TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493645.2.1
(870 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO174147.1|CO174147 NDL1_42_B09.b1_A029 Needles control ... 102 3e-021
gb|BX250321.1|BX250321 BX250321 Pinus pinaster differenciat... 101 8e-021
gb|CF472618.1|CF472618 RTDS1_10_A02.g1_A015 Drought-stresse... 101 8e-021
gb|CF666242.1|CF666242 RTCNT1_21_H03.g1_A029 Root control P... 101 8e-021
gb|DR011636.1|DR011636 HEAT1_7_A06.b1_A029 Root at 37 C for... 101 8e-021
gb|DR013833.1|DR013833 HEAT1_21_G04.g1_A029 Root at 37 C fo... 101 8e-021
gb|DR014717.1|DR014717 HEAT1_51_E10.b1_A029 Root at 37 C fo... 101 8e-021
gb|DR014801.1|DR014801 HEAT1_51_E10.g1_A029 Root at 37 C fo... 101 8e-021
gb|DR016652.1|DR016652 STRS1_11_H07.b1_A034 Shoot tip pitch... 101 8e-021
gb|DR047993.1|DR047993 RTBOR1_6_A04.b2_A029 Roots plus adde... 101 8e-021
gb|DR048072.1|DR048072 RTBOR1_6_A04.g2_A029 Roots plus adde... 101 8e-021
gb|DR101834.1|DR101834 STRR1_76_E02.b1_A033 Stem Response R... 101 8e-021
gb|DR101913.1|DR101913 STRR1_76_E02.g1_A033 Stem Response R... 101 8e-021
gb|DR742743.1|DR742743 RTCU1_6_E07.g2_A029 Roots plus added... 101 8e-021
>gb|CO174147.1|CO174147 NDL1_42_B09.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_42_B09_A029 3', mRNA sequence
Length = 819
Score = 102 bits (218), Expect = 3e-021
Identities = 36/63 (57%), Positives = 41/63 (65%)
Frame = +2 / +3
Query: 317 GSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNR 496
G C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R
Sbjct: 138 GEADCSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRR 317
Query: 497 TRP 505
P
Sbjct: 318 KCP 326
>gb|BX250321.1|BX250321 BX250321 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035D06, mRNA sequence
Length = 701
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +1
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 238 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 414
>gb|CF472618.1|CF472618 RTDS1_10_A02.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_10_A02_A015 5', mRNA sequence
Length = 767
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +2
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 230 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 406
>gb|CF666242.1|CF666242 RTCNT1_21_H03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_21_H03_A029 5', mRNA sequence
Length = 642
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +1
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 229 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 405
>gb|DR011636.1|DR011636 HEAT1_7_A06.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_7_A06_A029 3', mRNA sequence
Length = 663
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +3
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 210 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 386
>gb|DR013833.1|DR013833 HEAT1_21_G04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_21_G04_A029 5', mRNA sequence
Length = 814
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / -2
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 618 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 442
>gb|DR014717.1|DR014717 HEAT1_51_E10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E10_A029 3', mRNA sequence
Length = 764
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +3
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 219 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 395
>gb|DR014801.1|DR014801 HEAT1_51_E10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E10_A029 5', mRNA sequence
Length = 798
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +3
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 228 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 404
>gb|DR016652.1|DR016652 STRS1_11_H07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_11_H07_A034 3', mRNA sequence
Length = 855
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / -1
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 228 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 52
>gb|DR047993.1|DR047993 RTBOR1_6_A04.b2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_A04_A029 3', mRNA sequence
Length = 594
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +3
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 291 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 467
>gb|DR048072.1|DR048072 RTBOR1_6_A04.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_A04_A029 5', mRNA sequence
Length = 576
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +3
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 261 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 437
>gb|DR101834.1|DR101834 STRR1_76_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_E02_A033 3', mRNA sequence
Length = 766
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +3
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 252 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 428
>gb|DR101913.1|DR101913 STRR1_76_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_E02_A033 5', mRNA sequence
Length = 618
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +1
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 223 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 399
>gb|DR742743.1|DR742743 RTCU1_6_E07.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_6_E07_A029 5', mRNA sequence
Length = 668
Score = 101 bits (215), Expect = 8e-021
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = +2 / +1
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C C RC KASRH+ CL+ CG CCA CNCVP GT+GN+D CPCY + TT G R P
Sbjct: 241 CSAACGERCKKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYANQTTHGGRRKCP 417
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 484,900,788
Number of Sequences: 355925
Number of extensions: 7865358
Number of successful extensions: 77587
Number of sequences better than 1.0e-020: 15
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12778481865
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)