TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521353.2.1
(1279 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR024293.1|DR024293 STRS1_63_H03.g1_A034 Shoot tip pitch... 451 e-126
gb|DR684264.1|DR684264 EST1074341 Normalized pine embryo li... 401 e-111
gb|CF391743.1|CF391743 RTDR3_11_D09.g1_A022 Loblolly pine r... 384 e-106
gb|BG485767.1|BG485767 NXPV_038_F01_F NXPV (Nsf Xylem Plani... 335 5e-091
gb|DR688118.1|DR688118 EST1078202 Normalized pine embryo li... 299 2e-080
gb|DT634576.1|DT634576 EST1149507 Normalized pine embryo li... 243 2e-063
gb|AW011160.1|AW011160 ST17D08 Pine TriplEx shoot tip libra... 173 3e-042
gb|BX678940.1|BX678940 BX678940 RS Pinus pinaster cDNA clon... 139 4e-032
gb|DR684079.1|DR684079 EST1074156 Normalized pine embryo li... 137 1e-031
gb|DR688514.1|DR688514 EST1078598 Normalized pine embryo li... 135 5e-031
gb|CO160067.1|CO160067 FLD1_18_D09.b1_A029 Root flooded Pin... 134 1e-030
gb|DR692781.1|DR692781 EST1082869 Normalized pine embryo li... 133 3e-030
gb|DR688663.1|DR688663 EST1078748 Normalized pine embryo li... 132 5e-030
gb|DT634875.1|DT634875 EST1149806 Normalized pine embryo li... 132 5e-030
gb|DT637719.1|DT637719 EST1152650 Normalized pine embryo li... 131 1e-029
gb|AI812559.1|AI812559 12H4 Pine Lambda Zap Xylem library P... 130 2e-029
gb|DT634501.1|DT634501 EST1149432 Normalized pine embryo li... 127 2e-028
gb|DR687748.1|DR687748 EST1077830 Normalized pine embryo li... 127 2e-028
gb|DT630921.1|DT630921 EST1145852 Normalized pine embryo li... 110 2e-023
gb|AI813125.1|AI813125 23C2 Pine Lambda Zap Xylem library P... 109 5e-023
gb|AI813077.1|AI813077 20E1 Pine Lambda Zap Xylem library P... 103 2e-021
gb|AW064759.1|AW064759 ST35D12 Pine TriplEx shoot tip libra... 103 3e-021
>gb|DR024293.1|DR024293 STRS1_63_H03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_H03_A034 5', mRNA sequence
Length = 690
Score = 451 bits (980), Expect = e-126
Identities = 185/224 (82%), Positives = 203/224 (90%)
Frame = -3 / +2
Query: 962 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVWSKHFEWRIWASLVPIVGG 783
SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTV LQWLVW K F+ IW SLVPIVGG
Sbjct: 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVFLQWLVWRKAFDTHIWWSLVPIVGG 181
Query: 782 ILLTSVTELSFNIFGFCAAMVGCLATSTKTILAESLLHGYKFDSINTVYYMAPFATMILA 603
ILLTSVTELSFNIFGFCAA GCLATSTKTILAESLLHGYKFDSINTV+YMAPFATMILA
Sbjct: 182 ILLTSVTELSFNIFGFCAAFFGCLATSTKTILAESLLHGYKFDSINTVFYMAPFATMILA 361
Query: 602 LPAMVLEGGGVMNWFYTHDSIVPALTIILGSGVLAFCLNFSIFYVIHSTTAVTFNVAGNL 423
+PA++LEG GV++W T D++ L II GSG++AFCLNFSIFYVIHSTTAVTFNVAGN+
Sbjct: 362 VPALLLEGTGVLHWLETRDNVYGPLFIIFGSGIVAFCLNFSIFYVIHSTTAVTFNVAGNM 541
Query: 422 KVAVAVLVSWSIFRNPISAMNAIGCGITLVGCTFYGYVRHLISQ 291
KVAVA++VSW IFRNPIS +NA+GC ITL+GCTFYGYVRH +SQ
Sbjct: 542 KVAVAIMVSWLIFRNPISLLNAVGCAITLLGCTFYGYVRHKLSQ 673
Score = 289 bits (626), Expect = 2e-077
Identities = 139/220 (63%), Positives = 157/220 (71%)
Frame = +1 / -1
Query: 304 CLT*P*KVQPTRVIPHPIAFIAEIGFRKIDHDXXXXXXXXXXXXXXNVTAVVEWMT*KME 483
CLT P*KVQP RVI HP AF +IG R I HD VTAVVE +T*K+E
Sbjct: 660 CLTYP*KVQPKRVIAHPTAFKRDIGLRNISHDTIIATATFIFPATLKVTAVVE*IT*KIE 481
Query: 484 KLRQNASTPEPRMIVSAGTMESCV*NQFITPPPSSTIAGRASIMVAKGAM*YTVLMLSNL 663
K RQ A+ PEP +I S V NQ TP PS + AG A+I+VAKGA+* TV MLSNL
Sbjct: 480 KFRQKATMPEPNIINKGP*TLSRVSNQCKTPVPSRSKAGTANIIVAKGAI*NTVFMLSNL 301
Query: 664 YPWSRDSAKMVFVDVARQPTMAAQKPKMLKLSSVTEVRSIPPTIGTSEAHMRHSKCLLQT 843
YP S+ SA++VFV+VAR P AAQKPK+LKLSSVTEVR +PPTIGT + HM SK L T
Sbjct: 300 YP*SKLSARIVFVEVARHPKKAAQKPKILKLSSVTEVRRMPPTIGTRDHHMCVSKAFLHT 121
Query: 844 SHCRITVVAGVKDLIVCMKETGM*RKLTFPSTMFMQKTKD 963
SH R TVVAGVKDLIVCMKETGM*R+LTFPST+ MQKT D
Sbjct: 120 SH*RNTVVAGVKDLIVCMKETGM*RRLTFPSTILMQKTND 1
Score = 133 bits (285), Expect(2) = 2e-041
Identities = 57/133 (42%), Positives = 83/133 (62%)
Frame = +3 / -3
Query: 561 PVHYTSSFKHHRW*SQYHGGKGCHVVHRVNAVKLVSME*GLCQDGLCRRSQAANHGSTET 740
PV TS F+ QYH K CH+ + + A+K +SM+ LC++ C S+A G ET
Sbjct: 403 PVQDTSPFEK*SRNGQYHSRKRCHIKYSIYAIKFISMKQTLCKNCFC*SSKAPKEGCAET 224
Query: 741 ENVEAKLCHRSQEYSANYRDQRSPYAPLEMLAPD*PLQNNCGCRSERFDCLHEGDWDVAQ 920
+N+E K C+RS++ + YR Q PY ++ L+P *PL+ C RS+RF+CLHE + V Q
Sbjct: 223 KNIETKFCNRSKKNATYYRYQGPPYVCIKSLSPH*PLKKYCCSRSKRFNCLHERNRYVTQ 44
Query: 921 ADISQHNVYAEDE 959
A I QHN+ A+D+
Sbjct: 43 AHIPQHNIDAKDK 5
Score = 114 bits (244), Expect(2) = 2e-029
Identities = 56/135 (41%), Positives = 80/135 (59%)
Frame = -2 / +1
Query: 963 VLRLLHKHCAGKCQLALHPSLLHADNQIFHSCNHSYSAVASLEQAFRVAHMGFAGPYSWR 784
V+ LLH++CAG+C+ ALH HADN IF+SC +S S++AS+E+ F HM G YS
Sbjct: 1 VICLLHQYCAGECEPALHTCFFHADN*IFYSCYNSISSMASVEKGF*YTHMVVPGTYSRW 180
Query: 783 NTPDFGDRA*LQHFRFLCCHGWLPGYVYKDHLGRVPTPWIQV*QH*HGVLHGTLCHHDTG 604
++ F R * Q+F FL W+P Y K++ R WI +* H + +L+GT C +D G
Sbjct: 181 HSSYFCYRT*FQYFWFLRSLLWVPCYFNKNNSCREFASWI*I**HKYCILYGTFCDYDIG 360
Query: 603 STSDGA*RRRCNELV 559
+ + R C LV
Sbjct: 361 RSGFTSRRDWCLALV 405
Score = 57.0 bits (118), Expect(2) = 2e-041
Identities = 26/79 (32%), Positives = 47/79 (59%)
Frame = +3 / -3
Query: 276 GCSLALRDQMPHIAIESATNQGDSTPDCIHCRDWIPEDRPRH*HCHRDFKVACNVERHCC 455
G S LR + HI+IESAT +G+ T CI WI + +P + +C+ + CN+E +
Sbjct: 688 GLSYILR*LVSHISIESAT*KGNRTSYCI*EGYWIAKYKP*YHNCNCHLHIPCNIESNGS 509
Query: 456 C*MDDVEDGEVKAERKHPR 512
C +++++D +V+ + + R
Sbjct: 508 CRVNNIKDRKVQTKGNYAR 452
Score = 38.6 bits (78), Expect(2) = 2e-029
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = -2 / +1
Query: 387 LPESNLCNECNRVWNHPGWLHFLWLCEASDLA 292
+ +SN+ +C+R+ ++P LHFLW+CE ++
Sbjct: 577 ISQSNIPLKCSRMCDYPFRLHFLWICETQAIS 672
>gb|DR684264.1|DR684264 EST1074341 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAQ72 3' end, mRNA sequence
Length = 764
Score = 401 bits (870), Expect = e-111
Identities = 163/190 (85%), Positives = 174/190 (91%)
Frame = -3 / +3
Query: 1184 RAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYIAIHVLKAKPLI 1005
RA+ A+LQWW FNV VII NKWIFQKLDFKFPL+VSCVHFICS++G+YIAI V K KPLI
Sbjct: 195 RALFAVLQWWCFNVAVIITNKWIFQKLDFKFPLSVSCVHFICSAVGSYIAIKVFKVKPLI 374
Query: 1004 QVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVWSKHF 825
+V+P D W+RIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTV LQWLVW K F
Sbjct: 375 EVDPVDLWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVFLQWLVWRKAF 554
Query: 824 EWRIWASLVPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTILAESLLHGYKFDSIN 645
+ RIW SLVPIVGGILLTSVTELSFNIFGFCAA GCLATSTKTILAESLLHGYKFDSIN
Sbjct: 555 DTRIWWSLVPIVGGILLTSVTELSFNIFGFCAAFFGCLATSTKTILAESLLHGYKFDSIN 734
Query: 644 TVYYMAPFAT 615
TV+YMAPFAT
Sbjct: 735 TVFYMAPFAT 764
Score = 288 bits (624), Expect = 4e-077
Identities = 133/194 (68%), Positives = 151/194 (77%)
Frame = +1 / -2
Query: 616 VAKGAM*YTVLMLSNLYPWSRDSAKMVFVDVARQPTMAAQKPKMLKLSSVTEVRSIPPTI 795
VAKGA+* TV MLSNLYP S+ SA++VFV+VAR P AAQKPK+LKLSSVTEVR +PPTI
Sbjct: 763 VAKGAI*NTVFMLSNLYP*SKLSARIVFVEVARHPKKAAQKPKILKLSSVTEVRRMPPTI 584
Query: 796 GTSEAHMRHSKCLLQTSHCRITVVAGVKDLIVCMKETGM*RKLTFPSTMFMQKTKDIGNI 975
GT + HMR SK L TSH R TVVAGVKDLIVCMKETGM*R+LTFPST+ MQKT D+G I
Sbjct: 583 GTRDHHMRVSKAFLHTSH*RNTVVAGVKDLIVCMKETGM*RRLTFPSTILMQKTNDMGKI 404
Query: 976 LFQRSSGST*IRGFALRTWIAM*APMEEQMKWTQDTVRGNLKSSFWKIHLFMMMTVTLKP 1155
QRS+GST I GF L+T IA+ P E MK T DT RGNLKS+F KIHLF++MT TLK
Sbjct: 403 RLQRSTGSTSINGFTLKTLIAIYDPTAEHMKCTHDTDRGNLKSNF*KIHLFVIMTATLKH 224
Query: 1156 HHWRMASTARRVPR 1197
HH A +AR R
Sbjct: 223 HHCSTAKSARATLR 182
Score = 185 bits (399), Expect = 5e-046
Identities = 78/182 (42%), Positives = 121/182 (66%)
Frame = +3 / -1
Query: 621 KGCHVVHRVNAVKLVSME*GLCQDGLCRRSQAANHGSTETENVEAKLCHRSQEYSANYRD 800
K CH+ + + A+K +SM+ LC++ C S+A G ET+N+E K C+RS++ + +YR
Sbjct: 758 KRCHIKYSIYAIKFISMKQTLCKNCFC*SSKAPKEGCAETKNIETKFCNRSKKNATHYRY 579
Query: 801 QRSPYAPLEMLAPD*PLQNNCGCRSERFDCLHEGDWDVAQADISQHNVYAEDEGHWKYPF 980
Q PYA ++ L+P *PL+ C RS+RF+CLHE + V QA I QHN+ A+D+ H + P
Sbjct: 578 QGPPYACIKSLSPH*PLKKYCCSRSKRFNCLHERNRYVTQAHIPQHNIDAKDK*HGENPP 399
Query: 981 PAVLRFNLNQGFRLEDMDCNVSSNGRADEVDAGHGERELEIQFLEDPLVHDDDSDVEAPP 1160
P + N NQ L++ +CN+ + A EV + +R+ E+QFL+DPLV ++DS++EAPP
Sbjct: 398 PEINWINFNQWLHLKNFNCNI*PHC*AYEVYT*Y*QRKFEVQFLKDPLVRNNDSNIEAPP 219
Query: 1161 LE 1166
L+
Sbjct: 218 LQ 213
Score = 157 bits (337), Expect = 2e-037
Identities = 77/181 (42%), Positives = 109/181 (60%)
Frame = -2 / +2
Query: 1161 VVGLQRHCHHHEQVDLPETGFQVPSHRVLRPLHLLFHWSLHCNPCPQGETPDSS*TGGPL 982
+V LQ CH++EQVDL E G Q+ S ++ LH+L ++CN GE D S*+ L
Sbjct: 218 MVVLQCCCHYYEQVDLSEIGLQISSVSIMCTLHMLSSGVIYCN*SF*GEAID*S*SS*SL 397
Query: 981 EKDISNVLRLLHKHCAGKCQLALHPSLLHADNQIFHSCNHSYSAVASLEQAFRVAHMGFA 802
E D +V+ LLH++CAG+C+ ALH HADN IF+SC +S S++AS+E+ F HM
Sbjct: 398 EADFPHVICLLHQYCAGECEPALHTCFFHADN*IFYSCYNSISSMASVEKGF*YTHMVVP 577
Query: 801 GPYSWRNTPDFGDRA*LQHFRFLCCHGWLPGYVYKDHLGRVPTPWIQV*QH*HGVLHGTL 622
G YS ++ F R * Q+F FL W+P Y K++ R WI +* H + +L+GT
Sbjct: 578 GTYSGWHSSYFCYRT*FQYFWFLRSLLWVPCYFNKNNSCREFASWI*I**HKYCILYGTF 757
Query: 621 C 619
C
Sbjct: 758 C 760
>gb|CF391743.1|CF391743 RTDR3_11_D09.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_11_D09_A022 5', mRNA
sequence
Length = 757
Score = 384 bits (832), Expect = e-106
Identities = 156/183 (85%), Positives = 167/183 (91%)
Frame = -3 / +2
Query: 1184 RAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYIAIHVLKAKPLI 1005
RA+ A+LQWW FNV VII NKWIFQKLDFKFPL+VSCVHFICS++G+YIAI V K KPLI
Sbjct: 209 RALFAVLQWWCFNVAVIITNKWIFQKLDFKFPLSVSCVHFICSAVGSYIAIKVFKVKPLI 388
Query: 1004 QVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVWSKHF 825
+V+P D W+RIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTV LQWLVW K F
Sbjct: 389 EVDPVDLWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVFLQWLVWRKAF 568
Query: 824 EWRIWASLVPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTILAESLLHGYKFDSIN 645
+ RIW SLVPIVGGILLTSVTELSFNIFGFCAA GCLATSTKTILAESLLHGYKFDSIN
Sbjct: 569 DTRIWWSLVPIVGGILLTSVTELSFNIFGFCAAFFGCLATSTKTILAESLLHGYKFDSIN 748
Query: 644 TVY 636
TV+
Sbjct: 749 TVF 757
Score = 278 bits (601), Expect = 7e-074
Identities = 127/186 (68%), Positives = 144/186 (77%)
Frame = +1 / -2
Query: 640 TVLMLSNLYPWSRDSAKMVFVDVARQPTMAAQKPKMLKLSSVTEVRSIPPTIGTSEAHMR 819
TV MLSNLYP S+ SA++VFV+VAR P AAQKPK+LKLSSVTEVR +PPTIGT + HMR
Sbjct: 753 TVFMLSNLYP*SKLSARIVFVEVARHPKKAAQKPKILKLSSVTEVRRMPPTIGTRDHHMR 574
Query: 820 HSKCLLQTSHCRITVVAGVKDLIVCMKETGM*RKLTFPSTMFMQKTKDIGNILFQRSSGS 999
SK L TSH R TVVAGVKDLIVCMKETGM*R+LTFPST+ MQKT D+G I QRS+GS
Sbjct: 573 VSKAFLHTSH*RNTVVAGVKDLIVCMKETGM*RRLTFPSTILMQKTNDMGKIRLQRSTGS 394
Query: 1000 T*IRGFALRTWIAM*APMEEQMKWTQDTVRGNLKSSFWKIHLFMMMTVTLKPHHWRMAST 1179
T I GF L+T IA+ P E MK T DT RGNLKS+F KIHLF++MT TLK HH A +
Sbjct: 393 TSINGFTLKTLIAIYDPTAEHMKCTHDTDRGNLKSNF*KIHLFVIMTATLKHHHCSTAKS 214
Query: 1180 ARRVPR 1197
AR R
Sbjct: 213 ARATLR 196
Score = 174 bits (375), Expect = 1e-042
Identities = 75/176 (42%), Positives = 116/176 (65%)
Frame = +3 / -1
Query: 639 HRVNAVKLVSME*GLCQDGLCRRSQAANHGSTETENVEAKLCHRSQEYSANYRDQRSPYA 818
+ + A+K +SM+ LC++ C S+A G ET+N+E K C+RS++ + YR Q PYA
Sbjct: 754 YSIYAIKFISMKQTLCKNCFC*SSKAPKEGCAETKNIETKFCNRSKKNATYYRYQGPPYA 575
Query: 819 PLEMLAPD*PLQNNCGCRSERFDCLHEGDWDVAQADISQHNVYAEDEGHWKYPFPAVLRF 998
++ L+P *PL+ C RS+RF+CLHE + V QA I QHN+ A+D+ H + P P +
Sbjct: 574 CIKSLSPH*PLKKYCCSRSKRFNCLHERNRYVTQAHIPQHNIDAKDK*HGENPPPEINWI 395
Query: 999 NLNQGFRLEDMDCNVSSNGRADEVDAGHGERELEIQFLEDPLVHDDDSDVEAPPLE 1166
N NQ L++ +CN+ + A EV + +R+ E+QFL+DPLV ++DS++EAPPL+
Sbjct: 394 NFNQWLHLKNFNCNI*PHC*AYEVYT*Y*QRKFEVQFLKDPLVRNNDSNIEAPPLQ 227
Score = 145 bits (312), Expect = 5e-034
Identities = 73/171 (42%), Positives = 102/171 (59%)
Frame = -2 / +1
Query: 1161 VVGLQRHCHHHEQVDLPETGFQVPSHRVLRPLHLLFHWSLHCNPCPQGETPDSS*TGGPL 982
+V LQ CH++EQVDL E G Q+ S ++ LH+L ++CN GE D S*+ L
Sbjct: 232 MVVLQCCCHYYEQVDLSEIGLQISSVSIMCTLHMLSSGVIYCN*SF*GEAID*S*SS*SL 411
Query: 981 EKDISNVLRLLHKHCAGKCQLALHPSLLHADNQIFHSCNHSYSAVASLEQAFRVAHMGFA 802
E D +V+ LLH++CAG+C+ ALH HADN IF+SC +S S++AS+E+ F HM
Sbjct: 412 EADFPHVICLLHQYCAGECEPALHTCFFHADN*IFYSCYNSISSMASVEKGF*YTHMVVP 591
Query: 801 GPYSWRNTPDFGDRA*LQHFRFLCCHGWLPGYVYKDHLGRVPTPWIQV*QH 649
G YS ++ F R * Q+F FL W+P Y K++ R WI +* H
Sbjct: 592 GTYSRWHSSYFCYRT*FQYFWFLRSLLWVPCYFNKNNSCREFASWI*I**H 744
>gb|BG485767.1|BG485767 NXPV_038_F01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_038_F01 5' similar to Arabidopsis
thaliana sequence At1g77610 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 535
Score = 335 bits (725), Expect = 5e-091
Identities = 138/172 (80%), Positives = 153/172 (88%)
Frame = -3 / +2
Query: 806 SLVPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTILAESLLHGYKFDSINTVYYMA 627
SLVPIVGGILLTSVTELSFNIFGFCAA GCLATSTKTILAESLLHGYKFDSINTV+YMA
Sbjct: 2 SLVPIVGGILLTSVTELSFNIFGFCAAFFGCLATSTKTILAESLLHGYKFDSINTVFYMA 181
Query: 626 PFATMILALPAMVLEGGGVMNWFYTHDSIVPALTIILGSGVLAFCLNFSIFYVIHSTTAV 447
PFATMILA+PA++LEG GV++W T D++ L II GSG++AFCLNFSIFYVIHSTTAV
Sbjct: 182 PFATMILAVPALLLEGTGVLHWLETRDNVYGPLFIIFGSGIVAFCLNFSIFYVIHSTTAV 361
Query: 446 TFNVAGNLKVAVAVLVSWSIFRNPISAMNAIGCGITLVGCTFYGYVRHLISQ 291
TFNVAGN+KVAVA++VSW IFRNPIS +NA C ITL CTFYGYVRH +SQ
Sbjct: 362 TFNVAGNMKVAVAIMVSWLIFRNPISLLNAXXCAITLXXCTFYGYVRHKLSQ 517
Score = 188 bits (405), Expect = 7e-047
Identities = 95/168 (56%), Positives = 111/168 (66%)
Frame = +1 / -2
Query: 304 CLT*P*KVQPTRVIPHPIAFIAEIGFRKIDHDXXXXXXXXXXXXXXNVTAVVEWMT*KME 483
CLT P*KV RVI AF +IG R I HD VTAVVE +T*K+E
Sbjct: 504 CLTYP*KVXXXRVIAXXXAFKRDIGLRNISHDTIIATATFIFPATLKVTAVVE*IT*KIE 325
Query: 484 KLRQNASTPEPRMIVSAGTMESCV*NQFITPPPSSTIAGRASIMVAKGAM*YTVLMLSNL 663
K RQ A+ PEP +I S V NQ TP PS + AG A+I+VAKGA+* TV MLSNL
Sbjct: 324 KFRQKATMPEPNIINKGP*TLSRVSNQCKTPVPSRSKAGTANIIVAKGAI*NTVFMLSNL 145
Query: 664 YPWSRDSAKMVFVDVARQPTMAAQKPKMLKLSSVTEVRSIPPTIGTSE 807
YP S+ SA++VFV+VAR P AAQKPK+LKLSSVTEVR +PPTIGT +
Sbjct: 144 YP*SKLSARIVFVEVARHPKKAAQKPKILKLSSVTEVRRMPPTIGTRD 1
Score = 78.0 bits (164), Expect(2) = 8e-024
Identities = 32/81 (39%), Positives = 49/81 (60%)
Frame = +3 / -1
Query: 561 PVHYTSSFKHHRW*SQYHGGKGCHVVHRVNAVKLVSME*GLCQDGLCRRSQAANHGSTET 740
PV TS F+ QYH K CH+ + + A+K +SM+ LC++ C S+A G ET
Sbjct: 247 PVQDTSPFEK*SRNGQYHSRKRCHIKYSIYAIKFISMKQTLCKNCFC*SSKAPKEGCAET 68
Query: 741 ENVEAKLCHRSQEYSANYRDQ 803
+N+E K C+RS++ + +YR Q
Sbjct: 67 KNIETKFCNRSKKNATHYRYQ 5
Score = 53.3 bits (110), Expect(2) = 8e-024
Identities = 23/74 (31%), Positives = 44/74 (59%)
Frame = +3 / -1
Query: 291 LRDQMPHIAIESATNQGDSTPDCIHCRDWIPEDRPRH*HCHRDFKVACNVERHCCC*MDD 470
LR + HI+IESA +G+ T CI WI + +P + +C+ + CN+E + C +++
Sbjct: 517 LR*LVSHISIESAXXKGNRTXXCI*EGYWIAKYKP*YHNCNCHLHIPCNIESNGSCRVNN 338
Query: 471 VEDGEVKAERKHPR 512
++D +V+ + + R
Sbjct: 337 IKDRKVQTKGNYAR 296
>gb|DR688118.1|DR688118 EST1078202 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC091 3' end, mRNA sequence
Length = 800
Score = 299 bits (648), Expect = 2e-080
Identities = 121/147 (82%), Positives = 131/147 (89%)
Frame = -3 / +2
Query: 1184 RAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYIAIHVLKAKPLI 1005
RA+ +LQWW NV VII NKWIFQKLDFKFPL+VSCVHFICS++G+YIAI V K KPLI
Sbjct: 359 RALFVVLQWWCLNVAVIITNKWIFQKLDFKFPLSVSCVHFICSAVGSYIAIKVFKVKPLI 538
Query: 1004 QVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVWSKHF 825
+V+P D W+RIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTV LQWLVW K F
Sbjct: 539 EVDPVDLWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVFLQWLVWRKAF 718
Query: 824 EWRIWASLVPIVGGILLTSVTELSFNI 744
+ RIW SLVPIVGGILLTSVTELSFNI
Sbjct: 719 DTRIWWSLVPIVGGILLTSVTELSFNI 799
Score = 220 bits (475), Expect = 2e-056
Identities = 100/151 (66%), Positives = 114/151 (75%)
Frame = +1 / -3
Query: 745 MLKLSSVTEVRSIPPTIGTSEAHMRHSKCLLQTSHCRITVVAGVKDLIVCMKETGM*RKL 924
+LKLSSVTEVR +PPTIGT + HMR SK L TSH R TVVAGVKDLIVCMKETGM*R+L
Sbjct: 798 ILKLSSVTEVRRMPPTIGTRDHHMRVSKAFLHTSH*RNTVVAGVKDLIVCMKETGM*RRL 619
Query: 925 TFPSTMFMQKTKDIGNILFQRSSGST*IRGFALRTWIAM*APMEEQMKWTQDTVRGNLKS 1104
TFPST+ MQKT D+G I QRS+GST I GF L+T IA+ P E MK T DT RGNLKS
Sbjct: 618 TFPSTILMQKTNDMGKIRLQRSTGSTSINGFTLKTLIAIYDPTAEHMKCTHDTDRGNLKS 439
Query: 1105 SFWKIHLFMMMTVTLKPHHWRMASTARRVPR 1197
+F KIHLF++MT TL+ HH +AR R
Sbjct: 438 NF*KIHLFVIMTATLRHHHCSTTKSARATLR 346
Score = 149 bits (321), Expect = 3e-035
Identities = 64/141 (45%), Positives = 96/141 (68%)
Frame = +3 / -2
Query: 744 NVEAKLCHRSQEYSANYRDQRSPYAPLEMLAPD*PLQNNCGCRSERFDCLHEGDWDVAQA 923
N+E K C+RS++ + +YR Q PYA ++ L+P *PL+ C RS+RF+CLHE + V QA
Sbjct: 799 NIETKFCNRSKKNATHYRYQGPPYACIKSLSPH*PLKKYCCSRSKRFNCLHERNRYVTQA 620
Query: 924 DISQHNVYAEDEGHWKYPFPAVLRFNLNQGFRLEDMDCNVSSNGRADEVDAGHGERELEI 1103
I QHN+ A+DE H + P P + N NQ L++ +CN+ + A EV + +R+ E+
Sbjct: 619 HIPQHNIDAKDE*HGENPPPEINWINFNQWLHLKNFNCNI*PHC*AYEVYT*Y*QRKFEV 440
Query: 1104 QFLEDPLVHDDDSDVEAPPLE 1166
QFL+DPLV ++DS++EAPPL+
Sbjct: 439 QFLKDPLVRNNDSNIEAPPLQ 377
Score = 128 bits (275), Expect = 6e-029
Identities = 59/132 (44%), Positives = 83/132 (62%)
Frame = -2 / +1
Query: 1140 CHHHEQVDLPETGFQVPSHRVLRPLHLLFHWSLHCNPCPQGETPDSS*TGGPLEKDISNV 961
CH++EQVDL E G Q+ S ++ LH+L ++CN GE D S*+ LE D +V
Sbjct: 403 CHYYEQVDLSEIGLQISSVSIMCTLHMLSSGVIYCN*SF*GEAID*S*SS*SLEADFPHV 582
Query: 960 LRLLHKHCAGKCQLALHPSLLHADNQIFHSCNHSYSAVASLEQAFRVAHMGFAGPYSWRN 781
+RLLH++CAG+C+ ALH HADN IF+SC +S S++AS+E+ F HM G YS +
Sbjct: 583 IRLLHQYCAGECEPALHTCFFHADN*IFYSCYNSISSMASVEKGF*YTHMVVPGTYSGWH 762
Query: 780 TPDFGDRA*LQH 745
+ F R * Q+
Sbjct: 763 SSYFCYRT*FQY 798
>gb|DT634576.1|DT634576 EST1149507 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG748 3' end, mRNA sequence
Length = 715
Score = 243 bits (525), Expect = 2e-063
Identities = 95/116 (81%), Positives = 104/116 (89%)
Frame = -3 / +1
Query: 1184 RAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYIAIHVLKAKPLI 1005
RA+ +LQWW NV VII NKWIFQKLDFKFPL+VSCVHFICS++G+YIAI V K KPLI
Sbjct: 367 RALFVVLQWWCLNVAVIITNKWIFQKLDFKFPLSVSCVHFICSAVGSYIAIKVFKVKPLI 546
Query: 1004 QVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVW 837
+V+P D W+RIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTV LQWLVW
Sbjct: 547 EVDPVDLWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVFLQWLVW 714
Score = 171 bits (369), Expect = 7e-042
Identities = 78/119 (65%), Positives = 89/119 (74%)
Frame = +1 / -3
Query: 841 TSHCRITVVAGVKDLIVCMKETGM*RKLTFPSTMFMQKTKDIGNILFQRSSGST*IRGFA 1020
TSH R TVVAGVKDLIVCMKETGM*R+LTFPST+ MQKT D+G I QRS+GST I GF
Sbjct: 710 TSH*RNTVVAGVKDLIVCMKETGM*RRLTFPSTILMQKTNDMGKIRLQRSTGSTSINGFT 531
Query: 1021 LRTWIAM*APMEEQMKWTQDTVRGNLKSSFWKIHLFMMMTVTLKPHHWRMASTARRVPR 1197
L+T IA+ P E MK T DT RGNLKS+F KIHLF++MT TL+ HH +AR R
Sbjct: 530 LKTLIAIYDPTAEHMKCTHDTDRGNLKSNF*KIHLFVIMTATLRHHHCSTTKSARATLR 354
Score = 116 bits (248), Expect = 3e-025
Identities = 51/110 (46%), Positives = 74/110 (67%)
Frame = +3 / -2
Query: 837 PD*PLQNNCGCRSERFDCLHEGDWDVAQADISQHNVYAEDEGHWKYPFPAVLRFNLNQGF 1016
P *PL+ C RS+RF+CLHE + V QA I QHN+ A+DE H + P P + N NQ
Sbjct: 714 PH*PLKKYCCSRSKRFNCLHERNRYVTQAHIPQHNIDAKDE*HGENPPPEINWINFNQWL 535
Query: 1017 RLEDMDCNVSSNGRADEVDAGHGERELEIQFLEDPLVHDDDSDVEAPPLE 1166
L++ +CN+ + A EV + +R+ E+QFL+DPLV ++DS++EAPPL+
Sbjct: 534 HLKNFNCNI*PHC*AYEVYT*Y*QRKFEVQFLKDPLVRNNDSNIEAPPLQ 385
Score = 111 bits (238), Expect = 8e-024
Identities = 48/101 (47%), Positives = 68/101 (67%)
Frame = -2 / +3
Query: 1140 CHHHEQVDLPETGFQVPSHRVLRPLHLLFHWSLHCNPCPQGETPDSS*TGGPLEKDISNV 961
CH++EQVDL E G Q+ S ++ LH+L ++CN GE D S*+ LE D +V
Sbjct: 411 CHYYEQVDLSEIGLQISSVSIMCTLHMLSSGVIYCN*SF*GEAID*S*SS*SLEADFPHV 590
Query: 960 LRLLHKHCAGKCQLALHPSLLHADNQIFHSCNHSYSAVASL 838
+RLLH++CAG+C+ ALH HADN IF+SC +S S++AS+
Sbjct: 591 IRLLHQYCAGECEPALHTCFFHADN*IFYSCYNSISSMASV 713
>gb|AW011160.1|AW011160 ST17D08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST17D08, mRNA sequence
Length = 595
Score = 173 bits (372), Expect = 3e-042
Identities = 68/88 (77%), Positives = 79/88 (89%)
Frame = -3 / +3
Query: 554 THDSIVPALTIILGSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWSIFRNP 375
T D++ L IILGSG++AFCLNFSIFYVIHSTTAVTFNVAGN+KVAVA++VSW IFRNP
Sbjct: 12 TRDNVYGPLFIILGSGIVAFCLNFSIFYVIHSTTAVTFNVAGNMKVAVAIMVSWLIFRNP 191
Query: 374 ISAMNAIGCGITLVGCTFYGYVRHLISQ 291
IS +NA+GC ITL+GCTFYGYVRH +SQ
Sbjct: 192 ISLLNAVGCAITLLGCTFYGYVRHKLSQ 275
>gb|BX678940.1|BX678940 BX678940 RS Pinus pinaster cDNA clone RS17C06, mRNA sequence
Length = 262
Score = 139 bits (298), Expect = 4e-032
Identities = 54/65 (83%), Positives = 61/65 (93%)
Frame = -3 / +3
Query: 485 FSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWSIFRNPISAMNAIGCGITLVGCTFYGYVR 306
FSIFYVIHSTTAVTFNVAGN+KVAVA++VSW IFRNPIS +NA+GC ITL+GCTFYGYVR
Sbjct: 3 FSIFYVIHSTTAVTFNVAGNMKVAVAIMVSWLIFRNPISLLNAVGCAITLLGCTFYGYVR 182
Query: 305 HLISQ 291
H +SQ
Sbjct: 183 HKLSQ 197
>gb|DR684079.1|DR684079 EST1074156 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO66 3' end, mRNA sequence
Length = 827
Score = 137 bits (294), Expect = 1e-031
Identities = 58/183 (31%), Positives = 104/183 (56%)
Frame = -3 / +1
Query: 1220 DGGKAPAGLGTLRAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAY 1041
+G A +L V + W+ N+ VI++NK++ F+FPL ++ H S+ +Y
Sbjct: 106 EGLAGQAMASSLFTVGLVGAWFSSNIGVILLNKYLLSNYGFRFPLFLTMCHMTACSLLSY 285
Query: 1040 IAIHVLKAKPLIQVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATT 861
+ I K P+ + +++ +I +S +FC ++V GN+SLR++PVSF Q + + TP T
Sbjct: 286 LIIVWFKMVPMQPIRSREQFTKIATLSAIFCASVVGGNISLRFLPVSFNQAVGATTPFFT 465
Query: 860 VILQWLVWSKHFEWRIWASLVPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTILAE 681
+ +L+ K W + +LVP+V G+++ S E SF+++GF ++ A + KT+L
Sbjct: 466 AVFAFLITVKREAWLTYLTLVPVVAGVIIASGGEPSFHLYGFIVCILATAARALKTVLQG 645
Query: 680 SLL 672
LL
Sbjct: 646 ILL 654
>gb|DR688514.1|DR688514 EST1078598 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC724 3' end, mRNA sequence
Length = 903
Score = 135 bits (290), Expect = 5e-031
Identities = 59/182 (32%), Positives = 102/182 (56%)
Frame = -3 / +2
Query: 1217 GGKAPAGLGTLRAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYI 1038
G K PA G L I W+ N+ V+++NK++ FK+P+ ++ H ++ +Y+
Sbjct: 251 GSKLPAMKGRLFTFGLISSWYFSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACALLSYV 430
Query: 1037 AIHVLKAKPLIQVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTV 858
I LK P+ + + +I +S +F ++V GN+SLR++PVSF Q + + TP T
Sbjct: 431 GIAWLKLAPMQTIRSRSQLLKIAALSVIFSTSVVGGNISLRFLPVSFNQAVGATTPFFTT 610
Query: 857 ILQWLVWSKHFEWRIWASLVPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTILAES 678
+ +LV K W +A+LVP+V G+++ S E SF+++GF + A + K++L
Sbjct: 611 LFAYLVTFKREAWITYATLVPVVAGVVIASGGEPSFHLYGFIMCIGATAARALKSVLQGI 790
Query: 677 LL 672
LL
Sbjct: 791 LL 796
>gb|CO160067.1|CO160067 FLD1_18_D09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_18_D09_A029 3', mRNA sequence
Length = 772
Score = 134 bits (287), Expect = 1e-030
Identities = 57/177 (32%), Positives = 100/177 (56%)
Frame = -3 / -2
Query: 1217 GGKAPAGLGTLRAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYI 1038
G K PA G L I W+ N+ V+++NK++ FK+P+ ++ H ++ +Y+
Sbjct: 531 GSKLPAMKGRLFTFGLISSWYFSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACALLSYV 352
Query: 1037 AIHVLKAKPLIQVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTV 858
I LK P+ + + +I +S +F ++V GN+SLR++PVSF Q + + TP T
Sbjct: 351 GIAWLKLAPMQTIRSRSQLLKIAALSVIFSTSVVGGNISLRFLPVSFNQAVGATTPFFTA 172
Query: 857 ILQWLVWSKHFEWRIWASLVPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTIL 687
+ +LV K W +A+LVP+V G+++ S E SF+++GF + A + K++L
Sbjct: 171 LFAYLVTFKREAWITYATLVPVVAGVVIASGGEPSFHLYGFIMCIGATAARALKSVL 1
>gb|DR692781.1|DR692781 EST1082869 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADQ31 3' end, mRNA sequence
Length = 785
Score = 133 bits (285), Expect = 3e-030
Identities = 57/177 (32%), Positives = 100/177 (56%)
Frame = -3 / +1
Query: 1217 GGKAPAGLGTLRAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYI 1038
G K PA G L I W+ N+ V+++NK++ FK+P+ ++ H ++ +Y+
Sbjct: 247 GPKLPAMKGRLFTFGLISSWYFSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACALLSYV 426
Query: 1037 AIHVLKAKPLIQVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTV 858
I LK P+ + + +I +S +F ++V GN+SLR++PVSF Q + + TP T
Sbjct: 427 GIAWLKLAPMQTIRSRSQLLKIAALSVIFSTSVVGGNISLRFLPVSFNQAVGATTPFFTA 606
Query: 857 ILQWLVWSKHFEWRIWASLVPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTIL 687
+ +LV K W +A+LVP+V G+++ S E SF+++GF + A + K++L
Sbjct: 607 LFAYLVTFKREAWITYATLVPVVAGVVIASGGEPSFHLYGFIMCIGATAARALKSVL 777
>gb|DR688663.1|DR688663 EST1078748 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC905 3' end, mRNA sequence
Length = 788
Score = 132 bits (283), Expect = 5e-030
Identities = 52/163 (31%), Positives = 97/163 (59%)
Frame = -3 / +1
Query: 1160 WWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYIAIHVLKAKPLIQVEPEDRW 981
W+ N+ V+++NK++ F+FP+ ++ H S+ +Y+AI LK P+ + ++
Sbjct: 208 WYCSNIGVLLLNKYLLSNYGFRFPIFLTMCHMTACSLFSYVAIAWLKMVPMQPIRSRVQF 387
Query: 980 KRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVWSKHFEWRIWASL 801
+I +S +FC ++V G++SLRY+PVSF Q + + TP T + + + K W + +L
Sbjct: 388 MKISALSVIFCTSVVNGSISLRYLPVSFNQAVGATTPFFTAVFAYFMTVKRESWLTYLTL 567
Query: 800 VPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTILAESLL 672
VP+V G+++ S E SF+++GF ++ A + K++L LL
Sbjct: 568 VPVVTGVVIASGGEPSFHLYGFIMCILATAARALKSVLQGLLL 696
>gb|DT634875.1|DT634875 EST1149806 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGA72 3' end, mRNA sequence
Length = 832
Score = 132 bits (283), Expect = 5e-030
Identities = 52/163 (31%), Positives = 97/163 (59%)
Frame = -3 / +3
Query: 1160 WWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYIAIHVLKAKPLIQVEPEDRW 981
W+ N+ V+++NK++ F+FP+ ++ H S+ +Y+AI LK P+ + ++
Sbjct: 216 WYCSNIGVLLLNKYLLSNYGFRFPIFLTMCHMTACSLFSYVAIAWLKMVPMQPIRSRVQF 395
Query: 980 KRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVWSKHFEWRIWASL 801
+I +S +FC ++V G++SLRY+PVSF Q + + TP T + + + K W + +L
Sbjct: 396 MKISALSVIFCTSVVNGSISLRYLPVSFNQAVGATTPFFTAVFAYFMTVKRESWLTYLTL 575
Query: 800 VPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTILAESLL 672
VP+V G+++ S E SF+++GF ++ A + K++L LL
Sbjct: 576 VPVVTGVVIASGGEPSFHLYGFIMCILATAARALKSVLQGLLL 704
>gb|DT637719.1|DT637719 EST1152650 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH678 3' end, mRNA sequence
Length = 842
Score = 131 bits (280), Expect = 1e-029
Identities = 55/166 (33%), Positives = 95/166 (57%)
Frame = -3 / +3
Query: 1217 GGKAPAGLGTLRAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYI 1038
G K PA G L I W+ N+ V+++NK++ FK+P+ ++ H ++ +Y+
Sbjct: 255 GSKLPAMKGRLFTFGLISSWYFSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACALLSYV 434
Query: 1037 AIHVLKAKPLIQVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTV 858
I LK P+ + + +I +S +F ++V GN+SLR++PVSF Q + + TP T
Sbjct: 435 GIAWLKLAPMQTIRSRSQLLKIAALSVIFSTSVVGGNISLRFLPVSFNQAVGATTPFFTA 614
Query: 857 ILQWLVWSKHFEWRIWASLVPIVGGILLTSVTELSFNIFGFCAAMV 720
+ +LV K W +A+LVP+V G+++ S E SF+++GF +V
Sbjct: 615 LFAYLVTFKREAWITYATLVPVVAGVVIASGGEPSFHLYGFIMCIV 752
>gb|AI812559.1|AI812559 12H4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 294
Score = 130 bits (278), Expect = 2e-029
Identities = 61/98 (62%), Positives = 70/98 (71%)
Frame = -3 / +1
Query: 1073 VHFICSSIGAYIAIHVLKAKPLIQVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFM 894
VHFICS++G+YIAI V KPLI V+P D +RI M F+F INIV GNVSL YIP+S
Sbjct: 1 VHFICSAVGSYIAISVFTVKPLIDVDPIDLSRRI*RM*FIFRINIVPGNVSLHYIPISMT 180
Query: 893 QTIKSFTPATTVILQWLVWSKHFEWRIWASLVPIVGGI 780
TIKS TPATTV +Q LV + RI SLVPIVGGI
Sbjct: 181 PTIKSMTPATTVFMQSLVSRNACDTRISRSLVPIVGGI 294
>gb|DT634501.1|DT634501 EST1149432 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG664 3' end, mRNA sequence
Length = 844
Score = 127 bits (272), Expect = 2e-028
Identities = 53/173 (30%), Positives = 100/173 (57%)
Frame = -3 / +2
Query: 1190 TLRAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYIAIHVLKAKP 1011
T+ L I W+ N+ V+++NK++ +++P+ ++ +H S +++AI L+ P
Sbjct: 257 TITTALIIAAWYSSNIGVLLLNKYLLSFFGYRYPIFLTMLHMCACSFYSFLAISWLEIVP 436
Query: 1010 LIQVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVWSK 831
+ + ++ +I +SF+F ++V GN SLRY+PVSF Q I + TP T I +++ K
Sbjct: 437 MQFIVSRRQFLKILALSFIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFIITCK 616
Query: 830 HFEWRIWASLVPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTILAESLL 672
++ +LVP+V GI++ S +E F++FGF + A + K+++ S L
Sbjct: 617 RESSVVYMALVPVVFGIVIASNSEPLFHLFGFLVCLGSTAARALKSVVQGSCL 775
>gb|DR687748.1|DR687748 EST1077830 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABW13 3' end, mRNA sequence
Length = 833
Score = 127 bits (271), Expect = 2e-028
Identities = 53/173 (30%), Positives = 100/173 (57%)
Frame = -3 / +3
Query: 1190 TLRAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYIAIHVLKAKP 1011
T+ L I W+ N+ V+++NK++ +++P+ ++ +H S +++AI L+ P
Sbjct: 249 TITTALIIAAWYSSNIGVLLLNKYLLSFFGYRYPIFLTMLHMCACSFYSFLAISWLEIVP 428
Query: 1010 LIQVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVWSK 831
+ + ++ +I +SF+F ++V GN SLRY+PVSF Q I + TP T I +++ K
Sbjct: 429 MQFIVSRRQFLKILALSFIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFIITCK 608
Query: 830 HFEWRIWASLVPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTILAESLL 672
++ +LVP+V GI++ S +E F++FGF + A + K+++ LL
Sbjct: 609 RESSVVYMALVPVVFGIVIASNSEPLFHLFGFLVCLGSTAARALKSVVQGLLL 767
>gb|DT630921.1|DT630921 EST1145852 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF243 3' end, mRNA sequence
Length = 810
Score = 110 bits (235), Expect = 2e-023
Identities = 41/51 (80%), Positives = 47/51 (92%)
Frame = -3 / +2
Query: 1184 RAVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYIAI 1032
RA+ A+LQWW FNV VII NKWIFQKLDFKFPL+VSCVHFICS++G+YIAI
Sbjct: 653 RALFAVLQWWCFNVAVIITNKWIFQKLDFKFPLSVSCVHFICSAVGSYIAI 805
>gb|AI813125.1|AI813125 23C2 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 510
Score = 109 bits (232), Expect = 5e-023
Identities = 41/53 (77%), Positives = 48/53 (90%)
Frame = -3 / +1
Query: 449 VTFNVAGNLKVAVAVLVSWSIFRNPISAMNAIGCGITLVGCTFYGYVRHLISQ 291
VTFNVAGN+KVAVA++VSW IFRNPIS +NA+GC ITL+GC FYGYVRH +SQ
Sbjct: 1 VTFNVAGNMKVAVAIMVSWLIFRNPISLLNAVGCAITLLGCXFYGYVRHKLSQ 159
>gb|AI813077.1|AI813077 20E1 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 417
Score = 103 bits (220), Expect = 2e-021
Identities = 43/125 (34%), Positives = 75/125 (60%)
Frame = -3 / +2
Query: 1046 AYIAIHVLKAKPLIQVEPEDRWKRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPA 867
+Y+AI LK P+ + ++ +I +S +FC ++V GN+SLRY+PVSF Q + + TP
Sbjct: 8 SYVAIAWLKMVPMQPIRSRVQFMKISALSVIFCTSVVNGNISLRYLPVSFNQAVGATTPF 187
Query: 866 TTVILQWLVWSKHFEWRIWASLVPIVGGILLTSVTELSFNIFGFCAAMVGCLATSTKTIL 687
T + + + K W + +LVP+V G+++ S E SF+++GF ++ A + K++L
Sbjct: 188 FTAVFAYFMTVKRESWLTYLTLVPVVTGVVIASGGEPSFHLYGFIMCILATAARALKSVL 367
Query: 686 AESLL 672
LL
Sbjct: 368 QGLLL 382
>gb|AW064759.1|AW064759 ST35D12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST35D12, mRNA sequence
Length = 563
Score = 103 bits (219), Expect = 3e-021
Identities = 41/130 (31%), Positives = 76/130 (58%)
Frame = -3 / +3
Query: 1139 VIIMNKWIFQKLDFKFPLTVSCVHFICSSIGAYIAIHVLKAKPLIQVEPEDRWKRIFPMS 960
V+++NK++ FK+P+ ++ H ++ +Y+ I LK P+ + + +I +S
Sbjct: 3 VLLLNKYLLSNYGFKYPIFLTMCHMTACALLSYVGIAWLKLAPMQTIRSRSQLLKIAALS 182
Query: 959 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLVWSKHFEWRIWASLVPIVGGI 780
+F ++V GN+SLR++PVSF Q + + TP T + +LV K W +A+LVP+V G+
Sbjct: 183 VIFSTSVVGGNISLRFLPVSFNQAVGATTPFFTALFAYLVTFKREAWITYATLVPVVAGV 362
Query: 779 LLTSVTELSF 750
++ + E F
Sbjct: 363 VIANGGEPXF 392
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 740,826,589
Number of Sequences: 355925
Number of extensions: 11954237
Number of successful extensions: 71543
Number of sequences better than 1.0e-020: 26
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 19739349945
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)