEEDKVIVFERGDIVFVFNFHP 699
Score = 277 bits (599), Expect = 3e-073
Identities = 123/223 (55%), Positives = 151/223 (67%)
Frame = +1 / -2
Query: 739 GMEIENKN*ISTFKDNNLFLIVHVADDLL*RRKEGKSLIERIHRLVKRIHVLVPQVISVH 918
GME+ENK+ I++FK+N+L + A+ LL*R +E K LI+ IH VK IH LV QVI VH
Sbjct: 699 GMEVENKHYIASFKNNHLIFFICTANYLL*RCEEMKFLIKLIHGFVKIIHKLVSQVICVH 520
Query: 919 KAPLSSAFIIAPVVPFSWKVNPFWVTKLISHKIQVAITSKGHCDEVNHLLECNPSINCR* 1098
PLSS F IAP + F WKVNPF +TKLISHKI++A+ + HC E+NHL++CNP+IN
Sbjct: 519 *VPLSSTFFIAPTISFPWKVNPFRMTKLISHKIKIALAT*CHCYEMNHLVKCNPTINNWR 340
Query: 1099 SRLQV*HASVHFLVHQEKCNSFVANNRLIMALSICDAFFSISPVSQSMRYFTHRPLRVIF 1278
LQ *H VH LVH +CNS V NN LIM IC+ F SISPV Q YF HRPL + F
Sbjct: 339 R*LQT*HGRVHLLVH*GECNSLVTNN*LIMTFCICNTFLSISPVGQCEHYFLHRPLFISF 160
Query: 1279 ILQVVNPSIRDSHCQAIVKPNPTFINWPAKDRHA*NIFSNNSC 1407
+LQ+ NP + +SHC AI+K TF N P H NIF NN C
Sbjct: 159 MLQIFNPLVWNSHC*AIIKSKSTFRNRPT*SWHTRNIFRNNGC 31
Score = 215 bits (463), Expect = 2e-054
Identities = 120/223 (53%), Positives = 133/223 (59%)
Frame = -3 / +2
Query: 1406 QLLLLKMFQACRSFAGQLMKVGLGLTIAWQWLSLIDGLTT*RIKMTLSGRWVK*RIL*LT 1227
Q LL KMF C+ G +KV L L IA QWL GL * I SGR K* * T
Sbjct: 32 QPLLRKMFLVCQL*VGLFLKVDLDLIIA*QWLFQTSGLNI*SINEMNSGRCKK*CSH*PT 211
Query: 1226 GDILKNASHMLRAMISLLLATKLLHFS*WTRKCTLACQTCSLLHLQLIEGLHSKR*FTSS 1047
GDIL+N HM + MIS LL T+LLH *WTR+CTL C C+ L LI GLH R*F S
Sbjct: 212 GDILRNVLHMQKVMISQLLVTRLLHSP*WTRRCTLPCHVCNHLLQLLIVGLHFTR*FIS* 391
Query: 1046 QWPLEVMAT*ILWEMSLVTQNGLTFQEKGTTGAMINADDSGALWTLITCGTST*MRLTKR 867
QW A ILWEMSLV +NGLTFQ K GAM N +DSG WT IT TS *+ LTK
Sbjct: 392 QWH*VARAILILWEMSLVIRNGLTFQGKEMVGAMKNVEDSGT*WTQIT*DTSL*IILTKP 571
Query: 866 *MRSMRDFPSFRRQSRSSAT*TMRKRLLSLNVEI*FLFSISIP 738
*M MR+F S RQS+ A + R L LN I* LFS SIP
Sbjct: 572 *MSLMRNFISSHRQSK*LAVQMKKIR*LFLNEAI*CLFSTSIP 700
Score = 199 bits (429), Expect(2) = 1e-085
Identities = 95/125 (76%), Positives = 100/125 (80%)
Frame = +2 / -3
Query: 1040 AIVMK*IIFWSAIPRSIVGEAGCKSDMPVYISLSIRRNAIVLSPTID*SWLSAYAMHFSV 1219
AIVMK*II SAIPRS GE CK DM YISLSI+ NAIVLSPTID*S LSAYA HFSV
Sbjct: 398 AIVMK*IIL*SAIPRSTTGEGDCKHDMAEYISLSIKVNAIVLSPTID*S*LSAYATHFSV 219
Query: 1220 YLLLVKVCAISPIDHSESSLFFR*SIHLSGIAIARR*SNPTPPSSTGRQRTGMPETSSAT 1399
YLLLV V IS IDH S L F+ SIHLSGIAIARR*SNP+PPS TGR + G+PETSSA
Sbjct: 218 YLLLVSVSTISCIDHCSSRLCFKYSIHLSGIAIARR*SNPSPPSETGRPKVGIPETSSAI 39
Query: 1400 TVASG 1414
TVASG
Sbjct: 38 TVASG 24
Score = 187 bits (402), Expect = 4e-046
Identities = 108/204 (52%), Positives = 128/204 (62%)
Frame = -1 / +3
Query: 1429 NAQTLARSNCCC*RCFRHAGPLPAS**RWGWV*LSPGNGYP**MD*LPEE*R*L*VVDG* 1250
+ Q L+ N C RCF +A A *RW W+*LSP NGY +D*+ E * VVD
Sbjct: 9 HTQYLS*CNRYCGRCFWYANFRSACF*RWTWI*LSPSNGYSRQVD*IFEA*TR*TVVDAR 188
Query: 1249 NSAYFD*QEIY*KMHRIC*EP*SVYCWRQNYCISPDGQGNVHWHVRLAACFTYN*SRDCT 1070
NSA+ D QEIY*+M IC + *SV CW Q+YCI +GQG+V HV A F+ *S DCT
Sbjct: 189 NSAHTDQQEIY*EMCCICRKS*SVNCW*QDYCIHLNGQGDVLCHVMFAITFSSC*SWDCT 368
Query: 1069 PKDDSLHHNGPWR*WLLEFYGK*VWSPRMD*LSKRREQLEL**MQTTVEPCGH*SLAVQV 890
+DDS H+NG L FYGK*VWS MD*LSK R+ LEL* M TVE GH S +QV
Sbjct: 369 SQDDSFHNNGTRWRGLS*FYGK*VWSSGMD*LSKGRKWLEL*KM*KTVELSGHRSPEIQV 548
Query: 889 HECV*PSDECAR*EIFLPFVVKAD 818
+E * S E A *EI P +VKA+
Sbjct: 549 YE*F*QSHE*A**EISFPRIVKAN 620
Score = 140 bits (300), Expect(3) = 4e-036
Identities = 75/148 (50%), Positives = 85/148 (57%)
Frame = +3 / -1
Query: 822 ALTTKGRKISHRAHSSLGQTHSCTCTASDQCPQGSTVVCIYHXXXXXXXXXXXXXXGDQT 1001
ALT +G +ISH+AHS L Q +S TC + D CP STV I+H DQT
Sbjct: 616 ALTMRGNEISHQAHSWLCQNYS*TCISGDLCPLSSTVFYIFHSSNHFLPLESQSIPDDQT 437
Query: 1002 HFP*NSSSHHLQGPL**SESSFGVQSLDQL*VKQAASLTCQCTFPCPSGEMQ*FCRQQ*T 1181
HFP*N S PL *+ESS VQS DQ K A++T Q T PCP MQ* C QQ T
Sbjct: 436 HFP*N*DSPRHLVPLL*NESSCEVQSHDQQLEKVIANMTWQSTSPCPLR*MQ*SCHQQLT 257
Query: 1182 DHGSQHMRCIFQYISC*SKYALFHPSTT 1265
DH HM+ I QYISC S ALF STT
Sbjct: 256 DHDFLHMQHISQYISCWSV*ALFLASTT 173
Score = 140 bits (300), Expect(2) = 1e-085
Identities = 62/84 (73%), Positives = 67/84 (79%)
Frame = +2 / -3
Query: 740 GWKLKTKTKSPRSKTITFSSSFMSLTICFDDERKENLSSSAFIAWSNAFMYLYRK*SVST 919
GWKLKT T SPRSKTIT SSSF LTICFDD RK N SSS+F+A S F+ LY +*SVST
Sbjct: 698 GWKLKTNTISPRSKTITLSSSFALLTICFDDARK*NFSSSSFMALSKLFINLYLR*SVST 519
Query: 920 RLHCRLHLS*LQLFPSLGKSIHSG 991
+ HC LH S*LQ FPSLGKSIHSG
Sbjct: 518 KFHCLLHFS*LQPFPSLGKSIHSG 447
Score = 27.2 bits (53), Expect(3) = 4e-036
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / -1
Query: 738 WDGN*KQKLNLHVQRQ*PF 794
WDG+*KQ L VQ+Q P+
Sbjct: 700 WDGS*KQTLYRLVQKQSPY 644
Score = 24.4 bits (47), Expect(3) = 4e-036
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3 / -1
Query: 1314 PLPGDSQTQPHLHQLAGKGPACLKHXXXXXXXXARVC 1424
PL GD+Q Q HL + A A KH R C
Sbjct: 124 PLLGDNQIQVHLQKQADLKLAYQKHLPQ*RLHQDRYC 14
>gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_D06_A021 5', mRNA sequence
Length = 633
Score = 367 bits (795), Expect = e-100
Identities = 140/209 (66%), Positives = 167/209 (79%)
Frame = -2 / +3
Query: 1599 RYWLDEFMFDGFRFDGVTSMLYHHHGINVGFTGNYQEYFSLDTAVDAVVYMMLANHLMHK 1420
R+WL+E+ FDGFRFDGVTSM+Y HHG+ V FTGNY EYF T VDAVVY+ML N ++H
Sbjct: 6 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYAEYFGFATDVDAVVYLMLVNDMIHG 185
Query: 1419 LLPEATVVAEDVSGMPVLCRPVDEGGVGFDYRLAMAIPDRWIDYLKNKDDSEWSMGEIAH 1240
L P+A + EDVSGMP R V +GGVGFDYRL MA+ D+WI+ L K D +W MG+I
Sbjct: 186 LFPQAITIGEDVSGMPTFSRSVQDGGVGFDYRLHMAVADKWIELLSKKKDEDWQMGDIVF 365
Query: 1239 TLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTIDRGIALQKM 1060
TL+NRR++EKC+ YAESHDQ++VGDKTIAF LMDK+MY M+ QPA+P IDRGIAL KM
Sbjct: 366 TLSNRRWSEKCVVYAESHDQALVGDKTIAFWLMDKDMYDFMALDQPATPAIDRGIALHKM 545
Query: 1059 IHFITMALGGDGYLNFMGNEFGHPEWIDF 973
I +TM LGG+GYLNFMGNEFGHPEWIDF
Sbjct: 546 IRLVTMGLGGEGYLNFMGNEFGHPEWIDF 632
Score = 184 bits (397), Expect(2) = 2e-046
Identities = 103/185 (55%), Positives = 116/185 (62%)
Frame = +2 / -3
Query: 1037 RAIVMK*IIFWSAIPRSIVGEAGCKSDMPVYISLSIRRNAIVLSPTID*SWLSAYAMHFS 1216
+ IV II AIPRS+ G AG S + YISLS+ + AIVLSPT *S LSAY HFS
Sbjct: 568 KPIVTSRIIL*RAIPRSMAGVAG*SSAIKSYISLSMSQKAIVLSPTRA*S*LSAYTTHFS 389
Query: 1217 VYLLLVKVCAISPIDHSESSLFFR*SIHLSGIAIARR*SNPTPPSSTGRQRTGMPETSSA 1396
+LL V ISPI S S F SIHLS AI R*SNPTPPS T R++ G+P TSS
Sbjct: 388 DHLLFDSVNTISPICQSSSFFFESNSIHLSATAIWSR*SNPTPPSCTEREKVGIPLTSSP 209
Query: 1397 TTVASGKSLCIKWFASIM*TTASTAVSKLKYSW*FPVNPTLIPW**YSIDVTPSNRKPSN 1576
+A G I SI *TTAST+V+ KYS *FPVN T P Y IDVTPSN PSN
Sbjct: 208 IVMAWGNRP*IMSLTSIK*TTASTSVANPKYSA*FPVNATCNP*WVYIIDVTPSNLNPSN 29
Query: 1577 MNSSN 1591
+ SSN
Sbjct: 28 LYSSN 14
Score = 24.0 bits (46), Expect(2) = 2e-046
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3 / -1
Query: 990 GDQTHFP*NSSSHHLQGPL* 1049
G Q HFP*N + H PL*
Sbjct: 615 GVQIHFP*NLDTLHHLNPL* 556
>gb|DR088818.1|DR088818 RTAL1_4_F06.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_4_F06_A029 5', mRNA sequence
Length = 638
Score = 352 bits (762), Expect = 1e-095
Identities = 139/212 (65%), Positives = 159/212 (75%)
Frame = -2 / +2
Query: 1569 GFRFDGVTSMLYHHHGINVGFTGNYQEYFSLDTAVDAVVYMMLANHLMHKLLPEATVVAE 1390
GFRFDGVTSM+Y HHGI GF+G Y EYF ++ VVY+MLAN MH+L P +AE
Sbjct: 2 GFRFDGVTSMMYLHHGIGTGFSGGYHEYFEDKVDLEGVVYLMLANDAMHELYPHCITIAE 181
Query: 1389 DVSGMPVLCRPVDEGGVGFDYRLAMAIPDRWIDYLKNKDDSEWSMGEIAHTLTNRRYTEK 1210
DVSGMP+LC P GGVGFDYRL+MA+PD WI L++K D EW MG I TL NRR+ EK
Sbjct: 182 DVSGMPLLCIPTSNGGVGFDYRLSMAVPDMWIKLLRHKQDDEWDMGNIVQTLVNRRHLEK 361
Query: 1209 CIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTIDRGIALQKMIHFITMALGG 1030
+AYAESHDQ++VGDKTIAF LMDKEMYT MSDL +P I RGIAL KMI + ALGG
Sbjct: 362 SVAYAESHDQALVGDKTIAFWLMDKEMYTNMSDLTEMTPIISRGIALHKMIRLLVHALGG 541
Query: 1029 DGYLNFMGNEFGHPEWIDFPREGNNWSYDKCR 934
+ YLNF G EFGHPEW+DFPREGNN SY R
Sbjct: 542 EAYLNFEGYEFGHPEWLDFPREGNNNSYHYAR 637
Score = 179 bits (386), Expect(2) = 1e-045
Identities = 91/171 (53%), Positives = 108/171 (63%)
Frame = +2 / -3
Query: 1058 IIFWSAIPRSIVGEAGCKSDMPVYISLSIRRNAIVLSPTID*SWLSAYAMHFSVYLLLVK 1237
II SAIPR ++G KSDM VYISLSI +NAIVLSPT S LSAYA FS L +
Sbjct: 513 IIL*SAIPRDMIGVISVKSDMFVYISLSINQNAIVLSPTRAWS*LSAYATLFSRCLRFTR 334
Query: 1238 VCAISPIDHSESSLFFR*SIHLSGIAIARR*SNPTPPSSTGRQRTGMPETSSATTVASGK 1417
V I P+ HS S L IH+SG A+ +R*S PTPP G QR+G+PETSSA + G
Sbjct: 333 V*TILPMSHSSSCLCLSNLIHISGTAMDKR*SKPTPPLEVGMQRSGIPETSSAIVMQWGY 154
Query: 1418 SLCIKWFASIM*TTASTAVSKLKYSW*FPVNPTLIPW**YSIDVTPSNRKP 1570
+ C+ FAS+ TT S + KYSW* P P +PW Y + VTPSNRKP
Sbjct: 153 NSCMASFASMRYTTPSKSTLSSKYSW*PPEKPVPMPWWRYIMLVTPSNRKP 1
Score = 137 bits (293), Expect = 5e-031
Identities = 64/209 (30%), Positives = 112/209 (53%)
Frame = +1 / -2
Query: 943 IIAPVVPFSWKVNPFWVTKLISHKIQVAITSKGHCDEVNHLLECNPSINCR*SRLQV*HA 1122
++ +V + KV P VTKLIS +I+++ +++ ++ +HL++CN + R Q+ H
Sbjct: 628 VVRVIVSLARKVEPLGVTKLISFEIEISFSTQCVNEKPDHLVKCNTTRYDRRHLSQIGHV 449
Query: 1123 SVHFLVHQEKCNSFVANNRLIMALSICDAFFSISPVSQSMRYFTHRPLRVIFILQVVNPS 1302
VH VHQ + + V + L+M L +C+A + + +S+ TH P V+ + + ++P
Sbjct: 448 RVHLFVHQPERDRLVTDKGLVMTLGVCNALL*VPSIYESLNDITHVPFIVLLVSE*LDPH 269
Query: 1303 IRDSHCQAIVKPNPTFINWPAKDRHA*NIFSNNSCFWQEFVH*MVCKHHVNNCIHSCVQT 1482
IRDSH IV+ +P+ A+ RH +I N VH +VC+H V +
Sbjct: 268 IRDSHG*TIVEAHPSIRGGDAEKRHTGDILGNRDAMGV*LVHGIVCEHEVYDTFQVDFIL 89
Query: 1483 EIFLVVSSKPHIDTMVMIQH*CNSIKSEA 1569
E+F+V K D +V + H +++K EA
Sbjct: 88 EVFVVTPRKASADAVVEVHHARDTVKPEA 2
Score = 25.8 bits (50), Expect(2) = 1e-045
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2 / -3
Query: 956 LFPSLGKSIHSG 991
LFPS GKS HSG
Sbjct: 615 LFPSRGKSSHSG 580
>dbj|BD236172.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 408
Score = 281 bits (608), Expect = 2e-074
Identities = 109/135 (80%), Positives = 121/135 (89%)
Frame = -2 / +3
Query: 1125 TGMSDLQPASPTIDRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPREGNNWSY 946
+ MS LQ SP +DRGIAL KMIHFITMALGG+GYLNFMGNEFGHPEWIDFPREGN WSY
Sbjct: 3 SAMSCLQSPSPVVDRGIALHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSY 182
Query: 945 DKCRRQWSLVDTDHLRYKYMNAFDQAMNALDERFSFLSSSKQIVSDMNDEEKVIVFERGD 766
+KCRRQW+LVDTDHLRYK+MN FD+AMN LDE+F FL+SSKQIVS N+E+KVIVFERGD
Sbjct: 183 EKCRRQWNLVDTDHLRYKFMNNFDKAMNELDEKFHFLASSKQIVSIANEEDKVIVFERGD 362
Query: 765 LVFVFNFHPKKTYEG 721
+VFVFNFHPK TY G
Sbjct: 363 IVFVFNFHPKNTYPG 407
Score = 161 bits (346), Expect = 2e-038
Identities = 73/131 (55%), Positives = 94/131 (71%)
Frame = +1 / -2
Query: 727 VSFLGMEIENKN*ISTFKDNNLFLIVHVADDLL*RRKEGKSLIERIHRLVKRIHVLVPQV 906
+ LGME+ENK+ I++FK+N+L + A+ LL*R +E K LI+ IH VK IH LV QV
Sbjct: 401 ICILGMEVENKHYIASFKNNHLIFFICNANYLL*RCEEMKFLIKLIHGFVKIIHKLVSQV 222
Query: 907 ISVHKAPLSSAFIIAPVVPFSWKVNPFWVTKLISHKIQVAITSKGHCDEVNHLLECNPSI 1086
I VH PLSS F IAP + F WKVNPF +TKLISHKI++A+ + HC E+NHL++CNP+I
Sbjct: 221 ICVH*VPLSSTFFIAPTISFPWKVNPFRMTKLISHKIKIALAT*CHCYEMNHLVKCNPTI 42
Query: 1087 NCR*SRLQV*H 1119
N LQ *H
Sbjct: 41 NNWRR*LQT*H 9
Score = 148 bits (318), Expect(2) = 2e-041
Identities = 66/90 (73%), Positives = 71/90 (78%)
Frame = +2 / -3
Query: 722 PS*VFLGWKLKTKTKSPRSKTITFSSSFMSLTICFDDERKENLSSSAFIAWSNAFMYLYR 901
P VFLGWKLKT T SPRSKTIT SSSF LTICFDD RK N SSS+F+A S F+ LY
Sbjct: 406 PGYVFLGWKLKTNTISPRSKTITLSSSFAMLTICFDDARK*NFSSSSFMALSKLFINLYL 227
Query: 902 K*SVSTRLHCRLHLS*LQLFPSLGKSIHSG 991
+*SVST+ HC LH S*LQ FPSLGKSIHSG
Sbjct: 226 R*SVSTKFHCLLHFS*LQPFPSLGKSIHSG 137
Score = 127 bits (272), Expect = 4e-028
Identities = 72/131 (54%), Positives = 79/131 (60%)
Frame = -3 / +1
Query: 1127 TLACQTCSLLHLQLIEGLHSKR*FTSSQWPLEVMAT*ILWEMSLVTQNGLTFQEKGTTGA 948
TL C C+ L LI GLH R*F S QW A ILWEMSLV +NGLTFQ K GA
Sbjct: 1 TLPCHVCNHLLQLLIVGLHFTR*FIS*QWH*VARAILILWEMSLVIRNGLTFQGKEMVGA 180
Query: 947 MINADDSGALWTLITCGTST*MRLTKR*MRSMRDFPSFRRQSRSSAT*TMRKRLLSLNVE 768
M N +DSG WT IT TS *+ LTK *M MR+F S RQS+ A + R L LN
Sbjct: 181 MKNVEDSGT*WTQIT*DTSL*IILTKP*MSLMRNFISSHRQSK*LALQMKKIR*LFLNEA 360
Query: 767 I*FLFSISIPR 735
I* LFS SIPR
Sbjct: 361 I*CLFSTSIPR 393
Score = 96.4 bits (204), Expect(2) = 5e-023
Identities = 56/101 (55%), Positives = 64/101 (63%)
Frame = -1 / +2
Query: 1120 HVRLAACFTYN*SRDCTPKDDSLHHNGPWR*WLLEFYGK*VWSPRMD*LSKRREQLEL** 941
HV A F+ *S DCT +DDS H+NG L FYGK*VWS MD*LSK R+ LEL*
Sbjct: 8 HVMFAITFSSC*SWDCTSQDDSFHNNGTRWRGLS*FYGK*VWSSGMD*LSKGRKWLEL*K 187
Query: 940 MQTTVEPCGH*SLAVQVHECV*PSDECAR*EIFLPFVVKAD 818
M TVE GH S +QV+E * S E A *EI P +VKA+
Sbjct: 188 M*KTVELSGHRSPEIQVYE*F*QSHE*A**EISFPRIVKAN 310
Score = 43.2 bits (88), Expect(2) = 2e-041
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = +2 / -3
Query: 1040 AIVMK*IIFWSAIPRSIVGEAGCKSDM 1120
AIVMK*II SAIPRS GE CK DM
Sbjct: 88 AIVMK*IIL*SAIPRSTTGEGDCKHDM 8
Score = 33.6 bits (67), Expect(2) = 5e-023
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -1 / +2
Query: 790 GYCL*TWRFSFCFQFPSQE 734
G C *T R+S CFQ PSQE
Sbjct: 338 GDCF*TRRYSVCFQLPSQE 394
>dbj|BD236173.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 476
Score = 160 bits (345), Expect(2) = 2e-071
Identities = 64/95 (67%), Positives = 76/95 (80%)
Frame = -2 / +3
Query: 2007 KPAVSTYREFADNVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAVSSRSGTPEDL 1828
+P V TY+EF N LPRI+ YN +QLMAVMEH+YYASFGY VT+FFA SSR GTPE+L
Sbjct: 3 EPRVGTYKEFTLNTLPRIKKLGYNVIQLMAVMEHAYYASFGYQVTSFFAASSRYGTPEEL 182
Query: 1827 KYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYD 1723
K L+D AHS+G+ VL+DVVHSHA NV DGLN +D
Sbjct: 183 KELIDTAHSMGITVLLDVVHSHACKNVLDGLNQFD 287
Score = 131 bits (280), Expect(2) = 2e-071
Identities = 47/71 (66%), Positives = 58/71 (81%)
Frame = -2 / +3
Query: 1737 LNGYDVGQSTQESYFHAGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWLDEFMFDGFRF 1558
L+G + T YFH G +GYH LWDSRLFNY+++EVLRFL+SNLR+W++E+ FDGFRF
Sbjct: 264 LDGLNQFDGTDHQYFHGGPKGYHDLWDSRLFNYSHYEVLRFLMSNLRFWMEEYQFDGFRF 443
Query: 1557 DGVTSMLYHHH 1525
DGVTSMLY HH
Sbjct: 444 DGVTSMLYLHH 476
>gb|CO364026.1|CO364026 RTK1_13_F04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_F04_A029 3', mRNA sequence
Length = 852
Score = 215 bits (463), Expect = 2e-054
Identities = 87/126 (69%), Positives = 99/126 (78%)
Frame = -2 / +3
Query: 879 FDQAMNALDERFSFLSSSKQIVSDMNDEEKVIVFERGDLVFVFNFHPKKTYEGYKVGCDL 700
FD+AMN LDE+F FL+SSKQIVS N+E+KVIVFERGD+VFVFNFHPK TY GYK+GCD+
Sbjct: 3 FDKAMNELDEKFHFLASSKQIVSSANEEDKVIVFERGDIVFVFNFHPKNTYSGYKIGCDM 182
Query: 699 PGKYRVALDSDALXXXXXXXXXXXXXXFTSPEGVPGVPETNFNNRPNSFKVLSPPRTCVA 520
PGKYRVALDSDAL FTSPEGVPG PETNFN RPNSFK+L P RT +
Sbjct: 183 PGKYRVALDSDALEFGGHGRVSHDVDHFTSPEGVPGKPETNFNGRPNSFKILMPSRTSLV 362
Query: 519 YYRVDE 502
Y++V E
Sbjct: 363 YFKVPE 380
Score = 175 bits (377), Expect = 1e-042
Identities = 82/116 (70%), Positives = 87/116 (75%)
Frame = +2 / -3
Query: 530 VRGGERTLNEFGRLLKFVSGTPGTPSGDVK*STSWPTLPCPPKTRASESRATLYFPGKSH 709
VR G L EFGR LKFVSG PGTPSG+VK STS TLP PP + AS S+ATLYFPG S
Sbjct: 352 VREGINILKEFGRPLKFVSGFPGTPSGEVKWSTS*LTLP*PPNSNASLSKATLYFPGISQ 173
Query: 710 PTL*PS*VFLGWKLKTKTKSPRSKTITFSSSFMSLTICFDDERKENLSSSAFIAWS 877
P L P VFLGWKLKT T SPRSKTIT SSSF LTICFDD RK N SSS+F+A S
Sbjct: 172 PILYPEYVFLGWKLKTNTISPRSKTITLSSSFALLTICFDDARK*NFSSSSFMALS 5
>gb|CO364190.1|CO364190 RTK1_14_F04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_F04_A029 3', mRNA sequence
Length = 847
Score = 212 bits (457), Expect = 1e-053
Identities = 86/125 (68%), Positives = 98/125 (78%)
Frame = -2 / +1
Query: 876 DQAMNALDERFSFLSSSKQIVSDMNDEEKVIVFERGDLVFVFNFHPKKTYEGYKVGCDLP 697
D+AMN LDE+F FL+SSKQIVS N+E+KVIVFERGD+VFVFNFHPK TY GYK+GCD+P
Sbjct: 1 DKAMNELDEKFHFLASSKQIVSSANEEDKVIVFERGDIVFVFNFHPKNTYSGYKIGCDMP 180
Query: 696 GKYRVALDSDALXXXXXXXXXXXXXXFTSPEGVPGVPETNFNNRPNSFKVLSPPRTCVAY 517
GKYRVALDSDAL FTSPEGVPG PETNFN RPNSFK+L P RT + Y
Sbjct: 181 GKYRVALDSDALEFGGHGRVSHDVDHFTSPEGVPGKPETNFNGRPNSFKILMPSRTSLVY 360
Query: 516 YRVDE 502
++V E
Sbjct: 361 FKVPE 375
Score = 174 bits (375), Expect = 2e-042
Identities = 81/114 (71%), Positives = 86/114 (75%)
Frame = +2 / -3
Query: 530 VRGGERTLNEFGRLLKFVSGTPGTPSGDVK*STSWPTLPCPPKTRASESRATLYFPGKSH 709
VR G L EFGR LKFVSG PGTPSG+VK STS TLP PP + AS S+ATLYFPG S
Sbjct: 347 VREGINILKEFGRPLKFVSGFPGTPSGEVKWSTS*LTLP*PPNSNASLSKATLYFPGISQ 168
Query: 710 PTL*PS*VFLGWKLKTKTKSPRSKTITFSSSFMSLTICFDDERKENLSSSAFIA 871
P L P VFLGWKLKT T SPRSKTIT SSSF LTICFDD RK N SSS+F+A
Sbjct: 167 PILYPEYVFLGWKLKTNTISPRSKTITLSSSFALLTICFDDARK*NFSSSSFMA 6
>gb|DR019864.1|DR019864 STRS1_33_A09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_A09_A034 3', mRNA sequence
Length = 867
Score = 212 bits (457), Expect = 1e-053
Identities = 86/125 (68%), Positives = 98/125 (78%)
Frame = -2 / +1
Query: 876 DQAMNALDERFSFLSSSKQIVSDMNDEEKVIVFERGDLVFVFNFHPKKTYEGYKVGCDLP 697
D+AMN LDE+F FL+SSKQIVS N+E+KVIVFERGD+VFVFNFHPK TY GYK+GCD+P
Sbjct: 1 DKAMNELDEKFHFLASSKQIVSSANEEDKVIVFERGDIVFVFNFHPKNTYSGYKIGCDMP 180
Query: 696 GKYRVALDSDALXXXXXXXXXXXXXXFTSPEGVPGVPETNFNNRPNSFKVLSPPRTCVAY 517
GKYRVALDSDAL FTSPEGVPG PETNFN RPNSFK+L P RT + Y
Sbjct: 181 GKYRVALDSDALEFGGHGRVSHDVDHFTSPEGVPGKPETNFNGRPNSFKILMPSRTSLVY 360
Query: 516 YRVDE 502
++V E
Sbjct: 361 FKVPE 375
Score = 174 bits (375), Expect = 2e-042
Identities = 81/114 (71%), Positives = 86/114 (75%)
Frame = +2 / -2
Query: 530 VRGGERTLNEFGRLLKFVSGTPGTPSGDVK*STSWPTLPCPPKTRASESRATLYFPGKSH 709
VR G L EFGR LKFVSG PGTPSG+VK STS TLP PP + AS S+ATLYFPG S
Sbjct: 347 VREGINILKEFGRPLKFVSGFPGTPSGEVKWSTS*LTLP*PPNSNASLSKATLYFPGISQ 168
Query: 710 PTL*PS*VFLGWKLKTKTKSPRSKTITFSSSFMSLTICFDDERKENLSSSAFIA 871
P L P VFLGWKLKT T SPRSKTIT SSSF LTICFDD RK N SSS+F+A
Sbjct: 167 PILYPEYVFLGWKLKTNTISPRSKTITLSSSFALLTICFDDARK*NFSSSSFMA 6
>gb|DR059847.1|DR059847 RTNIT1_20_D09.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_20_D09_A029 3', mRNA sequence
Length = 726
Score = 157 bits (337), Expect = 4e-037
Identities = 60/105 (57%), Positives = 80/105 (76%)
Frame = -2 / -2
Query: 2577 TAKGDVDHLPIYDLDPKLEIFKDHFRYRMKRFLEQKGSIEENEGSLESFSKGYLKFGINT 2398
T + ++++L + +DP L K HF+YR ++L+QK +IE+ EGSLE FS+GYLKFG N
Sbjct: 320 TIEDELENLAVLTVDPSLASHKAHFQYRYTKYLQQKQAIEKYEGSLEDFSEGYLKFGFNR 141
Query: 2397 NEDGTVYREWAPAAQEAELIGDFNDWNGANHKMEKDKFGVWSIKI 2263
+ VYREWAPAA+EA+LIGDFN WNG H+MEKDKFGVW++ I
Sbjct: 140 EGNKIVYREWAPAAKEAQLIGDFNAWNGMGHQMEKDKFGVWTVYI 6
Score = 105 bits (223), Expect = 2e-021
Identities = 55/105 (52%), Positives = 66/105 (62%)
Frame = +2 / +1
Query: 2276 QTPNLSFSILWFAPFQSLKSPISSASCAAGAHSRYTVPSSFVLIPNFK*PLEKDSRLPSF 2455
QTPNLSFSI PFQ+LKSPIS AS AAGAHSRYT+ L PNFK*P EK SRLPS+
Sbjct: 19 QTPNLSFSIW*PIPFQALKSPISCASFAAGAHSRYTILFPSRLKPNFK*PSEKSSRLPSY 198
Query: 2456 SSIDPFCSRNLFIRYLKWSLNISSLGSRSYMGRWSTSPLAVAIVL 2590
SI FC + Y K +L + GS ++S+S V ++
Sbjct: 199 FSIACFCCKYFVYLYWK*ALCEAKDGSTVKTAKFSSSSSIVLSIV 333
>dbj|BD236175.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 258
Score = 139 bits (298), Expect = 1e-031
Identities = 53/85 (62%), Positives = 63/85 (74%)
Frame = -2 / +2
Query: 1548 TSMLYHHHGINVGFTGNYQEYFSLDTAVDAVVYMMLANHLMHKLLPEATVVAEDVSGMPV 1369
TSM+Y HHG+ V FTGNY EYF T VDAVVY+ML N ++H L P+A + EDVSGMP
Sbjct: 2 TSMMYTHHGLQVAFTGNYAEYFGFATDVDAVVYLMLVNDMIHGLFPQAITIGEDVSGMPT 181
Query: 1368 LCRPVDEGGVGFDYRLAMAIPDRWI 1294
R V +GGVGFDYRL MA+ D+WI
Sbjct: 182 FSRSVQDGGVGFDYRLHMAVADKWI 256
>gb|DR088754.1|DR088754 RTAL1_4_F06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_4_F06_A029 3', mRNA sequence
Length = 571
Score = 131 bits (281), Expect = 2e-029
Identities = 51/102 (50%), Positives = 72/102 (70%)
Frame = -2 / +1
Query: 972 PREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALDERFSFLSSSKQIVSDMNDEE 793
PREGNN SY RRQW++VD LRY+Y+N FD MN +E++ +L++ + VS N+ +
Sbjct: 1 PREGNNNSYHYARRQWNVVDDAVLRYRYLNGFDSEMNNTEEKYGWLAAPQAYVSLKNEVD 180
Query: 792 KVIVFERGDLVFVFNFHPKKTYEGYKVGCDLPGKYRVALDSD 667
KVIVFER L+FVFNFHP K++ Y++G + G+Y V L +D
Sbjct: 181 KVIVFERAGLLFVFNFHPTKSFSDYRIGVEEAGEYHVILSTD 306
>dbj|BD236171.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 375
Score = 93.2 bits (197), Expect(3) = 2e-024
Identities = 32/56 (57%), Positives = 45/56 (80%)
Frame = -2 / +3
Query: 2127 PYDGVHWDPPASERYTFKHPRPSKPAAPRIYEAHVGMSGEKPAVSTYREFADNVLP 1960
PY+G+++DPP ++Y FK+PRP +P + RIYEAHVGMS +P ++TY EF D+VLP
Sbjct: 207 PYNGIYYDPPPEDKYEFKYPRPKQPKSLRIYEAHVGMSSTEPKINTYVEFRDDVLP 374
Score = 34.5 bits (69), Expect(3) = 2e-024
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2 / +3
Query: 2334 DFNDWNGANHKMEKDKFGVWSI 2269
DFN+WN M K++FGVW I
Sbjct: 3 DFNNWNPNADVMTKNEFGVWEI 68
Score = 24.4 bits (47), Expect(3) = 2e-024
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2 / +3
Query: 2262 DHVKGKPAIPHNSKVK 2215
++ G P IPH S+VK
Sbjct: 78 NNADGSPPIPHGSRVK 125
>dbj|BD236174.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 313
Score = 96.8 bits (205), Expect(2) = 9e-023
Identities = 36/63 (57%), Positives = 46/63 (73%)
Frame = -2 / +1
Query: 2382 VYREWAPAAQEAELIGDFNDWNGANHKMEKDKFGVWSIKIDHVKGKPAIPHNSKVKFRFL 2203
VY EWAP A EA LIGDFN+W+ +H M KD++GVW I I + G+PAIPH+SK+K F+
Sbjct: 61 VYHEWAPNAVEASLIGDFNNWDRHSHAMTKDQYGVWGITIPSINGQPAIPHDSKIKVSFV 240
Query: 2202 HGG 2194
G
Sbjct: 241 IPG 249
Score = 32.2 bits (64), Expect(2) = 9e-023
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2 / +1
Query: 2439 ESFSKGYLKFGINTNEDGTV 2380
E F++GY KFG+N DG++
Sbjct: 1 EQFTRGYEKFGLNAKPDGSI 60
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,614,304,274
Number of Sequences: 355925
Number of extensions: 25918615
Number of successful extensions: 115927
Number of sequences better than 1.0e-020: 14
length of database: 72,425,745
effective HSP length: 56
effective length of database: 52,493,945
effective search space used: 46194671600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)