TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521641.2.1
(594 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ702952.1|BQ702952 NXSI_134_F04_F NXSI (Nsf Xylem Side ... 171 3e-042
gb|CF663920.1|CF663920 RTCNT1_6_B08.b1_A029 Root control Pi... 171 3e-042
gb|CF672997.1|CF672997 RTCNT1_75_H01.b1_A029 Root control P... 171 3e-042
gb|CO172882.1|CO172882 NDL1_32_B09.g1_A029 Needles control ... 171 3e-042
gb|CO197695.1|CO197695 GEO1_8_H01.b1_A029 Root gravitropism... 171 3e-042
gb|CO198819.1|CO198819 GEO1_16_G05.g1_A029 Root gravitropis... 171 3e-042
gb|CO363825.1|CO363825 RTK1_12_B11.b1_A029 Roots minus pota... 171 3e-042
gb|CO363908.1|CO363908 RTK1_12_B11.g1_A029 Roots minus pota... 171 3e-042
gb|CO365053.1|CO365053 RTK1_23_H06.b1_A029 Roots minus pota... 171 3e-042
gb|CO365142.1|CO365142 RTK1_23_H06.g1_A029 Roots minus pota... 171 3e-042
gb|DR014982.1|DR014982 HEAT1_52_F11.g1_A029 Root at 37 C fo... 171 3e-042
gb|DR018974.1|DR018974 STRS1_27_C02.b1_A034 Shoot tip pitch... 171 3e-042
gb|DR018984.1|DR018984 STRS1_27_D02.b1_A034 Shoot tip pitch... 171 3e-042
gb|DR020253.1|DR020253 STRS1_35_D09.g1_A034 Shoot tip pitch... 171 3e-042
gb|DR057721.1|DR057721 RTNIT1_7_A06.g1_A029 Roots minus nit... 171 3e-042
gb|DR070193.1|DR070193 RTDK1_11_G12.g1_A029 Roots, dark Pin... 171 3e-042
gb|DR072289.1|DR072289 RTDK1_25_G01.b1_A029 Roots, dark Pin... 171 3e-042
gb|DR101611.1|DR101611 STRR1_74_C04.g1_A033 Stem Response R... 171 3e-042
gb|DR161469.1|DR161469 RTFE1_12_A09.b1_A029 Roots minus iro... 171 3e-042
gb|DR161544.1|DR161544 RTFE1_12_A09.g1_A029 Roots minus iro... 171 3e-042
gb|DR167624.1|DR167624 RTPHOS1_20_B02.b1_A029 Roots minus p... 171 3e-042
gb|DR167697.1|DR167697 RTPHOS1_20_B02.g1_A029 Roots minus p... 171 3e-042
gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase ... 171 3e-042
gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus pota... 171 5e-042
gb|U76725.1|PRU76725 Pinus radiata endo-beta-1,4-glucanase ... 171 5e-042
gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response R... 165 3e-040
gb|CO368326.1|CO368326 RTK1_40_A07.b1_A029 Roots minus pota... 163 1e-039
gb|BF610412.1|BF610412 NXSI_058_D03_F NXSI (Nsf Xylem Side ... 160 5e-039
gb|DR048217.1|DR048217 RTBOR1_7_G09.b2_A029 Roots plus adde... 154 6e-037
gb|BF516953.1|BF516953 NXSI_007_C11_F NXSI (Nsf Xylem Side ... 151 3e-036
gb|DR072362.1|DR072362 RTDK1_25_G01.g1_A029 Roots, dark Pin... 151 3e-036
gb|AW870233.1|AW870233 NXNV_125_H06_F Nsf Xylem Normal wood... 149 2e-035
gb|CF668810.1|CF668810 RTCNT1_38_G04.g1_A029 Root control P... 147 5e-035
gb|CF668728.1|CF668728 RTCNT1_38_G04.b1_A029 Root control P... 82 2e-034
gb|DR072510.1|DR072510 RTDK1_26_F03.g1_A029 Roots, dark Pin... 141 3e-033
gb|BX680701.1|BX680701 BX680701 RS Pinus pinaster cDNA clon... 136 2e-031
gb|BM134202.1|BM134202 NXLV_018_A05_F NXLV (Nsf Xylem Late ... 135 2e-031
gb|BF060615.1|BF060615 NXCI_118_B03_F NXCI (Nsf Xylem Compr... 134 4e-031
gb|DR013159.1|DR013159 HEAT1_17_H11.b1_A029 Root at 37 C fo... 132 2e-030
gb|DR179146.1|DR179146 RTMNUT1_16_F11.b1_A029 Roots minus m... 132 2e-030
gb|DR179224.1|DR179224 RTMNUT1_16_F11.g1_A029 Roots minus m... 132 2e-030
gb|BE187293.1|BE187293 NXNV_162_B08_F Nsf Xylem Normal wood... 130 1e-029
gb|DR099637.1|DR099637 STRR1_57_B05.b1_A033 Stem Response R... 122 2e-027
gb|DR011322.1|DR011322 HEAT1_5_B10.b1_A029 Root at 37 C for... 120 1e-026
gb|DR163056.1|DR163056 RTFE1_24_H02.b1_A029 Roots minus iro... 116 1e-025
gb|CV035007.1|CV035007 RTNACL1_13_B12.b1_A029 Roots plus ad... 80 7e-025
gb|DT631580.1|DT631580 EST1146511 Normalized pine embryo li... 80 7e-025
gb|DR683696.1|DR683696 EST1073772 Normalized pine embryo li... 80 7e-025
gb|DR683407.1|DR683407 EST1073483 Normalized pine embryo li... 80 7e-025
gb|CF666852.1|CF666852 RTCNT1_26_C10.g1_A029 Root control P... 111 3e-024
gb|AA557072.1|AA557072 914 Loblolly pine N Pinus taeda cDNA... 107 5e-023
gb|DR695212.1|DR695212 EST1085305 Normalized pine embryo li... 73 4e-022
gb|BQ701766.1|BQ701766 NXSI_120_D02_F NXSI (Nsf Xylem Side ... 70 9e-022
gb|BE241139.1|BE241139 NXNV_173_C11_F Nsf Xylem Normal wood... 102 2e-021
gb|BM367436.1|BM367436 NXLV_049_B10_F NXLV (Nsf Xylem Late ... 70 4e-021
gb|BM133366.1|BM133366 NXLV_004_H12_F NXLV (Nsf Xylem Late ... 70 4e-021
>gb|BQ702952.1|BQ702952 NXSI_134_F04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_134_F04 5' similar to Arabidopsis thaliana
sequence At1g02800 endo-1,4-beta-glucanase precursor,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 521
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 20 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 199
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 200 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 301
>gb|CF663920.1|CF663920 RTCNT1_6_B08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_B08_A029 3', mRNA sequence
Length = 774
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 123 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 302
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 303 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 404
>gb|CF672997.1|CF672997 RTCNT1_75_H01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_H01_A029 3', mRNA sequence
Length = 737
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 114 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 293
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 294 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 395
>gb|CO172882.1|CO172882 NDL1_32_B09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_32_B09_A029 5', mRNA sequence
Length = 815
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 403 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 582
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 583 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 684
>gb|CO197695.1|CO197695 GEO1_8_H01.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_8_H01_A029 3', mRNA sequence
Length = 648
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 25 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 204
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 205 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 306
>gb|CO198819.1|CO198819 GEO1_16_G05.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_16_G05_A029 5', mRNA sequence
Length = 722
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 86 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 265
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 266 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 367
>gb|CO363825.1|CO363825 RTK1_12_B11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_B11_A029 3', mRNA sequence
Length = 860
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 299 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 120
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 119 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 18
>gb|CO363908.1|CO363908 RTK1_12_B11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_B11_A029 5', mRNA sequence
Length = 780
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 594 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 415
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 414 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 313
>gb|CO365053.1|CO365053 RTK1_23_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_H06_A029 3', mRNA sequence
Length = 875
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 194 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 373
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 374 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 475
>gb|CO365142.1|CO365142 RTK1_23_H06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_H06_A029 5', mRNA sequence
Length = 855
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 210 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 389
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 390 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 491
>gb|DR014982.1|DR014982 HEAT1_52_F11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_F11_A029 5', mRNA sequence
Length = 877
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 579 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 400
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 399 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 298
>gb|DR018974.1|DR018974 STRS1_27_C02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_C02_A034 3', mRNA sequence
Length = 794
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 171 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 350
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 351 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 452
>gb|DR018984.1|DR018984 STRS1_27_D02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_D02_A034 3', mRNA sequence
Length = 791
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 169 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 348
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 349 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 450
>gb|DR020253.1|DR020253 STRS1_35_D09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_35_D09_A034 5', mRNA sequence
Length = 734
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 590 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 411
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 410 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 309
>gb|DR057721.1|DR057721 RTNIT1_7_A06.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_A06_A029 5', mRNA sequence
Length = 903
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / -3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 664 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 485
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 484 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 383
>gb|DR070193.1|DR070193 RTDK1_11_G12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_G12_A029 5', mRNA sequence
Length = 749
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 620 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 441
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 440 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 339
>gb|DR072289.1|DR072289 RTDK1_25_G01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_25_G01_A029 3', mRNA sequence
Length = 696
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 17 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 196
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 197 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 298
>gb|DR101611.1|DR101611 STRR1_74_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_C04_A033 5', mRNA sequence
Length = 574
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 189 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 368
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 369 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 470
>gb|DR161469.1|DR161469 RTFE1_12_A09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_A09_A029 3', mRNA sequence
Length = 804
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 113 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 292
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 293 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 394
>gb|DR161544.1|DR161544 RTFE1_12_A09.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_A09_A029 5', mRNA sequence
Length = 729
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 208 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 387
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 388 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 489
>gb|DR167624.1|DR167624 RTPHOS1_20_B02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_B02_A029 3', mRNA sequence
Length = 752
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 131 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 310
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 311 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 412
>gb|DR167697.1|DR167697 RTPHOS1_20_B02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_B02_A029 5', mRNA sequence
Length = 835
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 209 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 388
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 389 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 490
>gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase (PrCel2) mRNA, complete cds
Length = 1950
Score = 171 bits (369), Expect = 3e-042
Identities = 67/94 (71%), Positives = 75/94 (79%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 1296 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 1475
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 1476 DHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 1577
>gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_B06_A029 5', mRNA sequence
Length = 708
Score = 171 bits (367), Expect = 5e-042
Identities = 65/91 (71%), Positives = 74/91 (81%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG+K+P RIHHR SSLPS+ HP +I C+ GF +LY+ G NPN+LVGAVVGGPD
Sbjct: 569 YMVGYGSKFPERIHHRGSSLPSIYNHPQKISCNDGFQSLYSNGPNPNILVGAVVGGPDNN 390
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
DRF DERND+ HSEP TYINAP VG LAYLA
Sbjct: 389 DRFSDERNDYAHSEPTTYINAPFVGCLAYLA 297
>gb|U76725.1|PRU76725 Pinus radiata endo-beta-1,4-glucanase (PrCel1) mRNA, complete cds
Length = 1928
Score = 171 bits (367), Expect = 5e-042
Identities = 66/93 (70%), Positives = 74/93 (79%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG+ YP RIHHR SSLPS HP I C+ GF +LY+ NPN+LVGAVVGGPD
Sbjct: 1295 YMVGYGSHYPERIHHRGSSLPSKGNHPQAIPCNAGFQSLYSNAPNPNILVGAVVGGPDSM 1474
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHS 316
DRFPD+RND+E SEP TYINAP VG+LAYLAHS
Sbjct: 1475 DRFPDDRNDYEQSEPTTYINAPFVGSLAYLAHS 1573
>gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_B05_A033 3', mRNA sequence
Length = 670
Score = 165 bits (354), Expect = 3e-040
Identities = 61/91 (67%), Positives = 73/91 (80%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P IHHR SSLPS+ HP +I C+ GF A ++ NPN+LVGAVVGGPD
Sbjct: 190 YMVGYGAKFPEHIHHRGSSLPSIHMHPQKISCNDGFEAFHSNAPNPNILVGAVVGGPDNS 369
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
D FPD+RND+ HSEP TYINAPLVG+LAY++
Sbjct: 370 DHFPDDRNDYAHSEPTTYINAPLVGSLAYMS 462
Score = 104 bits (221), Expect = 7e-022
Identities = 51/91 (56%), Positives = 57/91 (62%)
Frame = +2 / -3
Query: 320 CAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSRLGLAPPAYSAVNPCE 499
C *A PTSGALM*V GSEC+ S RSSG S +SGPPTTAPTS GL ++A P
Sbjct: 464 CDI*AREPTSGALM*VVGSECA*SLRSSGKWSLLSGPPTTAPTSMFGLGALLWNASKPSL 285
Query: 500 QPILAGCAATDGSDEARWWMRRGYLAP*PTM 592
I GC +G+DE M G LAP*PTM
Sbjct: 284 HEIFCGCM*MEGNDEPL*CMCSGNLAP*PTM 192
>gb|CO368326.1|CO368326 RTK1_40_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_A07_A029 3', mRNA sequence
Length = 711
Score = 163 bits (350), Expect = 1e-039
Identities = 64/94 (68%), Positives = 72/94 (76%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 78 YMVGYGAKFPERIHHRGWSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 257
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ H EP TYINAPLVG+LAY AHS+
Sbjct: 258 DHFSDERNDYAHFEPTTYINAPLVGSLAYWAHSF 359
>gb|BF610412.1|BF610412 NXSI_058_D03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_058_D03 5' similar to Arabidopsis thaliana
sequence At1g02800 endo-1,4-beta-glucanase precursor,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 437
Score = 160 bits (345), Expect = 5e-039
Identities = 64/94 (68%), Positives = 71/94 (75%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVG D
Sbjct: 23 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGXXDNN 202
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
D F DERND+ HSEP TYINAPLV LAYLAHS+
Sbjct: 203 DHFSDERNDYAHSEPTTYINAPLVXXLAYLAHSF 304
>gb|DR048217.1|DR048217 RTBOR1_7_G09.b2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_7_G09_A029 3', mRNA sequence
Length = 655
Score = 154 bits (330), Expect = 6e-037
Identities = 60/87 (68%), Positives = 68/87 (78%)
Frame = -1 / +3
Query: 573 KYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDER 394
K+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD D F DER
Sbjct: 3 KFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDER 182
Query: 393 NDHEHSEPATYINAPLVGALAYLAHSY 313
ND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 183 NDYAHSEPTTYINAPLVGSLAYLAHSF 263
>gb|BF516953.1|BF516953 NXSI_007_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_007_C11 5' similar to Arabidopsis thaliana
sequence At4g02290 putative endo-1,4-beta glucanase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 566
Score = 151 bits (325), Expect = 3e-036
Identities = 61/93 (65%), Positives = 67/93 (72%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVG D
Sbjct: 283 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGXXDNN 462
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHS 316
D F DERND+ HSE TYINAP G AYLAHS
Sbjct: 463 DHFSDERNDYAHSEXXTYINAPXXGXXAYLAHS 561
>gb|DR072362.1|DR072362 RTDK1_25_G01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_25_G01_A029 5', mRNA sequence
Length = 654
Score = 151 bits (325), Expect = 3e-036
Identities = 59/86 (68%), Positives = 67/86 (77%)
Frame = -1 / +2
Query: 570 YPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDERN 391
+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD D F DERN
Sbjct: 2 FPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERN 181
Query: 390 DHEHSEPATYINAPLVGALAYLAHSY 313
D+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 182 DYAHSEPTTYINAPLVGSLAYLAHSF 259
>gb|AW870233.1|AW870233 NXNV_125_H06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_125_H06 5' similar to Arabidopsis thaliana
sequence At1g02800 endo-1,4-beta-glucanase precursor,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 286
Score = 149 bits (320), Expect = 2e-035
Identities = 58/86 (67%), Positives = 66/86 (76%)
Frame = -1 / +1
Query: 570 YPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDERN 391
+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD D F DERN
Sbjct: 1 FPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERN 180
Query: 390 DHEHSEPATYINAPLVGALAYLAHSY 313
D+ HSEP TYINAPL G+LAYLAHS+
Sbjct: 181 DYAHSEPXTYINAPLXGSLAYLAHSF 258
>gb|CF668810.1|CF668810 RTCNT1_38_G04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G04_A029 5', mRNA sequence
Length = 699
Score = 147 bits (316), Expect = 5e-035
Identities = 57/82 (69%), Positives = 63/82 (76%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGPD
Sbjct: 454 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNN 633
Query: 414 DRFPDERNDHEHSEPATYINAP 349
D F DERND+ HSEP TYINAP
Sbjct: 634 DHFSDERNDYAHSEPTTYINAP 699
>gb|CF668728.1|CF668728 RTCNT1_38_G04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G04_A029 3', mRNA sequence
Length = 782
Score = 81.7 bits (172), Expect(3) = 2e-034
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPN 454
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN
Sbjct: 89 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPN 229
Score = 73.9 bits (155), Expect(3) = 2e-034
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = -1 / +1
Query: 426 PDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
P D F DERND+ HSEP TYINAPLVG+LAYLAHS+
Sbjct: 259 PTXNDHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSF 372
Score = 28.1 bits (55), Expect(3) = 2e-034
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -1 / +3
Query: 450 LVGAVVGGPDMQ 415
LVGAVVGGPD Q
Sbjct: 234 LVGAVVGGPDXQ 269
>gb|DR072510.1|DR072510 RTDK1_26_F03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_26_F03_A029 5', mRNA sequence
Length = 655
Score = 141 bits (303), Expect = 3e-033
Identities = 56/91 (61%), Positives = 66/91 (72%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG ++P+ IHHR SSLPSV HP I C G ++ NPNLLVGAVVGGPD Q
Sbjct: 478 YMVGYGPRFPQYIHHRGSSLPSVTEHPNHITCKGGSQFFFSKNPNPNLLVGAVVGGPDSQ 299
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
D++PD R + SEP TYINAPLVGALA+ +
Sbjct: 298 DQYPDNRPNFRQSEPTTYINAPLVGALAFFS 206
>gb|BX680701.1|BX680701 BX680701 RS Pinus pinaster cDNA clone RS47D08, mRNA sequence
Length = 551
Score = 136 bits (291), Expect = 2e-031
Identities = 53/76 (69%), Positives = 60/76 (78%)
Frame = -1 / +3
Query: 549 RASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEP 370
R SSLPS+ HP +I C+ GF +LY+ G NPN+LVGAVVGGPD DRF DERND+ HSEP
Sbjct: 9 RGSSLPSIYNHPQKISCNDGFQSLYSNGPNPNILVGAVVGGPDHNDRFSDERNDYAHSEP 188
Query: 369 ATYINAPLVGALAYLA 322
TYINAP VG LAYLA
Sbjct: 189 TTYINAPFVGCLAYLA 236
>gb|BM134202.1|BM134202 NXLV_018_A05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_018_A05 5' similar to Arabidopsis thaliana
sequence At1g02800 endo-1,4-beta-glucanase precursor,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 392
Score = 135 bits (290), Expect = 2e-031
Identities = 55/91 (60%), Positives = 64/91 (70%)
Frame = -1 / +1
Query: 585 GYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRF 406
G GA + R + SLPS+ HP I ++GF +LY+ NPN LVGAVVGGPD D F
Sbjct: 13 GNGANFQNRXXQKGXSLPSIYNHPQIIPGNKGFNSLYSNAPNPNRLVGAVVGGPDNNDHF 192
Query: 405 PDERNDHEHSEPATYINAPLVGALAYLAHSY 313
DERND+ HSEP TYINAPLVG LAYLAHS+
Sbjct: 193 SDERNDYAHSEPTTYINAPLVGXLAYLAHSF 285
>gb|BF060615.1|BF060615 NXCI_118_B03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_118_B03 5' similar to Arabidopsis
thaliana sequence At1g02800 endo-1,4-beta-glucanase
precursor, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 343
Score = 134 bits (288), Expect = 4e-031
Identities = 52/80 (65%), Positives = 57/80 (71%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SLPS+ HP I C+ GF +LY NPN L GAVVG PD
Sbjct: 99 YMVGYGAKFPERIHHRGXSLPSIYQHPQIIPCNDGFQSLYXNAPNPNRLXGAVVGXPDNN 278
Query: 414 DRFPDERNDHEHSEPATYIN 355
D F DERND+ HSEP TYIN
Sbjct: 279 DHFSDERNDYAHSEPTTYIN 338
>gb|DR013159.1|DR013159 HEAT1_17_H11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_H11_A029 3', mRNA sequence
Length = 827
Score = 132 bits (283), Expect = 2e-030
Identities = 53/89 (59%), Positives = 64/89 (71%)
Frame = -1 / -3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG+ +P+ IHHR SSLPSV HP+ I C G ++ NPNLLVGAVVGGP+ +
Sbjct: 483 YMVGYGSGFPKYIHHRGSSLPSVTHHPSHITCKGGSQYFFSKSPNPNLLVGAVVGGPNTR 304
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAY 328
D++ D R SEP TYINAPLVGALA+
Sbjct: 303 DQYSDARTYFRQSEPTTYINAPLVGALAF 217
>gb|DR179146.1|DR179146 RTMNUT1_16_F11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_F11_A029 3', mRNA sequence
Length = 884
Score = 132 bits (283), Expect = 2e-030
Identities = 53/89 (59%), Positives = 64/89 (71%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG+ +P+ IHHR SSLPSV HP+ I C G ++ NPNLLVGAVVGGP+ +
Sbjct: 281 YMVGYGSGFPKYIHHRGSSLPSVTHHPSHITCKGGSQYFFSKSPNPNLLVGAVVGGPNTR 460
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAY 328
D++ D R SEP TYINAPLVGALA+
Sbjct: 461 DQYSDARTYFRQSEPTTYINAPLVGALAF 547
>gb|DR179224.1|DR179224 RTMNUT1_16_F11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_F11_A029 5', mRNA sequence
Length = 846
Score = 132 bits (283), Expect = 2e-030
Identities = 53/89 (59%), Positives = 64/89 (71%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG+ +P+ IHHR SSLPSV HP+ I C G ++ NPNLLVGAVVGGP+ +
Sbjct: 367 YMVGYGSGFPKYIHHRGSSLPSVTHHPSHITCKGGSQYFFSKSPNPNLLVGAVVGGPNTR 546
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAY 328
D++ D R SEP TYINAPLVGALA+
Sbjct: 547 DQYSDARTYFRQSEPTTYINAPLVGALAF 633
>gb|BE187293.1|BE187293 NXNV_162_B08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_162_B08 5' similar to Arabidopsis thaliana
sequence At1g23210 Hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 475
Score = 130 bits (278), Expect = 1e-029
Identities = 53/91 (58%), Positives = 63/91 (69%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG+ +P+RIHHRASSLPS+ HP I C G + NPNLL+GAVVG PD
Sbjct: 90 YMVGYGSSFPQRIHHRASSLPSMVDHPDFIACKNGSYYYNSNDPNPNLLIGAVVGXPDEY 269
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
+FPD R + S P TYINAPLVGALA+ +
Sbjct: 270 XQFPDYRPNFRESXPTTYINAPLVGALAFFS 362
>gb|DR099637.1|DR099637 STRR1_57_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_B05_A033 3', mRNA sequence
Length = 567
Score = 122 bits (262), Expect = 2e-027
Identities = 48/73 (65%), Positives = 54/73 (73%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAK+P RIHHR SSLPS+ HP I C+ GF +LY+ NPN LVGAVVGGP
Sbjct: 221 YMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPYNN 42
Query: 414 DRFPDERNDHEHS 376
D F DERND+ HS
Sbjct: 41 DHFSDERNDYAHS 3
>gb|DR011322.1|DR011322 HEAT1_5_B10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_B10_A029 3', mRNA sequence
Length = 558
Score = 120 bits (256), Expect = 1e-026
Identities = 47/69 (68%), Positives = 53/69 (76%)
Frame = -1 / +1
Query: 519 HPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVG 340
HP I C+ GF +LY+ NPN LVGAVVGGPD D F DERND+ H EP TYINAPLVG
Sbjct: 10 HPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERNDYAHFEPTTYINAPLVG 189
Query: 339 ALAYLAHSY 313
+LAYLAHS+
Sbjct: 190 SLAYLAHSF 216
>gb|DR163056.1|DR163056 RTFE1_24_H02.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_24_H02_A029 3', mRNA sequence
Length = 602
Score = 116 bits (249), Expect = 1e-025
Identities = 45/63 (71%), Positives = 51/63 (80%)
Frame = -1 / +2
Query: 501 CSQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLA 322
C+ GF +LY+ NPN LVGAVVGGPD D F DERND+ HSEP TYINAPLVG+LAYLA
Sbjct: 2 CNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 181
Query: 321 HSY 313
HS+
Sbjct: 182 HSF 190
>gb|CV035007.1|CV035007 RTNACL1_13_B12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_B12_A029 3', mRNA sequence
Length = 879
Score = 80.3 bits (169), Expect(2) = 7e-025
Identities = 31/48 (64%), Positives = 39/48 (81%)
Frame = -1 / -1
Query: 468 GANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
G++PN+L GA+VGGPD D F DERN++E +EPATY NAP+VG LA L
Sbjct: 579 GSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNAPIVGVLARL 436
Score = 53.3 bits (110), Expect(2) = 7e-025
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
YMVGYG+ YP+++HHRASS+ S + + C+ G++ Y+
Sbjct: 708 YMVGYGSNYPQQVHHRASSIVSYKVSRSFVTCTGGYSTWYS 586
>gb|DT631580.1|DT631580 EST1146511 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFA34 3' end, mRNA sequence
Length = 854
Score = 80.3 bits (169), Expect(2) = 7e-025
Identities = 31/48 (64%), Positives = 39/48 (81%)
Frame = -1 / +3
Query: 468 GANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
G++PN+L GA+VGGPD D F DERN++E +EPATY NAP+VG LA L
Sbjct: 477 GSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNAPIVGVLARL 620
Score = 53.3 bits (110), Expect(2) = 7e-025
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
YMVGYG+ YP+++HHRASS+ S + + C+ G++ Y+
Sbjct: 348 YMVGYGSNYPQQVHHRASSIVSYKVSRSFVTCTGGYSTWYS 470
>gb|DR683696.1|DR683696 EST1073772 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAK25 3' end, mRNA sequence
Length = 848
Score = 80.3 bits (169), Expect(2) = 7e-025
Identities = 31/48 (64%), Positives = 39/48 (81%)
Frame = -1 / +1
Query: 468 GANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
G++PN+L GA+VGGPD D F DERN++E +EPATY NAP+VG LA L
Sbjct: 469 GSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNAPIVGVLARL 612
Score = 53.3 bits (110), Expect(2) = 7e-025
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
YMVGYG+ YP+++HHRASS+ S + + C+ G++ Y+
Sbjct: 340 YMVGYGSNYPQQVHHRASSIVSYKVSRSFVTCTGGYSTWYS 462
>gb|DR683407.1|DR683407 EST1073483 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG79 3' end, mRNA sequence
Length = 702
Score = 80.3 bits (169), Expect(2) = 7e-025
Identities = 31/48 (64%), Positives = 39/48 (81%)
Frame = -1 / +3
Query: 468 GANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
G++PN+L GA+VGGPD D F DERN++E +EPATY NAP+VG LA L
Sbjct: 315 GSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNAPIVGVLARL 458
Score = 53.3 bits (110), Expect(2) = 7e-025
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
YMVGYG+ YP+++HHRASS+ S + + C+ G++ Y+
Sbjct: 186 YMVGYGSNYPQQVHHRASSIVSYKVSRSFVTCTGGYSTWYS 308
>gb|CF666852.1|CF666852 RTCNT1_26_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_C10_A029 5', mRNA sequence
Length = 630
Score = 111 bits (238), Expect = 3e-024
Identities = 44/62 (70%), Positives = 49/62 (79%)
Frame = -1 / +3
Query: 498 SQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAH 319
+ GF LY+ NPN LVGAVVGGPD D F DERND+ HSEP TYINAPLVG+LAYLAH
Sbjct: 6 NDGFQLLYSNAPNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLAH 185
Query: 318 SY 313
S+
Sbjct: 186 SF 191
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 292,591,218
Number of Sequences: 355925
Number of extensions: 3950150
Number of successful extensions: 58248
Number of sequences better than 1.0e-020: 70
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7923941220
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)